Citrus Sinensis ID: 009374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
Protein Sequence
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA
Secondary Structure (PSIPRED)
cccccccccccccEEEcccHHHHHHHHHcccccccEEEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccEEEccccccccccccccccccEEEEcccEEEEEcccEEEEcccccccHHHHHHHHHccccccccEEEEEcccccccccHHHHHHccccccccccccccccHHHHHHHHHHccccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEcccccHHHHHHHHHccccccccEEEEEEccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEcEEEEccccccEcEEEEEcccccEEcEccEEEEcccccEEEEEcccccccccHHHHHcccccccccEEEEEccccccccHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHccccHHHHHHHHc
Coil and Loop (DISEMBL)
mrnnpgraipsskvmsfRTAAevddwlysnpmrcpgalhfvdrnattisygiqtnstpiemrgryedptfkfqiPLQLAAEREIARSlvgdpnfswvvglkefahppgeifsAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIskssssttiGFSVFIVGFLTQLVTafgfpysdqfsntyRTIWSLFPPNLLAEALQLLSdatetpqdigiswsrraecapndtecviTINDIYIWLVATFFVWFILAIYLdniipnaagvrkstfyflkpgywtgkggnkieegsicscvgsvppmehitpddedvLEEENMVKQQIresipdpnvAVQIRGLvktfpgtrkigccckcqktspyhaiKGLWVNIAKDQLfcllgpngagktttiscltgitpvtggdalIYGFSIRSSvsmtniqksigvcpqfnilwdalsgeEHLHLFANikglpldsiksvca
Flexible Loop (DISEMBL)
mrnnpgraipsskvmsfRTAAEVDDWLYSNPMRCPGALHFVDRNATTisygiqtnstpieMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGIswsrraecapnDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQiresipdpnvaVQIRGLVktfpgtrkiGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFanikglpldsiKSVCA
Low Complexity Region (SEG)
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDfflnnsfavlfllfflfelnMTGfafmfsafiskssssttigfsvfIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA
Disordered region (IsUnstruct)
****************FRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSV******************************PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS******
Disordered Region (DISOPRED)
******RAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWT**************************************************NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD**KSVCA
Disordered Region (DISEMBL)
***********SKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA
Disordered Region (DISPRO)
*****GRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGG***************************************RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	536	2.2.26 [Sep-21-2011]
Q84K47	983	ABC transporter A family	yes	no	0.994	0.542	0.738	0.0
Q9FLT5	950	ABC transporter A family	no	no	0.996	0.562	0.708	0.0
Q9FKF2	953	ABC transporter A family	no	no	0.996	0.560	0.694	0.0
Q8T5Z7	877	ABC transporter A family	yes	no	0.763	0.466	0.303	8e-43
Q8WWZ7	1642	ATP-binding cassette sub-	yes	no	0.664	0.216	0.320	3e-40
Q8CF82	1642	ATP-binding cassette sub-	yes	no	0.645	0.210	0.294	2e-36
Q84M24	1882	ABC transporter A family	no	no	0.656	0.187	0.307	6e-36
Q9FLT8	917	ABC transporter A family	no	no	0.736	0.430	0.274	2e-35
Q8K448	1642	ATP-binding cassette sub-	yes	no	0.666	0.217	0.321	3e-35
Q9STT5	935	ABC transporter A family	no	no	0.735	0.421	0.283	2e-34

>sp|Q84K47|AB2A_ARATH ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/535 (73%), Positives = 457/535 (85%), Gaps = 2/535 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
           IYG SIRSSV M+NI+K IGVCPQF+ILWDALSGEEHL LFA+IKGLP  SI S+
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSGEEHLKLFASIKGLPPSSINSM 644

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLT5|AB9A_ARATH ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/538 (70%), Positives = 438/538 (81%), Gaps = 4/538 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP++KV SF    EVD W  S+P +  GALHFV++NAT ISYGIQTNS+  +
Sbjct: 111 MANNPGRPIPTNKVQSFTKPEEVDAWFMSHPSQVTGALHFVEKNATVISYGIQTNSSSEK 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPP--GE-IFSAVARI 117
            RGR EDPTFKF +PLQ+AAEREIARSL+GDP FSW  G KEFA P   GE I SA   +
Sbjct: 171 KRGRREDPTFKFLVPLQIAAEREIARSLIGDPKFSWDFGFKEFARPAIGGEVIISAFYLM 230

Query: 118 GPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLF 177
           GP FFLA +MFGFV Q+ S+VTEKELKLR+ MT MG+Y+SAYWLSWL WEG L  +SSLF
Sbjct: 231 GPVFFLAFSMFGFVLQLGSVVTEKELKLREAMTTMGVYESAYWLSWLIWEGILTFVSSLF 290

Query: 178 IVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVG 237
           +V+FGMMFQF+FFL NSF ++FLLFFLF+ NM G AF  S+ ISKSSS+TT+GF VF+VG
Sbjct: 291 LVLFGMMFQFEFFLKNSFVLVFLLFFLFQFNMIGLAFALSSIISKSSSATTVGFLVFLVG 350

Query: 238 FLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAEC 297
           F+TQ+VT  GFPYS  +S   R IWSLFPPN  +  LQLL +AT +P D GISWS RA C
Sbjct: 351 FITQIVTTAGFPYSSAYSIGSRVIWSLFPPNTFSAGLQLLLEATSSPGDSGISWSERAIC 410

Query: 298 APNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGG 357
           A  ++ CVIT N IYIWLV TFF WF+LA+Y DNIIPNA+GVRKS FYFLKP YWTGK G
Sbjct: 411 AGGESTCVITTNKIYIWLVGTFFFWFVLALYFDNIIPNASGVRKSIFYFLKPSYWTGKEG 470

Query: 358 NKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFP 417
           NK+EEGSICSC+GSVPP+EHITP+DEDVLEEE +VKQQ  +   DPN+AVQI GL KT+P
Sbjct: 471 NKVEEGSICSCIGSVPPVEHITPEDEDVLEEEILVKQQAMDGRVDPNIAVQIHGLAKTYP 530

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           GT K+G CCKC KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTISCLTGI PVTGGD
Sbjct: 531 GTTKLG-CCKCTKTSPFHAVKGLWMNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGD 589

Query: 478 ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
           A IYG SIRSSV M+NI+K IGVCPQF+ILWDALS EEHLHLFA+IKGLP  SIKS+ 
Sbjct: 590 AKIYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSSEEHLHLFASIKGLPPSSIKSIA 647

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKF2|AB11A_ARATH ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/537 (69%), Positives = 438/537 (81%), Gaps = 3/537 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP++KV SF+   EVD WL S+P++ PGALHFV+RNA+ ISYG+QTNS+   
Sbjct: 111 MANNPGRPIPTNKVQSFKEPDEVDTWLLSHPLQVPGALHFVERNASVISYGVQTNSSSES 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPP--GEIFSAVARIG 118
            RG+ EDPTFKF +PLQ+AAEREIARSL+GDPNF W +G KEFA P    E  SA++ +G
Sbjct: 171 KRGQTEDPTFKFLVPLQVAAEREIARSLLGDPNFGWGLGFKEFARPAIITETTSALSVMG 230

Query: 119 PTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFI 178
           P FFLA +MFGFV Q+ +LVTEKELKLRQ MTMMG+YDSAYWLSWLTWEG L L+SSLF+
Sbjct: 231 PVFFLAFSMFGFVLQLGALVTEKELKLRQAMTMMGVYDSAYWLSWLTWEGILTLVSSLFL 290

Query: 179 VIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGF 238
           V+FGM+F+FDFFL NSF ++FLLF LF+ NM G AF  S+ ISKSSS+TT+GF VF++GF
Sbjct: 291 VLFGMIFRFDFFLKNSFVLVFLLFLLFQFNMIGLAFALSSIISKSSSATTVGFLVFLIGF 350

Query: 239 LTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECA 298
           +TQ V+A GFPYS  ++ + R +WSLFPPN  +  L+LL DAT TP+  GISWS RA C 
Sbjct: 351 ITQFVSATGFPYSSSYAVSRRVMWSLFPPNTFSAGLKLLLDATSTPKSSGISWSNRAVCE 410

Query: 299 PNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN 358
                CVI+IN IY WL+ TF  WF+LAIY DNIIPNA+GVRK  FYFL PGYWTGKGGN
Sbjct: 411 GGQATCVISINIIYQWLLGTFLFWFVLAIYFDNIIPNASGVRKPIFYFLAPGYWTGKGGN 470

Query: 359 KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPG 418
           K+EEGSI SCVGSVP +EH TP+D+DVLEEE  VKQQ  + I DPN+AVQI GL KT+PG
Sbjct: 471 KVEEGSIFSCVGSVPLVEHNTPNDKDVLEEETEVKQQAMDGIADPNIAVQIHGLAKTYPG 530

Query: 419 TRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478
           T K+G CCKC KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTISCLTGI PVTGGDA
Sbjct: 531 TTKLG-CCKCTKTSPFHAVKGLWMNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDA 589

Query: 479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
           LIYG SIRSSV ++NI+K IGVCPQF+ILWDALS E+HLHLFA+IKGLP  SIKS  
Sbjct: 590 LIYGDSIRSSVGISNIRKMIGVCPQFDILWDALSSEQHLHLFASIKGLPPASIKSTA 646

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T5Z7|ABCA1_DICDI ABC transporter A family member 1 OS=Dictyostelium discoideum GN=abcA1 PE=2 SV=1

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 144/475 (30%), Positives = 221/475 (46%), Gaps = 66/475 (13%)

Query: 82  REIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTE 140
           ++I    +  P  S+  G   F   P E     AR+ G  F+   +M  F+F +  +  E
Sbjct: 237 QKIRNEKIPPPTISY--GSNAFPRYPPE--QGAARVWGGLFYYCGSMISFIFLLYKVSFE 292

Query: 141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFL 200
           KE KL+Q M MMGL  + YW+SW     T+ +L SL  +I G+  Q  FFL ++F VL +
Sbjct: 293 KENKLKQGMVMMGLSVNQYWISWFITSFTIDILISLITIIVGLACQLPFFLGSNFFVLII 352

Query: 201 LFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTA------FGFPYSDQF 254
            F LF ++M+  AF    FI  + S+  IG  +FIVG + QLV +      F   Y    
Sbjct: 353 TFSLFTISMSSVAFFLLTFIQSTKSAIGIGMGIFIVGSIFQLVFSGMGTMIFELIYQTNS 412

Query: 255 SNTY--RTIWSLFPPNLLAEALQLLSDAT-----------ETPQDIGISWSRRAECAPND 301
           +     R I    P     + L  + + T           +   D+ I  +      P  
Sbjct: 413 NGALAARIILFFIPMFHFTKVLTDIGNVTTNYPLLTYKFSDLSTDLNIGGTVLKTVIPTT 472

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
            + +        +L+A   V+ +LA Y ++IIP   G     ++F+ P YW         
Sbjct: 473 GQSI-------CYLLALIGVYTVLAWYFEHIIPGNDGTSSPPWFFVLPSYW--------- 516

Query: 362 EGSICSCVGSVPPMEHITP--DDEDVLEEENMVKQQIRESIPDPNVA-VQIRGLVKTFPG 418
            G     V  +P     TP  DDED       V+  I ++    N A + I GL K++  
Sbjct: 517 -GLSLKKVRHIP-----TPYFDDED-------VRAAITKAHDASNRAPLIICGLSKSYTK 563

Query: 419 TRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478
                   + +KT   HA+K L +++ K  +   LG NG GK+TTI  LTG+   T GDA
Sbjct: 564 ------LFRPKKT--VHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPTAGDA 615

Query: 479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
           L+YG S+ S+++   +++   V PQ +ILW  ++  EHL LF+ +KG+P    +S
Sbjct: 616 LVYGHSVISNIAA--VRRITSVVPQHDILWAEMTAREHLQLFSELKGIPAQERES 668

Dictyostelium discoideum (taxid: 44689)

>sp|Q8WWZ7|ABCA5_HUMAN ATP-binding cassette sub-family A member 5 OS=Homo sapiens GN=ABCA5 PE=2 SV=2

 Score =  167 bits (422), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 210/418 (50%), Gaps = 62/418 (14%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE K+++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKKIKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIV-GFLTQ 241
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +  GF+  
Sbjct: 286 TASLL--FPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGL 343

Query: 242 LVTAF-GFPYSDQFSNTYRTIWSLFPPNL-------LAEALQLLSDATETPQDIGISWSR 293
           ++     FP S         +W LF P         +A+ + L  D  E     G S+S 
Sbjct: 344 MIILIESFPKS--------LVW-LFSPFCHCTFVIGIAQVMHL-EDFNE-----GASFSN 388

Query: 294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWT 353
                      +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+
Sbjct: 389 ---LTAGPYPLIITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS 441

Query: 354 GKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLV 413
            K     EE S  +  G++   E I P   + + +E                A++I G+ 
Sbjct: 442 -KSKRNYEELSEGNVNGNISFSEIIEPVSSEFVGKE----------------AIRISGIQ 484

Query: 414 KTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473
           KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++ L G+ P 
Sbjct: 485 KTY---RKKG--------ENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPP 533

Query: 474 TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
           + G A IYG  +     M   +K IG+CPQ +I +D L+ EE+L + A+IKG+P ++I
Sbjct: 534 SDGFASIYGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNI 591

May play a role in the processing of autolysosomes.

Homo sapiens (taxid: 9606)

>sp|Q8CF82|ABCA5_RAT ATP-binding cassette sub-family A member 5 OS=Rattus norvegicus GN=Abca5 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 205/428 (47%), Gaps = 82/428 (19%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE +L++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKRLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +V     L
Sbjct: 286 T--ASSLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGL 343

Query: 243 VTAF--GFPYSDQFSNTYRTIWSLFPPNL-------LAEALQL--------LSDATETPQ 285
           +      FP S         +W LF P         +A+ + L         S  TE P 
Sbjct: 344 LIVLVESFPRS--------LVW-LFSPLCQCAFLIGIAQVMHLEDFNEGALFSSLTEGPY 394

Query: 286 DIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFY 345
            + I+ +  A                   L + F+   +LA+YLD +IP   G+R+S+ Y
Sbjct: 395 PLIITLTMLA-------------------LDSVFYA--LLAVYLDQVIPGEFGLRRSSLY 433

Query: 346 FLKPGYWTGKGGN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDP 403
           FLKP YW+    N  ++ EG+I    G++   E + P   + + +E              
Sbjct: 434 FLKPSYWSKNKRNYKELSEGNIN---GNISLNEIVEPVSSEFIGKE-------------- 476

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
             A++I G+ K +   RK        K     A++ L  +I + Q+  LLG +G GK+T 
Sbjct: 477 --AIRISGIQKAY---RK--------KNETVEALRNLSFDIYEGQITALLGHSGTGKSTL 523

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523
           ++ L G+ P + G A IYG  +     M   +K IG+CPQ ++ +D L+ EE+L + A++
Sbjct: 524 MNILCGLCPPSDGFASIYGHRVSEIDEMFEARKMIGICPQSDMNFDVLTVEENLSILASV 583

Query: 524 KGLPLDSI 531
           KG+P ++I
Sbjct: 584 KGIPANNI 591

May play a role in the processing of autolysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 201/416 (48%), Gaps = 64/416 (15%)

Query: 134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSW-LTWEGTLVLLSSLFIV-IFGMMFQFDFFL 191
           IS  V EKE K+R+ + MMGL D  + LSW +T+     L S +      G +F++    
Sbjct: 295 ISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKY---- 350

Query: 192 NNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPY- 250
            +   ++F  FFLF L+    +FM S F +++ ++  +G   F+  F         FPY 
Sbjct: 351 -SDKTLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAF---------FPYY 400

Query: 251 ---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR--RAECAPNDTECV 305
               +  S   + + SL  P   A AL  ++ A      +G+ WS   RA    +   C+
Sbjct: 401 TVNDESVSMVLKVVASLLSPT--AFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCL 458

Query: 306 ITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKS-TFYFLKPGYWTGKGGNKIEEGS 364
           +        ++    ++  L +YLD ++P   GVR    F F K   + G+  N ++   
Sbjct: 459 L-------MMLLDSILYCALGLYLDKVLPRENGVRYPWNFIFSK---YFGRKKNNLQN-- 506

Query: 365 ICSCVGSVPPME-HITPDDEDVLEEE------NMVKQQIRESIPDPNVAVQIRGLVKTFP 417
                  +P  E  + P D +V + E        +  ++R+   D    +Q+R L K + 
Sbjct: 507 ------RIPGFETDMFPADIEVNQGEPFDPVFESISLEMRQQELDGR-CIQVRNLHKVYA 559

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
             R  G CC         A+  L + + ++Q+  LLG NGAGK+TTIS L G+ P T GD
Sbjct: 560 SRR--GNCC---------AVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGD 608

Query: 478 ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
           ALI G SI +  +M  I+K +GVCPQ +IL+  L+  EHL +FA +KG+   S+KS
Sbjct: 609 ALILGNSIIT--NMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVEEGSLKS 662

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1

 Score =  150 bits (380), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 206/451 (45%), Gaps = 56/451 (12%)

Query: 100 LKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSA 158
           LKE      ++   +A + GP FF  V +  F   ++SLV EK+ +LR +M M GL D  
Sbjct: 309 LKEVPKEETKMNQDIASLLGPLFFTWVVLLLFPVILTSLVYEKQERLRIIMKMHGLGDGP 368

Query: 159 YWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSA 218
           YW+    +  T+ +L  + +V FG      +F  N +++ F+ +F++       AF+ S+
Sbjct: 369 YWMISYAYFLTISMLYVISLVGFGSAIGLKYFRRNDYSIQFVFYFIYSNLQISLAFLVSS 428

Query: 219 FISKSSSSTTIGFSVFIVGFLTQLVTAFGFPY---SDQFSNTYRTIWSLFPPNLLAEALQ 275
             SK  + T I    +I+ + T L+ +F F     +  F   +     L+P   L   L 
Sbjct: 429 IFSKVKTVTVIA---YILVYGTGLLGSFLFQKMIETQSFPEEWILAMELYPGFSLYRGLY 485

Query: 276 LLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPN 335
             S         G+ W   ++    +  C++++          +F+  I+A Y+D +  +
Sbjct: 486 EFSQYASRGN--GMKWQDLSDSGMGEVFCIMSVE---------WFLALIVAYYIDQVFTS 534

Query: 336 AAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEH----ITPDDEDVLEEENM 391
                K  F+FL          N  +  S      +V  ++     I  D  DV +E   
Sbjct: 535 G----KHPFFFLV---------NLFKSPSSLPRRPTVQRLDSKRVFIDMDKHDVTQERES 581

Query: 392 VKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFC 451
           V++   E       A+    L K +PG              P  A++GL+++++  + F 
Sbjct: 582 VQKLRNEG--STGHAILCDNLKKVYPGR---------DGNPPKMAVRGLYLSVSSGECFG 630

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDAL 511
           +LGPNGAGKT+ IS +TG+   + G AL+ G  I     M  +  S+GVCPQ ++LW+ L
Sbjct: 631 MLGPNGAGKTSFISMMTGLLKPSSGTALVQGLDI--CKDMNKVYTSMGVCPQHDLLWETL 688

Query: 512 SGEEHLHLFA---NIKGLPL-----DSIKSV 534
           +G EHL  +    NIKG  L     +S+KSV
Sbjct: 689 TGREHLLFYGRLKNIKGSDLTQAVEESLKSV 719

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K448|ABCA5_MOUSE ATP-binding cassette sub-family A member 5 OS=Mus musculus GN=Abca5 PE=1 SV=2

 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 134/417 (32%), Positives = 211/417 (50%), Gaps = 60/417 (14%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE KL++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKKLKEFLKIMGLHDTAFWLSWVLLYASLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +V     L
Sbjct: 286 T--ASSLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGL 343

Query: 243 VTAF--GFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           +      FP S         +W LF P  L +   L+  A    Q + +          N
Sbjct: 344 LIVLIESFPRS--------LVW-LFSP--LCQCAFLIGIA----QVMHLEDFNEGALFSN 388

Query: 301 DTE----CVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKG 356
            TE     +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+   
Sbjct: 389 LTEGPYPLIITI--IMLALDSVFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKNK 444

Query: 357 GN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVK 414
            N  ++ EG+I    G++   E + P   + + +E                A++I G+ K
Sbjct: 445 RNYKELSEGNIN---GNISLNEIVEPVSSEFIGKE----------------AIRISGIQK 485

Query: 415 TFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
           ++   RK        KT    A++ L  +I + Q+  LLG +G GK+T ++ L G+ P +
Sbjct: 486 SY---RK--------KTENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPS 534

Query: 475 GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
            G A IYG  +     M   +K IG+CPQ +I +D L+ EE+L + A+IKG+P ++I
Sbjct: 535 DGFASIYGHRVSEIDEMFEARKMIGICPQSDINFDVLTVEENLSILASIKGIPANNI 591

May play a role in the processing of autolysosomes.

Mus musculus (taxid: 10090)

>sp|Q9STT5|AB7A_ARATH ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 194/431 (45%), Gaps = 37/431 (8%)

Query: 100 LKEFAHPPGEIFSAVAR-IGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSA 158
           +KE   P   +   +A  IGP FF  V +  F   +SSLV EK+  LR +M M GL D  
Sbjct: 324 VKEMPKPETSLRLDIASLIGPLFFTWVILLLFPVILSSLVYEKQQHLRIIMKMHGLGDGP 383

Query: 159 YWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSA 218
           YW+    +  T+ +L  + ++IFG      FF  NS+++ F+ +FL+       AF+ S+
Sbjct: 384 YWMISYAYFLTISVLYVICLMIFGSAIGLKFFRLNSYSIQFVFYFLYLNLQIALAFLVSS 443

Query: 219 FISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278
             SK  +ST   +       L  L           F   +  +  L+P   L   L  L+
Sbjct: 444 VFSKVKTSTVASYIYVFGSGLLGLFLLNFLIEDSSFPRGWIIVMELYPGFSLYRGLYELA 503

Query: 279 D---ATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPN 335
                     + G+ W    + A         ++D++  +V  +F+  I A Y+D I   
Sbjct: 504 QFAFRGNLRGEDGMKWKDFGDSA---------MDDVFYIIVVEWFLALIAAYYIDKI--- 551

Query: 336 AAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQ 395
           ++  R   F+   P     K    +   S+    GS   ++   P   DV  E   V++ 
Sbjct: 552 SSSGRNPLFFLQNP----FKKSPSLRRPSL-QRQGSKVSVDMEKP---DVTHESKKVERL 603

Query: 396 IRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGP 455
           + ES    + A+    L K +PG              P  A++GL + +   + F +LGP
Sbjct: 604 MLES--STSHAIVCDNLKKVYPGR---------DGNPPKLAVRGLSLAVPSGECFGMLGP 652

Query: 456 NGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE 515
           NGAGKT+ I+ +TG+   T G AL+ G  I +   M  +  S+GVCPQ ++LW+ L+G E
Sbjct: 653 NGAGKTSFINMMTGLLKPTSGTALVQGLDICN--DMDRVYTSMGVCPQHDLLWETLTGRE 710

Query: 516 HLHLFANIKGL 526
           HL  +  +K L
Sbjct: 711 HLLFYGRLKNL 721

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
22331647	983	ABC transporter A family member 2 [Arabi	0.994	0.542	0.738	0.0
4741190	1011	ABC-type transport-like protein [Arabido	0.994	0.527	0.738	0.0
297819380	982	hypothetical protein ARALYDRAFT_485135 [	0.994	0.542	0.732	0.0
449440766	976	PREDICTED: ABC transporter A family memb	0.998	0.548	0.757	0.0
356516766	967	PREDICTED: ABC transporter A family memb	0.996	0.552	0.730	0.0
225456711	958	PREDICTED: ABC transporter A family memb	0.996	0.557	0.775	0.0
326501630	964	predicted protein [Hordeum vulgare subsp	0.992	0.551	0.698	0.0
225456709	950	PREDICTED: ABC transporter A family memb	0.981	0.553	0.764	0.0
255540953	952	abc transporter, putative [Ricinus commu	0.994	0.559	0.724	0.0
357147716	965	PREDICTED: ABC transporter A family memb	0.992	0.551	0.688	0.0

>gi|22331647|ref|NP_190357.2| ABC transporter A family member 2 [Arabidopsis thaliana] gi|75327852|sp|Q84K47.1|AB2A_ARATH RecName: Full=ABC transporter A family member 2; Short=ABC transporter ABCA.2; Short=AtABCA2; AltName: Full=ABC2 homolog 1 gi|28393591|gb|AAO42215.1| putative ABC transporter protein [Arabidopsis thaliana] gi|28973103|gb|AAO63876.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332644802|gb|AEE78323.1| ABC transporter A family member 2 [Arabidopsis thaliana]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/535 (73%), Positives = 457/535 (85%), Gaps = 2/535 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
           IYG SIRSSV M+NI+K IGVCPQF+ILWDALSGEEHL LFA+IKGLP  SI S+
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSGEEHLKLFASIKGLPPSSINSM 644

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4741190|emb|CAB41856.1| ABC-type transport-like protein [Arabidopsis thaliana]

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/535 (73%), Positives = 457/535 (85%), Gaps = 2/535 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
           IYG SIRSSV M+NI+K IGVCPQF+ILWDALSGEEHL LFA+IKGLP  SI S+
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSGEEHLKLFASIKGLPPSSINSM 644

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819380|ref|XP_002877573.1| hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata] gi|297323411|gb|EFH53832.1| hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/535 (73%), Positives = 455/535 (85%), Gaps = 2/535 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR IP+ KV SF     VD WL +NP+  PGALHFV+RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRPIPTEKVRSFVDPEAVDTWLMANPLLVPGALHFVERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKSSS+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSSSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R++WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSTGFPYAKKYSRRIRSLWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 DT-ECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
           D  +CVITINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDIDCVITINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC GSVPP++HITPDDEDVLEEE +VKQ   + + DPN+AVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCTGSVPPVDHITPDDEDVLEEETLVKQHSVDGLVDPNIAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
              G CCKC+KT P+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct: 531 TNFG-CCKCKKTPPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query: 480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
           IYG SIRSSV M+NI+K IGVCPQF+ILWD+LSGEEHL LFA+IKGLP  SI S+
Sbjct: 590 IYGNSIRSSVGMSNIRKMIGVCPQFDILWDSLSGEEHLKLFASIKGLPPSSINSM 644

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440766|ref|XP_004138155.1| PREDICTED: ABC transporter A family member 2-like [Cucumis sativus] gi|449477295|ref|XP_004154984.1| PREDICTED: ABC transporter A family member 2-like [Cucumis sativus]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/537 (75%), Positives = 457/537 (85%), Gaps = 2/537 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M  NPGR+IP++KV+SF T AEVD WL++NPM CPGALHF +RN T ISYG+QTNST + 
Sbjct: 111 MAKNPGRSIPANKVLSFGTPAEVDKWLFNNPMTCPGALHFTERNGTVISYGLQTNSTAVA 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG+YEDP FKFQIPLQ+AAEREIAR  +GDPNFSWVV   EFAHP    FSAV  IGPT
Sbjct: 171 RRGQYEDPIFKFQIPLQIAAEREIARFFIGDPNFSWVVNFMEFAHPAVNKFSAVNTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYD+AYWLSWLTWEG   L++S+F V+
Sbjct: 231 FFLAIAMFGFVLQISSLITEKELKLRQAMTMMGLYDTAYWLSWLTWEGITTLIASIFTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFF  N+FAV+FL+FFLF+LNM GFAFM SAFISKSSSSTT+GFS+FIVGFLT
Sbjct: 291 FGMMFQFDFFSKNNFAVVFLVFFLFQLNMVGFAFMLSAFISKSSSSTTVGFSIFIVGFLT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPY+D  S  Y+ IWSLFPPNLLA+AL LLSDAT TP D GISWS R EC P 
Sbjct: 351 QLVTGFGFPYADGISKAYQIIWSLFPPNLLAKALSLLSDATATPSDPGISWSSRTECIPK 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
            +ECVITIN+IY WLV TFF+WF LAIY DNIIPNAAGVRKS FYFL+PGYWTGKGG+K+
Sbjct: 411 GSECVITINEIYSWLVGTFFLWFFLAIYFDNIIPNAAGVRKSAFYFLRPGYWTGKGGSKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           EEG I SC+GS+P +E ITPDDEDVLEEE+ VKQQ+   I DPNVAVQIRGL KT+PG  
Sbjct: 471 EEGGIFSCLGSLPVLEPITPDDEDVLEEESTVKQQLSNGIVDPNVAVQIRGLAKTYPGAW 530

Query: 421 KI--GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA 478
           K+  GCCCKC KTSPYHA++GLWVN AKDQLFCLLGPNGAGKTT+ISCLTGITPVTGGDA
Sbjct: 531 KVKLGCCCKCTKTSPYHAVRGLWVNFAKDQLFCLLGPNGAGKTTSISCLTGITPVTGGDA 590

Query: 479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
           LIYG S+R SV M NI+K IGVCPQF+ILW+ LSG+EHLHLFA IKGLP  SIKS+ 
Sbjct: 591 LIYGNSVRDSVGMANIRKIIGVCPQFDILWEVLSGQEHLHLFATIKGLPPSSIKSIA 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516766|ref|XP_003527064.1| PREDICTED: ABC transporter A family member 2-like [Glycine max]

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/534 (73%), Positives = 443/534 (82%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP SKV SF+  +EVD WL SNPMRCPGALHF +RN T ISYG+QTNST ++
Sbjct: 112 MNNNPGRPIPPSKVKSFKEKSEVDAWLLSNPMRCPGALHFSERNDTVISYGLQTNSTSLQ 171

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG+YEDPT  FQ+PLQLAAEREIAR L+GD +FSW V L+EFAHP    FSAVA IGP 
Sbjct: 172 RRGKYEDPTASFQLPLQLAAEREIARYLIGDADFSWNVFLREFAHPSMNPFSAVASIGPA 231

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMF FV QISSLVTEKELKLRQ M MMGLYD AYW SWL WE  + +LSSL IV+
Sbjct: 232 FFLAIAMFNFVLQISSLVTEKELKLRQAMNMMGLYDFAYWFSWLIWEAVVTILSSLLIVL 291

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQF FFL+NSF VLF+LFFLFELNMTG AFM SAFI KSSS+TT+GFS+FIVGF+T
Sbjct: 292 FGMMFQFRFFLDNSFVVLFVLFFLFELNMTGLAFMISAFIRKSSSATTVGFSIFIVGFVT 351

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLV   GFPY+D FS T R +WSLFPPNL A+ +++LSDA  T +D GISWS+R ECA N
Sbjct: 352 QLVVQQGFPYTDSFSKTIRNVWSLFPPNLFAQGIKVLSDAVATSEDKGISWSKRGECALN 411

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D++CVITI+DIY WL ATFF+WF+LAIY DNIIPNA+GVRKS  YFL P YW GKGG K+
Sbjct: 412 DSDCVITIDDIYKWLAATFFLWFVLAIYFDNIIPNASGVRKSILYFLNPSYWMGKGGQKV 471

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           +EG +CSC+GS P  E  TPDDEDVLEEEN VKQQ+ E + D NVAVQIRGL KT+PGTR
Sbjct: 472 KEGGVCSCIGSAPRQEQSTPDDEDVLEEENKVKQQLTEGLLDANVAVQIRGLAKTYPGTR 531

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IGCC KC++TSPY+A+KGLWVN AKDQLFCLLGPNGAGKTT I+CLTG+TPVT GDALI
Sbjct: 532 SIGCCFKCKRTSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGVTPVTDGDALI 591

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
           YG SIRSS  M+NI+K IGVCPQF+ILWDALSG+EHL LFA IKGL   SIKS+
Sbjct: 592 YGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLQLFATIKGLSPASIKSI 645

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456711|ref|XP_002274102.1| PREDICTED: ABC transporter A family member 2 isoform 1 [Vitis vinifera] gi|297734007|emb|CBI15254.3| unnamed protein product [Vitis vinifera]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/535 (77%), Positives = 470/535 (87%), Gaps = 1/535 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           EEG ICSC+GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 EEGGICSCIGSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 530

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GDALI
Sbjct: 531 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDALI 589

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
           YG+SIRSSV M+NI++ IGVCPQF+ILW++LSG+EHL LF++IKGLP  S+KSV 
Sbjct: 590 YGYSIRSSVGMSNIRRIIGVCPQFDILWNSLSGQEHLELFSSIKGLPPSSVKSVA 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326501630|dbj|BAK02604.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/534 (69%), Positives = 443/534 (82%), Gaps = 2/534 (0%)

Query: 2   RNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEM 61
           RNNPGR IP+ KV+ FRT  EVD WL+ NPMRCPGALHF D N T +SYGIQTNSTP+  
Sbjct: 112 RNNPGRPIPAEKVLGFRTPDEVDAWLFENPMRCPGALHFQDINPTQMSYGIQTNSTPVAR 171

Query: 62  RGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTF 121
           RG YEDPTFKFQIPLQ+AAERE+AR ++GDPNFSW VG KEFAHP  E FS +A+ GPTF
Sbjct: 172 RGTYEDPTFKFQIPLQVAAEREMARLIIGDPNFSWTVGFKEFAHPATETFSTIAQAGPTF 231

Query: 122 FLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIF 181
           FLA+AMFGFVFQIS+LVTEKELKLRQ M++MGLY+SAYWLSWLTWE  L L+S+LF V+F
Sbjct: 232 FLAIAMFGFVFQISALVTEKELKLRQAMSIMGLYESAYWLSWLTWEALLTLISALFTVLF 291

Query: 182 GMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQ 241
           GMMFQFDFFLNNSF +LF LFFLF+LNM GFAFM S F++K++S+TT+GF++FI+GFLTQ
Sbjct: 292 GMMFQFDFFLNNSFGILFFLFFLFQLNMLGFAFMISTFVAKAASATTVGFAIFIIGFLTQ 351

Query: 242 LVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND 301
           LVT FGFPYS+ +   YRTIWS FPPN+ A+AL +L  AT TP+D GISW++R  C   +
Sbjct: 352 LVTTFGFPYSNTYEAYYRTIWSFFPPNVFAQALNILGKATATPEDKGISWNQRTTCQSFE 411

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
           T+CVIT++DIYIWL++TFF+WFILAIY DNIIPN  GVRKS  YFL P YWTGKGG K+ 
Sbjct: 412 TDCVITVDDIYIWLISTFFLWFILAIYFDNIIPNVNGVRKSVLYFLTPSYWTGKGG-KMR 470

Query: 362 EGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRK 421
           EG +CSC GS    +  +P DEDVL EEN+VK+Q   +  DP VAVQIRGL KT+PG+  
Sbjct: 471 EGGLCSCFGSSHSADDASPTDEDVLTEENLVKEQAAGNEVDPGVAVQIRGLRKTYPGSFN 530

Query: 422 IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY 481
           +G CCKC+ T P+H++KGLWVN+ KDQLFCLLGPNGAGKTTTISCLTGITP+TGGDALIY
Sbjct: 531 MG-CCKCKTTKPFHSVKGLWVNLEKDQLFCLLGPNGAGKTTTISCLTGITPITGGDALIY 589

Query: 482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
           G S+RSS  M NI++ IGVCPQF+ILWDAL+ +EH+ LFA+IKGLP  +IKSV 
Sbjct: 590 GHSVRSSAGMANIRRMIGVCPQFDILWDALTAKEHMELFASIKGLPPSTIKSVA 643

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456709|ref|XP_002274135.1| PREDICTED: ABC transporter A family member 2 isoform 2 [Vitis vinifera]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/535 (76%), Positives = 463/535 (86%), Gaps = 9/535 (1%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           E        GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 E--------GSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 522

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI 480
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GDALI
Sbjct: 523 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDALI 581

Query: 481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
           YG+SIRSSV M+NI++ IGVCPQF+ILW++LSG+EHL LF++IKGLP  S+KSV 
Sbjct: 582 YGYSIRSSVGMSNIRRIIGVCPQFDILWNSLSGQEHLELFSSIKGLPPSSVKSVA 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540953|ref|XP_002511541.1| abc transporter, putative [Ricinus communis] gi|223550656|gb|EEF52143.1| abc transporter, putative [Ricinus communis]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/537 (72%), Positives = 441/537 (82%), Gaps = 4/537 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SFRT  +VD WL +NPM+CPGALHF + NAT ISYGIQTNST   
Sbjct: 111 MNNNPGRVIPSHKVKSFRTTDDVDVWLLNNPMQCPGALHFKEINATIISYGIQTNSTQTR 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG +EDP FKFQIPLQ+AAEREIARS++GD NFSWVVGLKE+AHP  + FS +  +GP 
Sbjct: 171 DRGHFEDPVFKFQIPLQIAAEREIARSVIGDANFSWVVGLKEYAHPAEDNFSTLGTVGPA 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA  MFGFV QI +LV EKELKLRQ M + GLYDS YWLSW+TWEG L L+SSL +++
Sbjct: 231 FFLAFVMFGFVMQIGNLVAEKELKLRQAMNLTGLYDSVYWLSWITWEGILALISSLLLIL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFF  N+FAVLFL FFLF+LNM  FAFM S FISKSSS+TT+GFSVFIVGF T
Sbjct: 291 FGMMFQFDFFKKNNFAVLFLAFFLFQLNMVSFAFMLSTFISKSSSATTVGFSVFIVGFFT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAEC--- 297
           Q+ T  GFPY    S   + IWSLFPPNL A A+  LS+AT TP+D+GISWSRR EC   
Sbjct: 351 QVATIAGFPYDLDVSTIIQNIWSLFPPNLFAIAVDSLSEATNTPEDVGISWSRRKECVSE 410

Query: 298 APNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGG 357
           A    +CV++IND+YIWLVATFF WF+LAIY DNI PNA GVRKS FYFLKPGYWTGKGG
Sbjct: 411 ASGTDKCVMSINDVYIWLVATFFFWFVLAIYFDNIFPNANGVRKSLFYFLKPGYWTGKGG 470

Query: 358 NKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFP 417
           NK EEGSICSC+GSVP  +HI+P+DEDVLEEEN VKQ  RE   +PNVAVQ+RGL+KT+ 
Sbjct: 471 NKSEEGSICSCMGSVPQQDHISPEDEDVLEEENTVKQDAREVTANPNVAVQVRGLMKTYA 530

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           GT KIG CCKC+KTSPYHA+KGLW+N AKDQLFCLLGPNGAGKTT I+CLTGITPVT GD
Sbjct: 531 GTTKIG-CCKCKKTSPYHALKGLWMNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTSGD 589

Query: 478 ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
           ALIYG S+RSSV M+NI++ IGVCPQF++LWDALSGEEHLHLFANIKGLP   I SV
Sbjct: 590 ALIYGNSVRSSVGMSNIRRIIGVCPQFDVLWDALSGEEHLHLFANIKGLPQSLIGSV 646

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147716|ref|XP_003574455.1| PREDICTED: ABC transporter A family member 2-like [Brachypodium distachyon]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/533 (68%), Positives = 441/533 (82%), Gaps = 1/533 (0%)

Query: 3   NNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMR 62
           NNPGR IP+ KV+ F T  EVD WL+ NPMRCPGALHF D NAT ++YGIQTNSTP+  R
Sbjct: 113 NNPGRPIPADKVLGFGTPDEVDAWLFENPMRCPGALHFQDINATQLTYGIQTNSTPVARR 172

Query: 63  GRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFF 122
           G YEDPTFKFQIPLQ+AAERE+AR ++GDPNFSW VG KEFAHP  E FS +A+ GPTFF
Sbjct: 173 GTYEDPTFKFQIPLQVAAEREMARLIIGDPNFSWTVGFKEFAHPATETFSTIAQAGPTFF 232

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           LA+AMFGFVFQIS+LVTEKELKLRQ M++MGLY+S+YWLSWLTWE  L LLS+LF V+FG
Sbjct: 233 LAIAMFGFVFQISALVTEKELKLRQAMSIMGLYESSYWLSWLTWEAFLTLLSALFTVLFG 292

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
           MMFQFDFFLNN+F +LFLLFFLF+LNM  FAFM S F++K++S+TT+GF++FI+GFLTQL
Sbjct: 293 MMFQFDFFLNNNFGILFLLFFLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQL 352

Query: 243 VTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDT 302
           VT FGFPYS  +   YRTIWSLFPPN+ A+AL +L  AT TP+D GISW++R  C   +T
Sbjct: 353 VTTFGFPYSTSYQKYYRTIWSLFPPNVFAQALNILGKATATPEDKGISWNQRGTCQSFET 412

Query: 303 ECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEE 362
           +CVIT++DIY WL++TFFVWFILAIY DNIIPN  GVRKS FYFL P YWTGKGG K++E
Sbjct: 413 DCVITVDDIYKWLISTFFVWFILAIYFDNIIPNVNGVRKSVFYFLMPSYWTGKGGGKMQE 472

Query: 363 GSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKI 422
           G +CS  GS    +  TP DEDVL E+N+VK Q   +  DP +AVQ+RGL KT+PG+  +
Sbjct: 473 GGLCSFFGSNRSADDATPTDEDVLTEQNLVKGQAASNEVDPGIAVQVRGLRKTYPGSFSM 532

Query: 423 GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           G CCKC+ T P+H++KGLWVN+ KDQLFCLLGPNGAGKTTTISCLTGITP+TGGDALIYG
Sbjct: 533 G-CCKCRTTKPFHSVKGLWVNLEKDQLFCLLGPNGAGKTTTISCLTGITPITGGDALIYG 591

Query: 483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC 535
            S+RS+  M+NI++ IGVCPQF+ILWDAL+ +EH+ LFA+IKGLP  +IK V 
Sbjct: 592 HSVRSTAGMSNIRRMIGVCPQFDILWDALTAKEHMELFASIKGLPPSTIKLVA 644

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
TAIR|locus:2100367	983	ABCA2 "ATP-binding cassette A2	0.994	0.542	0.680	3.8e-204
ZFIN|ZDB-GENE-050517-5	1673	abca5 "ATP-binding cassette, s	0.188	0.060	0.441	5.3e-30
UNIPROTKB|K7EPM3	917	ABCA5 "ATP-binding cassette su	0.214	0.125	0.365	4.2e-28
MGI|MGI:2386607	1642	Abca5 "ATP-binding cassette, s	0.192	0.062	0.388	1.1e-27
DICTYBASE|DDB_G0291994	877	abcA1 "ABC transporter A famil	0.272	0.166	0.365	1.6e-27
UNIPROTKB|E1BKP0	1562	ABCA5 "Uncharacterized protein	0.192	0.065	0.368	1.7e-27
UNIPROTKB|Q8WWZ7	1642	ABCA5 "ATP-binding cassette su	0.214	0.070	0.365	3.7e-27
UNIPROTKB|E7ETD3	1643	ABCA5 "ATP-binding cassette su	0.214	0.069	0.365	3.7e-27
UNIPROTKB|E2R172	1642	ABCA5 "Uncharacterized protein	0.214	0.070	0.357	1.3e-26
UNIPROTKB|K7GMQ1	1243	LOC100738613 "Uncharacterized	0.192	0.082	0.368	1.6e-26

TAIR|locus:2100367 ABCA2 "ATP-binding cassette A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1975 (700.3 bits), Expect = 3.8e-204, P = 3.8e-204
 Identities = 364/535 (68%), Positives = 421/535 (78%)

Query:     1 MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
             M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct:   111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query:    61 MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
              RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct:   171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query:   121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
             FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct:   231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query:   181 FGMMFQFDXXXXXXXXXXXXXXXXXXXXMTGXXXXXXXXXXXXXXXXXXXXXXXIVGFLT 240
             FGMMFQFD                    + G                       +VGF+T
Sbjct:   291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query:   241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
             QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct:   351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query:   301 D-TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
             D T CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct:   411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query:   360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
             +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct:   471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query:   420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL 479
              K GCC KC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGDAL
Sbjct:   531 TKFGCC-KCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDAL 589

Query:   480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
             IYG SIRSSV M+NI+K IGVCPQF+ILWDALSGEEHL LFA+IKGLP  SI S+
Sbjct:   590 IYGNSIRSSVGMSNIRKMIGVCPQFDILWDALSGEEHLKLFASIKGLPPSSINSM 644

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

ZFIN|ZDB-GENE-050517-5 abca5 "ATP-binding cassette, sub-family A (ABC1), member 5" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 5.3e-30, Sum P(3) = 5.3e-30
 Identities = 45/102 (44%), Positives = 66/102 (64%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +K +   A++GL  +I + Q+  LLG +GAGK+T ++ L GI P T G A IYG  +   
Sbjct:   511 EKDTKVEALRGLTFDIYEGQITALLGHSGAGKSTLMNILCGICPPTEGTATIYGSPVAEI 570

Query:   489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG-LPLD 529
                  +++ +G+CPQFNI++D L+ EEHL +FA IKG LP D
Sbjct:   571 AEGAEMKQLVGICPQFNIIFDVLTVEEHLRIFAAIKGILPSD 612

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|K7EPM3 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
 Identities = 46/126 (36%), Positives = 73/126 (57%)

Query:   406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
             A++I G+ KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++
Sbjct:   477 AIRISGIQKTY---RKKG--------ENVEALRNLSFDIYEGQITALLGHSGTGKSTLMN 525

Query:   466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
              L G+ P + G A IYG  +     M   +K IG+CPQ +I +D L+ EE+L + A+IKG
Sbjct:   526 ILCGLCPPSDGFASIYGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKG 585

Query:   526 LPLDSI 531
             +P ++I
Sbjct:   586 IPANNI 591

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2386607 Abca5 "ATP-binding cassette, sub-family A (ABC1), member 5" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
 Identities = 40/103 (38%), Positives = 64/103 (62%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +KT    A++ L  +I + Q+  LLG +G GK+T ++ L G+ P + G A IYG  +   
Sbjct:   489 KKTENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEI 548

Query:   489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
               M   +K IG+CPQ +I +D L+ EE+L + A+IKG+P ++I
Sbjct:   549 DEMFEARKMIGICPQSDINFDVLTVEENLSILASIKGIPANNI 591

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IMP

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IMP

GO:0043691 "reverse cholesterol transport" evidence=IC

DICTYBASE|DDB_G0291994 abcA1 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 215 (80.7 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
 Identities = 61/167 (36%), Positives = 94/167 (56%)

Query:   371 SVPPMEHI-TP--DDEDVLEEENMVKQQIRESIPDPNVA-VQIRGLVKTFPGTRKIGCCC 426
             S+  + HI TP  DDEDV       +  I ++    N A + I GL K++  T+      
Sbjct:   519 SLKKVRHIPTPYFDDEDV-------RAAITKAHDASNRAPLIICGLSKSY--TKLF---- 565

Query:   427 KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486
             + +KT   HA+K L +++ K  +   LG NG GK+TTI  LTG+   T GDAL+YG S+ 
Sbjct:   566 RPKKT--VHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPTAGDALVYGHSVI 623

Query:   487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
             S+++   +++   V PQ +ILW  ++  EHL LF+ +KG+P    +S
Sbjct:   624 SNIAA--VRRITSVVPQHDILWAEMTAREHLQLFSELKGIPAQERES 668

GO:0005615 "extracellular space" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E1BKP0 ABCA5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
 Identities = 38/103 (36%), Positives = 62/103 (60%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +K     A++ L  +I + Q+  LLG +G GK+T ++ L G+ P + G A IYG  +   
Sbjct:   489 KKGENVEALRSLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSEGFASIYGHRVSEI 548

Query:   489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
               M   +K IG+CPQ +I +D L+ EE+L + A+IKG+P + +
Sbjct:   549 DEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANDV 591

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|Q8WWZ7 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
 Identities = 46/126 (36%), Positives = 73/126 (57%)

Query:   406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
             A++I G+ KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++
Sbjct:   477 AIRISGIQKTY---RKKG--------ENVEALRNLSFDIYEGQITALLGHSGTGKSTLMN 525

Query:   466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
              L G+ P + G A IYG  +     M   +K IG+CPQ +I +D L+ EE+L + A+IKG
Sbjct:   526 ILCGLCPPSDGFASIYGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKG 585

Query:   526 LPLDSI 531
             +P ++I
Sbjct:   586 IPANNI 591

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005764 "lysosome" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=ISS

GO:0033344 "cholesterol efflux" evidence=ISS

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISS

GO:0043691 "reverse cholesterol transport" evidence=IC

UNIPROTKB|E7ETD3 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
 Identities = 46/126 (36%), Positives = 73/126 (57%)

Query:   406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
             A++I G+ KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++
Sbjct:   477 AIRISGIQKTY---RKKG--------ENVEALRNLSFDIYEGQITALLGHSGTGKSTLMN 525

Query:   466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
              L G+ P + G A IYG  +     M   +K IG+CPQ +I +D L+ EE+L + A+IKG
Sbjct:   526 ILCGLCPPSDGFASIYGHRVSEIDEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKG 585

Query:   526 LPLDSI 531
             +P ++I
Sbjct:   586 IPANNI 591

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R172 ABCA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 188 (71.2 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
 Identities = 45/126 (35%), Positives = 73/126 (57%)

Query:   406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
             A++I G+ KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++
Sbjct:   477 AIRISGIQKTY---RKKG--------ENVEALRSLSFDIYEGQITALLGHSGTGKSTLMN 525

Query:   466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
              L G+ P + G A IYG  +     M   +K IG+CPQ +I +D L+ EE+L + A+IKG
Sbjct:   526 ILCGLCPPSDGFASIYGHRVSEIDEMFEARKIIGICPQLDIHFDVLTVEENLSILASIKG 585

Query:   526 LPLDSI 531
             +P +++
Sbjct:   586 IPANNV 591

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|K7GMQ1 LOC100738613 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 1.6e-26, Sum P(3) = 1.6e-26
 Identities = 38/103 (36%), Positives = 63/103 (61%)

Query:   429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +K     A++ L  +I + Q+  LLG +G GK+T ++ L G+ P + G A IYG  +   
Sbjct:   489 KKGENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASIYGHRVSEI 548

Query:   489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
               M   +K IG+CPQ +I +D L+ EE+L + A+IKG+P +++
Sbjct:   549 DEMFEARKMIGICPQLDIHFDVLTVEENLSILASIKGIPANNV 591

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84K47	AB2A_ARATH	No assigned EC number	0.7383	0.9944	0.5422	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATATH1	ATATH1; ATPase, coupled to transmembrane movement of substances / transporter; member of ATH subfamily (983 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATNAP5	ATNAP5; ATPase, coupled to transmembrane movement of substances / transporter; member of NAP su [...] (324 aa)							•		0.677
	ABC1At	ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa)							•		0.623
	AT1G08400	chromosome structural maintenance protein-related; chromosome structural maintenance protein-re [...] (804 aa)							•		0.563
	MAG2	MAG2 (maigo2); Involved in transportation of seed storage proteins from the ER to the vacuole. [...] (795 aa)							•		0.538
	anac053	anac053 (Arabidopsis NAC domain containing protein 53); transcription factor; Arabidopsis NAC d [...] (549 aa)				•					0.513
	AtSec20	AtSec20; AtSec20; FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 24 plant structures; [...] (293 aa)							•		0.510
	ATZW10	ATZW10; homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome [...] (742 aa)							•		0.435
	CCMH	CCMH; oxidoreductase; Encodes a protein with oxidoreductase activity present in the inner membr [...] (159 aa)							•		0.435
	GCN1	ATGCN1; transporter; member of GCN subfamily (595 aa)							•	•	0.420
	AT5G35690	unknown protein; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- WLM (Inter [...] (603 aa)				•					0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	536
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-42
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-34
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-23
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-23
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-22
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-21
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-17
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	2e-16
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	5e-13
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	9e-13
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-11
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	6e-11
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	9e-11
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-10
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-10
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	9e-10
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-09
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-09
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-09
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-09
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	3e-09
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	5e-09
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	1e-08
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-08
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-08
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-08
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-08
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-08
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	5e-08
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	6e-08
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-08
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	8e-08
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	9e-08
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-08
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-07
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-07
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-07
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-07
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	2e-07
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	3e-07
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	3e-07
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-07
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	4e-07
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-07
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	6e-07
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	6e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	7e-07
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	8e-07
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	9e-07
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-07
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-06
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-06
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-06
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-06
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-06
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-06
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-06
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	2e-06
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-06
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	5e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-05
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-05
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-05
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-05
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	3e-05
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-05
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	3e-05
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-05
COG4988	559	COG4988, CydD, ABC-type transport system involved	4e-05
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	5e-05
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	5e-05
pfam00005	119	pfam00005, ABC_tran, ABC transporter	7e-05
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	8e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	9e-05
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-04
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-04
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-04
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	2e-04
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-04
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	3e-04
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	3e-04
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	4e-04
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	4e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	4e-04
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	5e-04
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	6e-04
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	6e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	6e-04
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	7e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	8e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	0.001
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	0.001
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	0.001
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	0.001
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	0.001
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	0.002
COG4987	573	COG4987, CydC, ABC-type transport system involved	0.002
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	0.003
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	0.003
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.003
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	0.003
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	0.003
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.004
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	0.004
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	0.004
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	0.004
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	0.004
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	0.004

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  151 bits (383), Expect = 1e-42
 Identities = 53/130 (40%), Positives = 71/130 (54%), Gaps = 15/130 (11%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +QIR L KT+    K              A+  L +N+ K ++F LLG NGAGKTTT+  
Sbjct: 1   LQIRNLTKTYKKGTK-------------PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKM 47

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           LTG    T G A I G+SIR+       ++S+G CPQF+ L+D L+  EHL  +A +KGL
Sbjct: 48  LTGELRPTSGTAYINGYSIRT--DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL 105

Query: 527 PLDSIKSVCA 536
           P   IK    
Sbjct: 106 PKSEIKEEVE 115

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  137 bits (347), Expect = 3e-34
 Identities = 107/411 (26%), Positives = 183/411 (44%), Gaps = 32/411 (7%)

Query: 116  RIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSS 175
            R  P F +   ++     + S+V EKEL+L++ +   G+ ++  W +W     +++ +S 
Sbjct: 653  RCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSI 712

Query: 176  LFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFI 235
              + IF M  +     ++ F +LFL    F        F+ S F SK+S +      ++ 
Sbjct: 713  FLLTIFIMHGRI-LHYSDPF-ILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYF 770

Query: 236  VGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRA 295
              +L  ++    F + D+ +   +T  SL  P       + L    E  Q +G+ WS   
Sbjct: 771  TLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEE--QGLGLQWSNIG 825

Query: 296  ECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGK 355
                   E    ++   + L A   ++ +LA YLD + P   G     ++ L+  YW G 
Sbjct: 826  NSPLEGDEFSFLLSMKMMLLDAA--LYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGG 883

Query: 356  GGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKT 415
             G    E        ++   E +T + ED    E +        +P     V ++ LVK 
Sbjct: 884  EGCSTREER------ALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNLVKI 937

Query: 416  F-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
            F P  R               A+  L +   ++Q+   LG NGAGKTTT+S LTG+ P T
Sbjct: 938  FEPSGRP--------------AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT 983

Query: 475  GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
             G  L+ G  I +++    +++S+G+CPQ NIL+  L+  EH+  +A +KG
Sbjct: 984  SGTVLVGGKDIETNLDA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  LVK +                   A++G+   + + ++F LLGPNGAGKTTTI  
Sbjct: 1   IEVENLVKKYGDFE---------------AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKM 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           LT +   T G A + G  +        +++ IG+  Q   + D L+G E+L++ A + G+
Sbjct: 46  LTTLLKPTSGRATVAGHDVVREP--REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV 103

Query: 527 P 527
           P
Sbjct: 104 P 104

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 98.1 bits (245), Expect = 9e-23
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 16/130 (12%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            +++R L K + G +               A+ G+   +   ++F LLGPNGAGKTT + 
Sbjct: 4   VIEVRNLTKKYGGDKT--------------ALDGVSFEVEPGEIFGLLGPNGAGKTTLLK 49

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
            L G+   T G+ L+ G+ +        +++ IG  PQ   L+  L+  E+L  FA + G
Sbjct: 50  ILAGLLKPTSGEILVLGYDVVK--EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG 107

Query: 526 LPLDSIKSVC 535
           L  +  +   
Sbjct: 108 LSKEEAEERI 117

Length = 293

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  100 bits (251), Expect = 3e-22
 Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 20/162 (12%)

Query: 373  PPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTS 432
            P  E I  +D+DV EE    +Q+I       ++ +++  L K + GT           +S
Sbjct: 1909 PAKEPIFDEDDDVAEE----RQRIISGGNKTDI-LRLNELTKVYSGT-----------SS 1952

Query: 433  PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMT 492
            P  A+  L V +   + F LLG NGAGKTTT   LTG T VT GDA + G SI +++S  
Sbjct: 1953 P--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS-- 2008

Query: 493  NIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
            ++ +++G CPQF+ + D L+G EHL+L+A ++G+P + I+ V
Sbjct: 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV 2050

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 90.5 bits (226), Expect = 3e-21
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 17/113 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R L K +                   A+  + + + K +++ LLGPNGAGKTT I  
Sbjct: 1   IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKI 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519
           + G+     G+  + G  I+       +++ IG  P+   L++ L+  E+L L
Sbjct: 46  ILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYLPEEPSLYENLTVRENLKL 96

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+ G+   + + ++F  LGPNGAGKTTTI  LT +   T G A + G+ +        ++
Sbjct: 8   AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR--KVR 65

Query: 496 KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
           +SIG+ PQ+  + + L+G E+L +   + GLP D  + 
Sbjct: 66  RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEE 103

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   L KT+ G +                +  + +++ K +++  LGPNGAGKTTT+  
Sbjct: 1   LKTNDLTKTY-GKK--------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKI 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           + G+     G+    G   +S        + IG   +    +  L+  E+L L A + G+
Sbjct: 46  ILGLIKPDSGEITFDG---KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI 102

Query: 527 PLDSIKSV 534
               I  V
Sbjct: 103 RKKRIDEV 110

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 38/263 (14%)

Query: 66  EDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAV 125
             P  K    +    E   A+  + +   +      E              +       +
Sbjct: 54  ASPEVKVAQKVDSEEE---AKKALKNAPVNV-----EITPLFNPNSGYAYYLLGLLLFLL 105

Query: 126 AMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMF 185
            + G +    S+V EKE ++++ + + G+    Y L  +  +  + L+  L I++   +F
Sbjct: 106 ILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLIILLL--LF 163

Query: 186 QFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTA 245
                  N    L LLF L+ L       +  +    S ++  +   + I+  L      
Sbjct: 164 GLGIPFGNLLL-LLLLFLLYGLAYIALGALLGSLFKNSEAAILV---ISILILLLSGFFG 219

Query: 246 FGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECV 305
             FP  +   +  + I+S+ P     + L  +        +I +S               
Sbjct: 220 GLFPLPN-MPSFLQWIFSIIPFFAPIDGLLRI--IYGDLAEILLSL-------------- 262

Query: 306 ITINDIYIWLVATFFVWFILAIY 328
                  I L+    V  +LA+ 
Sbjct: 263 -------IILLLFGVVLLLLALL 278

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 67.4 bits (165), Expect = 9e-13
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +    L K F   +K              A+ G+   +   ++  LLGPNGAGKTTT+  
Sbjct: 2   ITADALTKRFRDVKK-----------TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRM 50

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           L G+     G A + GF           ++ +G       L+D L+  E+L  FA + GL
Sbjct: 51  LAGLLEPDAGFATVDGF--DVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL 108

Query: 527 PLDSIK 532
             D + 
Sbjct: 109 KGDELT 114

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
            A+  + + +   ++  L+GPNG+GK+T +  + G+   T G+ LI G  I + + +  +
Sbjct: 13  TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-AKLPLEEL 71

Query: 495 QKSIGVCPQFNILWDALSG 513
           ++ IG  PQ       LSG
Sbjct: 72  RRRIGYVPQ-------LSG 83

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW 508
           ++ LLGPNGAGKTT +  L  +TP + G   I G  +        +++ IG  PQ   ++
Sbjct: 27  MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK--QPQKLRRRIGYLPQEFGVY 84

Query: 509 DALSGEEHLHLFANIKGLP 527
              +  E L   A +KG+P
Sbjct: 85  PNFTVREFLDYIAWLKGIP 103

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 60.5 bits (148), Expect = 9e-11
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  L ++I   ++  +LGPNGAGK+T +  L G+   + G+ L+ G  + +S+S   + +
Sbjct: 15  LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-ASLSPKELAR 73

Query: 497 SIGVCPQ----FNIL------WDALSGEE 515
            I   PQ      +       ++ LSG E
Sbjct: 74  KIAYVPQALELLGLAHLADRPFNELSGGE 102

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 25/122 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++GL KT+   R               A+  L + +   +   LLGP+G GKTT +  
Sbjct: 1   LELKGLSKTYGSVR---------------ALDDLSLTVEPGEFLALLGPSGCGKTTLLRL 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           + G+     G+ LI G   R    +   +++IG+  Q   L+       HL +  NI   
Sbjct: 46  IAGLERPDSGEILIDG---RDVTGVPPERRNIGMVFQDYALFP------HLTVAENI-AF 95

Query: 527 PL 528
            L
Sbjct: 96  GL 97

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 432 SPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM 491
           S   A++ +     + ++  LLG NGAGKTT +  +  +     G   I G         
Sbjct: 13  SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT-VRDPS 71

Query: 492 TNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
              +K IGV      L+  L+  E+L  FA + GL
Sbjct: 72  FVRRK-IGVLFGERGLYARLTARENLKYFARLNGL 105

Length = 245

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 58.6 bits (143), Expect = 9e-10
 Identities = 22/83 (26%), Positives = 40/83 (48%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
            A++G+ + + + ++  LLG NGAGKTT +  + G+     G  +  G  I         
Sbjct: 17  QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76

Query: 495 QKSIGVCPQFNILWDALSGEEHL 517
           +  I   P+   ++  L+ EE+L
Sbjct: 77  RLGIAYVPEGRRIFPRLTVEENL 99

Length = 237

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 20/127 (15%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           A++I G+ K+F G                 A+  +   +   ++F LLGPNGAGKTTT  
Sbjct: 2   ALEIEGVTKSF-GD--------------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFR 46

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
            + G+   T G+    G  +        I+  IG  P+   L+  ++ E+ L   A +KG
Sbjct: 47  MILGLLEPTEGEITWNGGPLS-----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101

Query: 526 LPLDSIK 532
           +P   I+
Sbjct: 102 MPKAEIQ 108

Length = 300

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMT 492
              A+  +  ++ K ++F LLGPNGAGKTTTI  + GI     G+ L  G      + + 
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG----KPLDIA 67

Query: 493 NIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
              + IG  P+   L+  +   + L   A +KGL  +  + 
Sbjct: 68  ARNR-IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR 107

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++RGL K F G                 A+  +  ++   ++  L+GPNGAGKTT  + +
Sbjct: 2   EVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI 46

Query: 468 TGITPVTGG 476
           +G    T G
Sbjct: 47  SGFLRPTSG 55

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
              + G+ + + + ++  LLG NGAGKTT +  + G+ P   G     G  I        
Sbjct: 13  SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72

Query: 494 IQKSIGVCPQFNILWDALSGEEHLHL 519
            +  IG  P+   ++  L+ EE+L L
Sbjct: 73  ARAGIGYVPEGRRIFPELTVEENLLL 98

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  +   +   +   LLGPNGAGK+T  S LT +     G   + G  +R +       
Sbjct: 16  ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR--AAL 73

Query: 496 KSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527
             +GV  Q   L   LS  ++L   A + GL 
Sbjct: 74  ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN-- 493
           A+  +     K ++   LGPNGAGK+TT+  +TG  P   G   + G  +     + N  
Sbjct: 17  ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-----LQNPK 71

Query: 494 -IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
            +Q++IG  P+ N L+  +   E+L   A I G+    +K 
Sbjct: 72  EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ 112

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 26/119 (21%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ + K+F                    +K + ++I   +   LLGP+G GK+T + 
Sbjct: 3   ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLR 47

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQK-SIGVCPQFNILWDALSGEEHLHLFANI 523
            + G+   T G+ LI G      V+    +K  I +  Q   L+       H+ ++ NI
Sbjct: 48  MIAGLEEPTSGEILIDG----RDVTDLPPEKRGIAMVFQNYALYP------HMTVYENI 96

Length = 338

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  L  +I K ++  +LGPNG+GK+T + CL G+     G+ L+ G  I S      + K
Sbjct: 18  LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK-ELAK 76

Query: 497 SIGVCPQ 503
            +   PQ
Sbjct: 77  KLAYVPQ 83

Length = 258

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+KG+   I K ++   +GPNGAGKTTT+  L+G+   T G+  + G             
Sbjct: 36  ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL--VPWKRRKKFL 93

Query: 496 KSIG-VCPQFNILWDALSGEEHLHLFANIKGLP 527
           + IG V  Q   LW  L   +  +L A I  LP
Sbjct: 94  RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLP 126

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
           P  A++IR + K+F                   A+  + ++I K +   LLGP+G GKTT
Sbjct: 2   PKPALEIRNVSKSFGDFT---------------AVDDISLDIKKGEFVTLLGPSGCGKTT 46

Query: 463 TISCLTGITPVTGGDALIYGFSI 485
            +  + G    + G+ L+ G  I
Sbjct: 47  LLRMIAGFEQPSSGEILLDGEDI 69

Length = 352

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           + GL  ++ + + F LLGPNGAGKTTT+  L G+T    G   + G  + S       ++
Sbjct: 23  VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA--RQ 80

Query: 497 SIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK 532
            +GV PQF+ L    +  E+L +F    GL   + +
Sbjct: 81  RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAAR 116

Length = 306

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
           +  ++ +   +   +   ++GPNGAGK+T +  + G+   T G   ++G  +        
Sbjct: 12  HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------K 65

Query: 494 IQKSIGVCPQ-FNILWDA-LSGEE 515
            +K IG  PQ  +I  D  +S  +
Sbjct: 66  ERKRIGYVPQRRSIDRDFPISVRD 89

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 17/104 (16%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ L KT+PG  +              A+K + + I + ++  ++GP+GAGK+T + 
Sbjct: 3   MIEVKNLSKTYPGGHQ--------------ALKDVNLEINQGEMVAIIGPSGAGKSTLLR 48

Query: 466 CLTGITPVTGGDALIYGFSI--RSSVSMTNIQKSIG-VCPQFNI 506
            L G+   T G+ L  G  I       +  +++ IG +  QFN+
Sbjct: 49  SLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92

Length = 258

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMT-N 493
            A+  + + + K+ ++ LLGPNGAGK+T +  +TGI   T G+ +  G         T  
Sbjct: 14  TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH------PWTRK 67

Query: 494 IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV 534
               IG   +   L++ L+  E+L +   + GLP   I  V
Sbjct: 68  DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEV 108

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ L KT+ G  +              A+KG+ ++I K +   ++GP+G+GK+T ++ 
Sbjct: 1   IELKNLSKTYGGGGE-----------KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNI 49

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANI 523
           L G+   T G+  + G  I   S   +    ++ IG   Q   L   L+  E++ L   +
Sbjct: 50  LGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLL 109

Query: 524 KGLPLDSIK 532
            G+P    +
Sbjct: 110 AGVPKKERR 118

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 14/105 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + K F  T                A+K + +++ K ++F ++G +GAGK+T I C
Sbjct: 2   IELKNVSKVFGDTGGKV-----------TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRC 50

Query: 467 LTGITPVTGGDALIYGFSI--RSSVSMTNIQKSIG-VCPQFNILW 508
           + G+   T G  L+ G  +   S   +   ++ IG +   FN+L 
Sbjct: 51  INGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
             VA+ + G+ K++    K               + GL   +A  + F LLGPNGAGK+T
Sbjct: 38  STVAIDLAGVSKSYGD--KA-------------VVNGLSFTVASGECFGLLGPNGAGKST 82

Query: 463 TISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522
               + G+T    G   + G  + +   +   +  IGV PQF+ L    +  E+L +F  
Sbjct: 83  IARMILGMTSPDAGKITVLGVPVPARARLA--RARIGVVPQFDNLDLEFTVRENLLVFGR 140

Query: 523 IKGLPLDSIKSV 534
             G+    I++V
Sbjct: 141 YFGMSTREIEAV 152

Length = 340

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 51.3 bits (124), Expect = 9e-08
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 40/144 (27%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++RG+ K F G                 A+ G+ +++ + ++  LLG NGAGK+T +  
Sbjct: 1   LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKI 45

Query: 467 LTGITPVTGGDALIYG--FSIRS---------------SVS---MTNIQKSIGVCPQFNI 506
           L+G+     G+ L+ G   S  S               SV    M  I +++    +  I
Sbjct: 46  LSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105

Query: 507 LWD----ALSGEEHLHLFANIKGL 526
           L D    AL+  E   LF  I+ L
Sbjct: 106 L-DEPTAALTPAEVERLFKVIRRL 128

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 17/120 (14%)

Query: 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468
              L K + G RK+              + G+ +++ + ++  LLGPNGAGKTTT   + 
Sbjct: 3   AENLSKRY-GKRKV--------------VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV 47

Query: 469 GITPVTGGDALIYGFSIRSSVSM-TNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP 527
           G+     G  L+ G  I + + M    +  IG  PQ   ++  L+ EE++     I+GL 
Sbjct: 48  GLVKPDSGKILLDGQDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS 106

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++  L KT+P  +               A+K + ++I   +   L+GP+GAGK+T + CL
Sbjct: 2   EVENLSKTYPNGK--------------KALKDVSLSINPGEFVALIGPSGAGKSTLLRCL 47

Query: 468 TGITPVTGGDALIYGFSIRS 487
            G+   T G  LI G  I  
Sbjct: 48  NGLVEPTSGSVLIDGTDINK 67

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
           + A+  L  ++   +L  L+GPNGAGKTT +  +TG T    G+ L  G +  + +    
Sbjct: 18  FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77

Query: 494 IQKSIGVCPQFNI--LWDALSGEEHLHLFANIK 524
           I +  G+  +F    +++ L+  E+L L  N  
Sbjct: 78  IAR-AGIGRKFQKPTVFENLTVRENLELALNRD 109

Length = 249

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  + K F                   A+  L ++IA  +   LLGP+G GKTTT+  
Sbjct: 1   VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRM 45

Query: 467 LTGITPVTGGDALIYG 482
           + G+   T G   I G
Sbjct: 46  IAGLEEPTSGRIYIGG 61

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
           H ++G+ + + K ++ C+LG NG GKTT +  L G+ PV  G   + G  I         
Sbjct: 14  HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73

Query: 495 QKSIGVCPQFNILWDALSGEEHL 517
           +  I   PQ   ++  L+ EE+L
Sbjct: 74  RAGIAYVPQGREIFPRLTVEENL 96

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           NVA+ + G+ K++    K+              +  L   IA+ + F LLGPNGAGK+T 
Sbjct: 2   NVAIDLVGVSKSYGD--KV-------------VVNDLSFTIARGECFGLLGPNGAGKSTI 46

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523
              L G+     G   + G  + S   +  +   IGV PQF+ L    +  E+L +F   
Sbjct: 47  ARMLLGMISPDRGKITVLGEPVPSRARLARVA--IGVVPQFDNLDPEFTVRENLLVFGRY 104

Query: 524 KGLPLDSIKSV 534
            G+    I++V
Sbjct: 105 FGMSTREIEAV 115

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486
           + A+  L + +   +L  ++GPNGAGKTT +  +TG T    G  L  G  + 
Sbjct: 15  FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 24/124 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++RGL K+F G R +              +KG+ +++ + ++  ++GP+G+GK+T +  
Sbjct: 1   IELRGLTKSF-GGRTV--------------LKGVDLDVRRGEILAIIGPSGSGKSTLLRL 45

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524
           + G+     G+ LI G  I   S   +  +++ +G+  Q   L+D+L+      +F N+ 
Sbjct: 46  IVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT------VFENV- 98

Query: 525 GLPL 528
             PL
Sbjct: 99  AFPL 102

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
           A+  + + + + ++  L+GPNGAGKTT  +CLTG    TGG  L+ G  I
Sbjct: 20  AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69

Length = 255

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 17/101 (16%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I+ L K+F                 +H +KG+ + + K ++  ++GP+G+GK+T + C
Sbjct: 1   IEIKNLHKSF---------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRC 45

Query: 467 LTGITPVTGGDALIYGFSI-RSSVSMTNIQKSIG-VCPQFN 505
           +  +     G  +I G  +     ++  +++ +G V  QFN
Sbjct: 46  INLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN 86

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 21/107 (19%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
            A+ G+ ++I + + F LLGP+G GKTT +  + G    T G+ L+ G        +TN+
Sbjct: 14  VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG------KDITNL 67

Query: 495 ---QKSIGVCPQFNILWDALSGEEHLHLFANI------KGLPLDSIK 532
              ++ +    Q   L+       HL +F NI      K LP   IK
Sbjct: 68  PPHKRPVNTVFQNYALF------PHLTVFENIAFGLRLKKLPKAEIK 108

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 49.3 bits (119), Expect = 6e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K + + I   +   ++GP+G+GK+T +  L  +   T G+ LI G  +R  + + +++
Sbjct: 17  VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR-DLDLESLR 75

Query: 496 KSIGVCPQFNILWDA------LSG 513
           K+I   PQ   L+        LSG
Sbjct: 76  KNIAYVPQDPFLFSGTIRENILSG 99

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             +K +  +I   +   ++GP GAGKTT I+ L        G  LI G  IR  +S  ++
Sbjct: 17  PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DISRKSL 75

Query: 495 QKSIGVCPQFNILWDALSGEEHLHLFANIK 524
           +  IGV  Q   L    SG     +  NI+
Sbjct: 76  RSMIGVVLQDTFL---FSGT----IMENIR 98

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 452 LLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD 509
           ++GP+GAGK+T ++ L G        G+ LI G  +       + +K IG  PQ +IL  
Sbjct: 40  IMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL----DKRSFRKIIGYVPQDDILHP 95

Query: 510 ALSGEEHLHLFANIKGL 526
            L+  E L   A ++GL
Sbjct: 96  TLTVRETLMFAAKLRGL 112

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 11/80 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R + KT+ G                 A++ + +++ + +   L+GP+G GK+T +  
Sbjct: 1   LEVRNVSKTYGG-----------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRI 49

Query: 467 LTGITPVTGGDALIYGFSIR 486
           + G+   T G+ L+ G  + 
Sbjct: 50  IAGLERPTSGEVLVDGEPVT 69

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 51.0 bits (123), Expect = 9e-07
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 15/115 (13%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
            A+++RG+ K FPG                 A   + +++ K ++  LLG NGAGK+T +
Sbjct: 3   PALEMRGITKRFPGV---------------VANDDVSLSVKKGEIHALLGENGAGKSTLM 47

Query: 465 SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519
             L G+     G+  + G  +R       I+  IG+  Q  +L   L+  E++ L
Sbjct: 48  KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIIL 102

Length = 501

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 16/100 (16%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I+ L K+F                    +KG+ +++ K ++  ++GP+G+GK+T + C
Sbjct: 3   IEIKNLSKSF---------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRC 47

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-FN 505
           L G+     G   + G  +     +  +++ +G+  Q FN
Sbjct: 48  LNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87

Length = 240

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++RGL K F G                 A+  + + +   ++  L+GPNGAGKTT  + +
Sbjct: 6   EVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLI 50

Query: 468 TGITPVTGG 476
           TG    + G
Sbjct: 51  TGFYKPSSG 59

Length = 250

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 13/105 (12%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + KTF  T           T    A+  + + I K ++F ++G +GAGK+T +  
Sbjct: 2   IELENVSKTFGQTG----------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRL 51

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQ-FNILW 508
           +  +   T G   + G  +   S   +  +++ IG+  Q FN+L 
Sbjct: 52  INLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96

Length = 339

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF 483
           K     A++ +   I K ++   LG NGAGK+TT+  LTG+   T G   + G 
Sbjct: 33  KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86

Length = 325

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTT---TISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
           +  + +++   Q+  +LG +G+GKTT    IS        T G  L  G           
Sbjct: 23  LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG----QPRKPDQ 78

Query: 494 IQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
            QK +    Q +IL   L+  E L   A ++ 
Sbjct: 79  FQKCVAYVRQDDILLPGLTVRETLTYTAILRL 110

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+K + + I K +   L+GPNG+GK+T +  L G+   T G+ L+ G    S  S+  ++
Sbjct: 19  ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78

Query: 496 KSIGVCPQF 504
           + +G+  Q 
Sbjct: 79  QKVGLVFQN 87

Length = 235

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 448 QLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN 505
            L  L+G +GAGKTT +  L G     V  G+ LI G  +       N Q+S G   Q +
Sbjct: 34  TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK-----NFQRSTGYVEQQD 88

Query: 506 ILWDALSGEEHLHLFANIKGL 526
           +    L+  E L   A ++GL
Sbjct: 89  VHSPNLTVREALRFSALLRGL 109

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 24/129 (18%)

Query: 402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKT 461
            P   +++RG+ K+F G R I              + G+ +++ + ++  +LG +G+GK+
Sbjct: 4   SPEPLIEVRGVTKSF-GDRVI--------------LDGVDLDVPRGEILAILGGSGSGKS 48

Query: 462 TTISCLTGITPVTGGDALIYGFSIRSSVSMTN--IQKSIGVCPQFNILWDALSGEEHLHL 519
           T +  + G+     G+ LI G  I          I+K +GV  Q   L+ +L+      +
Sbjct: 49  TLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLT------V 102

Query: 520 FANIKGLPL 528
           F N+   PL
Sbjct: 103 FENV-AFPL 110

Length = 263

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 15/83 (18%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
               +    L K++   RK+              +  + + +   ++  LLGPNGAGKTT
Sbjct: 1   DMSTLVAENLAKSY-KKRKV--------------VNDVSLEVNSGEIVGLLGPNGAGKTT 45

Query: 463 TISCLTGITPVTGGDALIYGFSI 485
           T   + G+     G  L+    I
Sbjct: 46  TFYMIVGLVRPDSGKILLDDEDI 68

Length = 243

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  L K +P  +               A+K + +NI   +   ++GP+GAGK+T + C
Sbjct: 2   LEVENLSKVYPNGK--------------QALKNINLNINPGEFVAIIGPSGAGKSTLLRC 47

Query: 467 LTGITPVTGGDALIYGFSIR 486
           +  +   + G  L+ G  I 
Sbjct: 48  INRLVEPSSGSILLEGTDIT 67

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 397 RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPN 456
           R         + +R L K +   + +      ++     A+  +  ++ + +   L+G +
Sbjct: 271 RRGPLRAEPLLSVRNLSKRYGSRKGLFV----RERGEVKAVDDVSFDLREGETLGLVGES 326

Query: 457 GAGKTTTISCLTGITPVTGGDALIYG 482
           G+GK+T    L G+ P + G  +  G
Sbjct: 327 GSGKSTLARILAGLLPPSSGSIIFDG 352

Length = 539

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 15/84 (17%)

Query: 399 SIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGA 458
                   +++RG+ K+F G                 A+ G+ + +   ++  LLG NGA
Sbjct: 1   MTMSTPPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGA 45

Query: 459 GKTTTISCLTGITPVTGGDALIYG 482
           GK+T +  L+G+ P   G+ LI G
Sbjct: 46  GKSTLMKILSGVYPPDSGEILIDG 69

Length = 500

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR-SSVSMT 492
             A+KG+     K ++  LLGPNGAGK+T      GI   T G+ LI G  I+    S+ 
Sbjct: 15  TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLL 74

Query: 493 NIQKSIGVCPQ 503
            ++K++G+  Q
Sbjct: 75  EVRKTVGIVFQ 85

Length = 275

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR-SSVSMTN 493
           HA+KG+ +NI K ++  +LG NGAGK+T    L GI   + G  L  G  I  S   +  
Sbjct: 20  HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79

Query: 494 IQKSIGVCPQ 503
           +++S+G+  Q
Sbjct: 80  LRESVGMVFQ 89

Length = 283

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  + + I K +   ++GPNG+GK+T +  L G+   T G+ L+ G  +    S+  ++
Sbjct: 16  ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL-SLKELR 74

Query: 496 KSIGV 500
           + +G+
Sbjct: 75  RKVGL 79

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 385 VLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI 444
           VL+               P  +++  G+   +PG R               A++ +   +
Sbjct: 300 VLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRP--------------ALRPVSFTV 345

Query: 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
              +   L+GP+GAGK+T ++ L G    T G   + G
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 15/76 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + K +                    +  + +NI   ++  LLGP+G+GK+T + C
Sbjct: 1   LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRC 45

Query: 467 LTGITPVTGGDALIYG 482
           + G+     G  LI G
Sbjct: 46  IAGLEEPDSGSILIDG 61

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 20/135 (14%)

Query: 407 VQIRGLVKTFP-------GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           +++  + K++P         +K+G   +  +   + A+K +   + + +   L+G NGAG
Sbjct: 1   IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60

Query: 460 KTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519
           K+T +  L GI P   G   + G  + S + +       G  P+       L+G E+++L
Sbjct: 61  KSTLLRLLAGIYPPDSGTVTVRG-RVSSLLGLG-----GGFNPE-------LTGRENIYL 107

Query: 520 FANIKGLPLDSIKSV 534
              + GL    I   
Sbjct: 108 NGRLLGLSRKEIDEK 122

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ-F 504
           K +L  LLGPNGAGKTT +  + G+ P   G   + G S           + IG  PQ  
Sbjct: 5   KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG------WRHIGYVPQRH 58

Query: 505 NILWD 509
              WD
Sbjct: 59  EFAWD 63

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +   + + ++GPNGAGKTT +S LTG  P + GD  + G       ++  ++K IG+   
Sbjct: 54  VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV-- 111

Query: 504 FNILWDALSGEEHLHLFANIKGL 526
                   S E H          
Sbjct: 112 --------SSELHERFRVRETVR 126

Length = 257

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 383 EDVLEEENMVKQQ--IRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGL 440
             +LE            E   +P + + +  L   +P  +               A+  L
Sbjct: 295 FTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKP--------------ALSDL 340

Query: 441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGV 500
            + I   QL  L+G +GAGK+T ++ L G    T G+  + G  +R  +S    +K I  
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR-DLSPEAWRKQISW 399

Query: 501 CPQ 503
             Q
Sbjct: 400 VSQ 402

Length = 559

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-SVSMTNIQ 495
           +  + +NI + ++  ++GP+G+GK+T + C+  +  +T GD ++ G  +    V    I+
Sbjct: 17  LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76

Query: 496 KSIG-VCPQFNI 506
           +  G V  QF +
Sbjct: 77  QEAGMVFQQFYL 88

Length = 240

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 13/70 (18%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDAL 511
           +LGP+G+GK+T ++ L G+     G+  + G  + SS+    +++ + VC Q     DA 
Sbjct: 366 ILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPV-SSLDQDEVRRRVSVCAQ-----DA- 418

Query: 512 SGEEHLHLFA 521
                 HLF 
Sbjct: 419 ------HLFD 422

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 461 TTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF 520
           +T +  +TG+   T G  L+ G       S   ++K IGV  Q   L+  L+  E+L   
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 521 ANIK 524
              K
Sbjct: 61  LRDK 64

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 15/93 (16%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   + K + G +K              A+  L + IAK +   L+GP+G+GKTTT+  
Sbjct: 1   IEFENVTKRYGGGKK--------------AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKM 46

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIG 499
           +  +   T G+  I G  IR       +++ IG
Sbjct: 47  INRLIEPTSGEIFIDGEDIR-EQDPVELRRKIG 78

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+K +   I + +   +LG NG+GK+T    LTG+     G+  I G +I S  ++  I+
Sbjct: 24  ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI-SKENLKEIR 82

Query: 496 KSIGVCPQ 503
           K IG+  Q
Sbjct: 83  KKIGIIFQ 90

Length = 271

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 11/76 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ L  +FP                  A+  +  +I K +   L+G +G+GK+T    
Sbjct: 2   LEVKNLSVSFPT-----------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARA 50

Query: 467 LTGITPVTGGDALIYG 482
           + G+   T G  +  G
Sbjct: 51  ILGLLKPTSGSIIFDG 66

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
               ++++ L K FP  +  G      K     A+ G+  +I + +   L+G +G GK+T
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFG------KKRYVKAVDGVSFSIKEGETLGLVGESGCGKST 54

Query: 463 TISCLTGITPVTGG 476
               + G+   T G
Sbjct: 55  LGRLILGLEEPTSG 68

Length = 268

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             ++ + +++ K ++  L+GPNGAGK+T +  + G+   + G+  I+G  +R        
Sbjct: 18  PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---- 73

Query: 495 QKSIGVCPQ-FNILWD 509
           +  IG  PQ  ++   
Sbjct: 74  RLRIGYVPQKSSVDRS 89

Length = 254

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
             ++I G+ K+F G                  ++ + +++ K +   +LGP+G GK+T +
Sbjct: 2   ALLEIEGVSKSFGG---------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLL 46

Query: 465 SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
             + G+   T G+ L+ G  +            IG   Q
Sbjct: 47  RLIAGLEKPTSGEVLLDGRPVTG------PGPDIGYVFQ 79

Length = 248

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           A+ GL + IA+     ++G NGAGK+T ++ + G    T G  LI G
Sbjct: 21  ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG 67

Length = 263

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
            +KGL     + ++  LLG NGAGK+T +  L G+     G  LI G
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG 53

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 19/126 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + + G+ K+F                P HA+K + + +   ++  LLG NGAGK+T +  
Sbjct: 6   ISMAGIGKSFG---------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKV 50

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHL----HLFAN 522
           L+GI   T G   I   +          Q  IG+  Q   + D L+  E+L    HL   
Sbjct: 51  LSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKK 110

Query: 523 IKGLPL 528
           + G+ +
Sbjct: 111 VCGVNI 116

Length = 510

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           +LGPNGAGK+T +  L+G      G+  + G
Sbjct: 33  ILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63

Length = 258

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
           A+  + + I + +   L+GP+G+GKTTT+  +  +   T G+ LI G  I S +    ++
Sbjct: 16  AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI-SDLDPVELR 74

Query: 496 KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK 532
           + IG   Q   L+  L+  E++     + G   + IK
Sbjct: 75  RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIK 111

Length = 309

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 112 SAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYD-SAYWLSWLTWEGTL 170
             + R G  FF  +          S V  +E  + +      LY  SAY L+ +  E  +
Sbjct: 48  GGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPI 107

Query: 171 VLLSS-LFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTI 229
            LL + +F++I   M        + F +  L+  L  L  +G     +A       ++ I
Sbjct: 108 SLLQAIIFLLIVYFMVGLPV---SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQI 164

Query: 230 GFSVFIVGFL 239
           G  + +   L
Sbjct: 165 GPLLLLPLLL 174

Length = 210

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +K +   I   +   ++GP+G+GK+T +  L     V+ G  LI G  IR  V++ ++++
Sbjct: 17  LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE-VTLDSLRR 75

Query: 497 SIGVCPQFNILWDA 510
           +IGV PQ  +L++ 
Sbjct: 76  AIGVVPQDTVLFND 89

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ + K +                   A+K + + I   +   ++GP+G+GK+T ++
Sbjct: 1   MIELKNVSKIYG-----------LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN 49

Query: 466 CLTGITPVTGGDALIYGFSIR--SSVSMTNI-QKSIG-VCPQFNILWDALSGEEHLHLFA 521
            L G+   T G+ LI G  +   S   +  + +K IG V   FN+L   L+  E++ L  
Sbjct: 50  LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL-PDLTVLENVELPL 108

Query: 522 NIKGLPLDSIK 532
            I G      K
Sbjct: 109 LIAGKSAGRRK 119

Length = 226

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 23/95 (24%)

Query: 396 IRESIPDPNVAVQ--------IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKD 447
           + ++IP P    +        IR L K+F G                HA+  + + I K 
Sbjct: 1   MNDAIPRPQAKTRKALTPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKG 45

Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           ++F LLG +G GK+T +  L G    T G  ++ G
Sbjct: 46  EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG 80

Length = 377

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            + +R L   + G               +HA+  + + I + +   ++G +G+GK+T   
Sbjct: 3   LLSVRNLSIVYGG-----------GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLAR 51

Query: 466 CLTGITPVTGGDALIYG 482
            L G+   + G  L+ G
Sbjct: 52  LLAGLEKPSSGSILLDG 68

Length = 252

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
            A+KGL ++I +     LLGPNGAGK+T +  L GI     G   + G  +
Sbjct: 19  KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69

Length = 274

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 24/85 (28%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K + + + K +L  ++GP G+GK++ +S L G      G           SVS+    
Sbjct: 20  TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-----------SVSV---P 65

Query: 496 KSIGVCPQF----------NILWDA 510
            SI    Q           NIL+  
Sbjct: 66  GSIAYVSQEPWIQNGTIRENILFGK 90

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVC 501
           + +   ++  LLGPNGAGKTTT   + GI P   G+ +I    I         ++ IG  
Sbjct: 24  LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83

Query: 502 PQ 503
           PQ
Sbjct: 84  PQ 85

Length = 241

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 26/117 (22%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K +  +I   +   ++G  G+GK++ +  L  +  ++ G  LI G  I S + + +++
Sbjct: 19  VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI-SKIGLHDLR 77

Query: 496 KSIGVCPQ----------FNI----------LWDALSGEEHLHLFANIKGLP--LDS 530
             I + PQ           N+          LW AL   E + L   ++ LP  LD+
Sbjct: 78  SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQAL---ERVGLKEFVESLPGGLDT 131

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R L KTF     +       +     A+K +   + + Q   ++G NG+GK+T    
Sbjct: 5   LEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKM 58

Query: 467 LTGITPVTGGDALIYG 482
           L G+   T G+ LI  
Sbjct: 59  LAGMIEPTSGEILIND 74

Length = 267

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 15/63 (23%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           Q++G+ K FPG +               A+ G  +N+   ++  L+G NGAGK+T +  L
Sbjct: 6   QLKGIDKAFPGVK---------------ALSGAALNVYPGRVMALVGENGAGKSTMMKVL 50

Query: 468 TGI 470
           TGI
Sbjct: 51  TGI 53

Length = 501

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 26/135 (19%)

Query: 375 MEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPY 434
           +E    ++  V E + +  +          + ++   + K + G R +            
Sbjct: 290 LEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLL------------ 337

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             +K L   I +     ++GPNGAGK+T +  L G      G        +  +V     
Sbjct: 338 --LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-----TVKVGETV----- 385

Query: 495 QKSIGVCPQFNILWD 509
              IG   Q     D
Sbjct: 386 --KIGYFDQHRDELD 398

Length = 530

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)

Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI--- 485
           +KT     +    + IAK ++F ++G +G+GK+TT+  L  +   T G   I G +I   
Sbjct: 1   KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60

Query: 486 ---------RSSVSMTNIQKSIGVCPQFNIL 507
                    R  + M   Q+   + P   IL
Sbjct: 61  SPVELREVRRKKIGMV-FQQ-FALFPHMTIL 89

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDA- 510
           ++GP+G+GK+T    + G+   T G   + G  I S      +   +G  PQ + L+   
Sbjct: 33  IIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI-SQWDPNELGDHVGYLPQDDELFSGS 91

Query: 511 -----LSG 513
                LSG
Sbjct: 92  IAENILSG 99

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC------LTGITPVTGGDALIYGFSIRS 487
            HA+K + ++I K+++  L+GP+G GK+T + C      L     V  G+ L+ G +I  
Sbjct: 20  KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE-GEVLLDGKNIYD 78

Query: 488 -SVSMTNIQKSIG 499
             V +  +++ +G
Sbjct: 79  PKVDVVELRRRVG 91

Length = 253

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG--FSIR 486
           Q T    A+  + +++   Q++ ++G +GAGK+T I C+  +   T G  ++ G   +  
Sbjct: 13  QGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72

Query: 487 SSVSMTNIQKSIGVCPQ-FNILWDALSGEEHLHLFANIKGLPLD 529
           S+  +T  ++ IG+  Q FN+L           +F N+  LPL+
Sbjct: 73  SNSELTKARRQIGMIFQHFNLL-------SSRTVFGNV-ALPLE 108

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K +  +I   +   ++GP+G+GK+T I  L  +   T G+ LI G  IR  +S+ +++
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR-DISLDSLR 402

Query: 496 KSIGVCPQFNILWDA 510
           K IG+  Q  +L+  
Sbjct: 403 KRIGIVSQDPLLFSG 417

Length = 567

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
           + ++        E       A+++R +  T+PG                 A+K   + +A
Sbjct: 316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPG-------------QQTKALKNFNLTLA 362

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           + +   +LG +G+GK+T +  L G      G   + G  I  S+    ++++I V  Q
Sbjct: 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA-SLDEQALRETISVLTQ 419

Length = 573

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSI 498
           GL   +A  +   + GPNG+GKTT +  L G++P   G  L+ G  +       +I + +
Sbjct: 18  GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD--SIARGL 75

Query: 499 GVCPQFNILWDALSGEEHLHLFANIKG 525
                   +   LS  E+L  +     
Sbjct: 76  LYLGHAPGIKTTLSVLENLRFWHADHS 102

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +LGPNGAGK+T +  L+G      G+  + G  + +S     + +   V PQ
Sbjct: 32  ILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL-NSWPPEELARHRAVLPQ 82

Length = 259

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 12/61 (19%)

Query: 448 QLFCLLGPNGAGKTTTISCL-----TGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP 502
            L  L+G +GAGKTT ++ L     TG+  +TGGD L+ G  + SS      Q+SIG   
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLDSS-----FQRSIGYVQ 842

Query: 503 Q 503
           Q
Sbjct: 843 Q 843

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI 485
           +I++ ++  +LGPNG GKTT I  L G+     GD  I   ++
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
             +    A+  +     ++    ++GPNGAGK+T      GI   T G  LI G  I + 
Sbjct: 12  SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI-TK 70

Query: 489 VSMTNIQKSIGVCPQ 503
            ++  ++K +G+  Q
Sbjct: 71  ENIREVRKFVGLVFQ 85

Length = 277

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTG 475
           L+GPNGAGK+T ++ + G+ P +G
Sbjct: 27  LVGPNGAGKSTLLARMAGLLPGSG 50

Length = 248

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 23/103 (22%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTGGDALIYGFSIRSSVSMTNIQ 495
           +  L +++   ++  L+GPNG GK+T + C   + TP + G   +    I S +S   + 
Sbjct: 18  LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS-GTVFLGDKPI-SMLSSRQLA 75

Query: 496 KSIGVCPQ--------------------FNILWDALSGEEHLH 518
           + + + PQ                    +  LW  LS E++  
Sbjct: 76  RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118

Length = 255

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           + A+  + ++I   +L  LLGP+GAGK+T +  + G+     G
Sbjct: 15  FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAG 57

Length = 345

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTG 475
           P  A++ + + IA  +L  +LGP+G GKTT ++ + G +TP  G
Sbjct: 17  PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60

Length = 259

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           Q   ++GP GAGK+T I+ L  +     G  LI G  IR +V+  +++++I V  Q
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR-TVTRASLRRNIAVVFQ 416

Length = 588

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI------TPVTGGDALIYG 482
           HA+K + ++I K ++  L+GP+G GK+T +  L  +       P   G+ L+ G
Sbjct: 14  HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE-GEVLLDG 66

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	536
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.93
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.93
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.93
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.93
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.92
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.92
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.91
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.9
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.9
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.9
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.89
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.89
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.88
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.88
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.87
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.87
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.87
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.87
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.87
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.87
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.87
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.86
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.86
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.85
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.85
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.85
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.85
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.85
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.85
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.85
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.85
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.85
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.84
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.84
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.84
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.84
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.84
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.84
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.84
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.84
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.84
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.84
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.84
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.83
PRK10908	222	cell division protein FtsE; Provisional	99.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.83
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.83
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.83
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.83
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.83
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.83
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.83
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.83
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.83
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.83
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.83
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.83
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.83
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.83
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.83
PLN03140	1470	ABC transporter G family member; Provisional	99.83
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.83
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.82
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.82
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.82
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.82
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.82
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.82
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.82
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.82
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.82
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.82
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.82
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.82
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.82
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.82
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.82
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.81
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.81
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.81
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.81
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.81
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.81
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.81
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.81
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.81
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.81
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.81
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.81
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.81
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.8
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.8
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.8
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.8
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.8
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.8
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.8
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.8
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.8
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.8
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.8
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.8
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.8
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.8
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.8
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.8
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.8
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.8
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.8
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.8
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.8
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.8
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.8
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.8
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.79
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.79
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.79
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.79
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.79
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.79
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.79
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.79
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.79
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.79
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.79
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.79
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.79
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.79
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.79
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.78
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.78
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.78
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.78
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.78
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.78
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.78
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.78
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.78
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.78
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.78
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.78
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.78
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.78
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.78
cd03246	173	ABCC_Protease_Secretion This family represents the	99.78
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.78
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.78
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.78
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.78
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.78
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.78
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.78
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.78
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.78
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.77
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.77
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.77
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.77
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.77
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.77
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.77
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.77
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.77
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.77
COG4181	228	Predicted ABC-type transport system involved in ly	99.77
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.77
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.77
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.77
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.77
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.76
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.76
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.76
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.76
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.76
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.76
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.76
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.76
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.76
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.76
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.76
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.75
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.75
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.75
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.75
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.75
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.75
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.75
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.75
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.75
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.75
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.74
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.74
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.74
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.74
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.74
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.74
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.74
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.74
COG4559	259	ABC-type hemin transport system, ATPase component	99.74
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.74
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.74
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.74
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.74
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.74
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.74
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.74
PLN03211	659	ABC transporter G-25; Provisional	99.74
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.74
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.73
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.73
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.73
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.73
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.73
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.73
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.73
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.73
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.73
COG4988	559	CydD ABC-type transport system involved in cytochr	99.73
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.72
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.72
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.72
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.72
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.72
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.71
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.71
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.71
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.71
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.71
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.71
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.71
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.7
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.7
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.7
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.7
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.7
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.7
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.7
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.7
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.7
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.7
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.69
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.69
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.69
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.69
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.69
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.69
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.69
PLN03130	1622	ABC transporter C family member; Provisional	99.69
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.69
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.69
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.68
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.68
PLN03232	1495	ABC transporter C family member; Provisional	99.68
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.68
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.68
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.68
PTZ00243	1560	ABC transporter; Provisional	99.67
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.67
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.67
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.67
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.67
COG1123	539	ATPase components of various ABC-type transport sy	99.67
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.67
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.66
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.66
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.66
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.65
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.65
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.64
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.64
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.64
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.63
PRK10938	490	putative molybdenum transport ATP-binding protein	99.63
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.63
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.63
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.63
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.63
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.62
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.62
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.62
PRK10938	490	putative molybdenum transport ATP-binding protein	99.62
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.62
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.62
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.62
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.61
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.61
COG4987	573	CydC ABC-type transport system involved in cytochr	99.61
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.6
PRK11147	635	ABC transporter ATPase component; Reviewed	99.6
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.6
PLN03140	1470	ABC transporter G family member; Provisional	99.6
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.59
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.59
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.59
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.57
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.55
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.55
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.54
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.54
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.53
PRK13409	590	putative ATPase RIL; Provisional	99.53
COG1123	539	ATPase components of various ABC-type transport sy	99.52
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.51
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.51
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.5
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.5
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.5
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.5
PLN03073	718	ABC transporter F family; Provisional	99.5
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.49
COG0488	530	Uup ATPase components of ABC transporters with dup	99.47
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.46
PRK11147	635	ABC transporter ATPase component; Reviewed	99.45
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.44
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.44
COG4172	534	ABC-type uncharacterized transport system, duplica	99.42
PRK13409	590	putative ATPase RIL; Provisional	99.39
PLN03232	1495	ABC transporter C family member; Provisional	99.38
PLN03130	1622	ABC transporter C family member; Provisional	99.37
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.36
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.36
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.35
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.34
COG0488	530	Uup ATPase components of ABC transporters with dup	99.31
PLN03073	718	ABC transporter F family; Provisional	99.24
PTZ00243	1560	ABC transporter; Provisional	99.24
COG4172	534	ABC-type uncharacterized transport system, duplica	99.19
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.18
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.15
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.05
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.04
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.99
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.96
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.91
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.88
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.87
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.84
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.84
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.81
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.76
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.76
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.71
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.69
COG4178	604	ABC-type uncharacterized transport system, permeas	98.67
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.67
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.64
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.64
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.63
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.58
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.55
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.53
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.53
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.41
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.39
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.39
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.38
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.37
PRK09825	176	idnK D-gluconate kinase; Provisional	98.37
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.37
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.36
PRK10416	318	signal recognition particle-docking protein FtsY;	98.25
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.22
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.22
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.19
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.18
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.09
PRK08149	428	ATP synthase SpaL; Validated	98.08
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.07
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.05
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.05
KOG0062	582	consensus ATPase component of ABC transporters wit	98.04
PRK01889	356	GTPase RsgA; Reviewed	98.03
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.01
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.98
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.97
PRK09862	506	putative ATP-dependent protease; Provisional	97.97
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	97.97
PRK06315	442	type III secretion system ATPase; Provisional	97.95
KOG0062	582	consensus ATPase component of ABC transporters wit	97.94
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.94
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.94
PRK09099	441	type III secretion system ATPase; Provisional	97.93
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.89
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.87
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.85
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.85
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.84
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.84
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.84
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.81
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.81
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.8
PRK00098	298	GTPase RsgA; Reviewed	97.8
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.79
PRK00300	205	gmk guanylate kinase; Provisional	97.77
PLN02318	656	phosphoribulokinase/uridine kinase	97.77
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.76
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.76
PRK05922	434	type III secretion system ATPase; Validated	97.75
PLN02796	347	D-glycerate 3-kinase	97.75
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.72
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.7
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.7
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.69
PRK03846	198	adenylylsulfate kinase; Provisional	97.67
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.65
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	97.61
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.61
PRK04863	1486	mukB cell division protein MukB; Provisional	97.6
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.58
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.55
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.54
TIGR00767	415	rho transcription termination factor Rho. Members	97.53
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.52
PRK11545	163	gntK gluconate kinase 1; Provisional	97.52
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.49
PRK06820	440	type III secretion system ATPase; Validated	97.46
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.44
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.44
PRK06936	439	type III secretion system ATPase; Provisional	97.44
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.43
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.42
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.41
PRK00064	361	recF recombination protein F; Reviewed	97.34
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.34
PLN02165	334	adenylate isopentenyltransferase	97.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.28
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.28
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	97.24
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.23
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.23
PLN03046	460	D-glycerate 3-kinase; Provisional	97.21
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.17
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.15
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.13
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.13
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.11
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	97.1
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.07
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.03
PRK00889	175	adenylylsulfate kinase; Provisional	96.98
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.94
PRK07429	327	phosphoribulokinase; Provisional	96.93
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.91
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	96.89
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.85
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.83
PRK05480	209	uridine/cytidine kinase; Provisional	96.82
smart00382	148	AAA ATPases associated with a variety of cellular	96.79
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	96.78
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	96.78
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	96.77
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.76
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	96.76
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.76
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.73
cd01128	249	rho_factor Transcription termination factor rho is	96.7
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.69

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.4e-72  Score=669.55  Aligned_cols=494  Identities=23%  Similarity=0.381  Sum_probs=380.2

Q ss_pred             CCCCceeecCCHHHHHHHHH--cCCCcceEEEEEecCC------CCeeEEEEEEccccc--cC--------CCC----CC
Q 009374            9 IPSSKVMSFRTAAEVDDWLY--SNPMRCPGALHFVDRN------ATTISYGIQTNSTPI--EM--------RGR----YE   66 (536)
Q Consensus         9 ~~~~~~~~f~s~~~~~~~~~--~~~~~~~~av~F~~~~------~~~~~Y~i~~n~~~~--~~--------~~~----~~   66 (536)
                      +..|++++++||++|++...  -+...++|||+|++..      +.+++|+||+|.+..  ++        .++    ..
T Consensus       520 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~  599 (2272)
T TIGR01257       520 LVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVE  599 (2272)
T ss_pred             eeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccc
Confidence            56789999999999999863  2445689999997652      368999999998732  11        011    12


Q ss_pred             CCccc--hhhHHHHHHHHHHHHHHhCCCCcceeeeeeccCCCchhHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009374           67 DPTFK--FQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIF---SAVARIGPTFFLAVAMFGFVFQISSLVTEK  141 (536)
Q Consensus        67 ~~~~~--~~~~lq~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~~---~~~~~~~~~f~~~~~~~~~~~~v~~iV~EK  141 (536)
                      +|.|+  .|+++|.+||+||++..++.. ....+..++||+|++...   ..+..++|+|+++++++++..+++.+|.||
T Consensus       600 ~~~Y~~~GFl~lQ~ai~~aii~~~~~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EK  678 (2272)
T TIGR01257       600 DFRYIWGGFAYLQDMVEQGITRSQMQAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEK  678 (2272)
T ss_pred             cccHHHhhHHHHHHHHHHHHHHhhcCCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34453  589999999999999877533 345688999999997643   345778899999999999999999999999


Q ss_pred             HHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009374          142 ELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIS  221 (536)
Q Consensus       142 e~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~~S~fF~  221 (536)
                      |.|+||.|+||||++++||+|||+..++..++++++++++.  ....+|..+++.++|+++++|++++|+|||++|+||+
T Consensus       679 E~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il--~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFs  756 (2272)
T TIGR01257       679 ELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFI--MHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFS  756 (2272)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998888776655433  2345788899999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHHHhcCCCCCccccccCCccCCCCC
Q 009374          222 KSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND  301 (536)
Q Consensus       222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~g~~w~~~~~~~~~~  301 (536)
                      |++.|+.++.+++++.+++..+.   +.+.+..+...++++|++||.+|+.|+..++..+  .++.|++|+++...+...
T Consensus       757 ka~~A~~~~~li~f~~~lp~~~~---~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e--~~~~G~~w~n~~~~~~~~  831 (2272)
T TIGR01257       757 KASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFE--EQGLGLQWSNIGNSPLEG  831 (2272)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH---hhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHh--hhCCCcccccccccccCC
Confidence            99999999888877765544321   1233334556788899999999999999998764  346789999987654332


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccccCCcCCCCCCccccCccccccCCCCCCCCCCCC
Q 009374          302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPD  381 (536)
Q Consensus       302 ~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (536)
                      +  .++++..+.||++|+++|++|+||+|+|+|++||++|||+|+++++||.++.+.......   .....+.. ....+
T Consensus       832 d--~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~---~~~~~~~~-~~~~~  905 (2272)
T TIGR01257       832 D--EFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREER---ALEKTEPL-TEEME  905 (2272)
T ss_pred             C--CccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccc---cccccccc-ccccc
Confidence            2  357777889999999999999999999999999999999999999999764211000000   00000000 00000


Q ss_pred             ChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchh
Q 009374          382 DEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKT  461 (536)
Q Consensus       382 ~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKS  461 (536)
                      +.+..+...  ....++++.+....++++||+|.|++++             +.||+|+||++++||+++|+||||||||
T Consensus       906 ~~~~~~~~~--~~~~E~~~~~~~~~L~I~nLsK~y~~~~-------------k~aL~~lsl~I~~Gei~aLLG~NGAGKS  970 (2272)
T TIGR01257       906 DPEHPEGIN--DSFFERELPGLVPGVCVKNLVKIFEPSG-------------RPAVDRLNITFYENQITAFLGHNGAGKT  970 (2272)
T ss_pred             ccccccccc--ccccccccCCCCceEEEEeEEEEecCCC-------------ceEEEeeEEEEcCCcEEEEECCCCChHH
Confidence            000000000  0000111222345899999999996321             2699999999999999999999999999


Q ss_pred             HHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          462 TTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       462 Tll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ||+++|+|+.+|++|+|+++|+++.  .+..++|+.+|||||++.+++++||+|||.++++++|.+.++.++
T Consensus       971 TLLkiLaGLl~PtsG~I~i~G~dI~--~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~ 1040 (2272)
T TIGR01257       971 TTLSILTGLLPPTSGTVLVGGKDIE--TNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL 1040 (2272)
T ss_pred             HHHHHHhcCCCCCceEEEECCEECc--chHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            9999999999999999999999984  356677889999999999999999999999999999987655443

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=9.3e-49  Score=466.49  Aligned_cols=408  Identities=23%  Similarity=0.364  Sum_probs=285.9

Q ss_pred             hhhHHH-HHHHHHHHHHHhCCC----CcceeeeeeccCCCchhHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 009374           72 FQIPLQ-LAAEREIARSLVGDP----NFSWVVGLKEFAHPPGEIFS------AVARIGPTFFLAVAMFGFVFQISSLVTE  140 (536)
Q Consensus        72 ~~~~lq-~ai~~ai~~~~~~~~----~~~~~~~~~~~p~p~~~~~~------~~~~~~~~f~~~~~~~~~~~~v~~iV~E  140 (536)
                      +.+|+- +.+++||++...++.    +..+++.++|+|.+..+...      .......+++++...+....++..+|.|
T Consensus      1625 Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~E 1704 (2272)
T TIGR01257      1625 HALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQE 1704 (2272)
T ss_pred             cHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehH
Confidence            345554 667899999875422    35778888888876433111      1111112222222222233445668999


Q ss_pred             HHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-CchHHHHHHHHHHHHHHHHHHHHHHHh
Q 009374          141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN-NSFAVLFLLFFLFELNMTGFAFMFSAF  219 (536)
Q Consensus       141 Ke~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~-~~~~~~~l~~~l~~~s~i~~~~~~S~f  219 (536)
                      |++|+||+|.++|++..+||+|+|+||++.|++++++++++..+++...|.. .+++.+++++++||+|.|+++|++|++
T Consensus      1705 R~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~Sfl 1784 (2272)
T TIGR01257      1705 RVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFL 1784 (2272)
T ss_pred             HhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998888888887666654 567788899999999999999999999


Q ss_pred             cCChhHHHHHHHHH-HHHHHHHHHHHhh-c-CCC---CcccchhhhhhheecChhHHHHHHHHHHHhcCCCCCccccccC
Q 009374          220 ISKSSSSTTIGFSV-FIVGFLTQLVTAF-G-FPY---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR  293 (536)
Q Consensus       220 F~~~~~a~~~~~~~-~~~~~~~~~~~~~-~-~~~---~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~g~~w~~  293 (536)
                      |+++.+|.....++ +++|++..++..+ . +..   ....+..+++++.++|++|++.|+..++.......... ....
T Consensus      1785 F~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~-~~~~ 1863 (2272)
T TIGR01257      1785 FDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYA-QFGE 1863 (2272)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHH-hhcc
Confidence            99999997654433 4444433322111 1 111   11124577888999999999999998875421100000 0000


Q ss_pred             CccCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccccCCcCCCCCCccccCccccccCCCC
Q 009374          294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVP  373 (536)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~  373 (536)
                      .....+...+   ..+..+++|++++++|+++.+++|.-.           +.   +-|....                 
T Consensus      1864 ~~~~~~~~~~---~~g~~ll~m~~~~iv~flLl~~ie~~~-----------~~---~~~~~~~----------------- 1909 (2272)
T TIGR01257      1864 EHSANPFQWD---LIGKNLVAMAVEGVVYFLLTLLIQHHF-----------FL---SRWIAEP----------------- 1909 (2272)
T ss_pred             cccCCccchh---hccHHHHHHHHHHHHHHHHHHHHHhhh-----------hh---hhhcccc-----------------
Confidence            0000000000   122345678889999999999998521           00   0011110                 


Q ss_pred             CCCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEe
Q 009374          374 PMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLL  453 (536)
Q Consensus       374 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~Ll  453 (536)
                      ..+...+||+||.+|+.++....     .....++++||+|.|+++             ++.||+|+||+|++|||+||+
T Consensus      1910 ~~~~~~~eD~DV~~Er~rV~~~~-----~~~~~L~v~nLsK~Y~~~-------------~~~aL~~ISf~I~~GEi~gLL 1971 (2272)
T TIGR01257      1910 AKEPIFDEDDDVAEERQRIISGG-----NKTDILRLNELTKVYSGT-------------SSPAVDRLCVGVRPGECFGLL 1971 (2272)
T ss_pred             CcCcCCCchhHHHHHHHHHhccC-----CCCceEEEEEEEEEECCC-------------CceEEEeeEEEEcCCcEEEEE
Confidence            00112368899999998775421     124579999999999642             126999999999999999999


Q ss_pred             CCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          454 GPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       454 G~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ||||||||||+|||+|+++|++|+|+++|+++.  .+..++|+.+|||||++.+++++|++|||.++++++|++++++++
T Consensus      1972 G~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~--~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~ 2049 (2272)
T TIGR01257      1972 GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL--TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEK 2049 (2272)
T ss_pred             CCCCCcHHHHHHHHhCCCCCCccEEEECCEECc--chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            999999999999999999999999999999984  345567889999999999999999999999999999988765544


Q ss_pred             h
Q 009374          534 V  534 (536)
Q Consensus       534 ~  534 (536)
                      .
T Consensus      2050 ~ 2050 (2272)
T TIGR01257      2050 V 2050 (2272)
T ss_pred             H
Confidence            3

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=1e-45  Score=423.19  Aligned_cols=416  Identities=27%  Similarity=0.392  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHHHhCCCCcceeeeeeccCCCchhH-HHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCc
Q 009374           77 QLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEI-FSA-VARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGL  154 (536)
Q Consensus        77 q~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~-~~~-~~~~~~~f~~~~~~~~~~~~v~~iV~EKe~~~k~~m~~mGl  154 (536)
                      ....++++.+...+..   +.+.+.++|.+.... .+. ....++.+++...++.+...+...|.||+.|+|+.|+++|+
T Consensus       260 ~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~  336 (885)
T KOG0059|consen  260 LGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGL  336 (885)
T ss_pred             cchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCC
Confidence            4455677777654322   555666666655432 223 34455566655566666677788999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009374          155 YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVF  234 (536)
Q Consensus       155 ~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~~S~fF~~~~~a~~~~~~~~  234 (536)
                      ++++||+++++||++.+++..+++.+++.+++  ++..++..++++++++|+++.++++|++|++|+++.++.+...+..
T Consensus       337 ~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~  414 (885)
T KOG0059|consen  337 SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYN  414 (885)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHH
Confidence            99999999999999999999988888877777  5666788899999999999999999999999999999876655543


Q ss_pred             HHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHHHhcC---CCCCccccccCCccCCCCCccccchHHHH
Q 009374          235 IVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATE---TPQDIGISWSRRAECAPNDTECVITINDI  311 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~---~~~~~g~~w~~~~~~~~~~~~~~~~~~~~  311 (536)
                      +++.+...+....+.+.............+.|++.+......+.....   .....+..|+....+..     .....  
T Consensus       415 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--  487 (885)
T KOG0059|consen  415 LISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDES-----FYTLL--  487 (885)
T ss_pred             HHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhccccc-----ccchh--
Confidence            333222211111122222222223333334555544433333322111   11234556665443210     00000  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccccCCcCCCCCCccccCccccccCCCCCCCCCCCCChhhHHHHHH
Q 009374          312 YIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENM  391 (536)
Q Consensus       312 ~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  391 (536)
                      ..|        .....+.+.+.+...|...+.++.+.+..+.++.....+        ...+..+....|+.|+.+|+++
T Consensus       488 ~~~--------~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~e~~~v~~e~~~  551 (885)
T KOG0059|consen  488 LEW--------LLPLIGRRYLALVTEGVKDDLFFLLIFVPFKRRMRALTQ--------NMLKGFEPVEVEKLDVARERNR  551 (885)
T ss_pred             HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--------cccCCCcCcchhhHHHHHHHHh
Confidence            001        000000000001111111112222222222211100000        0011112334567778877654


Q ss_pred             HHhhhhcCCCCCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          392 VKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       392 ~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.......  ....++.+++|+|.|+...              .|++++|+.|++|||+||+|+|||||||+++|++|+.
T Consensus       552 v~~~~~~~--~~~~~~~~~~L~k~y~~~~--------------~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~  615 (885)
T KOG0059|consen  552 VETLLFRS--SYSSALVLNNLSKVYGGKD--------------GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET  615 (885)
T ss_pred             hhhhhhcc--cccceEEEcceeeeecchh--------------hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc
Confidence            44332211  1135799999999997531              1999999999999999999999999999999999999


Q ss_pred             ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhhC
Q 009374          472 PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA  536 (536)
Q Consensus       472 ~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v~  536 (536)
                      +||+|+++++|+++....+.+++++.+|||||+|+||++||+||||++|+++||++++++++.+|
T Consensus       616 ~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~  680 (885)
T KOG0059|consen  616 KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE  680 (885)
T ss_pred             cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH
Confidence            99999999999999765567779999999999999999999999999999999999988887764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.9e-27  Score=215.50  Aligned_cols=114  Identities=25%  Similarity=0.394  Sum_probs=104.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ++++.+|+|+|++.              +.|++|+||++++|||+||||+|||||||+|+||++++.|++|.|+++|.|.
T Consensus         1 Ml~v~~l~K~y~~~--------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~   66 (245)
T COG4555           1 MLEVTDLTKSYGSK--------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT   66 (245)
T ss_pred             CeeeeehhhhccCH--------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccc
Confidence            36889999999753              3599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                        ..+...+|++||+.+-...++..||++|||.+|+++.|+.+.+++++.
T Consensus        67 --~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari  114 (245)
T COG4555          67 --VRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARI  114 (245)
T ss_pred             --ccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHH
Confidence              456778999999999999999999999999999999999988877654

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=1.8e-26  Score=218.00  Aligned_cols=110  Identities=32%  Similarity=0.556  Sum_probs=102.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ++++++++|+|++.               .||+|+||+|++||++||||+||||||||+|||.|+++||+|+|.++|.++
T Consensus         2 ~L~ie~vtK~Fg~k---------------~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~   66 (300)
T COG4152           2 ALEIEGVTKSFGDK---------------KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL   66 (300)
T ss_pred             ceEEecchhccCce---------------eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch
Confidence            57899999999763               699999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      +     ...+.+|||.|.+..|++.|||.|.|.++|++||++.+++++++
T Consensus        67 ~-----~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~  111 (300)
T COG4152          67 S-----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL  111 (300)
T ss_pred             h-----hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH
Confidence            4     25677899999999999999999999999999999999988764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=8.9e-26  Score=210.54  Aligned_cols=115  Identities=23%  Similarity=0.465  Sum_probs=104.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++|++|+|++.               ++|+|+|++|.+||+++++||+||||||+||||.|+.+|++|+|.++|.++
T Consensus         2 mi~i~~l~K~fg~~---------------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~   66 (240)
T COG1126           2 MIEIKNLSKSFGDK---------------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV   66 (240)
T ss_pred             eEEEEeeeEEeCCe---------------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence            58999999999753               699999999999999999999999999999999999999999999999887


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH-HHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF-ANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~-~~lkg~~~~~~~~~v  535 (536)
                      ....+..+.|+++|+|+|+..|||++||.||+.+- -..+|++++++++.+
T Consensus        67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A  117 (240)
T COG1126          67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA  117 (240)
T ss_pred             cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHH
Confidence            53347788999999999999999999999999984 578999998887754

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.6e-26  Score=228.88  Aligned_cols=113  Identities=22%  Similarity=0.434  Sum_probs=104.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .||+|+||+|++||+++|+||||||||||||||+|+.+||+|+|.|+|.++
T Consensus         3 ~i~l~~v~K~yg~~---------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v   67 (338)
T COG3839           3 ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV   67 (338)
T ss_pred             EEEEeeeEEEcCCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            58999999999752               299999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhhC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA  536 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v~  536 (536)
                      ++   ....+|+||+|||+.+|||+|||+||+.|..+++|+++++++++|+
T Consensus        68 t~---l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~  115 (338)
T COG3839          68 TD---LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK  115 (338)
T ss_pred             CC---CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHH
Confidence            53   4455789999999999999999999999999999999999887763

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=4.5e-26  Score=216.66  Aligned_cols=114  Identities=24%  Similarity=0.416  Sum_probs=106.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +++++|++|.|++.               .||+|+||+|++||+++|+||+||||||||+||.++++||+|+|+|+|.++
T Consensus         1 MI~~~nvsk~y~~~---------------~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i   65 (309)
T COG1125           1 MIEFENVSKRYGNK---------------KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI   65 (309)
T ss_pred             CceeeeeehhcCCc---------------eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec
Confidence            37899999999753               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      .+ .+..+.|++|||+-|...|||+|||.||+.+--.++|++++++++++
T Consensus        66 ~~-~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~  114 (309)
T COG1125          66 SD-LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA  114 (309)
T ss_pred             cc-CCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHH
Confidence            74 45678899999999999999999999999999999999999888765

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=1.9e-25  Score=227.15  Aligned_cols=114  Identities=26%  Similarity=0.429  Sum_probs=101.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++.               .||+|+||+|++||+++|||||||||||+||||+|+..|++|+|.++|+
T Consensus         3 ~~~l~i~~v~k~yg~~---------------~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~   67 (352)
T COG3842           3 KPALEIRNVSKSFGDF---------------TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE   67 (352)
T ss_pred             CceEEEEeeeeecCCe---------------eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence            3479999999999742               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC-ChHhHhhhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL-PLDSIKSVC  535 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~-~~~~~~~~v  535 (536)
                      ++.   +...-+|.+|+++|+.+|||+|||+||+.|..++++. +++++++.|
T Consensus        68 ~i~---~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv  117 (352)
T COG3842          68 DIT---DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV  117 (352)
T ss_pred             ECC---CCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHH
Confidence            995   3455678999999999999999999999999996664 445566654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=5e-25  Score=222.91  Aligned_cols=107  Identities=34%  Similarity=0.632  Sum_probs=98.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.              +.||+|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|.++
T Consensus         4 ~i~~~~l~k~~~~~--------------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~   69 (293)
T COG1131           4 VIEVRNLTKKYGGD--------------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDV   69 (293)
T ss_pred             eeeecceEEEeCCC--------------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeC
Confidence            57889999999731              1699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      .  .+..++++++||+||++.+++.|||+|+|.++++++|.+.
T Consensus        70 ~--~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~  110 (293)
T COG1131          70 V--KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK  110 (293)
T ss_pred             c--cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh
Confidence            4  3366789999999999999999999999999999999873

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=5.5e-25  Score=215.20  Aligned_cols=120  Identities=23%  Similarity=0.373  Sum_probs=108.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +|++++++|.|...          +.+.+.||+|+||+|++|||+|++|++|||||||+||+.++.+||+|+|.++|.++
T Consensus         1 mI~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di   70 (339)
T COG1135           1 MIELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL   70 (339)
T ss_pred             CeEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEec
Confidence            47899999999763          12345799999999999999999999999999999999999999999999999988


Q ss_pred             CC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ..  ..+.++.|++||+++||..|+...||.||+.|...+.|+|+++++++|
T Consensus        71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV  122 (339)
T COG1135          71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV  122 (339)
T ss_pred             ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHH
Confidence            63  345678899999999999999999999999999999999999988765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=3.4e-24  Score=202.96  Aligned_cols=117  Identities=24%  Similarity=0.423  Sum_probs=104.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.|++++|+|+|+++               .+++|+||+|++||+++++|++|+||||++|.|.|+++|++|+|.++|.
T Consensus         6 ~~~I~vr~v~~~fG~~---------------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~   70 (263)
T COG1127           6 EPLIEVRGVTKSFGDR---------------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE   70 (263)
T ss_pred             cceEEEeeeeeecCCE---------------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence            4679999999999764               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCChHhHhhhh
Q 009374          484 SIRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPLDSIKSVC  535 (536)
Q Consensus       484 ~i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~~~~~~~v  535 (536)
                      ++....  +..++|+++|+++|+.+||++|||+||+.|+. ...++|++.+++.|
T Consensus        71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv  125 (263)
T COG1127          71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV  125 (263)
T ss_pred             chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH
Confidence            986432  34568999999999999999999999999965 45578888887764

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=4.9e-25  Score=202.61  Aligned_cols=107  Identities=23%  Similarity=0.373  Sum_probs=96.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+.++||.|+|+++               ++|+|+||+|++||++||||||||||||++.|++|+.+|++|+|.++|.||
T Consensus         4 ~L~a~~l~K~y~kr---------------~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~di   68 (243)
T COG1137           4 TLVAENLAKSYKKR---------------KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI   68 (243)
T ss_pred             EEEehhhhHhhCCe---------------eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccc
Confidence            57899999999653               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      +...-...+|..+||.||+..+|..|||+||+.....++...
T Consensus        69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d  110 (243)
T COG1137          69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD  110 (243)
T ss_pred             ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence            753323567889999999999999999999999988877644

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.90  E-value=1.2e-23  Score=214.67  Aligned_cols=110  Identities=31%  Similarity=0.520  Sum_probs=99.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||+|.|++.               .||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus         6 ~~i~i~~l~k~~~~~---------------~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~   70 (306)
T PRK13537          6 APIDFRNVEKRYGDK---------------LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP   70 (306)
T ss_pred             ceEEEEeEEEEECCe---------------EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe
Confidence            479999999999642               69999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      +..  ...+.++.+|||||++.+++++|++|||.++++++|.+.++.
T Consensus        71 ~~~--~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  115 (306)
T PRK13537         71 VPS--RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAA  115 (306)
T ss_pred             ccc--chHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence            843  334578899999999999999999999999999888775543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.90  E-value=4e-24  Score=195.25  Aligned_cols=116  Identities=26%  Similarity=0.408  Sum_probs=106.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +|++++++|.|++.+              .||+|+||+|++||..-|.||+||||||++|+|.+..+||+|+|.++|+|+
T Consensus         1 mI~f~~V~k~Y~~g~--------------~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl   66 (223)
T COG2884           1 MIRFENVSKAYPGGR--------------EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL   66 (223)
T ss_pred             CeeehhhhhhcCCCc--------------hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeec
Confidence            378999999998752              699999999999999999999999999999999999999999999999998


Q ss_pred             CC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ..  ..+..-.|++||+++|+.-|.+++||.||+.+..++.|.+++++++.|
T Consensus        67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV  118 (223)
T COG2884          67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV  118 (223)
T ss_pred             ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHH
Confidence            63  345667899999999999999999999999999999999999988776

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=3.1e-23  Score=195.99  Aligned_cols=104  Identities=24%  Similarity=0.394  Sum_probs=95.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+..|+..               +||+|+||++++|||++|||+||||||||++.|+|+.+|++|+|.++|+|+
T Consensus         3 mL~v~~l~~~YG~~---------------~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di   67 (237)
T COG0410           3 MLEVENLSAGYGKI---------------QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI   67 (237)
T ss_pred             ceeEEeEeecccce---------------eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec
Confidence            58899999999753               799999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      +.....+.+|..|+||||...+|++|||+|||.+.+..+
T Consensus        68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~  106 (237)
T COG0410          68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR  106 (237)
T ss_pred             CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcc
Confidence            865566778999999999999999999999999875544

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=1e-20  Score=226.31  Aligned_cols=104  Identities=25%  Similarity=0.334  Sum_probs=91.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEc
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIY  481 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~  481 (536)
                      ..++++||++.|+.++           +.+.+|+|+|+++++||++||+||||||||||+++|+|+.+   |++|+|.++
T Consensus       758 ~~l~~~nl~~~~~~~~-----------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~  826 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKK-----------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN  826 (1394)
T ss_pred             ceEEEEeeEEEecCCC-----------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEEC
Confidence            3579999999996321           12369999999999999999999999999999999999997   789999999


Q ss_pred             CEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       482 g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      |+++.     .+.|+.+|||||++.+++.+||+|+|.+.++++
T Consensus       827 G~~~~-----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~  864 (1394)
T TIGR00956       827 GRPLD-----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR  864 (1394)
T ss_pred             CEECC-----hhhhcceeeecccccCCCCCCHHHHHHHHHHhC
Confidence            99873     246788999999999999999999999988876

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.89  E-value=8.7e-23  Score=210.67  Aligned_cols=110  Identities=30%  Similarity=0.517  Sum_probs=98.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++||+|.|++.               .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus        39 ~~~i~i~nl~k~y~~~---------------~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~  103 (340)
T PRK13536         39 TVAIDLAGVSKSYGDK---------------AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV  103 (340)
T ss_pred             ceeEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence            3479999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ++..  .....++.+|||||++.+++.+|++||+.+++.++|.+.++
T Consensus       104 ~~~~--~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  148 (340)
T PRK13536        104 PVPA--RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE  148 (340)
T ss_pred             ECCc--chHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence            9843  33467889999999999999999999999998888766443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.89  E-value=1e-22  Score=195.08  Aligned_cols=112  Identities=24%  Similarity=0.377  Sum_probs=97.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +++++++|.|+...           ..+.|++++||+|++||+++|+||+||||||||++|.|+.+||+|++.++|.|+.
T Consensus         2 i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~   70 (226)
T COG1136           2 IELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLT   70 (226)
T ss_pred             cEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcC
Confidence            56899999997542           1257999999999999999999999999999999999999999999999999986


Q ss_pred             Cccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      ...+  ..+. |++|||++|+..|.++|||+||+.+...+.|.+..
T Consensus        71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~  116 (226)
T COG1136          71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG  116 (226)
T ss_pred             cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh
Confidence            4332  3344 46799999999999999999999999999988764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.88  E-value=2.1e-22  Score=205.17  Aligned_cols=108  Identities=28%  Similarity=0.475  Sum_probs=96.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|+|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~   66 (301)
T TIGR03522         2 SIRVSSLTKLYGTQ---------------NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV   66 (301)
T ss_pred             EEEEEEEEEEECCE---------------EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            37899999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ..  ...++++.+|||||++.+++.+|++|||.++++++|.+.++
T Consensus        67 ~~--~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~  109 (301)
T TIGR03522        67 LQ--NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL  109 (301)
T ss_pred             cc--ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence            43  33467788999999999999999999999999988876443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=7.2e-23  Score=196.42  Aligned_cols=108  Identities=23%  Similarity=0.423  Sum_probs=97.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++++|.|++.               .|++|+||+|.+||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+
T Consensus         3 ~l~i~~v~~~f~~~---------------~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v   67 (248)
T COG1116           3 LLEIEGVSKSFGGV---------------EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV   67 (248)
T ss_pred             eEEEEeeEEEeCce---------------EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence            58899999999752               699999999999999999999999999999999999999999999999887


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      .      .....+||++|++.|+|-+||+||+.+...++|.++++.++.
T Consensus        68 ~------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~  110 (248)
T COG1116          68 T------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER  110 (248)
T ss_pred             C------CCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence            3      235679999999999999999999999999999777655443

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.7e-22  Score=205.99  Aligned_cols=113  Identities=26%  Similarity=0.368  Sum_probs=99.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus         4 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~   68 (351)
T PRK11432          4 KNFVVLKNITKRFGSN---------------TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE   68 (351)
T ss_pred             CcEEEEEeEEEEECCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCE
Confidence            3479999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++..   ....++++|||||+..+|+++||+||+.+..+.++.+++++++.
T Consensus        69 ~i~~---~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~  116 (351)
T PRK11432         69 DVTH---RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR  116 (351)
T ss_pred             ECCC---CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH
Confidence            9853   22346789999999999999999999999888888776655443

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=1.3e-22  Score=193.16  Aligned_cols=102  Identities=27%  Similarity=0.407  Sum_probs=93.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++|+|+|++-               +||+|+||+|++||++||+|||||||||++|+|+|.++||+|+|.++|+||
T Consensus         4 lL~v~~l~k~FGGl---------------~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i   68 (250)
T COG0411           4 LLEVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI   68 (250)
T ss_pred             eeeeccceeecCCE---------------EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence            57899999999763               799999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      ......+..|..|+--+|...+|++|||.||+..-..
T Consensus        69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~  105 (250)
T COG0411          69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAH  105 (250)
T ss_pred             CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhh
Confidence            7655556678889999999999999999999988644

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.87  E-value=2.3e-22  Score=207.78  Aligned_cols=103  Identities=30%  Similarity=0.456  Sum_probs=95.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..+++++++|.|++               ++|.+||||+|++|||.+|||.|||||||||++|.|+++|++|+|+++|+.
T Consensus         3 ~~l~~~~itK~f~~---------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~   67 (501)
T COG3845           3 PALEMRGITKRFPG---------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE   67 (501)
T ss_pred             ceEEEeccEEEcCC---------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEE
Confidence            47899999999974               379999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      +.-....+.++..||++.||..|+|.+||.||+.+...
T Consensus        68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e  105 (501)
T COG3845          68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLE  105 (501)
T ss_pred             eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCc
Confidence            87555667788899999999999999999999999764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.87  E-value=7.1e-22  Score=204.92  Aligned_cols=111  Identities=23%  Similarity=0.398  Sum_probs=97.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus         3 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~   67 (353)
T TIGR03265         3 PYLSIDNIRKRFGAF---------------TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD   67 (353)
T ss_pred             cEEEEEEEEEEeCCe---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEE
Confidence            368999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      +..   ....++.+|||||+..+|+++||+||+.+..+.++.++++.++
T Consensus        68 ~~~---~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~  113 (353)
T TIGR03265        68 ITR---LPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE  113 (353)
T ss_pred             CCC---CCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHH
Confidence            843   2234678999999999999999999999988877776655443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.87  E-value=8.7e-22  Score=203.06  Aligned_cols=116  Identities=22%  Similarity=0.390  Sum_probs=98.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++..           ..+.+|+|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 I~~~~lsk~y~~~~-----------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~   70 (343)
T TIGR02314         2 IKLSNITKVFHQGT-----------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLT   70 (343)
T ss_pred             EEEEEEEEEECCCC-----------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            78999999996421           1236999999999999999999999999999999999999999999999999985


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ...  +.+..|+++||+||+..+++.+||+||+.+.....|.+++++++
T Consensus        71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~  119 (343)
T TIGR02314        71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR  119 (343)
T ss_pred             cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH
Confidence            321  23456889999999999999999999999988777777655443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.87  E-value=9.6e-22  Score=200.54  Aligned_cols=109  Identities=31%  Similarity=0.494  Sum_probs=96.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus         3 ~~i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~   67 (303)
T TIGR01288         3 VAIDLVGVSKSYGDK---------------VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP   67 (303)
T ss_pred             cEEEEEeEEEEeCCe---------------EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence            468999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      +..  .....++.+||+||++.+++.+|++||+.+++...+.+.++
T Consensus        68 ~~~--~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  111 (303)
T TIGR01288        68 VPS--RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTRE  111 (303)
T ss_pred             Ccc--cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHH
Confidence            842  23456788999999999999999999999888777765443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.1e-22  Score=196.70  Aligned_cols=104  Identities=20%  Similarity=0.395  Sum_probs=90.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ++++++++|.|+..               .|++|+|++|+.||.++|+|||||||||||++|+|++.|++|+|.++|+-+
T Consensus         2 ~i~i~~~~~~~~~~---------------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l   66 (345)
T COG1118           2 SIRINNVKKRFGAF---------------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL   66 (345)
T ss_pred             ceeehhhhhhcccc---------------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEec
Confidence            47889999999653               699999999999999999999999999999999999999999999999933


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      .+.+....-.++||+++|+.+||++|||.||+.|..+.+
T Consensus        67 ~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~  105 (345)
T COG1118          67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR  105 (345)
T ss_pred             cchhccchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence            222233344578999999999999999999999998776

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=9.6e-22  Score=185.87  Aligned_cols=102  Identities=29%  Similarity=0.506  Sum_probs=93.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .+++++||+|.|+++              +.||+||||+|++||.++|+|++|||||||||+|.|+.+|++|+|.++|.+
T Consensus         2 ~~i~~~nl~k~yp~~--------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~   67 (258)
T COG3638           2 MMIEVKNLSKTYPGG--------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ   67 (258)
T ss_pred             ceEEEeeeeeecCCC--------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccc
Confidence            368999999999753              269999999999999999999999999999999999999999999999998


Q ss_pred             cCC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +..  ..+.+++|+++||++|+.+|.+++||.||+...
T Consensus        68 i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~g  105 (258)
T COG3638          68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG  105 (258)
T ss_pred             hhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhh
Confidence            863  345778899999999999999999999999774

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.1e-21  Score=203.66  Aligned_cols=111  Identities=24%  Similarity=0.494  Sum_probs=96.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.              +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~i~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i   68 (356)
T PRK11650          3 GLKLQAVRKSYDGK--------------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV   68 (356)
T ss_pred             EEEEEeEEEEeCCC--------------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence            48999999999422              1599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ..   ....++.+||+||+..+|+++||+||+.+..+.++.++++.++
T Consensus        69 ~~---~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~  113 (356)
T PRK11650         69 NE---LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE  113 (356)
T ss_pred             CC---CCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH
Confidence            43   2234578999999999999999999999988777777655443

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.85  E-value=2.8e-21  Score=188.04  Aligned_cols=107  Identities=34%  Similarity=0.533  Sum_probs=93.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   65 (220)
T cd03265           1 IEVENLVKKYGDF---------------EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV   65 (220)
T ss_pred             CEEEEEEEEECCE---------------EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecC
Confidence            4689999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .  ...+.++.+||+||++.+++.+|++||+.+..+.++.+.++
T Consensus        66 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  107 (220)
T cd03265          66 R--EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAE  107 (220)
T ss_pred             c--ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHH
Confidence            2  22456778999999999999999999999987777765443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.85  E-value=3.1e-21  Score=201.29  Aligned_cols=111  Identities=24%  Similarity=0.424  Sum_probs=97.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus        12 ~~~L~l~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~   76 (375)
T PRK09452         12 SPLVELRGISKSFDGK---------------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ   76 (375)
T ss_pred             CceEEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence            3468999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~  532 (536)
                      ++..   ....++.+||+||+..||+++||+||+.+..+.++.+.++++
T Consensus        77 ~i~~---~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~  122 (375)
T PRK09452         77 DITH---VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEIT  122 (375)
T ss_pred             ECCC---CCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHH
Confidence            9842   223457899999999999999999999998777777665543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.85  E-value=4e-21  Score=186.65  Aligned_cols=111  Identities=31%  Similarity=0.514  Sum_probs=95.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++..           +...+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   70 (218)
T cd03266           2 ITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV   70 (218)
T ss_pred             eEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc
Confidence            67899999996531           1125999999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .  .....++.+|||||++.+++.+|++||+.++...++.+.++
T Consensus        71 ~--~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~  112 (218)
T cd03266          71 K--EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE  112 (218)
T ss_pred             c--CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHH
Confidence            2  34456788999999999999999999999887777765444

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.4e-21  Score=201.32  Aligned_cols=113  Identities=28%  Similarity=0.469  Sum_probs=98.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus        17 ~~~l~l~~v~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~   81 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV   81 (377)
T ss_pred             CceEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence            3469999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++..   ....++.+||+||+..||+++||+||+.+..+.++.+.+++++.
T Consensus        82 ~i~~---~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~  129 (377)
T PRK11607         82 DLSH---VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR  129 (377)
T ss_pred             ECCC---CCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence            9842   23456789999999999999999999999877777776555443

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.85  E-value=4e-21  Score=186.40  Aligned_cols=110  Identities=24%  Similarity=0.374  Sum_probs=93.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++..             +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   68 (216)
T TIGR00960         2 IRFEQVSKAYPGGH-------------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT   68 (216)
T ss_pred             eEEEEEEEEecCCC-------------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence            68999999996421             15999999999999999999999999999999999999999999999999874


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      ...  +....++.+||+||++.+++.+|++||+.+....++.+.+
T Consensus        69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  113 (216)
T TIGR00960        69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPR  113 (216)
T ss_pred             hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHH
Confidence            211  1234677899999999999999999999987766665433

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.85  E-value=3.8e-21  Score=199.90  Aligned_cols=110  Identities=20%  Similarity=0.346  Sum_probs=96.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc--cEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG--GDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~--G~i~i~g~  483 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++  |+|.++|.
T Consensus         5 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~   69 (362)
T TIGR03258         5 GIRIDHLRVAYGAN---------------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR   69 (362)
T ss_pred             EEEEEEEEEEECCe---------------EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCE
Confidence            58999999999642               59999999999999999999999999999999999999999  99999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ++..   ....++.+||++|+..+|+++||+||+.+..+.++.+++++++
T Consensus        70 ~~~~---~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~  116 (362)
T TIGR03258        70 DLTH---APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE  116 (362)
T ss_pred             ECCC---CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH
Confidence            9842   2234678999999999999999999999988877777655444

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.85  E-value=5.2e-21  Score=188.09  Aligned_cols=109  Identities=25%  Similarity=0.501  Sum_probs=91.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   65 (235)
T cd03261           1 IELRGLTKSFGGR---------------TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS   65 (235)
T ss_pred             CeEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            3688999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             Cccc--HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374          487 SSVS--MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK-GLPLDS  530 (536)
Q Consensus       487 ~~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk-g~~~~~  530 (536)
                      ....  ....++.+||+||++.+++.+|++||+.+..... +.+.++
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~  112 (235)
T cd03261          66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEE  112 (235)
T ss_pred             ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHH
Confidence            3211  2456788999999999999999999998875543 344433

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.85  E-value=3.3e-21  Score=196.54  Aligned_cols=94  Identities=36%  Similarity=0.668  Sum_probs=85.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..  ....+++.+||+||++.+++.+|++
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR--EPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc--CHHHHHhhcEEecCCCCCCCCCcHH
Confidence            69999999999999999999999999999999999999999999999999842  3345678899999999999999999


Q ss_pred             HHHHHHHHhcCCChHh
Q 009374          515 EHLHLFANIKGLPLDS  530 (536)
Q Consensus       515 e~L~~~~~lkg~~~~~  530 (536)
                      ||+.++++++|.+.++
T Consensus        85 e~l~~~~~~~~~~~~~  100 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDE  100 (302)
T ss_pred             HHHHHHHHHcCCCHHH
Confidence            9999998888876544

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.85  E-value=5.7e-21  Score=185.83  Aligned_cols=108  Identities=46%  Similarity=0.747  Sum_probs=93.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.+             .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~-------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (220)
T cd03263           1 LQIRNLTKTYKKGT-------------KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR   67 (220)
T ss_pred             CEEEeeEEEeCCCC-------------ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            46889999996420             25999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      .  .....++.+||+||++.+++.+|++||+.+.....+.+.+
T Consensus        68 ~--~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~  108 (220)
T cd03263          68 T--DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS  108 (220)
T ss_pred             c--chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence            2  2345677899999999999999999999998877776543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.85  E-value=5.1e-21  Score=187.71  Aligned_cols=107  Identities=28%  Similarity=0.458  Sum_probs=90.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   65 (232)
T cd03218           1 LRAENLSKRYGKR---------------KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT   65 (232)
T ss_pred             CeEEEEEEEeCCE---------------EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            4688999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      .....+..++.+||+||++.+++.+|++||+.+....++.+.
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~  107 (232)
T cd03218          66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK  107 (232)
T ss_pred             cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCH
Confidence            321112235679999999999999999999998766665543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.84  E-value=2.4e-21  Score=189.24  Aligned_cols=100  Identities=28%  Similarity=0.415  Sum_probs=91.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+..|+++               .+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++
T Consensus         2 ~L~~~~ls~~y~~~---------------~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i   66 (258)
T COG1120           2 MLEVENLSFGYGGK---------------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI   66 (258)
T ss_pred             eeEEEEEEEEECCe---------------eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence            57899999999753               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .+ ...++..+.+||+||.....+.+||+|-+.+..
T Consensus        67 ~~-~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR  101 (258)
T COG1120          67 AS-LSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR  101 (258)
T ss_pred             hh-cCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence            64 345677788999999999999999999998853

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.84  E-value=6.7e-21  Score=197.66  Aligned_cols=100  Identities=22%  Similarity=0.432  Sum_probs=89.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++
T Consensus         2 ~L~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i   66 (353)
T PRK10851          2 SIEIANIKKSFGRT---------------QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV   66 (353)
T ss_pred             EEEEEEEEEEeCCe---------------EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            47899999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      ..   ....++.+|||||+..+|+++|++||+.+..+.
T Consensus        67 ~~---~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~  101 (353)
T PRK10851         67 SR---LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTV  101 (353)
T ss_pred             CC---CCHHHCCEEEEecCcccCCCCcHHHHHHhhhhh
Confidence            43   223457899999999999999999999987664

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=5.7e-21  Score=177.74  Aligned_cols=117  Identities=22%  Similarity=0.433  Sum_probs=105.1

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-----cEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-----GDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-----G~i  478 (536)
                      ...++++||++.|++.               +||+|+|++|+++++++|+||+||||||+||++..+....+     |+|
T Consensus         5 ~~~~~~~~l~~yYg~~---------------~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v   69 (253)
T COG1117           5 IPAIEVRDLNLYYGDK---------------HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEV   69 (253)
T ss_pred             cceeEecceeEEECch---------------hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEE
Confidence            3578999999999753               69999999999999999999999999999999999987765     999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhhC
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA  536 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v~  536 (536)
                      .++|++|.+ ..+..++|+++|+++|.+.-|| +|++||+.+..+++|+..+++++.||
T Consensus        70 ~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe  127 (253)
T COG1117          70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVE  127 (253)
T ss_pred             EECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHH
Confidence            999999964 2457789999999999999999 99999999999999998777777764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8.3e-21  Score=198.35  Aligned_cols=108  Identities=22%  Similarity=0.422  Sum_probs=94.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~i~~l~~~~~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i   67 (369)
T PRK11000          3 SVTLRNVTKAYGDV---------------VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM   67 (369)
T ss_pred             EEEEEEEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            48899999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ..   ....++.+||+||+..+++++||+||+.+..+.++.+.++.
T Consensus        68 ~~---~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~  110 (369)
T PRK11000         68 ND---VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI  110 (369)
T ss_pred             CC---CCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHH
Confidence            42   12235679999999999999999999999877777665443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.84  E-value=8.2e-21  Score=184.44  Aligned_cols=111  Identities=27%  Similarity=0.463  Sum_probs=91.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.+           ....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   69 (218)
T cd03255           1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS   69 (218)
T ss_pred             CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence            36889999996421           0125999999999999999999999999999999999999999999999999874


Q ss_pred             Cccc--HHH-hhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSVS--MTN-IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~~--~~~-~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      ....  ... .++.+||+||++.+++.+|++||+.+....++.+.
T Consensus        70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  114 (218)
T cd03255          70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPK  114 (218)
T ss_pred             hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCH
Confidence            2111  112 35679999999999999999999999776666543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1e-20  Score=195.88  Aligned_cols=114  Identities=24%  Similarity=0.442  Sum_probs=96.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++..           ..+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 i~i~~l~~~y~~~~-----------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~   70 (343)
T PRK11153          2 IELKNISKVFPQGG-----------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT   70 (343)
T ss_pred             EEEEeEEEEeCCCC-----------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            78999999997311           0126999999999999999999999999999999999999999999999999985


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ...  +....|+.+||+||+..+++++|++||+.+.....|.+.++.
T Consensus        71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~  117 (343)
T PRK11153         71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEI  117 (343)
T ss_pred             cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHH
Confidence            321  223457889999999999999999999999877777765443

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.84  E-value=9e-21  Score=182.86  Aligned_cols=107  Identities=26%  Similarity=0.460  Sum_probs=92.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (208)
T cd03268           1 LKTNDLTKTYGKK---------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ   65 (208)
T ss_pred             CEEEEEEEEECCe---------------EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc
Confidence            4688999999542               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      .   ..+.++.+|||||++.+++.+|++||+.++....+...+++
T Consensus        66 ~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~  107 (208)
T cd03268          66 K---NIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRI  107 (208)
T ss_pred             c---hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHH
Confidence            2   14557789999999999999999999999876655443333

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.84  E-value=8.2e-21  Score=183.41  Aligned_cols=103  Identities=31%  Similarity=0.516  Sum_probs=90.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (210)
T cd03269           1 LEVENVTKRFGRV---------------TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD   65 (210)
T ss_pred             CEEEEEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence            3688999999642               5999999999999999999999999999999999999999999999998873


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      .     ..++.+||+||+..+++.+|++||+.+....++.+..
T Consensus        66 ~-----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (210)
T cd03269          66 I-----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE  103 (210)
T ss_pred             H-----HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence            1     3567899999999999999999999988777666543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.84  E-value=1.2e-20  Score=186.30  Aligned_cols=107  Identities=28%  Similarity=0.478  Sum_probs=92.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++.              ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (242)
T cd03295           1 IEFENVTKRYGGG--------------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR   66 (242)
T ss_pred             CEEEEEEEEeCCc--------------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcC
Confidence            3678999999641              15999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      . .+.+..++.+||+||++.+++.+|++||+.+..++.+.+.
T Consensus        67 ~-~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  107 (242)
T cd03295          67 E-QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK  107 (242)
T ss_pred             c-CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence            2 2334567789999999999999999999998877666543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.84  E-value=8.5e-21  Score=183.72  Aligned_cols=104  Identities=27%  Similarity=0.517  Sum_probs=89.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   65 (213)
T cd03259           1 LELKGLSKTYGSV---------------RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT   65 (213)
T ss_pred             CeeeeeEEEeCCe---------------eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcC
Confidence            3678999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      .   ....++.+||+||++.+++++|++||+.+.....+.+.
T Consensus        66 ~---~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~  104 (213)
T cd03259          66 G---VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK  104 (213)
T ss_pred             c---CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence            2   12345689999999999999999999988765555443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.84  E-value=1.6e-20  Score=181.95  Aligned_cols=108  Identities=26%  Similarity=0.376  Sum_probs=92.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (214)
T TIGR02673         2 IEFHNVSKAYPGG--------------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN   67 (214)
T ss_pred             EEEEeeeEEeCCC--------------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            6899999999522              15999999999999999999999999999999999999999999999999885


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      ...  +....++.+||+||++.+++.+|++||+.+....++...
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~  111 (214)
T TIGR02673        68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE  111 (214)
T ss_pred             cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCH
Confidence            321  123467789999999999999999999998766666543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=2.5e-20  Score=183.00  Aligned_cols=114  Identities=19%  Similarity=0.340  Sum_probs=93.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++|+++.|++..           ....+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus         4 ~~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   72 (233)
T PRK11629          4 ILLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP   72 (233)
T ss_pred             ceEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence            3689999999996421           01259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccH--HHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          485 IRSSVSM--TNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       485 i~~~~~~--~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      +......  ... ++.+||+||+..+++.+|++||+.+...+.+.+.+
T Consensus        73 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  120 (233)
T PRK11629         73 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA  120 (233)
T ss_pred             cCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            8532111  123 36799999999999999999999987655555433

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=1.9e-20  Score=180.17  Aligned_cols=102  Identities=24%  Similarity=0.356  Sum_probs=90.9

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~   66 (204)
T PRK13538          2 LEARNLACERDER---------------ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR   66 (204)
T ss_pred             eEEEEEEEEECCE---------------EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence            6889999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .  .....++.+||++|++.+++.+|++||+.+....++
T Consensus        67 ~--~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~  103 (204)
T PRK13538         67 R--QRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG  103 (204)
T ss_pred             c--chHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC
Confidence            2  224567789999999999999999999999876654

>PRK10908 cell division protein FtsE; Provisional

Probab=99.83  E-value=2.1e-20  Score=182.14  Aligned_cols=110  Identities=21%  Similarity=0.311  Sum_probs=93.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.              ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   67 (222)
T PRK10908          2 IRFEHVSKAYLGG--------------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT   67 (222)
T ss_pred             EEEEeeEEEecCC--------------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            6889999999422              15999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ...  +....++.+||+||++.+++.+|++||+.+....++.+.++
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  113 (222)
T PRK10908         68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDD  113 (222)
T ss_pred             cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHH
Confidence            311  22345778999999999999999999999877666665443

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.83  E-value=1.3e-20  Score=182.42  Aligned_cols=106  Identities=25%  Similarity=0.435  Sum_probs=91.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~   65 (213)
T cd03301           1 VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT   65 (213)
T ss_pred             CEEEeeEEEECCe---------------eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            3688999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ..   ...++.+||+||++.+++.+|++||+.+....++...++
T Consensus        66 ~~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (213)
T cd03301          66 DL---PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE  106 (213)
T ss_pred             cC---CcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence            21   122467999999999999999999999877666655443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.83  E-value=2.1e-20  Score=180.99  Aligned_cols=109  Identities=23%  Similarity=0.373  Sum_probs=92.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.              +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   66 (214)
T cd03292           1 IEFINVTKTYPNG--------------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS   66 (214)
T ss_pred             CEEEEEEEEeCCC--------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence            3678999999642              15999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      ...  +....++.++|+||++.+++.+|++||+.+....++.+.+
T Consensus        67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~  111 (214)
T cd03292          67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR  111 (214)
T ss_pred             cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHH
Confidence            321  1234677899999999999999999999988766665443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.83  E-value=1.8e-20  Score=182.53  Aligned_cols=104  Identities=25%  Similarity=0.400  Sum_probs=89.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (222)
T cd03224           1 LEVENLNAGYGKS---------------QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT   65 (222)
T ss_pred             CEEeeEEeecCCe---------------eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence            4688999999642               5999999999999999999999999999999999999999999999999875


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .....+..++.+||+||++.+++.+|++||+.+.....+
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~  104 (222)
T cd03224          66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR  104 (222)
T ss_pred             CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence            322222235679999999999999999999998765543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.83  E-value=1.5e-20  Score=181.76  Aligned_cols=106  Identities=30%  Similarity=0.524  Sum_probs=92.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++.               .+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~~~~~~~~~---------------~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   64 (211)
T cd03264           1 LQLENLTKRYGKK---------------RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL   64 (211)
T ss_pred             CEEEEEEEEECCE---------------EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence            4688999999542               5999999999999 99999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .. . ...++.+||+||++.+++.+|++|++.+....++.+.++
T Consensus        65 ~~-~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~  106 (211)
T cd03264          65 KQ-P-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE  106 (211)
T ss_pred             cc-h-HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence            32 2 456788999999999999999999999887776665433

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.83  E-value=2.2e-20  Score=183.37  Aligned_cols=111  Identities=26%  Similarity=0.459  Sum_probs=92.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|+++.           +...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   70 (233)
T cd03258           2 IELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT   70 (233)
T ss_pred             eEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            68899999996421           0125999999999999999999999999999999999999999999999999884


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      ...  +....++.+||+||++.+++.+|++||+.+....++.+.
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~  114 (233)
T cd03258          71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK  114 (233)
T ss_pred             cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCH
Confidence            321  122346789999999999999999999988766666543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.83  E-value=2e-20  Score=182.13  Aligned_cols=106  Identities=23%  Similarity=0.425  Sum_probs=90.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++..           ..+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   69 (220)
T cd03293           1 LEVRNVSKTYGGGG-----------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT   69 (220)
T ss_pred             CeEEEEEEEcCCCC-----------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            36889999996521           0126999999999999999999999999999999999999999999999999873


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                            ..++.+||+||++.+++.+|++||+.+....++.+.+
T Consensus        70 ------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  106 (220)
T cd03293          70 ------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA  106 (220)
T ss_pred             ------cccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHH
Confidence                  1356799999999999999999999987766665543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=184.21  Aligned_cols=104  Identities=28%  Similarity=0.454  Sum_probs=90.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (241)
T PRK10895          3 TLTAKNLAKAYKGR---------------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI   67 (241)
T ss_pred             eEEEeCcEEEeCCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            58899999999642               599999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      ......+..++.+||+||++.+++.+|++||+.+..++.
T Consensus        68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~  106 (241)
T PRK10895         68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR  106 (241)
T ss_pred             CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc
Confidence            532222335678999999999999999999998876544

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.83  E-value=2.7e-20  Score=183.16  Aligned_cols=106  Identities=27%  Similarity=0.398  Sum_probs=91.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++++||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~   66 (236)
T TIGR03864         2 LEVAGLSFAYGAR---------------RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR   66 (236)
T ss_pred             EEEEeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence            6789999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      .. . ...++.+||+||++.+++.+|++||+.+.+..++.+.+
T Consensus        67 ~~-~-~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~  107 (236)
T TIGR03864        67 RA-P-RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA  107 (236)
T ss_pred             cC-C-hhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence            31 1 23346799999999998999999999988776665443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.83  E-value=1.8e-20  Score=180.46  Aligned_cols=106  Identities=21%  Similarity=0.290  Sum_probs=89.1

Q ss_pred             EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~  488 (536)
                      ++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus         1 i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~   65 (206)
T TIGR03608         1 LKNISKKFGDK---------------IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPL   65 (206)
T ss_pred             CcceEEEECCE---------------EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcccc
Confidence            46888999642               599999999999999999999999999999999999999999999999986321


Q ss_pred             cc---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          489 VS---MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       489 ~~---~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      ..   ....++.+||++|++.+++.+|++||+.+.....+.+.+
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~  109 (206)
T TIGR03608        66 NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKK  109 (206)
T ss_pred             chhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHH
Confidence            11   223567899999999999999999999987665555433

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.83  E-value=2.6e-20  Score=183.14  Aligned_cols=103  Identities=29%  Similarity=0.424  Sum_probs=88.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (236)
T cd03219           1 LEVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT   65 (236)
T ss_pred             CeeeeeEEEECCE---------------EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence            3578999999642               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      .....+..++.+||+||++.+++.+|++||+.+.....
T Consensus        66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~  103 (236)
T cd03219          66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR  103 (236)
T ss_pred             CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc
Confidence            32211223567999999999999999999998876544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.83  E-value=3.6e-20  Score=181.48  Aligned_cols=105  Identities=26%  Similarity=0.396  Sum_probs=89.9

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (230)
T TIGR03410         1 LEVSNLNVYYGQS---------------HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT   65 (230)
T ss_pred             CEEEeEEEEeCCe---------------EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            4688999999642               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .....+..++.+||+||++.+++.+|++||+.+.....+.
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~  105 (230)
T TIGR03410        66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR  105 (230)
T ss_pred             CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc
Confidence            3222223467899999999999999999999887655443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.83  E-value=3.2e-20  Score=177.72  Aligned_cols=102  Identities=25%  Similarity=0.350  Sum_probs=89.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (198)
T TIGR01189         1 LAARNLACSRGER---------------MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA   65 (198)
T ss_pred             CEEEEEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence            4678999999642               5999999999999999999999999999999999999999999999999875


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ..  ....++.+||+||++.+++.+|++|++.++...++
T Consensus        66 ~~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~  102 (198)
T TIGR01189        66 EQ--RDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG  102 (198)
T ss_pred             cc--hHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC
Confidence            32  23456789999999999999999999998876654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.83  E-value=3.6e-20  Score=186.71  Aligned_cols=113  Identities=15%  Similarity=0.300  Sum_probs=95.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||++.|++..             +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|++
T Consensus         4 ~~l~~~~l~~~~~~~~-------------~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~   70 (279)
T PRK13635          4 EIIRVEHISFRYPDAA-------------TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV   70 (279)
T ss_pred             ceEEEEEEEEEeCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            3689999999996421             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      +.. ....+.++.+||+||+. .++..+|++||+.+.....+.+.++.
T Consensus        71 i~~-~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~  117 (279)
T PRK13635         71 LSE-ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM  117 (279)
T ss_pred             CCc-CcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHH
Confidence            853 23345677899999997 46778899999998776666665443

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.1e-20  Score=196.99  Aligned_cols=106  Identities=29%  Similarity=0.430  Sum_probs=94.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.++++|++|+|++-               +||+|+||++++|||++|+|.||||||||+|+|+|.++|++|+|.++|+
T Consensus         6 ~~ll~~~~i~K~FggV---------------~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~   70 (500)
T COG1129           6 PPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK   70 (500)
T ss_pred             cceeeeecceEEcCCc---------------eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE
Confidence            3468999999999763               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      .+......+.....|+.++|+..|.|+|||.||+.+....+
T Consensus        71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~  111 (500)
T COG1129          71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPT  111 (500)
T ss_pred             EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccc
Confidence            98643444555678999999999999999999998865543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.83  E-value=3.7e-20  Score=179.18  Aligned_cols=107  Identities=24%  Similarity=0.509  Sum_probs=91.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (213)
T cd03262           1 IEIKNLHKSFGDF---------------HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT   65 (213)
T ss_pred             CEEEEEEEEECCe---------------EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            3678999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             C-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH-hcCCCh
Q 009374          487 S-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN-IKGLPL  528 (536)
Q Consensus       487 ~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~-lkg~~~  528 (536)
                      . ..+....++.+||+||++.+++.+|++||+.+... .++.+.
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~  109 (213)
T cd03262          66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSK  109 (213)
T ss_pred             ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCH
Confidence            2 12334567889999999999999999999988643 445443

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PLN03140 ABC transporter G family member; Provisional

Probab=99.83  E-value=6.4e-18  Score=201.96  Aligned_cols=114  Identities=21%  Similarity=0.257  Sum_probs=90.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcC
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG  482 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g  482 (536)
                      ..+.++||+...+.+....  ....+.+.+.+|+|+|+.+++||+++|+||||||||||+++|+|..+  +.+|+|.++|
T Consensus       866 ~~~~~~~v~y~v~~~~~~~--~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG  943 (1470)
T PLN03140        866 LAMSFDDVNYFVDMPAEMK--EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG  943 (1470)
T ss_pred             ceEEEEEEEEEEccCcccc--ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence            3589999998875321100  00011123469999999999999999999999999999999999976  3789999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      ++..    ....++.+|||+|+|.+++.+||+|+|.+.+.++
T Consensus       944 ~~~~----~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr  981 (1470)
T PLN03140        944 FPKK----QETFARISGYCEQNDIHSPQVTVRESLIYSAFLR  981 (1470)
T ss_pred             ccCC----hHHhhhheEEEccccccCCCCcHHHHHHHHHHhC
Confidence            8763    1345678999999999999999999999987765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.83  E-value=3.2e-20  Score=192.53  Aligned_cols=98  Identities=27%  Similarity=0.375  Sum_probs=86.7

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHh----hcceEEEcCCCCCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI----QKSIGVCPQFNILWDA  510 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~----~~~ig~~pQ~~~l~~~  510 (536)
                      .+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.. .+..+.    |+.+|||||++.++++
T Consensus         7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            69999999999999999999999999999999999999999999999999853 223333    6789999999999999


Q ss_pred             CCHHHHHHHHHHhcCCChHhHhh
Q 009374          511 LSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       511 lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      +||+||+.+...+.|.++++.++
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~  108 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKE  108 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999988888877655443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.82  E-value=3.3e-20  Score=182.83  Aligned_cols=102  Identities=23%  Similarity=0.391  Sum_probs=89.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (239)
T cd03296           2 SIEVRNVSKRFGDF---------------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA   66 (239)
T ss_pred             EEEEEeEEEEECCE---------------EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            47899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ...   ...++.+||+||++.+++.+|++||+.+.....+
T Consensus        67 ~~~---~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~  103 (239)
T cd03296          67 TDV---PVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKP  103 (239)
T ss_pred             CcC---CccccceEEEecCCcccCCCCHHHHHhhhhhhcc
Confidence            421   1235679999999999999999999988765443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=4.7e-20  Score=185.19  Aligned_cols=113  Identities=24%  Similarity=0.391  Sum_probs=94.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++..             +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus         5 ~~~l~~~nl~~~~~~~~-------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~   71 (271)
T PRK13632          5 SVMIKVENVSFSYPNSE-------------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI   71 (271)
T ss_pred             ceEEEEEeEEEEcCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence            45799999999996321             15999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ++.. .+...+++.+|||||++. .++.+|++||+.+.....+.+.++
T Consensus        72 ~i~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~  118 (271)
T PRK13632         72 TISK-ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKK  118 (271)
T ss_pred             ecCc-CCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHH
Confidence            9842 234466788999999974 677899999998876555555443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=5.3e-20  Score=193.11  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=98.6

Q ss_pred             eEEEeeeEEEcCCCCcCc------ccc---ccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          406 AVQIRGLVKTFPGTRKIG------CCC---KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~------~~~---~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      .|+++||+|.|+......      ...   ..+..+.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            589999999998742100      000   01222334589999999999999999999999999999999999999999


Q ss_pred             EEEEcCEecCCccc--HHH-hhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          477 DALIYGFSIRSSVS--MTN-IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       477 ~i~i~g~~i~~~~~--~~~-~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      +|+++|.++.....  ..+ .++.+||+||+..+++++|++||+.+...++|.+.++.
T Consensus        84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~  141 (400)
T PRK10070         84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER  141 (400)
T ss_pred             EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHH
Confidence            99999999853211  112 24579999999999999999999999887777765443

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.82  E-value=3.5e-20  Score=179.12  Aligned_cols=105  Identities=25%  Similarity=0.439  Sum_probs=88.2

Q ss_pred             EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~  488 (536)
                      ++|++|.|++..             +.+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.. 
T Consensus         2 ~~~l~~~~~~~~-------------~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-   67 (211)
T cd03225           2 LKNLSFSYPDGA-------------RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK-   67 (211)
T ss_pred             ceeEEEecCCCC-------------eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-
Confidence            678999996421             159999999999999999999999999999999999999999999999998852 


Q ss_pred             ccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCC
Q 009374          489 VSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .+....++.+||+||++. .++++|++||+.+.....+..
T Consensus        68 ~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~  107 (211)
T cd03225          68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP  107 (211)
T ss_pred             CCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence            234556788999999974 366799999998876655544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.82  E-value=3e-20  Score=181.64  Aligned_cols=104  Identities=22%  Similarity=0.386  Sum_probs=89.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc-----ccCccEEEEc
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALIY  481 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~-----~pt~G~i~i~  481 (536)
                      ++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.     +|++|+|.++
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~   65 (227)
T cd03260           1 IELRDLNVYYGDK---------------HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD   65 (227)
T ss_pred             CEEEEEEEEcCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEEC
Confidence            4688999999642               5999999999999999999999999999999999999     9999999999


Q ss_pred             CEecCCcc-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          482 GFSIRSSV-SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       482 g~~i~~~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      |.++.... +....++.+||+||++.++ .+|++||+.+.....+.
T Consensus        66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~  110 (227)
T cd03260          66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI  110 (227)
T ss_pred             CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC
Confidence            99874211 1345678899999999988 89999999887666554

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=5.6e-20  Score=184.87  Aligned_cols=111  Identities=23%  Similarity=0.326  Sum_probs=92.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.              +.+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (274)
T PRK13644          2 IRLENVSYSYPDG--------------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG   67 (274)
T ss_pred             EEEEEEEEEcCCC--------------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence            6789999999532              14999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          487 SSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ........++.+||+||++. .+..+|++||+.+.....+.+.++.
T Consensus        68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~  113 (274)
T PRK13644         68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEI  113 (274)
T ss_pred             ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHH
Confidence            32223456778999999975 3667899999988766666655443

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.82  E-value=6.2e-20  Score=176.99  Aligned_cols=107  Identities=25%  Similarity=0.325  Sum_probs=92.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (207)
T PRK13539          2 MLEGEDLACVRGGR---------------VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI   66 (207)
T ss_pred             EEEEEeEEEEECCe---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence            47899999999642               599999999999999999999999999999999999999999999999886


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ..   . ..++.+||++|++.+++.+|++||+.+.....+...+++
T Consensus        67 ~~---~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~  108 (207)
T PRK13539         67 DD---P-DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI  108 (207)
T ss_pred             cc---h-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence            31   1 267789999999999999999999988776655443333

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.82  E-value=6.7e-20  Score=181.60  Aligned_cols=104  Identities=23%  Similarity=0.420  Sum_probs=90.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i  480 (536)
                      +++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|+     +|+|.+
T Consensus         1 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~   65 (247)
T TIGR00972         1 AIEIENLNLFYGEK---------------EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF   65 (247)
T ss_pred             CEEEEEEEEEECCe---------------eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence            37899999999642               5999999999999999999999999999999999999998     999999


Q ss_pred             cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +|.++... .+....++.+||+||+..+++ +|++||+.+....++
T Consensus        66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~  110 (247)
T TIGR00972        66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG  110 (247)
T ss_pred             CCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC
Confidence            99988421 123456788999999999998 999999998766665

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=7.5e-20  Score=185.18  Aligned_cols=117  Identities=23%  Similarity=0.392  Sum_probs=94.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++|+|.|++...          ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~   71 (287)
T PRK13637          2 SIKIENLTHIYMEGTP----------FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI   71 (287)
T ss_pred             EEEEEEEEEECCCCCc----------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEEC
Confidence            4789999999964210          012599999999999999999999999999999999999999999999999998


Q ss_pred             CCcc-cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSV-SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~-~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      .... .....++.+||+||++  .++ .+||+||+.+.....|.+.++.++
T Consensus        72 ~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~  121 (287)
T PRK13637         72 TDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIEN  121 (287)
T ss_pred             CCcCccHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHH
Confidence            5321 2245678899999986  344 579999999877666777655443

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.82  E-value=7e-20  Score=180.65  Aligned_cols=107  Identities=22%  Similarity=0.474  Sum_probs=90.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (240)
T PRK09493          2 IEFKNVSKHFGPT---------------QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN   66 (240)
T ss_pred             EEEEeEEEEECCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            6789999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             Cc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH-hcCCCh
Q 009374          487 SS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN-IKGLPL  528 (536)
Q Consensus       487 ~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~-lkg~~~  528 (536)
                      .. .+....++.+||+||++.+++.+|++|++.+... ..+...
T Consensus        67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~  110 (240)
T PRK09493         67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASK  110 (240)
T ss_pred             cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCH
Confidence            21 1234567789999999999999999999987542 334443

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.82  E-value=7.2e-20  Score=175.84  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=91.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEcC
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG  482 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~g  482 (536)
                      .+.++|++|.|+..+           +.+.+++++||++++||+++|+|+||||||||+++|+|+.+   |++|+|.++|
T Consensus         3 ~~~~~~~~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g   71 (202)
T cd03233           3 TLSWRNISFTTGKGR-----------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG   71 (202)
T ss_pred             eEEEEccEEEeccCC-----------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECC
Confidence            478999999997641           23369999999999999999999999999999999999999   8999999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      .++..  .....++.+||+||++.+++.+|++||+.+..+.
T Consensus        72 ~~~~~--~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  110 (202)
T cd03233          72 IPYKE--FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC  110 (202)
T ss_pred             EECcc--chhhhcceEEEEecccccCCCCcHHHHHhhhhhh
Confidence            98842  1234677899999999999999999999987643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.82  E-value=4.9e-20  Score=181.33  Aligned_cols=121  Identities=30%  Similarity=0.403  Sum_probs=92.9

Q ss_pred             EEeeeEEEcCCCCcCcc------ccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374          408 QIRGLVKTFPGTRKIGC------CCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (536)
Q Consensus       408 ~~~~l~k~y~~~~~~~~------~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~  481 (536)
                      +++|++|.|....+.+.      ....++.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~   81 (236)
T cd03267           2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA   81 (236)
T ss_pred             ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence            56777777765321000      000122234579999999999999999999999999999999999999999999999


Q ss_pred             CEecCCcccHHHhhcceEEEc-CCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          482 GFSIRSSVSMTNIQKSIGVCP-QFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       482 g~~i~~~~~~~~~~~~ig~~p-Q~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      |.++..  .....++.+||+| |.+.+++.+|++|++.+...+++...++
T Consensus        82 g~~~~~--~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~  129 (236)
T cd03267          82 GLVPWK--RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPAR  129 (236)
T ss_pred             CEEccc--cchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHH
Confidence            988632  2235567899998 5678889999999999887777765443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=6.3e-20  Score=182.59  Aligned_cols=102  Identities=23%  Similarity=0.355  Sum_probs=89.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   66 (255)
T PRK11248          2 LQISHLYADYGGK---------------PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE   66 (255)
T ss_pred             EEEEEEEEEeCCe---------------eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            6899999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      .      .++.+||+||++.+++.+|++||+.+....++.+.+
T Consensus        67 ~------~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  103 (255)
T PRK11248         67 G------PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM  103 (255)
T ss_pred             C------CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHH
Confidence            2      124589999999999999999999887666666543

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.82  E-value=8.4e-20  Score=180.24  Aligned_cols=102  Identities=28%  Similarity=0.385  Sum_probs=88.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   66 (242)
T TIGR03411         2 ILYLEGLSVSFDGF---------------KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL   66 (242)
T ss_pred             eEEEEeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence            47899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      ......+..++.+||+||++.+++.+|++||+.+...
T Consensus        67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~  103 (242)
T TIGR03411        67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP  103 (242)
T ss_pred             CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhh
Confidence            4322122235679999999999999999999988643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=7.4e-20  Score=184.48  Aligned_cols=114  Identities=18%  Similarity=0.359  Sum_probs=95.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++..            ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (279)
T PRK13650          4 IIEVKNLTFKYKEDQ------------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL   71 (279)
T ss_pred             eEEEEeEEEEcCCCC------------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            589999999996421            12599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374          486 RSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg~~~~~~~  532 (536)
                      .. ....+.++.+||+||++ .++..+|++||+.+.....|.+.++.+
T Consensus        72 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~  118 (279)
T PRK13650         72 TE-ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMK  118 (279)
T ss_pred             Cc-CcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHH
Confidence            53 23455678899999997 467788999999987666677655443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.82  E-value=8.7e-20  Score=177.63  Aligned_cols=110  Identities=24%  Similarity=0.389  Sum_probs=90.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++..           +...+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   70 (221)
T TIGR02211         2 LKCENLGKRYQEGK-----------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS   70 (221)
T ss_pred             EEEEeeeEEccCCC-----------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence            67899999996421           1125999999999999999999999999999999999999999999999999874


Q ss_pred             Cccc--HHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          487 SSVS--MTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       487 ~~~~--~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      ....  ....+ +.+||+||++.+++.+|++||+.+....++.+
T Consensus        71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~  114 (221)
T TIGR02211        71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS  114 (221)
T ss_pred             hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence            3111  12233 67999999999999999999998865555444

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1e-19  Score=180.96  Aligned_cols=105  Identities=23%  Similarity=0.468  Sum_probs=90.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|     ++|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~   68 (253)
T PRK14267          4 AIETVNLRVYYGSN---------------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL   68 (253)
T ss_pred             eEEEEeEEEEeCCe---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence            68999999999642               599999999999999999999999999999999999987     4999999


Q ss_pred             cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +|.++.. ..+....++.+||+||++.+++.+|++||+.+....++
T Consensus        69 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~  114 (253)
T PRK14267         69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG  114 (253)
T ss_pred             CCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC
Confidence            9998841 11233567789999999999999999999988765544

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.82  E-value=1.2e-19  Score=177.43  Aligned_cols=113  Identities=20%  Similarity=0.331  Sum_probs=92.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..           ....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~   73 (228)
T PRK10584          5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP   73 (228)
T ss_pred             ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEE
Confidence            4689999999996521           01249999999999999999999999999999999999999999999999998


Q ss_pred             cCCccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          485 IRSSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       485 i~~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      +.....  .... ++.+||+||++.+++.+|++||+.+....++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~  120 (228)
T PRK10584         74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS  120 (228)
T ss_pred             cccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCH
Confidence            743211  1122 3579999999999999999999988655555443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.82  E-value=8.6e-20  Score=175.02  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=88.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|++|+|+++|+++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~   66 (200)
T PRK13540          2 LDVIELDFDYHDQ---------------PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK   66 (200)
T ss_pred             EEEEEEEEEeCCe---------------eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccc
Confidence            6899999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .  .....++.+||+||+..+++.+|++||+.+..
T Consensus        67 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~   99 (200)
T PRK13540         67 K--DLCTYQKQLCFVGHRSGINPYLTLRENCLYDI   99 (200)
T ss_pred             c--CHHHHHhheEEeccccccCcCCCHHHHHHHHH
Confidence            2  33456788999999999999999999998764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.81  E-value=5.3e-20  Score=177.14  Aligned_cols=100  Identities=26%  Similarity=0.280  Sum_probs=84.4

Q ss_pred             EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (536)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~  487 (536)
                      +++|++|.|++.              +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus         1 ~~~~l~~~~~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   66 (205)
T cd03226           1 RIENISFSYKKG--------------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA   66 (205)
T ss_pred             CcccEEEEeCCc--------------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh
Confidence            367899999641              159999999999999999999999999999999999999999999999998732


Q ss_pred             cccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcC
Q 009374          488 SVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       488 ~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg  525 (536)
                          ...++.+||+||++. .+..+|++||+.++....+
T Consensus        67 ----~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~  101 (205)
T cd03226          67 ----KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD  101 (205)
T ss_pred             ----HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC
Confidence                345678999999974 2346799999988765444

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.81  E-value=6.8e-20  Score=175.87  Aligned_cols=98  Identities=24%  Similarity=0.343  Sum_probs=87.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|+++               .+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (201)
T cd03231           1 LEADELTCERDGR---------------ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD   65 (201)
T ss_pred             CEEEEEEEEeCCc---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            3689999999643               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .  .....++.+||+||++.+++.+|++||+.++.
T Consensus        66 ~--~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~   98 (201)
T cd03231          66 F--QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH   98 (201)
T ss_pred             c--ccHHhhhheEEeccccccCCCcCHHHHHHhhc
Confidence            2  22456788999999999999999999998864

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.81  E-value=8.1e-20  Score=180.16  Aligned_cols=100  Identities=31%  Similarity=0.498  Sum_probs=86.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.              ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   66 (241)
T cd03256           1 IEVENLSKTYPNG--------------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN   66 (241)
T ss_pred             CEEeeEEEecCCc--------------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence            3678999999641              15999999999999999999999999999999999999999999999999874


Q ss_pred             Cccc--HHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVS--MTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ....  ....++.+||+||++.+++.+|++||+.+.
T Consensus        67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~  102 (241)
T cd03256          67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG  102 (241)
T ss_pred             ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence            3211  345677899999999999999999999764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.81  E-value=8.1e-20  Score=191.84  Aligned_cols=100  Identities=24%  Similarity=0.383  Sum_probs=90.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++
T Consensus         3 ~L~~~nls~~y~~~---------------~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i   67 (402)
T PRK09536          3 MIDVSDLSVEFGDT---------------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV   67 (402)
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence            58999999999643               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .. .+.++.++++||+||+..++.++|++|++.+..
T Consensus        68 ~~-~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~  102 (402)
T PRK09536         68 EA-LSARAASRRVASVPQDTSLSFEFDVRQVVEMGR  102 (402)
T ss_pred             Cc-CCHHHHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence            53 244566788999999999999999999998743

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.1e-19  Score=183.80  Aligned_cols=117  Identities=19%  Similarity=0.318  Sum_probs=94.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++...          ..+.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus         2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i   71 (286)
T PRK13646          2 TIRFDNVSYTYQKGTP----------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI   71 (286)
T ss_pred             EEEEEEEEEEECCCCc----------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            4789999999964210          012599999999999999999999999999999999999999999999999998


Q ss_pred             CCc---ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSS---VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~---~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ...   .+...+|+.+|||||++  .+++ .|++||+.+.....|.+.++.++
T Consensus        72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~  123 (286)
T PRK13646         72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKN  123 (286)
T ss_pred             ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHH
Confidence            421   13456788999999985  5665 59999999876666776554443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.1e-19  Score=184.35  Aligned_cols=114  Identities=18%  Similarity=0.281  Sum_probs=93.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++...          ....+|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         3 l~~~~l~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (290)
T PRK13634          3 ITFQKVEHRYQYKTP----------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT   72 (290)
T ss_pred             EEEEEEEEEECCCCc----------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            789999999964310          0125999999999999999999999999999999999999999999999999884


Q ss_pred             C---cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          487 S---SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       487 ~---~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      .   .....+.++.+|||||++  .++ ..|++||+.+.....|.+.++.
T Consensus        73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~  121 (290)
T PRK13634         73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDA  121 (290)
T ss_pred             cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHH
Confidence            2   123445678899999985  466 4799999998766667665544

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.81  E-value=1.2e-19  Score=180.85  Aligned_cols=104  Identities=23%  Similarity=0.362  Sum_probs=89.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~   66 (258)
T PRK13548          2 MLEARNLSVRLGGR---------------TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL   66 (258)
T ss_pred             eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence            47899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .. ......++.+||+||++.+++.+|++|++.+.....+
T Consensus        67 ~~-~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~  105 (258)
T PRK13548         67 AD-WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG  105 (258)
T ss_pred             cc-CCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC
Confidence            42 2234456789999999999889999999988654333

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.4e-19  Score=178.77  Aligned_cols=109  Identities=22%  Similarity=0.382  Sum_probs=91.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (242)
T PRK11124          2 SIQLNGINCFYGAH---------------QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             EEEEEeeEEEECCe---------------eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence            47899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CC-----cccHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HHHhcCCChH
Q 009374          486 RS-----SVSMTNIQKSIGVCPQFNILWDALSGEEHLHL-FANIKGLPLD  529 (536)
Q Consensus       486 ~~-----~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~-~~~lkg~~~~  529 (536)
                      ..     ..+....++.+||+||++.+++.+|++||+.+ .....+.+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~  116 (242)
T PRK11124         67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKD  116 (242)
T ss_pred             ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHH
Confidence            21     11234567789999999999999999999975 3445555443

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.5e-19  Score=179.42  Aligned_cols=104  Identities=20%  Similarity=0.367  Sum_probs=90.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   67 (250)
T PRK14247          3 KIEIRDLKVSFGQV---------------EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL   67 (250)
T ss_pred             eEEEEeeEEEECCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence            58899999999642               599999999999999999999999999999999999874     7999999


Q ss_pred             cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       481 ~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +|.++.. .+....++.+||+||++.+++.+|++||+.+..+.++
T Consensus        68 ~g~~i~~-~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  111 (250)
T PRK14247         68 DGQDIFK-MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR  111 (250)
T ss_pred             CCEECCc-CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc
Confidence            9998853 2344667889999999999999999999998765444

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=2e-19  Score=174.35  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=91.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|++|.|+++               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus         9 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~   73 (214)
T PRK13543          9 PPLLAAHALAFSRNEE---------------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK   73 (214)
T ss_pred             cceEEEeeEEEecCCc---------------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE
Confidence            3569999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      ++..    ...++.+||++|++.+++.+|++||+.+....++.
T Consensus        74 ~i~~----~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~  112 (214)
T PRK13543         74 TATR----GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR  112 (214)
T ss_pred             Eccc----hhhhhceEEeecCcccccCCcHHHHHHHHHHhcCC
Confidence            8842    13356799999999999999999999988766554

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.81  E-value=1.7e-19  Score=179.73  Aligned_cols=108  Identities=18%  Similarity=0.354  Sum_probs=91.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~   68 (257)
T PRK10619          4 NKLNVIDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT   68 (257)
T ss_pred             ccEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence            358999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCc------------ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCC
Q 009374          485 IRSS------------VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLP  527 (536)
Q Consensus       485 i~~~------------~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~  527 (536)
                      +...            .+....++.+||+||++.+++.+|++||+.+.. .+.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~  124 (257)
T PRK10619         69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS  124 (257)
T ss_pred             cccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCC
Confidence            7310            123456788999999999999999999998643 334444

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.6e-19  Score=181.51  Aligned_cols=110  Identities=24%  Similarity=0.275  Sum_probs=91.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.              ..+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         4 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   69 (274)
T PRK13647          4 IIEVEDLHFRYKDG--------------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV   69 (274)
T ss_pred             eEEEEEEEEEeCCC--------------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            58999999999632              1599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .. ......++.+||+||++. .+..+|++||+.+.....+.+.++
T Consensus        70 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~  114 (274)
T PRK13647         70 NA-ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE  114 (274)
T ss_pred             CC-CCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHH
Confidence            53 234456778999999862 345689999999866555665443

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.81  E-value=1.8e-19  Score=180.79  Aligned_cols=103  Identities=18%  Similarity=0.300  Sum_probs=89.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         6 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   70 (269)
T PRK11831          6 NLVDMRGVSFTRGNR---------------CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN   70 (269)
T ss_pred             ceEEEeCeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence            479999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          485 IRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       485 i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      +....  +....++.+||+||+..+++.+|++||+.+...
T Consensus        71 i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~  110 (269)
T PRK11831         71 IPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLR  110 (269)
T ss_pred             ccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHH
Confidence            74211  123356789999999999999999999987543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.7e-19  Score=182.56  Aligned_cols=115  Identities=14%  Similarity=0.286  Sum_probs=91.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++...          ..+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         2 ~i~~~~l~~~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~   71 (287)
T PRK13641          2 SIKFENVDYIYSPGTP----------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI   71 (287)
T ss_pred             EEEEEEEEEEcCCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            4789999999974210          012599999999999999999999999999999999999999999999999987


Q ss_pred             CCc---ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          486 RSS---VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~---~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ...   .+....++.+||+||++  .++ .+|++||+.+.....+...++.
T Consensus        72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~  121 (287)
T PRK13641         72 TPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEA  121 (287)
T ss_pred             ccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHH
Confidence            421   12345677899999986  455 6899999987655555554443

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=1.9e-19  Score=182.33  Aligned_cols=116  Identities=19%  Similarity=0.312  Sum_probs=94.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++...          ....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 i~~~~v~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   71 (288)
T PRK13643          2 IKFEKVNYTYQPNSP----------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS   71 (288)
T ss_pred             EEEEEEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            789999999964210          0125999999999999999999999999999999999999999999999999984


Q ss_pred             C---cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          487 S---SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       487 ~---~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      .   .....+.++.+||++|++  .+++ .|+.|++.+.....|.+.+++++
T Consensus        72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~  122 (288)
T PRK13643         72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEK  122 (288)
T ss_pred             cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHH
Confidence            2   123456778899999986  6666 59999999877666776655443

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.81  E-value=1.8e-19  Score=178.78  Aligned_cols=108  Identities=22%  Similarity=0.418  Sum_probs=91.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (250)
T PRK11264          3 AIEVKNLVKKFHGQ---------------TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI   67 (250)
T ss_pred             cEEEeceEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            58899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcc-------cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH-hcCCCh
Q 009374          486 RSSV-------SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN-IKGLPL  528 (536)
Q Consensus       486 ~~~~-------~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~-lkg~~~  528 (536)
                      ....       +....++.+||+||+..+++.+|++||+.+... .++...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~  118 (250)
T PRK11264         68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK  118 (250)
T ss_pred             cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCH
Confidence            4211       123457789999999999999999999987543 344443

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.81  E-value=2.4e-19  Score=175.19  Aligned_cols=105  Identities=16%  Similarity=0.281  Sum_probs=90.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ++.++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus         5 ~~~i~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~   69 (225)
T PRK10247          5 SPLLQLQNVGYLAGDA---------------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE   69 (225)
T ss_pred             CceEEEeccEEeeCCc---------------eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCE
Confidence            3469999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ++.. .+....++.+||+||++.+++. |++||+.+...+++
T Consensus        70 ~~~~-~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~  109 (225)
T PRK10247         70 DIST-LKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN  109 (225)
T ss_pred             EcCc-CCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC
Confidence            8753 2334567789999999998875 99999988655544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.81  E-value=1.4e-19  Score=188.74  Aligned_cols=125  Identities=17%  Similarity=0.302  Sum_probs=96.9

Q ss_pred             EEEeeeEEEcCCCCcC-------ccc--cccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374          407 VQIRGLVKTFPGTRKI-------GCC--CKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~-------~~~--~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~  477 (536)
                      |+++||.|.|+.....       |.-  -..++.+.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            4678888888754220       000  0014455668999999999999999999999999999999999999999999


Q ss_pred             EEEcCE----ecCCc--ccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          478 ALIYGF----SIRSS--VSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       478 i~i~g~----~i~~~--~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      |+++|.    ++...  .+..+.| +.+||+||+..+++.+|++||+.+...+.|++.++.
T Consensus        81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~  141 (382)
T TIGR03415        81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAER  141 (382)
T ss_pred             EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHH
Confidence            999996    44211  1223333 579999999999999999999999877777765443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=2e-19  Score=180.39  Aligned_cols=113  Identities=20%  Similarity=0.292  Sum_probs=94.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.++++|++|.|++..             +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.
T Consensus         5 ~~~l~i~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~   71 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDA-------------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ   71 (269)
T ss_pred             CceEEEEEEEEEcCCCC-------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence            34689999999996531             15899999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ++.. .+...+++.+||+||++. +++..|+++++.+.....+.+.++
T Consensus        72 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~  118 (269)
T PRK13648         72 AITD-DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDE  118 (269)
T ss_pred             ECCc-CCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHH
Confidence            8842 344567788999999974 778889999998876555555443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.3e-19  Score=178.95  Aligned_cols=110  Identities=24%  Similarity=0.382  Sum_probs=92.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      .+.++++|+++.|+++               .+++|+||++++||++||+|+||||||||+++|+|+.+|     ++|+|
T Consensus        10 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   74 (258)
T PRK14268         10 QPQIKVENLNLWYGEK---------------QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV   74 (258)
T ss_pred             ceeEEEeeeEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE
Confidence            3469999999999642               599999999999999999999999999999999999875     89999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      .++|.++... .+....++.+||+||++.+++ +|++||+.+..+..+.+.+
T Consensus        75 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~  125 (258)
T PRK14268         75 SIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKK  125 (258)
T ss_pred             EECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHH
Confidence            9999987421 122345778999999999988 8999999987666665543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=2.2e-19  Score=179.03  Aligned_cols=105  Identities=21%  Similarity=0.386  Sum_probs=90.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         4 ~l~i~~v~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~   68 (258)
T PRK14241          4 RIDVKDLNIYYGSF---------------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL   68 (258)
T ss_pred             cEEEeeEEEEECCE---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence            58999999999642               599999999999999999999999999999999999874     7999999


Q ss_pred             cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +|.++.. .......++.+||+||+..+++.+|++||+.+....++
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~  114 (258)
T PRK14241         69 DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG  114 (258)
T ss_pred             CCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC
Confidence            9998732 11234567889999999999999999999988765554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.80  E-value=2.8e-19  Score=170.68  Aligned_cols=113  Identities=28%  Similarity=0.415  Sum_probs=94.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~  483 (536)
                      .+++++++|.|++.+         +...+.+++|+||++++||+++|+||||||||||+++|+|+.  +|++|+|.++|+
T Consensus         3 ~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~   73 (194)
T cd03213           3 TLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR   73 (194)
T ss_pred             EEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence            488999999996521         001136999999999999999999999999999999999999  999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ++..    ...++.+|||||++.+++.+|++|++.+..++..++..+.
T Consensus        74 ~~~~----~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~  117 (194)
T cd03213          74 PLDK----RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGER  117 (194)
T ss_pred             eCch----HhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHH
Confidence            8842    2567789999999999999999999998776545554443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.80  E-value=2.4e-19  Score=175.22  Aligned_cols=108  Identities=21%  Similarity=0.282  Sum_probs=89.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++..           +...+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   70 (228)
T cd03257           2 LEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL   70 (228)
T ss_pred             eEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            67899999996421           0125999999999999999999999999999999999999999999999999885


Q ss_pred             Cccc--HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcC
Q 009374          487 SSVS--MTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       487 ~~~~--~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ....  ....++.+||+||++  .+++.+|++||+.+.....+
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~  113 (228)
T cd03257          71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG  113 (228)
T ss_pred             ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhcc
Confidence            3211  235677899999998  57788999999987655444

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.4e-19  Score=181.10  Aligned_cols=113  Identities=27%  Similarity=0.346  Sum_probs=92.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++.              +.+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|+++|++
T Consensus         4 ~~l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~   69 (283)
T PRK13636          4 YILKVEELNYNYSDG--------------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP   69 (283)
T ss_pred             ceEEEEeEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE
Confidence            368999999999632              159999999999999999999999999999999999999999999999999


Q ss_pred             cCC-cccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          485 IRS-SVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       485 i~~-~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      +.. ..+..+.++.+||+||++. .+...|++||+.+.....+.+.++.
T Consensus        70 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~  118 (283)
T PRK13636         70 IDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEV  118 (283)
T ss_pred             CCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHH
Confidence            841 1223456788999999863 3345799999988665556665443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.1e-19  Score=181.54  Aligned_cols=113  Identities=16%  Similarity=0.295  Sum_probs=94.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---cEEEEc
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIY  481 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---G~i~i~  481 (536)
                      ..++++|+++.|++..             ..+++++||++++||++||+|+||||||||+++|+|+++|++   |+|+++
T Consensus         4 ~~l~i~~l~~~~~~~~-------------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~   70 (282)
T PRK13640          4 NIVEFKHVSFTYPDSK-------------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVD   70 (282)
T ss_pred             ceEEEEEEEEEcCCCC-------------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEEC
Confidence            3689999999996421             159999999999999999999999999999999999999998   899999


Q ss_pred             CEecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          482 GFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       482 g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      |.++.. ......++++|||||++. +++.+|++||+.+..+..+.+.++.
T Consensus        71 g~~~~~-~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~  120 (282)
T PRK13640         71 GITLTA-KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM  120 (282)
T ss_pred             CEECCc-CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHH
Confidence            999853 233456778999999974 6778999999987666666665443

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.6e-19  Score=178.72  Aligned_cols=111  Identities=22%  Similarity=0.338  Sum_probs=92.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        11 ~~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i   75 (260)
T PRK10744         11 PSKIQVRNLNFYYGKF---------------HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI   75 (260)
T ss_pred             CceEEEEEEEEEeCCe---------------EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence            4579999999999642               59999999999999999999999999999999999986     589999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK-GLPLDS  530 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk-g~~~~~  530 (536)
                      .++|.++.. ..+....++.+||+||+..+++ +|++||+.+..... +.+.++
T Consensus        76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~  128 (260)
T PRK10744         76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAE  128 (260)
T ss_pred             EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHH
Confidence            999998842 1233456788999999998887 89999998866543 444433

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.4e-19  Score=182.76  Aligned_cols=118  Identities=20%  Similarity=0.314  Sum_probs=94.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++...          ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         2 ~i~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~   71 (305)
T PRK13651          2 QIKVKNIVKIFNKKLP----------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE   71 (305)
T ss_pred             EEEEEEEEEEECCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceec
Confidence            3789999999975310          112599999999999999999999999999999999999999999999998765


Q ss_pred             CCc-----------------------ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSS-----------------------VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~-----------------------~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ...                       .+....++.+||+||++  .++ ..||+||+.+.....|.+.+++++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~  144 (305)
T PRK13651         72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKR  144 (305)
T ss_pred             ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHH
Confidence            210                       12345678899999984  455 5799999998776678776655443

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.7e-19  Score=180.52  Aligned_cols=116  Identities=17%  Similarity=0.309  Sum_probs=93.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|+|++..         +..++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         4 ~l~~~~l~~~~~~~~---------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i   74 (280)
T PRK13633          4 MIKCKNVSYKYESNE---------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT   74 (280)
T ss_pred             eEEEeeeEEEcCCCC---------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence            689999999997531         00123599999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      .........++.+||+||++.  ++ ..|+.|++.+.....|++.++.
T Consensus        75 ~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~  121 (280)
T PRK13633         75 SDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEI  121 (280)
T ss_pred             cccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHH
Confidence            432223456788999999963  45 4699999998776666664443

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=3e-19  Score=183.07  Aligned_cols=117  Identities=15%  Similarity=0.331  Sum_probs=94.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++...          ....+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|.+
T Consensus        20 ~~l~~~nl~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~   89 (320)
T PRK13631         20 IILRVKNLYCVFDEKQE----------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY   89 (320)
T ss_pred             ceEEEEeEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEE
Confidence            46999999999974310          11259999999999999999999999999999999999999999999999998


Q ss_pred             cCCc---------------ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374          485 IRSS---------------VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       485 i~~~---------------~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~  532 (536)
                      +...               .+....|+.+|||||++  .+++. |++||+.+.....+.+.++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~  153 (320)
T PRK13631         90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAK  153 (320)
T ss_pred             cccccccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHH
Confidence            7421               12456788999999986  57764 999999876554566555443

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=3.1e-19  Score=179.79  Aligned_cols=110  Identities=24%  Similarity=0.360  Sum_probs=90.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++..              .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~~--------------~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   68 (277)
T PRK13652          3 LIETRDLCYSYSGSK--------------EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI   68 (277)
T ss_pred             eEEEEEEEEEeCCCC--------------ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            478999999996421              499999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .. ...+..++.+||+||++. .+.++|++||+.+.....+.+.++
T Consensus        69 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~  113 (277)
T PRK13652         69 TK-ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEET  113 (277)
T ss_pred             Cc-CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHH
Confidence            43 233456778999999973 333689999998766544555443

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=3.3e-19  Score=177.27  Aligned_cols=107  Identities=22%  Similarity=0.387  Sum_probs=90.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      .+.++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus         4 ~~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   68 (253)
T PRK14242          4 PPKMEARGLSFFYGDF---------------QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI   68 (253)
T ss_pred             CcEEEEeeeEEEECCe---------------eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence            3579999999999642               59999999999999999999999999999999999864     689999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|+++... .+....++.+||+||++.+++ .|++||+.+....++.
T Consensus        69 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~  116 (253)
T PRK14242         69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV  116 (253)
T ss_pred             EECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC
Confidence            9999988421 123456788999999999988 5999999887655554

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.80  E-value=2.5e-19  Score=174.38  Aligned_cols=107  Identities=20%  Similarity=0.373  Sum_probs=91.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|+++.           +++.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   70 (220)
T TIGR02982         2 ISIRNLNHYYGHGS-----------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY   70 (220)
T ss_pred             EEEEEEEEEccCCC-----------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence            67899999996421           1236999999999999999999999999999999999999999999999999874


Q ss_pred             Cccc--HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          487 SSVS--MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       487 ~~~~--~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      ....  ....++.+||+||++.+++++|+.||+.+.....
T Consensus        71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~  110 (220)
T TIGR02982        71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ  110 (220)
T ss_pred             hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc
Confidence            2111  2245788999999999999999999999876654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=2.8e-19  Score=176.03  Aligned_cols=102  Identities=22%  Similarity=0.369  Sum_probs=89.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~   68 (237)
T PRK11614          4 VMLSFDKVSAHYGKI---------------QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKD   68 (237)
T ss_pred             cEEEEEeEEEeeCCc---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEe
Confidence            368999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +......+..++.+||+||++.+++.+|++||+.+..
T Consensus        69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~  105 (237)
T PRK11614         69 ITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGG  105 (237)
T ss_pred             cCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhh
Confidence            7432222235678999999999999999999998743

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.9e-19  Score=177.74  Aligned_cols=103  Identities=22%  Similarity=0.442  Sum_probs=88.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   67 (241)
T PRK14250          3 EIEFKEVSYSSFGK---------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI   67 (241)
T ss_pred             eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence            47899999999642               599999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .. ......++.+||+||++.+++ .|++||+.+....++
T Consensus        68 ~~-~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~  105 (241)
T PRK14250         68 KT-IDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG  105 (241)
T ss_pred             hh-cChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC
Confidence            42 233456778999999999887 699999987544433

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.80  E-value=2.2e-19  Score=168.98  Aligned_cols=99  Identities=24%  Similarity=0.462  Sum_probs=86.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (178)
T cd03229           1 LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT   65 (178)
T ss_pred             CEEEEEEEEECCe---------------EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            3688999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             Ccc-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSV-SMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~-~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ... .....++.++|+||++.+++.+|++|++.+.
T Consensus        66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~  100 (178)
T cd03229          66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG  100 (178)
T ss_pred             ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence            211 1345678899999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.80  E-value=4.3e-19  Score=182.71  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=97.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++||+|.|+......  .+....+.+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~--~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~   83 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQ--WFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGK   83 (331)
T ss_pred             CceEEEeCeEEEECCCCccc--cccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCE
Confidence            45799999999996421000  0000112347999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc--CCChHhHh
Q 009374          484 SIRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK--GLPLDSIK  532 (536)
Q Consensus       484 ~i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk--g~~~~~~~  532 (536)
                      ++....  +....|+++||+||++  .|++.+|+.||+.+.....  ++++++.+
T Consensus        84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~  138 (331)
T PRK15079         84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVK  138 (331)
T ss_pred             ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHH
Confidence            985322  2334678899999997  6899999999998765443  35554443

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=3.4e-19  Score=177.78  Aligned_cols=107  Identities=24%  Similarity=0.348  Sum_probs=90.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i  478 (536)
                      +..++++|++|.|++.               .+++|+||+|++||+++|+|+||||||||+++|+|+.+  |   ++|+|
T Consensus        10 ~~~l~i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i   74 (259)
T PRK14274         10 QEVYQINGMNLWYGQH---------------HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM   74 (259)
T ss_pred             CceEEEeeEEEEECCe---------------eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE
Confidence            4579999999999642               59999999999999999999999999999999999987  3   68999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +++|.++.. ..+....++.+||+||++.+++. |++||+.+....++.
T Consensus        75 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  122 (259)
T PRK14274         75 NYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT  122 (259)
T ss_pred             EECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC
Confidence            999998742 11234567889999999999885 999999887666654

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.80  E-value=3e-19  Score=174.15  Aligned_cols=105  Identities=30%  Similarity=0.532  Sum_probs=90.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 l~l~~v~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~   65 (223)
T TIGR03740         1 LETKNLSKRFGKQ---------------TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT   65 (223)
T ss_pred             CEEEeEEEEECCE---------------EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence            3688999999642               5999999999999999999999999999999999999999999999998873


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      .    .. ++.+||+||++.+++.+|++||+.++...++.+.+++
T Consensus        66 ~----~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~  105 (223)
T TIGR03740        66 R----KD-LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRI  105 (223)
T ss_pred             c----cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHH
Confidence            2    11 3579999999999999999999998776666554443

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.80  E-value=4.6e-19  Score=167.44  Aligned_cols=98  Identities=21%  Similarity=0.308  Sum_probs=85.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|                   +++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~~-------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (182)
T cd03215           4 VLEVRGLSVKG-------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV   64 (182)
T ss_pred             EEEEeccEEEe-------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            68899998876                   79999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~~~  522 (536)
                      ......+..++.+|||||+.   .+++.+|++||+.+...
T Consensus        65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~  104 (182)
T cd03215          65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL  104 (182)
T ss_pred             CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence            53222334577899999984   68899999999988654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.8e-19  Score=177.00  Aligned_cols=104  Identities=18%  Similarity=0.332  Sum_probs=90.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEcC
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYG  482 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~g  482 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+   |++|+|.++|
T Consensus         2 ~~~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g   66 (246)
T PRK14269          2 IAKTTNLNLFYGKK---------------QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG   66 (246)
T ss_pred             ceeeeeeEEEECCE---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECC
Confidence            47899999999642               59999999999999999999999999999999999974   7999999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +++.. .+....++.+||+||++.+++ .|++||+.+..+.++.
T Consensus        67 ~~i~~-~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~  108 (246)
T PRK14269         67 KDVKN-QDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM  108 (246)
T ss_pred             Eeccc-CCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc
Confidence            99853 234566788999999999997 6999999987666553

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=3.5e-19  Score=179.76  Aligned_cols=114  Identities=18%  Similarity=0.289  Sum_probs=91.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++...          ..+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i   71 (280)
T PRK13649          2 GINLQNVSYTYQAGTP----------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI   71 (280)
T ss_pred             eEEEEEEEEEcCCCCc----------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            4789999999974210          012599999999999999999999999999999999999999999999999987


Q ss_pred             CCc---ccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSS---VSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~---~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ...   .+....++.+||+||++  .+++ .|++||+.+.....+.+.++
T Consensus        72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~  120 (280)
T PRK13649         72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEE  120 (280)
T ss_pred             cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHH
Confidence            421   12355678899999996  4565 69999999876555554433

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=3.1e-19  Score=179.03  Aligned_cols=108  Identities=22%  Similarity=0.406  Sum_probs=91.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ...++++|+++.|++.               .+++|+||+|++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        11 ~~~l~i~nl~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v   75 (269)
T PRK14259         11 NIIISLQNVTISYGTF---------------EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV   75 (269)
T ss_pred             CceEEEEeEEEEECCE---------------EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            3579999999999642               59999999999999999999999999999999999987     699999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .++|.++.. ..+....++.+||+||++.+++. |++||+.+.+..++..
T Consensus        76 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~  124 (269)
T PRK14259         76 LFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT  124 (269)
T ss_pred             EECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc
Confidence            999998742 12334567789999999999984 9999999877665543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=3.1e-19  Score=173.98  Aligned_cols=115  Identities=27%  Similarity=0.464  Sum_probs=102.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++++..|++.              ..+++|+|+++++||+++|+|||||||||++++++|+++|++|.|.++|.++
T Consensus         3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~   68 (235)
T COG1122           3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT   68 (235)
T ss_pred             eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeec
Confidence            57899999999753              2699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ....+..++|+++|+++|++  .++.. ||+|.+.|...-.|++++++++++
T Consensus        69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv  119 (235)
T COG1122          69 SSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERV  119 (235)
T ss_pred             cchhhHHHhhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHH
Confidence            53245678899999999985  66655 999999999999999998877765

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.6e-19  Score=175.59  Aligned_cols=96  Identities=22%  Similarity=0.452  Sum_probs=82.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++|++..|++.               +||+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+.|.+
T Consensus         3 ~~i~v~nl~v~y~~~---------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~   67 (254)
T COG1121           3 PMIEVENLTVSYGNR---------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKP   67 (254)
T ss_pred             cEEEEeeeEEEECCE---------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccc
Confidence            468999999999753               49999999999999999999999999999999999999999999999988


Q ss_pred             cCCcccHHHhhcceEEEcCC---CCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQF---NILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~---~~l~~~lTv~e~L~~~  520 (536)
                      ++..    .-+.+|||+||.   |.-|| +||+|-+.+.
T Consensus        68 ~~~~----~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g  101 (254)
T COG1121          68 VRKR----RKRLRIGYVPQKSSVDRSFP-ITVKDVVLLG  101 (254)
T ss_pred             cccc----ccCCeEEEcCcccccCCCCC-cCHHHHHHcc
Confidence            7421    114689999995   34444 6999999885

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.80  E-value=3.7e-19  Score=166.66  Aligned_cols=95  Identities=29%  Similarity=0.575  Sum_probs=84.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   65 (173)
T cd03230           1 IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK   65 (173)
T ss_pred             CEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            3678999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLH  518 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~  518 (536)
                      .. . ...++.+||+||++.+++.+|++||+.
T Consensus        66 ~~-~-~~~~~~i~~~~q~~~~~~~~tv~~~~~   95 (173)
T cd03230          66 KE-P-EEVKRRIGYLPEEPSLYENLTVRENLK   95 (173)
T ss_pred             cc-h-HhhhccEEEEecCCccccCCcHHHHhh
Confidence            32 2 456778999999999999999999986

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=3.2e-19  Score=177.54  Aligned_cols=102  Identities=28%  Similarity=0.439  Sum_probs=88.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   68 (255)
T PRK11300          4 PLLSVSGLMMRFGGL---------------LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQH   68 (255)
T ss_pred             ceEEEeeEEEEECCE---------------EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEE
Confidence            368999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +......+..+..++|+||++.+++.+|++||+.+..
T Consensus        69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~  105 (255)
T PRK11300         69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQ  105 (255)
T ss_pred             CCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhh
Confidence            8532212223456999999999999999999998753

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.9e-19  Score=177.44  Aligned_cols=107  Identities=20%  Similarity=0.351  Sum_probs=90.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        17 ~~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I   81 (267)
T PRK14235         17 EIKMRARDVSVFYGEK---------------QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI   81 (267)
T ss_pred             CceEEEEeEEEEECCE---------------EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence            4479999999999642               599999999999999999999999999999999999874     89999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +++|.++... .+....++.+||+||++.+++. |++||+.+....++.
T Consensus        82 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~  129 (267)
T PRK14235         82 TLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL  129 (267)
T ss_pred             EECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc
Confidence            9999988421 1234567889999999998885 999999876655553

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.3e-19  Score=176.26  Aligned_cols=106  Identities=22%  Similarity=0.417  Sum_probs=90.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~  479 (536)
                      +.++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.
T Consensus         3 ~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~   67 (251)
T PRK14270          3 IKMESKNLNLWYGEK---------------QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL   67 (251)
T ss_pred             cEEEEEEeEEEECCe---------------eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE
Confidence            468999999999642               599999999999999999999999999999999999875     799999


Q ss_pred             EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      ++|.++... .+....++.+||+||++.+++ +|++||+.+.....+.
T Consensus        68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~  114 (251)
T PRK14270         68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI  114 (251)
T ss_pred             ECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC
Confidence            999988421 123455778999999999997 8999999987666554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.80  E-value=1.9e-19  Score=180.55  Aligned_cols=106  Identities=21%  Similarity=0.371  Sum_probs=88.7

Q ss_pred             EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (536)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~  487 (536)
                      .+++++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus        26 ~~~~~~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~   90 (269)
T cd03294          26 SKEEILKKTGQT---------------VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAA   90 (269)
T ss_pred             hhhhhhhhcCCc---------------eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc
Confidence            456888888643               59999999999999999999999999999999999999999999999998742


Q ss_pred             ccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          488 SVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       488 ~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      ...  ..+. ++.+||+||++.+++.+|++||+.+.....+.+.
T Consensus        91 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  134 (269)
T cd03294          91 MSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR  134 (269)
T ss_pred             cChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCH
Confidence            111  1112 3579999999999999999999998766666543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.80  E-value=3.8e-19  Score=176.75  Aligned_cols=107  Identities=21%  Similarity=0.338  Sum_probs=89.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++||++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (252)
T TIGR03005         1 VRFSDVTKRFGIL---------------TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY   65 (252)
T ss_pred             CEEEEEEEEeCCe---------------eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4688999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             Cc------------ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCCh
Q 009374          487 SS------------VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPL  528 (536)
Q Consensus       487 ~~------------~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~  528 (536)
                      ..            .+....++.+||+||++.+++.+|++||+.+.. ..++...
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~  120 (252)
T TIGR03005        66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR  120 (252)
T ss_pred             ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCH
Confidence            21            112355788999999999999999999998743 2334443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=5.2e-19  Score=175.74  Aligned_cols=106  Identities=21%  Similarity=0.341  Sum_probs=90.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i~  479 (536)
                      ..++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+  |   ++|+|.
T Consensus         3 ~~l~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~   67 (252)
T PRK14256          3 NKVKLEQLNVHFGKN---------------HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKIL   67 (252)
T ss_pred             cEEEEEEEEEEeCCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEE
Confidence            358999999999642               59999999999999999999999999999999999986  4   689999


Q ss_pred             EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ++|.++... .+....++.+||+||+..+++.+|++||+.+..+..+
T Consensus        68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~  114 (252)
T PRK14256         68 LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG  114 (252)
T ss_pred             ECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC
Confidence            999988421 1234567889999999999999999999987655444

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.79  E-value=2.3e-19  Score=177.22  Aligned_cols=99  Identities=25%  Similarity=0.487  Sum_probs=86.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.              ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (243)
T TIGR02315         2 LEVENLSKVYPNG--------------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT   67 (243)
T ss_pred             eEEEeeeeecCCC--------------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence            6789999999621              15999999999999999999999999999999999999999999999999874


Q ss_pred             Ccc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          487 SSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       487 ~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ...  +....++.+||+||++.+++.+|++||+.+
T Consensus        68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~  102 (243)
T TIGR02315        68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLH  102 (243)
T ss_pred             hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhh
Confidence            211  123457789999999999999999999975

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=4.5e-19  Score=178.61  Aligned_cols=113  Identities=20%  Similarity=0.344  Sum_probs=94.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++..            .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++
T Consensus         4 ~l~~~~l~~~~~~~~------------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i   71 (277)
T PRK13642          4 ILEVENLVFKYEKES------------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL   71 (277)
T ss_pred             eEEEEEEEEEcCCCC------------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence            689999999996421            12599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      .. ....+.++.+||+||++. .++..|+.||+.+.....+.+.++.
T Consensus        72 ~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~  117 (277)
T PRK13642         72 TA-ENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEM  117 (277)
T ss_pred             Cc-CCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHH
Confidence            53 234566788999999974 6778899999987655555554443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=5e-19  Score=176.05  Aligned_cols=106  Identities=21%  Similarity=0.359  Sum_probs=90.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~  479 (536)
                      ..++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|     ++|+|.
T Consensus         6 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   70 (254)
T PRK14273          6 AIIETENLNLFYTDF---------------KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVI   70 (254)
T ss_pred             ceEEEeeeEEEeCCc---------------eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEE
Confidence            479999999999642               599999999999999999999999999999999999987     589999


Q ss_pred             EcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          480 IYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       480 i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      ++|.++.. ..+....++.+||+||++.+++ +|++||+.+....++.
T Consensus        71 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~  117 (254)
T PRK14273         71 YEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT  117 (254)
T ss_pred             ECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC
Confidence            99998742 1123456788999999998885 9999999987655543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.79  E-value=3.4e-19  Score=174.87  Aligned_cols=103  Identities=27%  Similarity=0.467  Sum_probs=89.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~   65 (232)
T cd03300           1 IELENVSKFYGGF---------------VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT   65 (232)
T ss_pred             CEEEeEEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            3688999999642               5999999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      ..   ...++.+|||||++.+++.+|++||+.+....++..
T Consensus        66 ~~---~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~  103 (232)
T cd03300          66 NL---PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP  103 (232)
T ss_pred             cC---ChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC
Confidence            21   223678999999999999999999998866666554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.79  E-value=3.5e-19  Score=175.41  Aligned_cols=103  Identities=22%  Similarity=0.423  Sum_probs=89.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++.               .+++|+||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         1 i~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~   65 (237)
T TIGR00968         1 IEIANISKRFGSF---------------QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT   65 (237)
T ss_pred             CEEEEEEEEECCe---------------eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            3688999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .   ....++.+|||||++.+++.+|++||+.+....++..
T Consensus        66 ~---~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~  103 (237)
T TIGR00968        66 R---VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHP  103 (237)
T ss_pred             c---CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCC
Confidence            2   1234678999999999999999999998766655543

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=4.7e-19  Score=177.94  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=90.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   66 (271)
T PRK13638          2 LATSDLWFRYQDE---------------PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLD   66 (271)
T ss_pred             eEEEEEEEEcCCc---------------ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcc
Confidence            6899999999642               5999999999999999999999999999999999999999999999999874


Q ss_pred             C-cccHHHhhcceEEEcCCCCC-CCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 S-SVSMTNIQKSIGVCPQFNIL-WDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~-~~~~~~~~~~ig~~pQ~~~l-~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      . ..+....++.+||+||++.+ +...|+.||+.+.....|.+.++
T Consensus        67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~  112 (271)
T PRK13638         67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAE  112 (271)
T ss_pred             cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHH
Confidence            1 12234567789999999753 34568999998876666655443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.3e-19  Score=169.09  Aligned_cols=114  Identities=18%  Similarity=0.285  Sum_probs=98.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||++.|+++..           ..+||+++||++.+||++||+|++|||||||.++|+|+.+|++|+|.++|.+.
T Consensus         3 ~l~v~nl~~~y~~~~~-----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~   71 (252)
T COG1124           3 LLSVRNLSIVYGGGKF-----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL   71 (252)
T ss_pred             eEEEeceEEEecCCcc-----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence            6899999999987532           12699999999999999999999999999999999999999999999999877


Q ss_pred             CCcccHHHhhcceEEEcCC--CCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSSVSMTNIQKSIGVCPQF--NILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~--~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ......+..++.+.++||+  ..|.|..||++.|.-..+.+|++..+
T Consensus        72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~  118 (252)
T COG1124          72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ  118 (252)
T ss_pred             CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH
Confidence            5433334667889999998  47899999999999988888876543

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.79  E-value=4.3e-19  Score=176.62  Aligned_cols=95  Identities=17%  Similarity=0.230  Sum_probs=86.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus        11 ~~l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~   75 (257)
T PRK11247         11 TPLLLNAVSKRYGER---------------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP   75 (257)
T ss_pred             CcEEEEEEEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence            469999999999642               59999999999999999999999999999999999999999999999876


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +      ...++.+||+||++.+++.+|++||+.+.
T Consensus        76 ~------~~~~~~i~~v~q~~~l~~~~tv~enl~~~  105 (257)
T PRK11247         76 L------AEAREDTRLMFQDARLLPWKKVIDNVGLG  105 (257)
T ss_pred             H------HHhhCceEEEecCccCCCCCcHHHHHHhc
Confidence            5      24567899999999999999999999874

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.79  E-value=4.7e-19  Score=174.25  Aligned_cols=104  Identities=18%  Similarity=0.374  Sum_probs=89.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++                ++++|+||++++||+++|+|+|||||||++++|+|+.+|++|+|+++|.++.
T Consensus         1 l~~~~l~~~~~~----------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~   64 (235)
T cd03299           1 LKVENLSKDWKE----------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT   64 (235)
T ss_pred             CeeEeEEEEeCC----------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence            357899999953                3899999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      ..   ...++.+|||||++.+++.+|++||+.+.....+.+..
T Consensus        65 ~~---~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~  104 (235)
T cd03299          65 NL---PPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKK  104 (235)
T ss_pred             cC---ChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHH
Confidence            21   22367899999999999999999999876555555433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=7e-19  Score=174.59  Aligned_cols=105  Identities=21%  Similarity=0.395  Sum_probs=89.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   67 (250)
T PRK14240          3 KISVKDLDLFYGDF---------------QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL   67 (250)
T ss_pred             eEEEEEEEEEECCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence            47899999999642               599999999999999999999999999999999998763     6999999


Q ss_pred             cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +|.++.. ..+....|+.+||+||++.+++ +|++||+.+....++.
T Consensus        68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~  113 (250)
T PRK14240         68 DGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI  113 (250)
T ss_pred             CCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC
Confidence            9998842 1123456788999999999888 8999999987666664

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.79  E-value=4.4e-19  Score=175.14  Aligned_cols=101  Identities=23%  Similarity=0.339  Sum_probs=85.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCEe
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS  484 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~~  484 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.  +|++|+|.++|.+
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~   65 (243)
T TIGR01978         1 LKIKDLHVSVEDK---------------EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQD   65 (243)
T ss_pred             CeEeeEEEEECCE---------------EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEe
Confidence            4688999999642               5999999999999999999999999999999999995  7999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      +.........+..+||+||++.+++.+|++|++.+...
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~  103 (243)
T TIGR01978        66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALN  103 (243)
T ss_pred             cCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHH
Confidence            74321112234559999999999999999999987543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=5.1e-19  Score=177.10  Aligned_cols=101  Identities=20%  Similarity=0.302  Sum_probs=89.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus         9 ~~~l~i~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~   73 (265)
T PRK10575          9 DTTFALRNVSFRVPGR---------------TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ   73 (265)
T ss_pred             CceEEEeeEEEEECCE---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence            3469999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ++.. ....+.++.+||+||+..+++.+|+.|++.+.
T Consensus        74 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  109 (265)
T PRK10575         74 PLES-WSSKAFARKVAYLPQQLPAAEGMTVRELVAIG  109 (265)
T ss_pred             ehhh-CCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence            8742 23345677899999998899999999999874

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=3.7e-19  Score=163.31  Aligned_cols=110  Identities=22%  Similarity=0.362  Sum_probs=97.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+.+++++-+|.+..             ..|++|+|++|.+||.+.+|||+||||||++|+++|+.+|+.|+|.++|+.|
T Consensus         3 ~l~~~~~sl~y~g~~-------------~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i   69 (259)
T COG4525           3 MLNVSHLSLSYEGKP-------------RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI   69 (259)
T ss_pred             eeehhheEEecCCcc-------------hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEec
Confidence            356788999998652             3699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ...      ...-|+++|++.|+|-+|+.||++|..+++|+++.+..+.
T Consensus        70 ~gP------gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~  112 (259)
T COG4525          70 EGP------GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI  112 (259)
T ss_pred             cCC------CccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence            532      2235999999999999999999999999999998776554

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.79  E-value=8.8e-19  Score=175.59  Aligned_cols=107  Identities=24%  Similarity=0.395  Sum_probs=90.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ...++++|+++.|++.               .+++|+||++++||++||+|+||||||||+++|+|+++     |++|+|
T Consensus        18 ~~~l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (267)
T PRK14237         18 EIALSTKDLHVYYGKK---------------EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI   82 (267)
T ss_pred             CeEEEEeeEEEEECCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence            3479999999999542               59999999999999999999999999999999999986     589999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|.++... .+....++.+||+||++.+++ .|++||+.+.....|.
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~  130 (267)
T PRK14237         83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGV  130 (267)
T ss_pred             EECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCC
Confidence            9999988421 123456788999999998887 5999999886554443

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.7e-20  Score=169.48  Aligned_cols=110  Identities=21%  Similarity=0.363  Sum_probs=96.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +++++|++|+|+++               .+++++|+++++|.+++++||||||||||++|++++.++++|+|+++|+++
T Consensus         1 MI~i~nv~K~y~~~---------------~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~   65 (252)
T COG4604           1 MITIENVSKSYGTK---------------VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL   65 (252)
T ss_pred             CeeehhhhHhhCCE---------------EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeec
Confidence            37889999999764               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH--HHHhcCCChHhH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL--FANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~--~~~lkg~~~~~~  531 (536)
                      .+ ++.++..+.+.+.-|.+.+-..+||+|-+.|  |..-+|.+.++.
T Consensus        66 ~~-~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD  112 (252)
T COG4604          66 TS-TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKED  112 (252)
T ss_pred             cc-CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHH
Confidence            74 4566777889999999999999999999988  334566654443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.78  E-value=8e-19  Score=171.23  Aligned_cols=114  Identities=23%  Similarity=0.327  Sum_probs=88.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc--CE-
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY--GF-  483 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~--g~-  483 (536)
                      ++++|++|.|++.++        ....+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++  |. 
T Consensus         2 l~~~~l~~~~~~~~~--------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~   73 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQ--------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW   73 (224)
T ss_pred             EEEEeeEEEeecccC--------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCc
Confidence            688999999964210        0011369999999999999999999999999999999999999999999998  43 


Q ss_pred             -ecCCcc--cHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          484 -SIRSSV--SMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       484 -~i~~~~--~~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                       ++....  +..+. ++.+||+||+..+++.+|++|++.+.....|...
T Consensus        74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~  122 (224)
T TIGR02324        74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPR  122 (224)
T ss_pred             cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCH
Confidence             442111  11122 4579999999999999999999987655445543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.78  E-value=5.6e-19  Score=176.86  Aligned_cols=101  Identities=19%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus         5 ~~~l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~   69 (265)
T PRK10253          5 VARLRGEQLTLGYGKY---------------TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE   69 (265)
T ss_pred             ccEEEEEEEEEEECCE---------------EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence            3479999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ++.. .+....++.+|||||++.+++.+|++||+.+.
T Consensus        70 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~  105 (265)
T PRK10253         70 HIQH-YASKEVARRIGLLAQNATTPGDITVQELVARG  105 (265)
T ss_pred             Ehhh-CCHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence            8742 23345567899999999999999999999874

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.78  E-value=9e-19  Score=175.53  Aligned_cols=112  Identities=22%  Similarity=0.253  Sum_probs=90.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|+|+++...      ++.+.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~~~~~~~~------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   77 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGW------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL   77 (267)
T ss_pred             eEEEeceEEEecCCCCc------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence            68999999999642100      001123699999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHHHhc
Q 009374          486 RSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLFANIK  524 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~~~lk  524 (536)
                      .. ...+..++.+||+||++.  +++.+|+.|++.+..+..
T Consensus        78 ~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~  117 (267)
T PRK15112         78 HF-GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN  117 (267)
T ss_pred             CC-CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence            42 223344567999999975  678899999998865543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1e-18  Score=173.51  Aligned_cols=106  Identities=19%  Similarity=0.333  Sum_probs=90.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i  480 (536)
                      .++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|+     +|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   68 (252)
T PRK14272          4 LLSAQDVNIYYGDK---------------QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILL   68 (252)
T ss_pred             EEEEeeeEEEECCE---------------EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEE
Confidence            58899999999642               5999999999999999999999999999999999999875     899999


Q ss_pred             cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +|.++... .+....++.+||+||++.+++.+|+.||+.+.....+.
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~  115 (252)
T PRK14272         69 DGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI  115 (252)
T ss_pred             CCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC
Confidence            99987421 12335677899999999999999999999876554443

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=9.7e-19  Score=176.03  Aligned_cols=107  Identities=33%  Similarity=0.479  Sum_probs=87.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (275)
T PRK13639          2 LETRDLKYSYPDG--------------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK   67 (275)
T ss_pred             EEEEEEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence            6799999999632              14999999999999999999999999999999999999999999999999884


Q ss_pred             C-cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 S-SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~-~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      . .......++.+||+||++  .++ .+|++||+.+.....+...
T Consensus        68 ~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~  111 (275)
T PRK13639         68 YDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSK  111 (275)
T ss_pred             cccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCH
Confidence            2 112345678899999996  344 5799999986543334443

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=2.1e-19  Score=164.88  Aligned_cols=102  Identities=28%  Similarity=0.413  Sum_probs=93.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC-E
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-F  483 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g-~  483 (536)
                      ..+.+++++.+|++-               .||+++||+|.+||.-+|+|||||||||+|..|+|-.+|+.|+++++| .
T Consensus         4 ~iL~~~~vsVsF~GF---------------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~   68 (249)
T COG4674           4 IILYLDGVSVSFGGF---------------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT   68 (249)
T ss_pred             ceEEEeceEEEEcce---------------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCch
Confidence            468999999999763               699999999999999999999999999999999999999999999999 8


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      |+....+.+-+|..||--+|.+..|+++||+|||++-.
T Consensus        69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~  106 (249)
T COG4674          69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELAL  106 (249)
T ss_pred             hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHh
Confidence            88766666778889999999999999999999998843

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=1.2e-19  Score=177.68  Aligned_cols=131  Identities=21%  Similarity=0.317  Sum_probs=108.1

Q ss_pred             ceEEEeeeEEEcCCCCc-------Cccc--cccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374          405 VAVQIRGLVKTFPGTRK-------IGCC--CKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~-------~~~~--~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~  475 (536)
                      ..++++|+.|.|+....       .|..  -..++++-+..|+|+||+|++|||+.|.|-+|||||||+|++.++.+||+
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~   82 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR   82 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence            36899999999986421       0000  00145556678999999999999999999999999999999999999999


Q ss_pred             cEEEEcCEecCC--cccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          476 GDALIYGFSIRS--SVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       476 G~i~i~g~~i~~--~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      |+|.++|.|+..  ..+.++.| +++++++|+.+|+|+.||.||..|...++|+++++.++.+
T Consensus        83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a  145 (386)
T COG4175          83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA  145 (386)
T ss_pred             ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHH
Confidence            999999999853  23344554 5799999999999999999999999999999998876654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.78  E-value=1.3e-18  Score=165.76  Aligned_cols=110  Identities=27%  Similarity=0.376  Sum_probs=91.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~  483 (536)
                      .++++++++.|++..           +.+.+++|+||++++||+++|+|+||||||||+++|+|+.  +|++|++.++|+
T Consensus         3 ~l~~~~l~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~   71 (192)
T cd03232           3 VLTWKNLNYTVPVKG-----------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR   71 (192)
T ss_pred             EEEEeeeEEEecCCC-----------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE
Confidence            578999999996421           0125999999999999999999999999999999999986  489999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ++.     ...++.+||++|++.+++.+|++||+.+...++.++..+.
T Consensus        72 ~~~-----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~  114 (192)
T cd03232          72 PLD-----KNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR  114 (192)
T ss_pred             ehH-----HHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHh
Confidence            873     3556789999999999999999999998655445554443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=9.3e-19  Score=173.57  Aligned_cols=105  Identities=22%  Similarity=0.369  Sum_probs=89.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   67 (249)
T PRK14253          3 KFNIENLDLFYGEN---------------QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTM   67 (249)
T ss_pred             eEEEeccEEEECCe---------------eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence            57899999999642               599999999999999999999999999999999999986     5999999


Q ss_pred             cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          481 YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       481 ~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +|.++....+....++.+||+||++.+++ .|+.||+.+.....+.
T Consensus        68 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~  112 (249)
T PRK14253         68 DGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGI  112 (249)
T ss_pred             CCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCC
Confidence            99987422234466788999999999997 8999999876544443

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.78  E-value=6.8e-19  Score=175.33  Aligned_cols=98  Identities=21%  Similarity=0.271  Sum_probs=87.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   66 (256)
T TIGR03873         2 LRLSRVSWSAGGR---------------LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH   66 (256)
T ss_pred             ceEEeEEEEECCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence            6789999999642               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . ......++.+||+||++.+++.+|++||+.+.
T Consensus        67 ~-~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   99 (256)
T TIGR03873        67 G-LSRRARARRVALVEQDSDTAVPLTVRDVVALG   99 (256)
T ss_pred             c-CCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence            3 23345567899999998888899999999875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.78  E-value=8.2e-19  Score=169.11  Aligned_cols=101  Identities=20%  Similarity=0.323  Sum_probs=87.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++++++.|++..             ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~~~~~~-------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   71 (207)
T cd03369           5 GEIEVENLSVRYAPDL-------------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID   71 (207)
T ss_pred             CeEEEEEEEEEeCCCC-------------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence            3589999999996421             159999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.. ....+.++.+|||||++.+++ .|++||+.++
T Consensus        72 ~~~-~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~  105 (207)
T cd03369          72 IST-IPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPF  105 (207)
T ss_pred             hHH-CCHHHHHhhEEEEecCCcccC-ccHHHHhccc
Confidence            742 234456788999999998887 5999999764

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.78  E-value=1.1e-18  Score=174.63  Aligned_cols=111  Identities=14%  Similarity=0.174  Sum_probs=88.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +++++|++|.|++....      ++.+.+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   75 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLF------GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL   75 (265)
T ss_pred             eEEEEeEEEEeccCccc------cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence            47899999999632000      000123699999999999999999999999999999999999999999999999988


Q ss_pred             CCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHH
Q 009374          486 RSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~  522 (536)
                      ....  +....++.+||+||++  .+++.+|++|++.+...
T Consensus        76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~  116 (265)
T TIGR02769        76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLR  116 (265)
T ss_pred             cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHH
Confidence            5321  1223567899999996  57788999999976543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.2e-18  Score=176.75  Aligned_cols=115  Identities=18%  Similarity=0.334  Sum_probs=91.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|+++..          ..+.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~i~nl~~~~~~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   74 (289)
T PRK13645          5 KDIILDNVSYTYAKKTP----------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA   74 (289)
T ss_pred             ceEEEEEEEEEeCCCCc----------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            35899999999965310          01249999999999999999999999999999999999999999999999998


Q ss_pred             cCC----cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          485 IRS----SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       485 i~~----~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      +..    ..+....++.+||+||++  .+++ .|++||+.+....++...++
T Consensus        75 i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~  125 (289)
T PRK13645         75 IPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQE  125 (289)
T ss_pred             ccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHH
Confidence            731    112345677899999996  3444 69999998765545554433

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=173.39  Aligned_cols=106  Identities=21%  Similarity=0.373  Sum_probs=89.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ...++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        19 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   83 (268)
T PRK14248         19 EHILEVKDLSIYYGEK---------------RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI   83 (268)
T ss_pred             CceEEEEEEEEEeCCc---------------eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence            4579999999999642               59999999999999999999999999999999999864     799999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .++|.++... .+....++.+||+||++.+++. |++||+.+.....+
T Consensus        84 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~  130 (268)
T PRK14248         84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG  130 (268)
T ss_pred             EECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC
Confidence            9999988421 1233567789999999999885 99999987654443

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=6.8e-19  Score=168.07  Aligned_cols=117  Identities=25%  Similarity=0.347  Sum_probs=89.6

Q ss_pred             eEEEeeeEEEcCCCCcC--------cccc-ccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          406 AVQIRGLVKTFPGTRKI--------GCCC-KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~--------~~~~-~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      .|+++||+|.|+-....        -.+. ..++...+.||+|+||++++||.+||+|+||||||||+++|+|.++||+|
T Consensus         3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134           3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            57788888887643100        0000 00234567899999999999999999999999999999999999999999


Q ss_pred             EEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          477 DALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       477 ~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      +|.++|.-..    .  +  .+|.     .+-+++|++||+.+.+.+.|++++++++.+
T Consensus        83 ~v~v~G~v~~----l--i--~lg~-----Gf~pelTGreNi~l~~~~~G~~~~ei~~~~  128 (249)
T COG1134          83 KVKVTGKVAP----L--I--ELGA-----GFDPELTGRENIYLRGLILGLTRKEIDEKV  128 (249)
T ss_pred             eEEEcceEeh----h--h--hccc-----CCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence            9999995321    1  1  1222     345789999999999999999999988765

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.78  E-value=5.8e-19  Score=170.65  Aligned_cols=95  Identities=20%  Similarity=0.363  Sum_probs=82.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .  .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   63 (211)
T cd03298           1 VRLDKIRFSYGEQ---------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT   63 (211)
T ss_pred             CEEEeEEEEeCCE---------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence            3688999999531               2  2999999999999999999999999999999999999999999999884


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      ..   ...++.+||+||++.+++.+|++||+.+..
T Consensus        64 ~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~   95 (211)
T cd03298          64 AA---PPADRPVSMLFQENNLFAHLTVEQNVGLGL   95 (211)
T ss_pred             cC---CHhHccEEEEecccccCCCCcHHHHHhccc
Confidence            32   223578999999999999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2e-18  Score=177.62  Aligned_cols=121  Identities=21%  Similarity=0.233  Sum_probs=95.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||+|.|+.....  .   .+.+.+.||+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         4 ~~l~v~nl~~~~~~~~~~--~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~   78 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGL--F---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD   78 (327)
T ss_pred             ceEEEeeeEEEEcCCCCc--c---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence            468999999999642110  0   01123479999999999999999999999999999999999999999999999999


Q ss_pred             cCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374          485 IRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDS  530 (536)
Q Consensus       485 i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~  530 (536)
                      +....  +.+..|+++||+||++  .|.+.+|+.+++....+.. ++.+++
T Consensus        79 l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~  129 (327)
T PRK11308         79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE  129 (327)
T ss_pred             cCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHH
Confidence            85322  2345678899999997  6999999999997655443 444443

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.7e-18  Score=174.06  Aligned_cols=107  Identities=21%  Similarity=0.389  Sum_probs=91.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ...++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        23 ~~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i   87 (272)
T PRK14236         23 QTALEVRNLNLFYGDK---------------QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI   87 (272)
T ss_pred             CcEEEEEEEEEEECCe---------------eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE
Confidence            4579999999999642               59999999999999999999999999999999999987     489999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|.++... .+....++.+||+||+..+++. |++||+.+.....+.
T Consensus        88 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  135 (272)
T PRK14236         88 RLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI  135 (272)
T ss_pred             EECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence            9999988421 1234567889999999999986 999999887665554

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.78  E-value=1.1e-18  Score=163.38  Aligned_cols=96  Identities=21%  Similarity=0.412  Sum_probs=83.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.+             ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (173)
T cd03246           1 LEVENVSFRYPGAE-------------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS   67 (173)
T ss_pred             CEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence            36889999996421             25999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHL  517 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L  517 (536)
                      . ......++.+||++|++.+++. |++||+
T Consensus        68 ~-~~~~~~~~~i~~~~q~~~~~~~-tv~~~l   96 (173)
T cd03246          68 Q-WDPNELGDHVGYLPQDDELFSG-SIAENI   96 (173)
T ss_pred             c-CCHHHHHhheEEECCCCccccC-cHHHHC
Confidence            3 2344567889999999988875 999997

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.6e-18  Score=173.99  Aligned_cols=107  Identities=23%  Similarity=0.352  Sum_probs=90.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      .+.++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++     |++|+|
T Consensus        22 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   86 (271)
T PRK14238         22 KVVFDTQNLNLWYGED---------------HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI   86 (271)
T ss_pred             ceEEEEeeeEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence            3479999999999642               59999999999999999999999999999999999987     699999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|.++.. .......++.+||+||++.+++. |++||+.+..+.++.
T Consensus        87 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~  134 (271)
T PRK14238         87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI  134 (271)
T ss_pred             EECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCC
Confidence            999998742 11234567889999999998874 999999986655444

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=171.88  Aligned_cols=107  Identities=19%  Similarity=0.315  Sum_probs=90.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i  478 (536)
                      +..++++|++|.|++.               .+++|+||++.+||+++|+|+||||||||+++|+|+.+  |   ++|+|
T Consensus         3 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   67 (252)
T PRK14255          3 KKIITSSDVHLFYGKF---------------EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV   67 (252)
T ss_pred             cceEEEEeEEEEECCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE
Confidence            4568999999999642               59999999999999999999999999999999999865  4   58999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|.++.. ..+....++.+||+||++.+++ .|++||+.+....++.
T Consensus        68 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~  115 (252)
T PRK14255         68 SLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV  115 (252)
T ss_pred             EEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC
Confidence            999998842 1223456778999999999998 7999999987665554

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=172.66  Aligned_cols=107  Identities=24%  Similarity=0.392  Sum_probs=90.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--c---CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--p---t~G~i  478 (536)
                      .+.++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+  |   ++|+|
T Consensus         4 ~~~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   68 (253)
T PRK14261          4 EIILSTKNLNLWYGEK---------------HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI   68 (253)
T ss_pred             cceEEEeeeEEEECCe---------------eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence            3478999999999642               59999999999999999999999999999999999975  3   48999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|+++... .+....++.+||+||++.+++. |++||+.+..+.++.
T Consensus        69 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~  116 (253)
T PRK14261         69 LYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE  116 (253)
T ss_pred             EECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC
Confidence            9999998421 1234567789999999999985 999999987666554

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.78  E-value=1.1e-18  Score=163.21  Aligned_cols=96  Identities=24%  Similarity=0.482  Sum_probs=83.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|+++.             ..+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|.++.
T Consensus         1 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~   67 (171)
T cd03228           1 IEFKNVSFSYPGRP-------------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR   67 (171)
T ss_pred             CEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence            36789999996531             15999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHL  517 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L  517 (536)
                      . ......++.+||+||++.+++ .|++||+
T Consensus        68 ~-~~~~~~~~~i~~~~~~~~~~~-~t~~e~l   96 (171)
T cd03228          68 D-LDLESLRKNIAYVPQDPFLFS-GTIRENI   96 (171)
T ss_pred             h-cCHHHHHhhEEEEcCCchhcc-chHHHHh
Confidence            2 233456778999999998887 6999997

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=171.82  Aligned_cols=107  Identities=21%  Similarity=0.345  Sum_probs=89.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--cc---CccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PV---TGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~p---t~G~i~  479 (536)
                      ..++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.  +|   ++|+|.
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~   68 (252)
T PRK14239          4 PILQVSDLSVYYNKK---------------KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV   68 (252)
T ss_pred             ceEEEEeeEEEECCe---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence            368999999999642               5999999999999999999999999999999999985  46   589999


Q ss_pred             EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      ++|.++... .+....++.+||+||+..+++ +|++||+.+....++..
T Consensus        69 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~  116 (252)
T PRK14239         69 YNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIK  116 (252)
T ss_pred             ECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCC
Confidence            999988421 122345778999999999887 89999999876655543

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=9e-19  Score=174.34  Aligned_cols=99  Identities=17%  Similarity=0.372  Sum_probs=87.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +++++|++++|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (255)
T PRK11231          2 TLRTENLTVGYGTK---------------RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI   66 (255)
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh
Confidence            47899999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+....++.+||+||+..+++.+|++|++.+.
T Consensus        67 ~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~  100 (255)
T PRK11231         67 SM-LSSRQLARRLALLPQHHLTPEGITVRELVAYG  100 (255)
T ss_pred             HH-CCHHHHhhheEEecccCCCCCCccHHHHHHhc
Confidence            42 22345567899999999999999999999874

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.7e-18  Score=171.89  Aligned_cols=105  Identities=22%  Similarity=0.384  Sum_probs=89.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i   67 (250)
T PRK14262          3 IIEIENFSAYYGEK---------------KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYF   67 (250)
T ss_pred             eEEEEeeEEEeCCc---------------eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEE
Confidence            58999999999642               599999999999999999999999999999999999874     8999999


Q ss_pred             cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +|.++... .+....++.+||+||++.+++ +|++||+.+.....+.
T Consensus        68 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~  113 (250)
T PRK14262         68 KGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV  113 (250)
T ss_pred             CCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence            99987421 122345778999999999988 8999999887655543

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=173.50  Aligned_cols=107  Identities=19%  Similarity=0.315  Sum_probs=90.0

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC-
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-  482 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g-  482 (536)
                      .+.+.+++++|+|++.               .+++|+||++.+||+++|+|+||||||||+++|+|+.+|++|+|.++| 
T Consensus         8 ~~~i~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~   72 (257)
T PRK14246          8 EDVFNISRLYLYINDK---------------AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK   72 (257)
T ss_pred             hhheeeeeEEEecCCc---------------eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCE
Confidence            3569999999999653               599999999999999999999999999999999999999998777776 


Q ss_pred             -----EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          483 -----FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       483 -----~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                           .++.. .+....++.+||+||++.+++.+|++||+.+....++.
T Consensus        73 ~~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~  120 (257)
T PRK14246         73 VLYFGKDIFQ-IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI  120 (257)
T ss_pred             EEECCccccc-CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC
Confidence                 34321 12345678899999999999999999999987665543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.78  E-value=1e-18  Score=164.47  Aligned_cols=95  Identities=23%  Similarity=0.372  Sum_probs=82.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++..             ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~~~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (178)
T cd03247           1 LSINNVSFSYPEQE-------------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS   67 (178)
T ss_pred             CEEEEEEEEeCCCC-------------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence            36789999996531             14899999999999999999999999999999999999999999999999873


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHL  517 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L  517 (536)
                      .  .....++.+||+||++.+++ .|++||+
T Consensus        68 ~--~~~~~~~~i~~~~q~~~~~~-~tv~~~i   95 (178)
T cd03247          68 D--LEKALSSLISVLNQRPYLFD-TTLRNNL   95 (178)
T ss_pred             H--HHHHHHhhEEEEccCCeeec-ccHHHhh
Confidence            2  12356778999999998886 7999998

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.78  E-value=8.5e-19  Score=191.06  Aligned_cols=102  Identities=30%  Similarity=0.456  Sum_probs=88.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   68 (501)
T PRK10762          4 LLQLKGIDKAFPGV---------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV   68 (501)
T ss_pred             eEEEeeeEEEeCCe---------------EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            68999999999642               599999999999999999999999999999999999999999999999988


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      .........++.+||+||++.+++.+||+|++.+...
T Consensus        69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~  105 (501)
T PRK10762         69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGRE  105 (501)
T ss_pred             CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccc
Confidence            4322222345679999999999999999999987543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=9.4e-19  Score=190.97  Aligned_cols=104  Identities=26%  Similarity=0.391  Sum_probs=89.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcC
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYG  482 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g  482 (536)
                      ..++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.++|
T Consensus         4 ~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g   68 (506)
T PRK13549          4 YLLEMKNITKTFGGV---------------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG   68 (506)
T ss_pred             ceEEEeeeEEEeCCe---------------EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence            368999999999642               599999999999999999999999999999999999986  899999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      .++......+..++.+||+||++.+++.+|++||+.+....
T Consensus        69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~  109 (506)
T PRK13549         69 EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEI  109 (506)
T ss_pred             EECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence            99853221223467899999999999999999999886543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.8e-18  Score=174.95  Aligned_cols=108  Identities=19%  Similarity=0.364  Sum_probs=91.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ++.++++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        37 ~~~l~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I  101 (285)
T PRK14254         37 ETVIEARDLNVFYGDE---------------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL  101 (285)
T ss_pred             CceEEEEEEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence            4569999999999642               59999999999999999999999999999999999987     689999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .++|.++... .+....++.+||+||+..+++. |++||+.+....++.+
T Consensus       102 ~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~  150 (285)
T PRK14254        102 TFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD  150 (285)
T ss_pred             EECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc
Confidence            9999987421 1234567889999999988885 9999998876665544

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.77  E-value=5.7e-19  Score=170.94  Aligned_cols=92  Identities=22%  Similarity=0.434  Sum_probs=80.5

Q ss_pred             EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~  488 (536)
                      ++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.  
T Consensus         2 ~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--   64 (213)
T cd03235           2 VEDLTVSYGGH---------------PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE--   64 (213)
T ss_pred             cccceeEECCE---------------EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH--
Confidence            57899999642               5999999999999999999999999999999999999999999999998762  


Q ss_pred             ccHHHhhcceEEEcCCCCCCC--CCCHHHHHHHHH
Q 009374          489 VSMTNIQKSIGVCPQFNILWD--ALSGEEHLHLFA  521 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ~~~l~~--~lTv~e~L~~~~  521 (536)
                          ..++.+||+||++.+.+  .+|++||+.+..
T Consensus        65 ----~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~   95 (213)
T cd03235          65 ----KERKRIGYVPQRRSIDRDFPISVRDVVLMGL   95 (213)
T ss_pred             ----HHHhheEEeccccccccCCCCcHHHHHHhcc
Confidence                35678999999987643  389999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.2e-18  Score=171.11  Aligned_cols=105  Identities=20%  Similarity=0.407  Sum_probs=89.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i  480 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i   68 (251)
T PRK14251          4 IISAKDVHLSYGNY---------------EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF   68 (251)
T ss_pred             eEEEEeeEEEECCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence            58999999999642               59999999999999999999999999999999999987     48999999


Q ss_pred             cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +|.++.. ..+....++.+||++|++.+++ .|++||+.+.....+.
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~  114 (251)
T PRK14251         69 EGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV  114 (251)
T ss_pred             CCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC
Confidence            9998742 1223456778999999999886 7999999886555554

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.77  E-value=8.5e-19  Score=172.55  Aligned_cols=99  Identities=16%  Similarity=0.279  Sum_probs=85.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++..             ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (237)
T cd03252           1 ITFEHVRFRYKPDG-------------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA   67 (237)
T ss_pred             CEEEEEEEecCCCC-------------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence            46889999996421             25999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+....++.+||+||++.+++ .|++||+.+.
T Consensus        68 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~   99 (237)
T cd03252          68 L-ADPAWLRRQVGVVLQENVLFN-RSIRDNIALA   99 (237)
T ss_pred             h-cCHHHHhhcEEEEcCCchhcc-chHHHHhhcc
Confidence            2 234456788999999998875 6999999874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=1.8e-18  Score=172.62  Aligned_cols=104  Identities=23%  Similarity=0.418  Sum_probs=88.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~i  480 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.+
T Consensus         7 ~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~   71 (259)
T PRK14260          7 AIKVKDLSFYYNTS---------------KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDF   71 (259)
T ss_pred             eEEEEEEEEEECCe---------------EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEE
Confidence            68999999999642               599999999999999999999999999999999999885     4899999


Q ss_pred             cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +|.++.. ..+.+..++.+||+||++.+++ +|++||+.+....++
T Consensus        72 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~  116 (259)
T PRK14260         72 FGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA  116 (259)
T ss_pred             CCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc
Confidence            9998742 1223456778999999999997 899999987655443

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.1e-18  Score=173.62  Aligned_cols=103  Identities=21%  Similarity=0.281  Sum_probs=88.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        19 ~~~l~i~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i   83 (276)
T PRK14271         19 APAMAAVNLTLGFAGK---------------TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV   83 (276)
T ss_pred             CcEEEEeeEEEEECCE---------------EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence            3468999999999642               599999999999999999999999999999999999986     69999


Q ss_pred             EEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       479 ~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      .++|.++....+....++.+||+||++.+++ +|++||+.+...
T Consensus        84 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~  126 (276)
T PRK14271         84 LLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVR  126 (276)
T ss_pred             EECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHH
Confidence            9999988432223456788999999999988 899999987543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.4e-18  Score=170.87  Aligned_cols=106  Identities=21%  Similarity=0.372  Sum_probs=90.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i  480 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|+     +|+|.+
T Consensus         4 ~l~~~~l~~~~~~~---------------~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   68 (251)
T PRK14249          4 KIKIRGVNFFYHKH---------------QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL   68 (251)
T ss_pred             eEEEEEEEEEECCe---------------eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence            58899999999642               5999999999999999999999999999999999999987     699999


Q ss_pred             cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      +|.++... .+....++.+||+||++.+++. |++||+.+....++.+
T Consensus        69 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~  115 (251)
T PRK14249         69 DNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT  115 (251)
T ss_pred             CCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC
Confidence            99987421 1234567889999999999975 9999999876655543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.77  E-value=8.4e-19  Score=170.70  Aligned_cols=99  Identities=18%  Similarity=0.375  Sum_probs=86.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++++|++..             +.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   69 (221)
T cd03244           3 IEFKNVSLRYRPNL-------------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS   69 (221)
T ss_pred             EEEEEEEEecCCCC-------------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence            78999999996431             15999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+....++.+||+||++.+++ .|++||+.++
T Consensus        70 ~-~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~  101 (221)
T cd03244          70 K-IGLHDLRSRISIIPQDPVLFS-GTIRSNLDPF  101 (221)
T ss_pred             h-CCHHHHhhhEEEECCCCcccc-chHHHHhCcC
Confidence            2 234556788999999999876 5999999754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.77  E-value=1.4e-18  Score=165.28  Aligned_cols=94  Identities=26%  Similarity=0.355  Sum_probs=78.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC-cccHHHhhcceEEEcCCC--CCCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-SVSMTNIQKSIGVCPQFN--ILWDAL  511 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~-~~~~~~~~~~ig~~pQ~~--~l~~~l  511 (536)
                      .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.. ..+....++.+||+||++  .++ .+
T Consensus         6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~   84 (190)
T TIGR01166         6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AA   84 (190)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cc
Confidence            59999999999999999999999999999999999999999999999998741 122345677899999997  355 47


Q ss_pred             CHHHHHHHHHHhcCCChH
Q 009374          512 SGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       512 Tv~e~L~~~~~lkg~~~~  529 (536)
                      |++||+.+.....+.+.+
T Consensus        85 tv~~nl~~~~~~~~~~~~  102 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEA  102 (190)
T ss_pred             cHHHHHHHHHHHcCCCHH
Confidence            999999886555555443

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.77  E-value=9e-19  Score=192.25  Aligned_cols=111  Identities=23%  Similarity=0.433  Sum_probs=95.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++++              .+++|+||++++||.++|+|||||||||++++|.|+++|++|+|.++|.|
T Consensus       333 ~~I~~~~vsf~Y~~~~--------------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~  398 (529)
T TIGR02868       333 PTLELRDLSFGYPGSP--------------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS  398 (529)
T ss_pred             ceEEEEEEEEecCCCC--------------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            3599999999996531              48999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      +++ . .++.|+++||+||++.+|+. |++||+.+..  ...+.+++.+.
T Consensus       399 i~~-~-~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~--~~~~~e~i~~a  443 (529)
T TIGR02868       399 VSS-L-QDELRRRISVFAQDAHLFDT-TVRDNLRLGR--PDATDEELWAA  443 (529)
T ss_pred             hhh-H-HHHHHhheEEEccCcccccc-cHHHHHhccC--CCCCHHHHHHH
Confidence            974 4 67889999999999999987 9999998853  12344554443

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.77  E-value=8.6e-19  Score=172.13  Aligned_cols=100  Identities=22%  Similarity=0.455  Sum_probs=86.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.+             +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (234)
T cd03251           1 VEFKNVTFRYPGDG-------------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR   67 (234)
T ss_pred             CEEEEEEEEeCCCC-------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence            36889999996531             25899999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      . ......++.+||+||+..+++ .|++||+.+..
T Consensus        68 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~  100 (234)
T cd03251          68 D-YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGR  100 (234)
T ss_pred             h-CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccC
Confidence            2 234456778999999999886 69999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.77  E-value=6.6e-19  Score=158.42  Aligned_cols=110  Identities=20%  Similarity=0.373  Sum_probs=96.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|++++++|.-+...           .++.++++++|.|++||-++|+||+|||||||+-+++|+..|++|+|.+.|+++
T Consensus         6 ii~~~~l~ktvg~~~-----------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L   74 (228)
T COG4181           6 IIEVHHLSKTVGQGE-----------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPL   74 (228)
T ss_pred             eeehhhhhhhhcCCC-----------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcch
Confidence            688999999987642           356899999999999999999999999999999999999999999999999988


Q ss_pred             CCccc--HHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          486 RSSVS--MTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       486 ~~~~~--~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      ....+  +...| +++|+++|...|.|+||+.||+.+.+.++|-
T Consensus        75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge  118 (228)
T COG4181          75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE  118 (228)
T ss_pred             hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC
Confidence            54322  23333 6899999999999999999999999999993

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.77  E-value=1e-18  Score=171.09  Aligned_cols=100  Identities=26%  Similarity=0.390  Sum_probs=87.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.              ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (229)
T cd03254           2 EIEFENVNFSYDEK--------------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI   67 (229)
T ss_pred             eEEEEEEEEecCCC--------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence            37899999999642              1499999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .. .+....++.+||+||++.+++. |++||+.++.
T Consensus        68 ~~-~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~  101 (229)
T cd03254          68 RD-ISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGR  101 (229)
T ss_pred             HH-cCHHHHhhhEEEecCCchhhhh-HHHHHHhccC
Confidence            42 2344567789999999998886 9999998753

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.77  E-value=1.9e-18  Score=167.38  Aligned_cols=94  Identities=19%  Similarity=0.303  Sum_probs=83.0

Q ss_pred             EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (536)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~  487 (536)
                      +++|++|.|++                 .++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus         2 ~~~~l~~~~~~-----------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~   64 (213)
T TIGR01277         2 ALDKVRYEYEH-----------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG   64 (213)
T ss_pred             eEEeeeEEeCC-----------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence            67899999952                 4579999999999999999999999999999999999999999999998842


Q ss_pred             cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          488 SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       488 ~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                         ....++.+||+||++.+++.+|++||+.+..
T Consensus        65 ---~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~   95 (213)
T TIGR01277        65 ---LAPYQRPVSMLFQENNLFAHLTVRQNIGLGL   95 (213)
T ss_pred             ---CChhccceEEEeccCccCCCCcHHHHHHhHh
Confidence               1235678999999999999999999998643

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.1e-18  Score=173.28  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=89.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ++.++++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        37 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I  101 (286)
T PRK14275         37 KPHVVAKNFSIYYGEF---------------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL  101 (286)
T ss_pred             ceEEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEE
Confidence            4578999999999642               59999999999999999999999999999999999864     499999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .++|.++... .+....|+.+||+||++.+++. |++||+.+....++.
T Consensus       102 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~  149 (286)
T PRK14275        102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI  149 (286)
T ss_pred             EECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC
Confidence            9999987421 1223467789999999998875 999999987665554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.77  E-value=1.6e-18  Score=189.18  Aligned_cols=101  Identities=28%  Similarity=0.393  Sum_probs=88.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        10 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   74 (510)
T PRK15439         10 PLLCARSISKQYSGV---------------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP   74 (510)
T ss_pred             ceEEEEeEEEEeCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence            469999999999642               59999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +......+..++.+||+||++.+++.+||+|++.+.
T Consensus        75 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  110 (510)
T PRK15439         75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFG  110 (510)
T ss_pred             CCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcc
Confidence            853221222345799999999999999999999875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.77  E-value=1.9e-18  Score=168.81  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=89.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc---cCccEEEEcCE
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDALIYGF  483 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i~i~g~  483 (536)
                      +.++|++++|++.+           ..+.+++|+||++++||+++|+||||||||||+++|+|+++   |++|+|.++|.
T Consensus         4 ~~~~~~~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~   72 (226)
T cd03234           4 LPWWDVGLKAKNWN-----------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ   72 (226)
T ss_pred             ceeecceeeeecCc-----------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCE
Confidence            56889999996531           12369999999999999999999999999999999999999   99999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      ++.    ....++.+||+||++.+++.+|++||+.+.+...
T Consensus        73 ~~~----~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~  109 (226)
T cd03234          73 PRK----PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR  109 (226)
T ss_pred             ECC----hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence            873    2356788999999999999999999999866544

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.76  E-value=2.1e-18  Score=172.40  Aligned_cols=100  Identities=25%  Similarity=0.377  Sum_probs=87.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcC
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYG  482 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g  482 (536)
                      .++++||++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|+   +|+|.++|
T Consensus         4 ~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g   68 (262)
T PRK09984          4 IIRVEKLAKTFNQH---------------QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG   68 (262)
T ss_pred             EEEEeeEEEEeCCe---------------EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECC
Confidence            68999999999642               5999999999999999999999999999999999999886   49999999


Q ss_pred             EecCCc----ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          483 FSIRSS----VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       483 ~~i~~~----~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .++...    .+....++.+||+||++.+++.+|++||+.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~  110 (262)
T PRK09984         69 RTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG  110 (262)
T ss_pred             EecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence            987421    12345577899999999999999999999764

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=3.3e-18  Score=170.92  Aligned_cols=105  Identities=18%  Similarity=0.403  Sum_probs=90.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-----ccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-----~G~i~i  480 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|+     +|+|.+
T Consensus         7 ~l~~~nl~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~   71 (261)
T PRK14258          7 AIKVNNLSFYYDTQ---------------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEF   71 (261)
T ss_pred             eEEEeeEEEEeCCe---------------eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEE
Confidence            68999999999642               5999999999999999999999999999999999999986     899999


Q ss_pred             cCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          481 YGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       481 ~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +|.++.. ..+....++.+||+||+..+++ +|++||+.+.....+.
T Consensus        72 ~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~  117 (261)
T PRK14258         72 FNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW  117 (261)
T ss_pred             CCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC
Confidence            9998731 1223456788999999999988 8999999887655554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.1e-18  Score=187.94  Aligned_cols=102  Identities=27%  Similarity=0.379  Sum_probs=89.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         3 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~   67 (501)
T PRK11288          3 PYLSFDGIGKTFPGV---------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE   67 (501)
T ss_pred             ceEEEeeeEEEECCE---------------EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence            368999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +......+..++.+||+||++.+++.+|++||+.+..
T Consensus        68 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~  104 (501)
T PRK11288         68 MRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQ  104 (501)
T ss_pred             CCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcc
Confidence            8432223445778999999999999999999998753

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=3.3e-18  Score=169.73  Aligned_cols=106  Identities=24%  Similarity=0.385  Sum_probs=88.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc---ccc--CccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI---TPV--TGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~---~~p--t~G~i~  479 (536)
                      +.++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+   .+|  ++|+|.
T Consensus         2 ~~l~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~   66 (250)
T PRK14245          2 VKIDARDVNFWYGDF---------------HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR   66 (250)
T ss_pred             cEEEEEEEEEEECCE---------------eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEE
Confidence            368899999999642               599999999999999999999999999999999997   454  589999


Q ss_pred             EcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          480 IYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       480 i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      ++|.++... .+....++.+||+||++.+++ .|++||+.+....++.
T Consensus        67 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~  113 (250)
T PRK14245         67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV  113 (250)
T ss_pred             ECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence            999988421 123456788999999999887 6999999886655554

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=3.9e-18  Score=170.78  Aligned_cols=108  Identities=19%  Similarity=0.305  Sum_probs=90.1

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      ...++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        14 ~~~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i   78 (265)
T PRK14252         14 QQKSEVNKLNFYYGGY---------------QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI   78 (265)
T ss_pred             CceEEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE
Confidence            3468999999999642               599999999999999999999999999999999999875     79999


Q ss_pred             EEcCEecCC---cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          479 LIYGFSIRS---SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       479 ~i~g~~i~~---~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .++|.++..   ..+....++.+||+||++.+++. |++||+.+.....+.+
T Consensus        79 ~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~  129 (265)
T PRK14252         79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK  129 (265)
T ss_pred             EEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC
Confidence            999987631   11234567789999999999986 9999998765555543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.76  E-value=2.2e-18  Score=167.61  Aligned_cols=99  Identities=23%  Similarity=0.426  Sum_probs=85.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++..             +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   69 (220)
T cd03245           3 IEFRNVSFSYPNQE-------------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR   69 (220)
T ss_pred             EEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence            78999999996421             25999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+....++.+||+||++.+++ .|+.||+.+.
T Consensus        70 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~  101 (220)
T cd03245          70 Q-LDPADLRRNIGYVPQDVTLFY-GTLRDNITLG  101 (220)
T ss_pred             H-CCHHHHHhhEEEeCCCCcccc-chHHHHhhcC
Confidence            2 123345678999999998887 6999999764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.76  E-value=1.6e-18  Score=195.82  Aligned_cols=112  Identities=20%  Similarity=0.297  Sum_probs=96.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++++|++..             ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.+||.|
T Consensus       450 ~~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  516 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDG-------------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD  516 (686)
T ss_pred             ceEEEEEEEEEcCCCC-------------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence            3699999999996431             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++. -+.+..|+++|||||++.+|+. |++||+.+...   .+.+++.+.
T Consensus       517 i~~-~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i~~a  561 (686)
T TIGR03797       517 LAG-LDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP---LTLDEAWEA  561 (686)
T ss_pred             cCc-CCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC---CCHHHHHHH
Confidence            963 4677899999999999999986 99999988632   344554443

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.76  E-value=3.6e-18  Score=163.14  Aligned_cols=98  Identities=15%  Similarity=0.221  Sum_probs=84.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|+|+++               .+++ +||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (195)
T PRK13541          2 LSLHQLQFNIEQK---------------NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN   65 (195)
T ss_pred             eEEEEeeEEECCc---------------EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence            6789999999532               3555 99999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .   ..  ++.++|++|...+++.+|++||+.+.....+
T Consensus        66 ~---~~--~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~   99 (195)
T PRK13541         66 N---IA--KPYCTYIGHNLGLKLEMTVFENLKFWSEIYN   99 (195)
T ss_pred             h---hh--hhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence            2   11  3569999999888899999999988765543

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.76  E-value=2.6e-18  Score=172.47  Aligned_cols=98  Identities=24%  Similarity=0.263  Sum_probs=85.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC--------ccEE
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--------GGDA  478 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt--------~G~i  478 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|+        +|+|
T Consensus         2 l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i   66 (272)
T PRK13547          2 LTADHLHVARRHR---------------AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV   66 (272)
T ss_pred             eEEEEEEEEECCE---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEE
Confidence            6899999999642               5999999999999999999999999999999999999998        9999


Q ss_pred             EEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          479 LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       479 ~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .++|.++.. .+..+.++.+||+||++.++..+|++||+.+.
T Consensus        67 ~~~g~~~~~-~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~  107 (272)
T PRK13547         67 TLNGEPLAA-IDAPRLARLRAVLPQAAQPAFAFSAREIVLLG  107 (272)
T ss_pred             EECCEEccc-CCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence            999998742 23345566799999998766679999999874

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1e-18  Score=188.16  Aligned_cols=115  Identities=22%  Similarity=0.359  Sum_probs=102.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+.+|+++.|+.+            +++.+++|+||+|++||++||+||||+||||..++|-.++.|++|+|.+||.|
T Consensus       464 G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~  531 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP  531 (716)
T ss_pred             ceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence            469999999999875            35679999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      |++ -+...+|++||++-|++.||.. |++||+.+...  ..+.+++++.+
T Consensus       532 i~~-~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AA  578 (716)
T KOG0058|consen  532 ISD-INHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAA  578 (716)
T ss_pred             hhh-cCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHH
Confidence            974 5677889999999999999986 99999988665  56677776554

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.76  E-value=1.8e-18  Score=170.34  Aligned_cols=100  Identities=25%  Similarity=0.442  Sum_probs=85.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|+++.            .+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~i~~l~~~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   68 (238)
T cd03249           1 IEFKNVSFRYPSRP------------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR   68 (238)
T ss_pred             CeEEEEEEecCCCC------------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence            36889999996421            125999999999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+....++.+||+||++.+++ .|++|++.+.
T Consensus        69 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~  100 (238)
T cd03249          69 D-LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYG  100 (238)
T ss_pred             h-cCHHHHHhhEEEECCchhhhh-hhHHHHhhcc
Confidence            2 223445678999999998886 6999999874

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=4.8e-18  Score=170.00  Aligned_cols=106  Identities=23%  Similarity=0.420  Sum_probs=89.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~  479 (536)
                      +.++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|+
T Consensus         9 ~~l~i~~v~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~   73 (264)
T PRK14243          9 TVLRTENLNVYYGSF---------------LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT   73 (264)
T ss_pred             eEEEEeeeEEEECCE---------------EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence            368999999999642               59999999999999999999999999999999999976     4899999


Q ss_pred             EcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          480 IYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       480 i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      ++|.++.. ..+....++.+||+||+..+++ .|++||+.+....++.
T Consensus        74 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~  120 (264)
T PRK14243         74 FHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGY  120 (264)
T ss_pred             ECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCc
Confidence            99998731 1123456778999999999888 4999999886654443

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=6.4e-18  Score=173.85  Aligned_cols=114  Identities=13%  Similarity=0.215  Sum_probs=90.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc----cCccEEEEc
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY  481 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~----pt~G~i~i~  481 (536)
                      .++++||++.|++..           +.+.||+|+||+|++||++||+|+||||||||+++|+|+++    |++|+|.++
T Consensus         3 ~L~v~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~   71 (326)
T PRK11022          3 LLNVDKLSVHFGDES-----------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFN   71 (326)
T ss_pred             eEEEeCeEEEECCCC-----------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEEC
Confidence            479999999996531           12469999999999999999999999999999999999997    489999999


Q ss_pred             CEecCCcc--cHHHh-hcceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374          482 GFSIRSSV--SMTNI-QKSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDS  530 (536)
Q Consensus       482 g~~i~~~~--~~~~~-~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~  530 (536)
                      |.++....  +..+. ++.+||+||++  .+.+.+|+.+++....+.. |.+.++
T Consensus        72 G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~  126 (326)
T PRK11022         72 GQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKT  126 (326)
T ss_pred             CEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHH
Confidence            99985322  12222 24799999997  5899999999987655433 444443

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.75  E-value=2.1e-18  Score=168.51  Aligned_cols=103  Identities=17%  Similarity=0.324  Sum_probs=88.1

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++++++.|+++.            .+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus         9 ~~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~   76 (226)
T cd03248           9 KGIVKFQNVTFAYPTRP------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK   76 (226)
T ss_pred             CceEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence            45799999999997531            125999999999999999999999999999999999999999999999998


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ++.. .+....++.+|||||++.+++ .|++||+.+.
T Consensus        77 ~~~~-~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~  111 (226)
T cd03248          77 PISQ-YEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYG  111 (226)
T ss_pred             chHH-cCHHHHHhhEEEEecccHHHh-hhHHHHhccc
Confidence            8742 233456778999999998886 5999999764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.75  E-value=3.1e-18  Score=187.14  Aligned_cols=101  Identities=29%  Similarity=0.352  Sum_probs=88.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus         4 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~   68 (510)
T PRK09700          4 PYISMAGIGKSFGPV---------------HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN   68 (510)
T ss_pred             ceEEEeeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE
Confidence            368999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.........++.+||+||++.+++.+||+||+.+.
T Consensus        69 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~  104 (510)
T PRK09700         69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG  104 (510)
T ss_pred             CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence            853222222456799999999999999999999764

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=5.9e-18  Score=169.00  Aligned_cols=106  Identities=17%  Similarity=0.259  Sum_probs=89.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      ...+.++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|     ++|+|
T Consensus         6 ~~~~~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i   70 (261)
T PRK14263          6 PIVMDCKLDKIFYGNF---------------MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV   70 (261)
T ss_pred             CceEEEEeEEEEeCCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE
Confidence            4578999999999642               599999999999999999999999999999999999986     79999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .++|+++... .+....++.+||+||++.++ .+|++||+.+.....+
T Consensus        71 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~  117 (261)
T PRK14263         71 HFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR  117 (261)
T ss_pred             EECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC
Confidence            9999987421 12235677899999999988 5999999988765544

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.75  E-value=3.4e-18  Score=171.55  Aligned_cols=99  Identities=25%  Similarity=0.411  Sum_probs=86.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++..             ..+++|+||+|++||++||+|+||||||||+++|+|+++ ++|+|+++|.++
T Consensus         2 ~i~~~nls~~~~~~~-------------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i   67 (275)
T cd03289           2 QMTVKDLTAKYTEGG-------------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSW   67 (275)
T ss_pred             eEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEh
Confidence            378999999996421             159999999999999999999999999999999999998 789999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+....|+.+|||||++.+|+. |++||+..+
T Consensus        68 ~~-~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~  100 (275)
T cd03289          68 NS-VPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPY  100 (275)
T ss_pred             hh-CCHHHHhhhEEEECCCcccchh-hHHHHhhhc
Confidence            52 3455678899999999999975 999999754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.75  E-value=4e-19  Score=160.93  Aligned_cols=116  Identities=18%  Similarity=0.352  Sum_probs=100.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ++++++||.|+|+..               .+|+++||+.++|+++.++|.+||||||+++||.-+..|++|+|.++|..
T Consensus         5 ~~l~v~dlHK~~G~~---------------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~gee   69 (256)
T COG4598           5 NALEVEDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEE   69 (256)
T ss_pred             cceehhHHHhhcccc---------------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeE
Confidence            478999999999764               69999999999999999999999999999999999999999999999998


Q ss_pred             cCC------------cccHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HHHhcCCChHhHhhhh
Q 009374          485 IRS------------SVSMTNIQKSIGVCPQFNILWDALSGEEHLHL-FANIKGLPLDSIKSVC  535 (536)
Q Consensus       485 i~~------------~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~-~~~lkg~~~~~~~~~v  535 (536)
                      ++.            ..+.+.+|.++|+++|+.+||.+||+.||+.- .-..-|+++.+..+.+
T Consensus        70 i~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A  133 (256)
T COG4598          70 IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA  133 (256)
T ss_pred             EEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH
Confidence            741            22345678899999999999999999999754 5567788887765544

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.75  E-value=4.5e-18  Score=176.86  Aligned_cols=96  Identities=17%  Similarity=0.289  Sum_probs=82.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +++ ||+|.|++.                .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~-~l~k~~~~~----------------~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~   63 (352)
T PRK11144          2 LEL-NFKQQLGDL----------------CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF   63 (352)
T ss_pred             eEE-EEEEEeCCE----------------EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            556 899999641                23 899999999999999999999999999999999999999999999874


Q ss_pred             Ccc---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSV---SMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ...   .....++.+||+||+..+++++|++||+.+.
T Consensus        64 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~  100 (352)
T PRK11144         64 DAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG  100 (352)
T ss_pred             ccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence            211   1234567899999999999999999999874

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.75  E-value=1.9e-18  Score=192.08  Aligned_cols=103  Identities=17%  Similarity=0.331  Sum_probs=93.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++++|+...             ..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||+
T Consensus       469 ~g~I~~~nvsf~y~~~~-------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~  535 (709)
T COG2274         469 QGEIEFENVSFRYGPDD-------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV  535 (709)
T ss_pred             CceEEEEEEEEEeCCCC-------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence            34699999999997642             15999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      |+. .-+.+..|+++||+||++.||.. |++||+.+..
T Consensus       536 dl~-~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~  571 (709)
T COG2274         536 DLN-DIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN  571 (709)
T ss_pred             eHH-hcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC
Confidence            996 35788999999999999999987 9999998753

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.75  E-value=3.5e-18  Score=167.99  Aligned_cols=98  Identities=23%  Similarity=0.422  Sum_probs=85.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~--------------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~   66 (236)
T cd03253           1 IEFENVTFAYDPG--------------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR   66 (236)
T ss_pred             CEEEEEEEEeCCC--------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence            3678999999642              14999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+....++.+||+||+..+++ .|++||+.+.
T Consensus        67 ~-~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~   98 (236)
T cd03253          67 E-VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYG   98 (236)
T ss_pred             h-CCHHHHHhhEEEECCCChhhc-chHHHHHhhc
Confidence            2 234556778999999999886 6999999775

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=8e-18  Score=167.01  Aligned_cols=104  Identities=24%  Similarity=0.396  Sum_probs=87.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i  480 (536)
                      .++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.+     |++|+|.+
T Consensus         3 ~l~~~~v~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   67 (250)
T PRK14266          3 RIEVENLNTYFDDA---------------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL   67 (250)
T ss_pred             EEEEEeEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEE
Confidence            57899999999642               59999999999999999999999999999999999864     48999999


Q ss_pred             cCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          481 YGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       481 ~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +|.++... .+....++.+|||||++.+++. |++||+.+.....+
T Consensus        68 ~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~  112 (250)
T PRK14266         68 DGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG  112 (250)
T ss_pred             CCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC
Confidence            99987421 1344667889999999999985 99999987654444

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.75  E-value=9.7e-18  Score=172.69  Aligned_cols=116  Identities=20%  Similarity=0.292  Sum_probs=93.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALI  480 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i  480 (536)
                      ...++++||+|.|+...           +.+.||+|+||+|++||++||+|+||||||||+++|+|+++|+   +|+|.+
T Consensus        10 ~~~L~i~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~   78 (330)
T PRK09473         10 DALLDVKDLRVTFSTPD-----------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF   78 (330)
T ss_pred             CceEEEeCeEEEEecCC-----------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence            34689999999996421           1246999999999999999999999999999999999999995   999999


Q ss_pred             cCEecCCcc--cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHh
Q 009374          481 YGFSIRSSV--SMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDS  530 (536)
Q Consensus       481 ~g~~i~~~~--~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~  530 (536)
                      +|.++....  +.++.| +.+||+||+.  .+.+.+|+.+++......+ +.+.++
T Consensus        79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~  134 (330)
T PRK09473         79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE  134 (330)
T ss_pred             CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHH
Confidence            999985321  223344 4799999997  7899999999997765443 455444

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=7.2e-19  Score=169.21  Aligned_cols=127  Identities=28%  Similarity=0.365  Sum_probs=99.0

Q ss_pred             eEEEeeeEEEcCCCCc-Ccccc-----ccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374          406 AVQIRGLVKTFPGTRK-IGCCC-----KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~-~~~~~-----~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~  479 (536)
                      ++.++||+|.|.-..+ .|...     ..+|++...||+|+||+|++||++|++|+||||||||++||+|++.|++|.|.
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~   82 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR   82 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence            5677888888864211 01111     11344456799999999999999999999999999999999999999999999


Q ss_pred             EcCEecCCcccHHHhhcceEEE-cCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          480 IYGFSIRSSVSMTNIQKSIGVC-PQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       480 i~g~~i~~~~~~~~~~~~ig~~-pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++|++..  .+.++.-+++|++ .|.-.||=++.+.|.+..-..++.+|.++-++.
T Consensus        83 V~G~~Pf--~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r  136 (325)
T COG4586          83 VNGKDPF--RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAER  136 (325)
T ss_pred             ecCcCcc--hhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHH
Confidence            9999874  2445555667765 467788888889999999999999987776554

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.75  E-value=4.6e-18  Score=163.09  Aligned_cols=97  Identities=26%  Similarity=0.389  Sum_probs=83.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcCEe
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGFS  484 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g~~  484 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+  .+|++|+|.++|.+
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~   65 (200)
T cd03217           1 LEIKDLHVSVGGK---------------EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED   65 (200)
T ss_pred             CeEEEEEEEeCCE---------------EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEE
Confidence            3688999999642               599999999999999999999999999999999999  57999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH  518 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~  518 (536)
                      +......+..++.+||+||+..+++.+|+++++.
T Consensus        66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~   99 (200)
T cd03217          66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR   99 (200)
T ss_pred             CCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence            8532222223556999999999999999999883

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.74  E-value=6.5e-18  Score=184.18  Aligned_cols=101  Identities=29%  Similarity=0.405  Sum_probs=87.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcCEe
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFS  484 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g~~  484 (536)
                      ++++|++|.|++.               .+++|+||++++||++||+|+||||||||+++|+|+.+|  ++|+|.++|.+
T Consensus         2 l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~   66 (500)
T TIGR02633         2 LEMKGIVKTFGGV---------------KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP   66 (500)
T ss_pred             EEEEeEEEEeCCe---------------EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence            6899999999642               599999999999999999999999999999999999987  79999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      +......+..++.+||+||++.+++.+|++|++.+...
T Consensus        67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~  104 (500)
T TIGR02633        67 LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNE  104 (500)
T ss_pred             CCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhcc
Confidence            85322222345679999999999999999999987544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.74  E-value=4.7e-18  Score=186.60  Aligned_cols=101  Identities=25%  Similarity=0.466  Sum_probs=91.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++++|++.+             +++++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus       320 ~i~~~~v~f~y~~~~-------------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i  386 (529)
T TIGR02857       320 SLEFSGLSVAYPGRR-------------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL  386 (529)
T ss_pred             eEEEEEEEEECCCCC-------------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh
Confidence            699999999997531             2589999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .+ .+.++.|+++|||||++.+|+. |++||+.+..
T Consensus       387 ~~-~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~  420 (529)
T TIGR02857       387 AD-ADADSWRDQIAWVPQHPFLFAG-TIAENIRLAR  420 (529)
T ss_pred             hh-CCHHHHHhheEEEcCCCcccCc-CHHHHHhccC
Confidence            63 4567789999999999999975 9999998753

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=5.6e-18  Score=166.21  Aligned_cols=94  Identities=17%  Similarity=0.309  Sum_probs=82.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .  .|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~---------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   64 (232)
T PRK10771          2 LKLTDITWLYHHL---------------P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT   64 (232)
T ss_pred             eEEEEEEEEECCc---------------c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence            6899999999631               1  2899999999999999999999999999999999999999999999874


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ..   ...++.+||+||++.+++.+|+.||+.+.
T Consensus        65 ~~---~~~~~~i~~~~q~~~~~~~~tv~e~l~~~   95 (232)
T PRK10771         65 TT---PPSRRPVSMLFQENNLFSHLTVAQNIGLG   95 (232)
T ss_pred             cC---ChhhccEEEEecccccccCCcHHHHHhcc
Confidence            21   12356799999999999999999999764

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.74  E-value=3.6e-18  Score=189.03  Aligned_cols=112  Identities=26%  Similarity=0.360  Sum_probs=95.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|+++|.+
T Consensus       337 ~~i~~~~v~f~y~~~~-------------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~  403 (574)
T PRK11160        337 VSLTLNNVSFTYPDQP-------------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP  403 (574)
T ss_pred             CeEEEEEEEEECCCCC-------------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            4699999999997531             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      +++ .+.+..|+.+||+||++.+|+. |++||+.+...  ..+.+++.+
T Consensus       404 i~~-~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~  448 (574)
T PRK11160        404 IAD-YSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP--NASDEALIE  448 (574)
T ss_pred             hhh-CCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--ccCHHHHHH
Confidence            863 4567889999999999999986 99999988532  334455443

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.6e-17  Score=170.93  Aligned_cols=110  Identities=20%  Similarity=0.341  Sum_probs=91.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      ...++++|+++.|.+..             ..+++|+||+|++||++||+|+||||||||+++|.|+.+     |++|+|
T Consensus        78 ~~~i~~~nls~~y~~~~-------------~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I  144 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRT-------------KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI  144 (329)
T ss_pred             CceEEEEeeEEEecCCC-------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            45799999999996421             259999999999999999999999999999999999986     579999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .++|.++... .+...+|+.+|||||++.+++ .|++||+.+.....+..
T Consensus       145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~  193 (329)
T PRK14257        145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIN  193 (329)
T ss_pred             EECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCC
Confidence            9999998521 123456889999999999885 79999999765554544

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.2e-17  Score=168.07  Aligned_cols=106  Identities=18%  Similarity=0.380  Sum_probs=88.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      ...++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|     ++|+|
T Consensus        18 ~~~l~~~nl~~~~~~~---------------~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (274)
T PRK14265         18 HSVFEVEGVKVFYGGF---------------LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL   82 (274)
T ss_pred             CceEEEeeEEEEeCCe---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence            3479999999999642               599999999999999999999999999999999999863     68999


Q ss_pred             EEcCEecCC-cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          479 LIYGFSIRS-SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       479 ~i~g~~i~~-~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .++|.++.. .......++.+||+||+..+++. |+.||+.+....++
T Consensus        83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~  129 (274)
T PRK14265         83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG  129 (274)
T ss_pred             EECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC
Confidence            999998742 11233567889999999998875 99999988655444

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=8.6e-18  Score=166.90  Aligned_cols=104  Identities=18%  Similarity=0.331  Sum_probs=86.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEEEEc
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDALIY  481 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i~  481 (536)
                      -+++|+++.|++.               .+++|+||++.+||+++|+|+||||||||+++|+|+.+     |++|+|.++
T Consensus         6 ~~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~   70 (251)
T PRK14244          6 ASVKNLNLWYGSK---------------QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID   70 (251)
T ss_pred             EEeeeEEEEECCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEEC
Confidence            4688999999642               59999999999999999999999999999999999986     479999999


Q ss_pred             CEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          482 GFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       482 g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      |.++... ......++.+||+||++.+++. |++||+.+....++.
T Consensus        71 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~  115 (251)
T PRK14244         71 GIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL  115 (251)
T ss_pred             CEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC
Confidence            9987421 1223467789999999999886 999999876555543

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.74  E-value=1.3e-17  Score=166.32  Aligned_cols=101  Identities=16%  Similarity=0.227  Sum_probs=84.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (258)
T PRK11701          5 PLLSVRGLTKLYGPR---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD   69 (258)
T ss_pred             ceEEEeeeEEEcCCc---------------eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence            368999999999642               59999999999999999999999999999999999999999999999987


Q ss_pred             -----cCCcccH--HH-hhcceEEEcCCC--CCCCCCCHHHHHHHH
Q 009374          485 -----IRSSVSM--TN-IQKSIGVCPQFN--ILWDALSGEEHLHLF  520 (536)
Q Consensus       485 -----i~~~~~~--~~-~~~~ig~~pQ~~--~l~~~lTv~e~L~~~  520 (536)
                           +......  .. .++.+||+||+.  .+++.+|+.||+.+.
T Consensus        70 ~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~  115 (258)
T PRK11701         70 GQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGER  115 (258)
T ss_pred             ccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHH
Confidence                 6321111  11 356799999997  477889999998754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.74  E-value=3.5e-18  Score=193.85  Aligned_cols=112  Identities=21%  Similarity=0.325  Sum_probs=96.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++.              ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|+++|.|
T Consensus       472 ~~I~~~~vsf~y~~~--------------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~  537 (708)
T TIGR01193       472 GDIVINDVSYSYGYG--------------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS  537 (708)
T ss_pred             CcEEEEEEEEEcCCC--------------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence            359999999999642              158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ++. -+.+..|+++|||||++.||+. |++|||.+..+ ...+.+++.+
T Consensus       538 i~~-~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~  583 (708)
T TIGR01193       538 LKD-IDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWA  583 (708)
T ss_pred             HHH-cCHHHHHHheEEEecCceehhH-HHHHHHhccCC-CCCCHHHHHH
Confidence            863 4667889999999999999987 99999998632 2344455443

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=4.8e-18  Score=177.36  Aligned_cols=100  Identities=26%  Similarity=0.430  Sum_probs=91.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..|+++|++..|+.++              ++|+++||+|++||-+|++|+|||||||.+|+|-++.. .+|+|+|||.
T Consensus       349 ~~~I~F~dV~f~y~~k~--------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~  413 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGPKR--------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQ  413 (591)
T ss_pred             CCcEEEEeeEEEeCCCC--------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCe
Confidence            34699999999998642              59999999999999999999999999999999999999 8999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      |++. .+.+..|+.|||+||+..||++ |+.+|+.+.
T Consensus       414 dik~-~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YG  448 (591)
T KOG0057|consen  414 DIKE-VSLESLRQSIGVVPQDSVLFND-TILYNIKYG  448 (591)
T ss_pred             eHhh-hChHHhhhheeEeCCcccccch-hHHHHhhcC
Confidence            9973 5678899999999999999998 999999764

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.74  E-value=8.1e-18  Score=175.15  Aligned_cols=95  Identities=21%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             eeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc-
Q 009374          411 GLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV-  489 (536)
Q Consensus       411 ~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~-  489 (536)
                      ||+|.|++.                .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... 
T Consensus         4 ~l~~~~~~~----------------~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~   66 (354)
T TIGR02142         4 RFSKRLGDF----------------SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK   66 (354)
T ss_pred             EEEEEECCE----------------EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc
Confidence            789999642                34 899999999999999999999999999999999999999999999884211 


Q ss_pred             --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          490 --SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       490 --~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                        .....++.+||+||++.+++.+|++||+.+...
T Consensus        67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~  101 (354)
T TIGR02142        67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK  101 (354)
T ss_pred             ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence              123456789999999999999999999987644

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3.1e-18  Score=159.36  Aligned_cols=105  Identities=21%  Similarity=0.359  Sum_probs=90.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +|+.+|++.+-.++               ..++++||++++||+.+|+||||||||||++.|+|...|++|++.++|.++
T Consensus         1 mi~a~nls~~~~Gr---------------~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l   65 (259)
T COG4559           1 MIRAENLSYSLAGR---------------RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL   65 (259)
T ss_pred             CeeeeeeEEEeecc---------------eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcCh
Confidence            36788988887664               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      .+ ....+..++-++.||+..|--..||+|-+++...-.+.
T Consensus        66 ~~-~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~  105 (259)
T COG4559          66 NS-WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS  105 (259)
T ss_pred             hh-CCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence            63 34455556789999999888889999999998765533

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.74  E-value=8.4e-18  Score=167.56  Aligned_cols=101  Identities=18%  Similarity=0.259  Sum_probs=87.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++++++.|++..             ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.
T Consensus        17 ~~~i~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~   83 (257)
T cd03288          17 GGEIKIHDLCVRYENNL-------------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI   83 (257)
T ss_pred             CceEEEEEEEEEeCCCC-------------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence            45699999999996421             25999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ++.. .+..+.++.+|||||++.+++. |++||+..
T Consensus        84 ~i~~-~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~  117 (257)
T cd03288          84 DISK-LPLHTLRSRLSIILQDPILFSG-SIRFNLDP  117 (257)
T ss_pred             Ehhh-CCHHHHhhhEEEECCCCccccc-HHHHhcCc
Confidence            8852 2345667889999999998874 99999854

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.74  E-value=1.1e-17  Score=162.18  Aligned_cols=95  Identities=23%  Similarity=0.398  Sum_probs=81.4

Q ss_pred             eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc
Q 009374          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV  489 (536)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~  489 (536)
                      -+|+|+|++.               .+  |+||++++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus         4 ~~l~~~~~~~---------------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~   65 (214)
T cd03297           4 VDIEKRLPDF---------------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR   65 (214)
T ss_pred             eeeeEecCCe---------------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence            3899999652               24  99999999 999999999999999999999999999999999999874211


Q ss_pred             ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          490 ---SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       490 ---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                         +....++.+||+||+..+++++|++||+.+...
T Consensus        66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~  101 (214)
T cd03297          66 KKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK  101 (214)
T ss_pred             chhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence               223457789999999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.74  E-value=4.9e-18  Score=192.74  Aligned_cols=112  Identities=18%  Similarity=0.304  Sum_probs=95.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++++|++..             ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.|
T Consensus       476 ~~I~~~~vsf~y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  542 (710)
T TIGR03796       476 GYVELRNITFGYSPLE-------------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP  542 (710)
T ss_pred             CeEEEEEEEEecCCCC-------------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence            3699999999997531             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ++. -+.+++|+++|||||++.+|+. |++|||.++.  ...+.+++.+
T Consensus       543 i~~-~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~--~~~~~~~i~~  587 (710)
T TIGR03796       543 REE-IPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD--PTIPDADLVR  587 (710)
T ss_pred             HHH-CCHHHHHhheeEEecCChhhhc-cHHHHhhCCC--CCCCHHHHHH
Confidence            863 4567889999999999999975 9999998752  1234454443

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.1e-17  Score=186.42  Aligned_cols=118  Identities=15%  Similarity=0.229  Sum_probs=94.0

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.++++||++.|++..           +...+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.
T Consensus        10 ~~~l~v~~l~~~y~~~~-----------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~   78 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQ-----------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM   78 (623)
T ss_pred             CceEEEeceEEEecCCC-----------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCE
Confidence            45799999999996421           1236999999999999999999999999999999999999999999999987


Q ss_pred             ecCC----------cc--cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCChHhHh
Q 009374          484 SIRS----------SV--SMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLFANIK-GLPLDSIK  532 (536)
Q Consensus       484 ~i~~----------~~--~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk-g~~~~~~~  532 (536)
                      ++..          ..  +....| +.+||++|++  .+++.+||+||+.+..+++ |++.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~  143 (623)
T PRK10261         79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM  143 (623)
T ss_pred             EeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH
Confidence            5421          01  112333 4799999997  7889999999999876653 66655443

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.74  E-value=1.7e-17  Score=166.44  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=87.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++....|      ++.++.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 ~l~~~nl~~~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~   76 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSG------KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL   76 (268)
T ss_pred             eEEEeceEEEecCCcccc------ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence            588999999996310000      00013699999999999999999999999999999999999999999999999987


Q ss_pred             CCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHH
Q 009374          486 RSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~  521 (536)
                      ....  +....++.+||+||++  .+++.+|+.|++.+..
T Consensus        77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~  116 (268)
T PRK10419         77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL  116 (268)
T ss_pred             cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH
Confidence            4321  1234577899999997  4778899999987643

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.5e-18  Score=157.32  Aligned_cols=97  Identities=22%  Similarity=0.301  Sum_probs=86.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      ..+.++||++.+||.+-+.||||||||||+|+|+|+.+|++|+|+++|..+.  ..+++.++.+-|.--.+.+=.+|||+
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~--~~~~~~~~~l~yLGH~~giK~eLTa~   93 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ--NVRESYHQALLYLGHQPGIKTELTAL   93 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc--cchhhHHHHHHHhhccccccchhhHH
Confidence            6899999999999999999999999999999999999999999999999984  45566778888998999999999999


Q ss_pred             HHHHHHHHhcCC-ChHhHhh
Q 009374          515 EHLHLFANIKGL-PLDSIKS  533 (536)
Q Consensus       515 e~L~~~~~lkg~-~~~~~~~  533 (536)
                      |||.||.++.|- +.+.+.+
T Consensus        94 ENL~F~~~~~~~~~~~~i~~  113 (209)
T COG4133          94 ENLHFWQRFHGSGNAATIWE  113 (209)
T ss_pred             HHHHHHHHHhCCCchhhHHH
Confidence            999999999883 4444443

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.8e-17  Score=169.25  Aligned_cols=103  Identities=23%  Similarity=0.410  Sum_probs=88.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-----cCccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i  478 (536)
                      +..++++|+++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+     |++|+|
T Consensus        43 ~~~l~i~nl~~~~~~~---------------~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I  107 (305)
T PRK14264         43 DAKLSVEDLDVYYGDD---------------HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSV  107 (305)
T ss_pred             CceEEEEEEEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            4579999999999642               59999999999999999999999999999999999986     689999


Q ss_pred             EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          479 LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       479 ~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      .++|.++... .+....++.+||+||+..+++ .|++||+.+...
T Consensus       108 ~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~  151 (305)
T PRK14264        108 ELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPR  151 (305)
T ss_pred             EECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHh
Confidence            9999987421 123456788999999998887 599999987543

>PLN03211 ABC transporter G-25; Provisional

Probab=99.74  E-value=6.2e-18  Score=188.73  Aligned_cols=86  Identities=24%  Similarity=0.368  Sum_probs=77.9

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC--ccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCC
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDAL  511 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt--~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~l  511 (536)
                      +.+|+|+|+++++||++||+||||||||||+++|+|..+|+  +|+|.++|+++.     ++.++++||++|++.+++.+
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~-----~~~~~~i~yv~Q~~~l~~~l  155 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT-----KQILKRTGFVTQDDILYPHL  155 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc-----hhhccceEEECcccccCCcC
Confidence            46999999999999999999999999999999999999885  899999999873     13456799999999999999


Q ss_pred             CHHHHHHHHHHhc
Q 009374          512 SGEEHLHLFANIK  524 (536)
Q Consensus       512 Tv~e~L~~~~~lk  524 (536)
                      ||+|+|.+.+.++
T Consensus       156 TV~E~l~~~a~~~  168 (659)
T PLN03211        156 TVRETLVFCSLLR  168 (659)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987665

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.74  E-value=7.2e-18  Score=187.56  Aligned_cols=110  Identities=16%  Similarity=0.290  Sum_probs=96.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++..|+++              ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus       340 ~i~~~~v~f~y~~~--------------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i  405 (592)
T PRK10790        340 RIDIDNVSFAYRDD--------------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL  405 (592)
T ss_pred             eEEEEEEEEEeCCC--------------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence            59999999999642              1599999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      . ..+.+..|+++||+||++.+|+. |++|||.++.   ..+.+++.+.
T Consensus       406 ~-~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~i~~a  449 (592)
T PRK10790        406 S-SLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR---DISEEQVWQA  449 (592)
T ss_pred             h-hCCHHHHHhheEEEccCCccccc-hHHHHHHhCC---CCCHHHHHHH
Confidence            6 34677889999999999999998 9999999874   3445555443

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.73  E-value=6.9e-18  Score=183.55  Aligned_cols=97  Identities=28%  Similarity=0.410  Sum_probs=84.8

Q ss_pred             EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~  488 (536)
                      ++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus         1 ~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~   65 (491)
T PRK10982          1 MSNISKSFPGV---------------KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFK   65 (491)
T ss_pred             CCceEEEeCCE---------------EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCC
Confidence            36889999642               599999999999999999999999999999999999999999999999998532


Q ss_pred             ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ...+..++.+||+||+..+++.+||+||+.+.
T Consensus        66 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~   97 (491)
T PRK10982         66 SSKEALENGISMVHQELNLVLQRSVMDNMWLG   97 (491)
T ss_pred             CHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence            22344567899999999999999999999874

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.73  E-value=3.4e-18  Score=152.29  Aligned_cols=115  Identities=23%  Similarity=0.381  Sum_probs=100.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +|+++++++.|+..               .++-|++|+.++||.+.||||+|||||||+|.|.-+.-|.+|+..|.|...
T Consensus         2 sirv~~in~~yg~~---------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f   66 (242)
T COG4161           2 SIQLNGINCFYGAH---------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             ceEEcccccccccc---------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence            58999999999764               699999999999999999999999999999999999999999999988643


Q ss_pred             C-----CcccHHHhhcceEEEcCCCCCCCCCCHHHHHH-HHHHhcCCChHhHhhhh
Q 009374          486 R-----SSVSMTNIQKSIGVCPQFNILWDALSGEEHLH-LFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~-----~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~-~~~~lkg~~~~~~~~~v  535 (536)
                      +     ......+.|+++|+++|...|||+|||.|||. -.++..|+++++...++
T Consensus        67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a  122 (242)
T COG4161          67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA  122 (242)
T ss_pred             ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHH
Confidence            2     12345678999999999999999999999984 47899999988776543

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.73  E-value=8e-18  Score=190.60  Aligned_cols=113  Identities=20%  Similarity=0.384  Sum_probs=95.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++++            ++.+++|+||++++||.++|+|||||||||++++|.|+++|++|+|.++|.+
T Consensus       477 ~~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~  544 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRP------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP  544 (711)
T ss_pred             CeEEEEEEEEECCCCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence            3599999999997531            1259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      +.+ .+.+..|+++|||||++.+|+. |++|||.+...  ..+.+++.+
T Consensus       545 i~~-~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~~e~i~~  589 (711)
T TIGR00958       545 LVQ-YDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT--DTPDEEIMA  589 (711)
T ss_pred             HHh-cCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--CCCHHHHHH
Confidence            863 4567889999999999999975 99999987531  234444443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.73  E-value=1.3e-17  Score=155.09  Aligned_cols=96  Identities=21%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++++.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.   
T Consensus         1 i~~~~~~~~~~~~--------------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---   63 (166)
T cd03223           1 IELENLSLATPDG--------------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---   63 (166)
T ss_pred             CEEEEEEEEcCCC--------------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---
Confidence            3678999999532              15999999999999999999999999999999999999999999998762   


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                               +.+||+||++.++ .+|++||+.+. ..+.++..+
T Consensus        64 ---------~~i~~~~q~~~~~-~~tv~~nl~~~-~~~~LS~G~   96 (166)
T cd03223          64 ---------EDLLFLPQRPYLP-LGTLREQLIYP-WDDVLSGGE   96 (166)
T ss_pred             ---------ceEEEECCCCccc-cccHHHHhhcc-CCCCCCHHH
Confidence                     5699999998765 67999999763 234444443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.73  E-value=1.1e-17  Score=186.00  Aligned_cols=110  Identities=20%  Similarity=0.245  Sum_probs=94.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++..|.+.              ..+++|+||++++||.++|+|+|||||||++++|+|++ |++|+|.++|.|+
T Consensus       349 ~i~~~~vsf~~~~~--------------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i  413 (588)
T PRK11174        349 TIEAEDLEILSPDG--------------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL  413 (588)
T ss_pred             eEEEEeeEEeccCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEec
Confidence            59999999766432              15899999999999999999999999999999999999 9999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++ -+.+.+|+++|||||++.||+. |++||+.+..  ...+.+++.+.
T Consensus       414 ~~-~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~a  458 (588)
T PRK11174        414 RE-LDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQA  458 (588)
T ss_pred             cc-CCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHH
Confidence            63 4667889999999999999987 9999998863  23556665544

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.73  E-value=2.1e-17  Score=184.29  Aligned_cols=118  Identities=22%  Similarity=0.301  Sum_probs=93.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++||+|.|+.....    ..++.+.+.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus       312 ~~L~~~~l~~~y~~~~~~----~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~  387 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGL----LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR  387 (623)
T ss_pred             ceEEEeeeEEEEcCCCcc----ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence            479999999999632000    0000112369999999999999999999999999999999999999999999999998


Q ss_pred             cCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcCC
Q 009374          485 IRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       485 i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +....  +.+..++.+||+||++  .+++.+|+.|++.+....++.
T Consensus       388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~  433 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL  433 (623)
T ss_pred             CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC
Confidence            85321  1234567899999996  689999999999886655554

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=1.4e-15  Score=172.94  Aligned_cols=105  Identities=25%  Similarity=0.291  Sum_probs=88.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcC
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG  482 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g  482 (536)
                      ....++|+.+.-+.+.           +.++.|+||+=-++||-.+||+|+|||||||||++|+|...  ..+|+|.|+|
T Consensus       786 ~V~~w~dl~~~~~~qG-----------~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G  854 (1391)
T KOG0065|consen  786 DVFYWVDLPYEMPIQG-----------GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISG  854 (1391)
T ss_pred             ceEEEEeCCccccccc-----------cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECC
Confidence            3566777766654321           23379999999999999999999999999999999999853  4679999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      ++..    .+..+|.+|||-|+|.-.+++||||-|++-|.+|
T Consensus       855 ~p~~----q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LR  892 (1391)
T KOG0065|consen  855 FPKD----QETFARVSGYVEQQDIHSPELTVRESLRFSAALR  892 (1391)
T ss_pred             eeCc----hhhhccccceeecccccCcccchHHHHHHHHHHc
Confidence            9863    2567889999999999999999999999999988

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.73  E-value=1.9e-17  Score=164.49  Aligned_cols=101  Identities=27%  Similarity=0.374  Sum_probs=86.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcC
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG  482 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g  482 (536)
                      ..++++++++.|++.               .+++|+||++++||++||+|+||||||||+++|+|+  ++|++|+|+++|
T Consensus         6 ~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g   70 (252)
T CHL00131          6 PILEIKNLHASVNEN---------------EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG   70 (252)
T ss_pred             ceEEEEeEEEEeCCE---------------EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECC
Confidence            369999999999642               599999999999999999999999999999999998  579999999999


Q ss_pred             EecCCcccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          483 FSIRSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       483 ~~i~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .++... +....+ ..++++||++.+++.+|++|++.+..
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~  109 (252)
T CHL00131         71 ESILDL-EPEERAHLGIFLAFQYPIEIPGVSNADFLRLAY  109 (252)
T ss_pred             EEcccC-ChhhhheeeEEEEeccccccccccHHHHHHHhh
Confidence            988532 222222 25899999999999999999998754

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.73  E-value=8.6e-18  Score=186.64  Aligned_cols=100  Identities=20%  Similarity=0.425  Sum_probs=90.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++..             ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus       341 ~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i  407 (582)
T PRK11176        341 DIEFRNVTFTYPGKE-------------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL  407 (582)
T ss_pred             eEEEEEEEEecCCCC-------------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence            599999999997531             2599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+.+..|+.+||+||++.+|+. |++|||.+.
T Consensus       408 ~~-~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~  440 (582)
T PRK11176        408 RD-YTLASLRNQVALVSQNVHLFND-TIANNIAYA  440 (582)
T ss_pred             hh-cCHHHHHhhceEEccCceeecc-hHHHHHhcC
Confidence            53 4567789999999999999985 999999875

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.73  E-value=1.3e-17  Score=162.02  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=83.1

Q ss_pred             EEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (536)
Q Consensus       408 ~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~  487 (536)
                      .+.++.+.|++.              ..+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++..
T Consensus         2 ~~~~~~~~~~~~--------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~   67 (218)
T cd03290           2 QVTNGYFSWGSG--------------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE   67 (218)
T ss_pred             eeeeeEEecCCC--------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccc
Confidence            567888999643              159999999999999999999999999999999999999999999999987742


Q ss_pred             cc---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          488 SV---SMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       488 ~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      ..   .....|+.+||++|++.++ +.|++||+.+..
T Consensus        68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~  103 (218)
T cd03290          68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGS  103 (218)
T ss_pred             ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcC
Confidence            11   1123457799999999888 579999998753

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.1e-17  Score=177.14  Aligned_cols=111  Identities=25%  Similarity=0.360  Sum_probs=95.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++.+|+++.|++++              ++++|+||++++|+.++|+|+|||||||++++|.|+.+|++|+|.+||.+.
T Consensus       320 ei~~~~l~~~y~~g~--------------~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l  385 (559)
T COG4988         320 EISLENLSFRYPDGK--------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL  385 (559)
T ss_pred             eeeecceEEecCCCC--------------cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence            455669999997642              599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++ -+.+.+|++++++||++.+|+. |++||+.++..-  .+++++.+.
T Consensus       386 ~~-l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~--~s~e~i~~a  430 (559)
T COG4988         386 RD-LSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD--ASDEEIIAA  430 (559)
T ss_pred             cc-cCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc--CCHHHHHHH
Confidence            64 4567899999999999999987 999999887432  345555544

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.72  E-value=1.1e-17  Score=160.76  Aligned_cols=89  Identities=20%  Similarity=0.297  Sum_probs=77.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++||+|.|+++.          ...+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|    
T Consensus         1 l~~~~l~~~~~~~~----------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----   66 (204)
T cd03250           1 ISVEDASFTWDSGE----------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----   66 (204)
T ss_pred             CEEeEEEEecCCCC----------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----
Confidence            46899999996531          0002599999999999999999999999999999999999999999999987    


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                ++||+||++.++ .+|++||+.+.
T Consensus        67 ----------~i~~~~q~~~l~-~~t~~enl~~~   89 (204)
T cd03250          67 ----------SIAYVSQEPWIQ-NGTIRENILFG   89 (204)
T ss_pred             ----------EEEEEecCchhc-cCcHHHHhccC
Confidence                      499999999988 56999999875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.72  E-value=1e-17  Score=189.55  Aligned_cols=112  Identities=23%  Similarity=0.380  Sum_probs=95.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++++|++..             ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.|
T Consensus       462 ~~I~~~~vsf~Y~~~~-------------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  528 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQE-------------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD  528 (694)
T ss_pred             ceEEEEEEEEEeCCCC-------------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            3699999999997531             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ++. .+.+..|+.+|||||++.+|+. |++|||.+...  ..+.+++.+
T Consensus       529 l~~-~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~  573 (694)
T TIGR03375       529 IRQ-IDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP--YADDEEILR  573 (694)
T ss_pred             hhh-CCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHH
Confidence            863 4567889999999999999986 99999987532  234454443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.72  E-value=2.9e-17  Score=163.37  Aligned_cols=103  Identities=19%  Similarity=0.299  Sum_probs=86.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc----CccEEEEc
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIY  481 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p----t~G~i~i~  481 (536)
                      .++++|++|.| +.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|    ++|+|.++
T Consensus         4 ~l~~~~l~~~~-~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~   67 (254)
T PRK10418          4 QIELRNIALQA-AQ---------------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD   67 (254)
T ss_pred             EEEEeCeEEEe-cc---------------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence            68999999999 32               589999999999999999999999999999999999999    99999999


Q ss_pred             CEecCCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHHHhcCCC
Q 009374          482 GFSIRSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       482 g~~i~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      |.++..   .+..++.+||+||++.  +.+.+|+.+++....+..|..
T Consensus        68 g~~i~~---~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (254)
T PRK10418         68 GKPVAP---CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP  112 (254)
T ss_pred             Ceeccc---cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCC
Confidence            998842   1223467999999974  556789999987765555543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.72  E-value=1.8e-17  Score=182.47  Aligned_cols=102  Identities=23%  Similarity=0.416  Sum_probs=90.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..             ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|.++|.+
T Consensus       315 ~~i~~~~v~~~y~~~~-------------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~  381 (544)
T TIGR01842       315 GHLSVENVTIVPPGGK-------------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGAD  381 (544)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence            3599999999996431             258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +.. .+.+..|+.+|||||++.+|+. |++||+.++.
T Consensus       382 i~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~  416 (544)
T TIGR01842       382 LKQ-WDRETFGKHIGYLPQDVELFPG-TVAENIARFG  416 (544)
T ss_pred             hhh-CCHHHHhhheEEecCCcccccc-cHHHHHhccC
Confidence            863 3556788999999999999987 9999998643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=3.6e-17  Score=168.75  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=85.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc----cCccEEEEc
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIY  481 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~----pt~G~i~i~  481 (536)
                      .++++||+|.|+...           +.+.|++|+||+|++||++||+|+||||||||+++|+|+.+    |++|+|.++
T Consensus         3 ~L~v~~l~~~y~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~   71 (330)
T PRK15093          3 LLDIRNLTIEFKTSD-----------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFD   71 (330)
T ss_pred             eEEEeeeEEEEeCCC-----------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEEC
Confidence            589999999996421           12369999999999999999999999999999999999986    589999999


Q ss_pred             CEecCCccc--HHHh-hcceEEEcCCCC--CCCCCCHHHHHHHH
Q 009374          482 GFSIRSSVS--MTNI-QKSIGVCPQFNI--LWDALSGEEHLHLF  520 (536)
Q Consensus       482 g~~i~~~~~--~~~~-~~~ig~~pQ~~~--l~~~lTv~e~L~~~  520 (536)
                      |.++.....  .... ++.+||+||++.  +.+.+|+.|++...
T Consensus        72 g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~  115 (330)
T PRK15093         72 DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN  115 (330)
T ss_pred             CEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence            999853221  1222 357999999975  78899999999763

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.71  E-value=3.6e-18  Score=153.24  Aligned_cols=90  Identities=18%  Similarity=0.382  Sum_probs=84.1

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      ++|+++||.+++||..+|.||+||||||++++++-+.+||+|++++.|+++.. .+.+..|+.+.||-|.+.||++ ||+
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~-~~pea~Rq~VsY~~Q~paLfg~-tVe   94 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST-LKPEAYRQQVSYCAQTPALFGD-TVE   94 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc-cChHHHHHHHHHHHcCcccccc-chh
Confidence            69999999999999999999999999999999999999999999999999963 5678899999999999999998 999


Q ss_pred             HHHHHHHHhcCC
Q 009374          515 EHLHLFANIKGL  526 (536)
Q Consensus       515 e~L~~~~~lkg~  526 (536)
                      +||.|.-+++.-
T Consensus        95 DNlifP~~~r~r  106 (223)
T COG4619          95 DNLIFPWQIRNR  106 (223)
T ss_pred             hccccchHHhcc
Confidence            999998877643

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.71  E-value=3.3e-17  Score=162.87  Aligned_cols=100  Identities=20%  Similarity=0.293  Sum_probs=82.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe-
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS-  484 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~-  484 (536)
                      .++++|+++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+ 
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (253)
T TIGR02323         3 LLQVSGLSKSYGGG---------------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG   67 (253)
T ss_pred             eEEEeeeEEEeCCc---------------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccc
Confidence            68999999999642               58999999999999999999999999999999999999999999999976 


Q ss_pred             ----cCCcccH--H-HhhcceEEEcCCCC--CCCCCCHHHHHHHH
Q 009374          485 ----IRSSVSM--T-NIQKSIGVCPQFNI--LWDALSGEEHLHLF  520 (536)
Q Consensus       485 ----i~~~~~~--~-~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~  520 (536)
                          +......  . ..++.+||+||++.  +.+.+|+.|++...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~  112 (253)
T TIGR02323        68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGER  112 (253)
T ss_pred             cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHH
Confidence                5321111  1 13467999999974  56678999998653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.71  E-value=2.6e-17  Score=180.31  Aligned_cols=110  Identities=21%  Similarity=0.322  Sum_probs=87.9

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEc---
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIY---  481 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~---  481 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.  +|++|+|.++   
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~   65 (520)
T TIGR03269         1 IEVKNLTKKFDGK---------------EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL   65 (520)
T ss_pred             CEEEEEEEEECCe---------------EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccc
Confidence            4689999999542               5999999999999999999999999999999999997  7999999997   


Q ss_pred             --------------------CEecC-------C--cccHHHhhcceEEEcCC-CCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          482 --------------------GFSIR-------S--SVSMTNIQKSIGVCPQF-NILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       482 --------------------g~~i~-------~--~~~~~~~~~~ig~~pQ~-~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                                          |.++.       .  .......|+.+||+||+ +.+++.+|++||+.+....+|.+.++.
T Consensus        66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~  145 (520)
T TIGR03269        66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEA  145 (520)
T ss_pred             cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence                                32221       0  00112356789999997 789999999999988666666655443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.71  E-value=3.2e-17  Score=162.40  Aligned_cols=98  Identities=22%  Similarity=0.356  Sum_probs=82.3

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCEe
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGFS  484 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~~  484 (536)
                      ++++|++|.|+++               .+++|+||++++||+++|+|+||||||||+++|+|+.  +|++|+|.++|.+
T Consensus         2 i~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~   66 (248)
T PRK09580          2 LSIKDLHVSVEDK---------------AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD   66 (248)
T ss_pred             eEEEEEEEEeCCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCc
Confidence            6899999999642               5999999999999999999999999999999999995  6999999999988


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      +.........++.+||++|++.+++.+|+.+++..
T Consensus        67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~  101 (248)
T PRK09580         67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT  101 (248)
T ss_pred             cccCCHHHHhhcceEEEecCchhccchhHHHHHHH
Confidence            74321122234679999999999998887777654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.71  E-value=5.6e-17  Score=177.66  Aligned_cols=109  Identities=18%  Similarity=0.296  Sum_probs=87.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc-C
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY-G  482 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~-g  482 (536)
                      ...++++|++|.|++..          .+.+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus       277 ~~~l~~~~l~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g  346 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVD----------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVG  346 (520)
T ss_pred             CceEEEeccEEEeccCC----------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecC
Confidence            34799999999996310          011259999999999999999999999999999999999999999999996 6


Q ss_pred             Ee---cCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          483 FS---IRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       483 ~~---i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      .+   +....  +....++++||+||++.+++.+|++||+.+...
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~  391 (520)
T TIGR03269       347 DEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG  391 (520)
T ss_pred             CccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH
Confidence            42   22111  122346679999999999999999999987543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.71  E-value=3.7e-17  Score=151.66  Aligned_cols=88  Identities=30%  Similarity=0.518  Sum_probs=74.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         1 l~~~~l~~~~~~~---------------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~   65 (163)
T cd03216           1 LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS   65 (163)
T ss_pred             CEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC
Confidence            3688999999642               5999999999999999999999999999999999999999999999999885


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                      .....+..++.+||+||       |+..|.
T Consensus        66 ~~~~~~~~~~~i~~~~q-------LS~G~~   88 (163)
T cd03216          66 FASPRDARRAGIAMVYQ-------LSVGER   88 (163)
T ss_pred             cCCHHHHHhcCeEEEEe-------cCHHHH
Confidence            32222345678999999       666554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.71  E-value=2.8e-17  Score=179.61  Aligned_cols=99  Identities=15%  Similarity=0.371  Sum_probs=85.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|+                 .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus       264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~  326 (510)
T PRK09700        264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD  326 (510)
T ss_pred             cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence            4699999998652                 38999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCC---CCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQF---NILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~---~~l~~~lTv~e~L~~~  520 (536)
                      +......+..++.+||+||+   ..+++++|++||+.+.
T Consensus       327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~  365 (510)
T PRK09700        327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS  365 (510)
T ss_pred             CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence            84322223456789999998   5789999999999874

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.70  E-value=3.9e-17  Score=181.53  Aligned_cols=110  Identities=24%  Similarity=0.362  Sum_probs=94.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++++              .+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus       333 ~~I~~~~vsf~y~~~~--------------~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~  398 (588)
T PRK13657        333 GAVEFDDVSFSYDNSR--------------QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD  398 (588)
T ss_pred             CeEEEEEEEEEeCCCC--------------ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence            3599999999996421              48999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~  532 (536)
                      +.+ .+.+..|++++|+||++.+|+. |++||+.+..  ...+.+++.
T Consensus       399 i~~-~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~  442 (588)
T PRK13657        399 IRT-VTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR--PDATDEEMR  442 (588)
T ss_pred             hhh-CCHHHHHhheEEEecCcccccc-cHHHHHhcCC--CCCCHHHHH
Confidence            863 4567889999999999999976 9999998752  223444443

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.70  E-value=3.1e-17  Score=181.45  Aligned_cols=100  Identities=19%  Similarity=0.316  Sum_probs=89.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++++++|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++
T Consensus       313 ~I~~~~v~~~y~~~~-------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~  379 (569)
T PRK10789        313 ELDVNIRQFTYPQTD-------------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL  379 (569)
T ss_pred             cEEEEEEEEECCCCC-------------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEH
Confidence            589999999997531             2589999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+.+..|+.+|||||++.+|+. |++||+.+.
T Consensus       380 ~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~  412 (569)
T PRK10789        380 TK-LQLDSWRSRLAVVSQTPFLFSD-TVANNIALG  412 (569)
T ss_pred             hh-CCHHHHHhheEEEccCCeeccc-cHHHHHhcC
Confidence            63 3567789999999999999986 999999875

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.70  E-value=3e-17  Score=182.04  Aligned_cols=102  Identities=23%  Similarity=0.387  Sum_probs=90.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++..|++..            +..+++|+||++++||.++++|+||||||||+++|+|+++|++|+|+++|.+
T Consensus       336 ~~i~~~~v~f~y~~~~------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~  403 (576)
T TIGR02204       336 GEIEFEQVNFAYPARP------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD  403 (576)
T ss_pred             ceEEEEEEEEECCCCC------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence            3599999999997531            1258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.+ .+.+.+|+.+|||||++.+|+. |++|||.+.
T Consensus       404 i~~-~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~  437 (576)
T TIGR02204       404 LRQ-LDPAELRARMALVPQDPVLFAA-SVMENIRYG  437 (576)
T ss_pred             HHh-cCHHHHHHhceEEccCCccccc-cHHHHHhcC
Confidence            863 4567788999999999999976 999999774

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.70  E-value=3.6e-17  Score=182.28  Aligned_cols=88  Identities=25%  Similarity=0.385  Sum_probs=80.4

Q ss_pred             CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD  509 (536)
Q Consensus       433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~  509 (536)
                      ++.+|+|+|+++++||+++|+||||||||||+++|+|..+|.   +|+|.++|.++.    ....++.+|||||+|.+++
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~----~~~~~~~i~yv~Q~~~~~~  112 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID----AKEMRAISAYVQQDDLFIP  112 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----HHHHhhhceeeccccccCc
Confidence            457999999999999999999999999999999999999885   799999999873    2456788999999999999


Q ss_pred             CCCHHHHHHHHHHhc
Q 009374          510 ALSGEEHLHLFANIK  524 (536)
Q Consensus       510 ~lTv~e~L~~~~~lk  524 (536)
                      .+||+|||.+.++++
T Consensus       113 ~lTV~e~l~f~~~~~  127 (617)
T TIGR00955       113 TLTVREHLMFQAHLR  127 (617)
T ss_pred             cCcHHHHHHHHHhcC
Confidence            999999999988876

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.70  E-value=3.3e-17  Score=185.47  Aligned_cols=101  Identities=20%  Similarity=0.354  Sum_probs=90.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++++|++..             ..+++|+||++++||.++|+|+|||||||++++|+|+++|++|+|+++|.+
T Consensus       454 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~  520 (694)
T TIGR01846       454 GAITFENIRFRYAPDS-------------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD  520 (694)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence            3699999999996431             158999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ++. .+.+..|+.+|||||++.+|+. |++|||.+.
T Consensus       521 i~~-~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~  554 (694)
T TIGR01846       521 LAI-ADPAWLRRQMGVVLQENVLFSR-SIRDNIALC  554 (694)
T ss_pred             hhh-CCHHHHHHhCeEEccCCeehhh-hHHHHHhcC
Confidence            863 4567889999999999999975 999999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.70  E-value=3.4e-17  Score=178.51  Aligned_cols=104  Identities=18%  Similarity=0.233  Sum_probs=87.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcCE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGF  483 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g~  483 (536)
                      ..++++|+++.|++..            ...+++|+||++++||++||+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus       256 ~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~  323 (500)
T TIGR02633       256 VILEARNLTCWDVINP------------HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGK  323 (500)
T ss_pred             ceEEEeCCcccccccc------------cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCE
Confidence            3689999999984310            11589999999999999999999999999999999999985 8999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~  520 (536)
                      ++.........++++||+||+.   .+++.+|++|++.+.
T Consensus       324 ~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~  363 (500)
T TIGR02633       324 PVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS  363 (500)
T ss_pred             ECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence            8843222345677899999995   589999999999774

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.70  E-value=5.9e-17  Score=179.71  Aligned_cols=99  Identities=30%  Similarity=0.386  Sum_probs=89.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.+              .+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.++
T Consensus       334 ~i~~~~v~~~y~~~~--------------~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  399 (585)
T TIGR01192       334 AVEFRHITFEFANSS--------------QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI  399 (585)
T ss_pred             eEEEEEEEEECCCCC--------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence            599999999997531              489999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .+ .+.+..|+.+||+||++.+++ .|++||+.+.
T Consensus       400 ~~-~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~  432 (585)
T TIGR01192       400 NT-VTRESLRKSIATVFQDAGLFN-RSIRENIRLG  432 (585)
T ss_pred             hh-CCHHHHHhheEEEccCCccCc-ccHHHHHhcC
Confidence            63 345678899999999999997 5999999875

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.70  E-value=5.1e-17  Score=159.21  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc----CccEEEEcCEecCCcccHHHhhcceEEEcCCCC--CCC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI--LWD  509 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p----t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~--l~~  509 (536)
                      +++|+||++++||+++|+||||||||||+++|+|+.+|    ++|+|.++|+++..   .+..++.+||+||++.  +.+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~---~~~~~~~i~~~~q~~~~~~~~   77 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP---LSIRGRHIATIMQNPRTAFNP   77 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh---hhhhhheeEEEecCchhhcCc
Confidence            57899999999999999999999999999999999999    89999999998842   2223467999999974  667


Q ss_pred             CCCHHHHHHHHHHhcCC
Q 009374          510 ALSGEEHLHLFANIKGL  526 (536)
Q Consensus       510 ~lTv~e~L~~~~~lkg~  526 (536)
                      .+|++|++.+.....+.
T Consensus        78 ~~t~~~~~~~~~~~~~~   94 (230)
T TIGR02770        78 LFTMGNHAIETLRSLGK   94 (230)
T ss_pred             ccCHHHHHHHHHHHcCc
Confidence            89999999876655544

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.70  E-value=1.7e-17  Score=150.94  Aligned_cols=94  Identities=19%  Similarity=0.339  Sum_probs=82.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +.+++++..|+..                 =-..+++|+.||+++++||+|||||||+|+++|...|.+|+|.|+|.|..
T Consensus         2 l~L~~V~~~y~~~-----------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t   64 (231)
T COG3840           2 LALDDVRFSYGHL-----------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT   64 (231)
T ss_pred             ccccceEEeeCcc-----------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC
Confidence            5678888999642                 33578999999999999999999999999999999999999999999974


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .   ....+|-+.+++|+++||.+|||++|+.+.
T Consensus        65 ~---~~P~~RPVSmlFQEnNLFaHLtV~qNigLG   95 (231)
T COG3840          65 A---SPPAERPVSMLFQENNLFAHLTVAQNIGLG   95 (231)
T ss_pred             c---CCcccCChhhhhhccccchhhhhhhhhccc
Confidence            2   234566799999999999999999999874

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.70  E-value=3.7e-17  Score=181.15  Aligned_cols=112  Identities=16%  Similarity=0.333  Sum_probs=95.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++++|++..             ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus       330 ~i~~~~v~f~y~~~~-------------~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i  396 (571)
T TIGR02203       330 DVEFRNVTFRYPGRD-------------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL  396 (571)
T ss_pred             eEEEEEEEEEcCCCC-------------CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence            599999999996531             1589999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      .. .+.++.|++++||||++.+|+. |++|||.++. -+..+.+++.+
T Consensus       397 ~~-~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~~~~~~~~i~~  441 (571)
T TIGR02203       397 AD-YTLASLRRQVALVSQDVVLFND-TIANNIAYGR-TEQADRAEIER  441 (571)
T ss_pred             Hh-cCHHHHHhhceEEccCcccccc-cHHHHHhcCC-CCCCCHHHHHH
Confidence            53 4567789999999999999977 9999998764 11344444443

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.69  E-value=7.2e-17  Score=160.20  Aligned_cols=87  Identities=26%  Similarity=0.416  Sum_probs=77.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|   
T Consensus         4 ~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---   65 (251)
T PRK09544          4 LVSLENVSVSFGQR---------------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---   65 (251)
T ss_pred             EEEEeceEEEECCc---------------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---
Confidence            68999999999642               599999999999999999999999999999999999999999999876   


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCC--CHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDAL--SGEEHLHL  519 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~l--Tv~e~L~~  519 (536)
                               ++.+||+||+..+++.+  |++|++.+
T Consensus        66 ---------~~~i~~v~q~~~~~~~l~~~~~~~~~~   92 (251)
T PRK09544         66 ---------KLRIGYVPQKLYLDTTLPLTVNRFLRL   92 (251)
T ss_pred             ---------ccCEEEeccccccccccChhHHHHHhc
Confidence                     23599999998887764  78887654

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.69  E-value=4.3e-17  Score=161.60  Aligned_cols=84  Identities=23%  Similarity=0.315  Sum_probs=74.4

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      +++|+||++++||+++|+|+||||||||+++|+|+.++ +|+|.++|.++.. .+....++.+||+||++.+++.+|++|
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEA-WSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCc-CCHHHHhhheEEecccCccCCCccHHH
Confidence            79999999999999999999999999999999999864 8999999998852 233455667999999998888999999


Q ss_pred             HHHHHH
Q 009374          516 HLHLFA  521 (536)
Q Consensus       516 ~L~~~~  521 (536)
                      |+.+..
T Consensus        89 nl~~~~   94 (248)
T PRK03695         89 YLTLHQ   94 (248)
T ss_pred             HHHhcC
Confidence            998864

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.69  E-value=3.9e-17  Score=180.74  Aligned_cols=113  Identities=25%  Similarity=0.415  Sum_probs=98.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++..|+++              .++++|+||++++||.+|++|||||||||+++.|.|+++|++|+|.+||.|
T Consensus       327 ~~I~f~~vsf~y~~~--------------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d  392 (567)
T COG1132         327 GSIEFENVSFSYPGK--------------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID  392 (567)
T ss_pred             CeEEEEEEEEEcCCC--------------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence            349999999999742              159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      +++ -+.+..|+++|++||++.||. -|++||+.+...-  .+.+++.+.+
T Consensus       393 I~~-i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~  439 (567)
T COG1132         393 IRD-ISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--ATDEEIEEAL  439 (567)
T ss_pred             hhh-cCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC--CCHHHHHHHH
Confidence            974 567889999999999999999 5999999887432  3455555443

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.69  E-value=1.6e-16  Score=177.98  Aligned_cols=114  Identities=18%  Similarity=0.358  Sum_probs=94.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++.+           +.+.+++|+||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++
T Consensus         4 ~l~~~nl~~~y~~~~-----------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i   72 (648)
T PRK10535          4 LLELKDIRRSYPSGE-----------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDV   72 (648)
T ss_pred             EEEEeeEEEEeCCCC-----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            689999999996421           112599999999999999999999999999999999999999999999999998


Q ss_pred             CCccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .....  ..+. ++.+||+||+..+++++|+.||+.+.....|.+.++
T Consensus        73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~  120 (648)
T PRK10535         73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ  120 (648)
T ss_pred             CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            53211  1122 568999999999999999999999876666655443

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.69  E-value=3.3e-17  Score=147.00  Aligned_cols=79  Identities=30%  Similarity=0.603  Sum_probs=73.8

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                      |+|+|+++++||+++|+|+||||||||+++|+|..+|++|+|.++|.++.. .+....++.++|+||++.+++.+|++|+
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999999963 3456778899999999999999999998

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.3e-17  Score=170.78  Aligned_cols=100  Identities=23%  Similarity=0.389  Sum_probs=90.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...|+.+|+++.|..+              +++++|+||++++|+.++|+||+||||||+||+|-++...++|.|.|+|+
T Consensus       535 ~G~i~fsnvtF~Y~p~--------------k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgq  600 (790)
T KOG0056|consen  535 QGKIEFSNVTFAYDPG--------------KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQ  600 (790)
T ss_pred             CCeEEEEEeEEecCCC--------------CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCc
Confidence            4469999999999754              26999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ||+. ..+...|++||++||+..||.+ |+..|+++
T Consensus       601 dIrn-vt~~SLRs~IGVVPQDtvLFNd-TI~yNIry  634 (790)
T KOG0056|consen  601 DIRN-VTQSSLRSSIGVVPQDTVLFND-TILYNIRY  634 (790)
T ss_pred             hHHH-HHHHHHHHhcCcccCcceeecc-eeeeheee
Confidence            9973 4567889999999999999987 78877764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.69  E-value=7.2e-17  Score=162.23  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=80.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|+++              +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         6 ~l~~~~l~~~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (272)
T PRK15056          6 GIVVNDVTVTWRNG--------------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT   71 (272)
T ss_pred             eEEEEeEEEEecCC--------------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence            58999999999632              1599999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCC--CCCCHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILW--DALSGEEHLHL  519 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~--~~lTv~e~L~~  519 (536)
                      ..    ...++.+||+||++.+.  ...+++|++.+
T Consensus        72 ~~----~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~  103 (272)
T PRK15056         72 RQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMM  103 (272)
T ss_pred             HH----hhccceEEEeccccccccCCCcchhhheec
Confidence            31    11234699999997652  23478888754

>PLN03130 ABC transporter C family member; Provisional

Probab=99.69  E-value=6.3e-17  Score=195.91  Aligned_cols=112  Identities=21%  Similarity=0.349  Sum_probs=96.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++|++++|++..             ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus      1236 g~I~f~nVsf~Y~~~~-------------~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~d 1302 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPEL-------------PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCD 1302 (1622)
T ss_pred             CcEEEEEEEEEeCCCC-------------CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEe
Confidence            3699999999996431             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      +++ -+.+++|+++|++||++.||+. |+||||..+.   ..+.+++.+.
T Consensus      1303 I~~-i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~---~~tdeei~~A 1347 (1622)
T PLN03130       1303 ISK-FGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN---EHNDADLWES 1347 (1622)
T ss_pred             ccc-CCHHHHHhccEEECCCCccccc-cHHHHhCcCC---CCCHHHHHHH
Confidence            963 4678899999999999999987 9999997653   2345555443

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.69  E-value=1.9e-16  Score=158.30  Aligned_cols=113  Identities=22%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             ceEEEeeeEEEcCCCCc-Ccccc--c--cCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374          405 VAVQIRGLVKTFPGTRK-IGCCC--K--CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~-~~~~~--~--~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~  479 (536)
                      ..++++||+|.|...+. .++..  .  .++...+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~   82 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD   82 (264)
T ss_pred             ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence            46899999999976321 00000  0  0122455799999999999999999999999999999999999999999999


Q ss_pred             EcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          480 IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       480 i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ++|.              +++++|...+.+.+|++||+.+.....|.+.++.
T Consensus        83 ~~g~--------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~  120 (264)
T PRK13546         83 RNGE--------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI  120 (264)
T ss_pred             ECCE--------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence            9884              3467777778888999999988766666654443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.69  E-value=1.5e-16  Score=174.71  Aligned_cols=115  Identities=18%  Similarity=0.288  Sum_probs=90.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDAL  479 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i~  479 (536)
                      +.++++|+++.|++..           ..+.+++|+||++++||++||+||||||||||+++|+|+++|     ++|+|.
T Consensus         4 ~~l~~~~l~~~~~~~~-----------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~   72 (529)
T PRK15134          4 PLLAIENLSVAFRQQQ-----------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIR   72 (529)
T ss_pred             ceEEEeceEEEecCCC-----------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEE
Confidence            3689999999996321           012699999999999999999999999999999999999986     799999


Q ss_pred             EcCEecCCccc--HHHhh-cceEEEcCCCC--CCCCCCHHHHHHHHHHh-cCCChHh
Q 009374          480 IYGFSIRSSVS--MTNIQ-KSIGVCPQFNI--LWDALSGEEHLHLFANI-KGLPLDS  530 (536)
Q Consensus       480 i~g~~i~~~~~--~~~~~-~~ig~~pQ~~~--l~~~lTv~e~L~~~~~l-kg~~~~~  530 (536)
                      ++|.++.....  ....| +.+||+||+..  +++.+|++|++.+.... .|.+.++
T Consensus        73 ~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (529)
T PRK15134         73 FHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA  129 (529)
T ss_pred             ECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHH
Confidence            99999853211  12233 57999999964  67889999998875443 3555443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.68  E-value=9.6e-17  Score=176.13  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|+.....    ..++.+.+.+++|+||++++||++||+|+||||||||+++|+|+++ ++|+|+++|.+
T Consensus       274 ~~l~~~~l~~~~~~~~~~----~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~  348 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGI----LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQP  348 (529)
T ss_pred             CcccccCcEEEeecCccc----cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEE
Confidence            468999999999531000    0000012369999999999999999999999999999999999985 89999999998


Q ss_pred             cCCcc--cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc
Q 009374          485 IRSSV--SMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       485 i~~~~--~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk  524 (536)
                      +....  +....++.+||+||+.  .+++.+||+||+.+....+
T Consensus       349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~  392 (529)
T PRK15134        349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH  392 (529)
T ss_pred             ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhc
Confidence            74211  1223467899999996  5889999999998865443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=8e-17  Score=175.81  Aligned_cols=104  Identities=19%  Similarity=0.333  Sum_probs=86.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-cCccEEEEcCE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIYGF  483 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-pt~G~i~i~g~  483 (536)
                      ..++++|++|.|+...            .+.+++|+||++++||++||+|+||||||||+++|+|+.+ |++|+|.++|.
T Consensus       258 ~~l~~~~l~~~~~~~~------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~  325 (506)
T PRK13549        258 VILEVRNLTAWDPVNP------------HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGK  325 (506)
T ss_pred             ceEEEecCcccccccc------------ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCE
Confidence            3689999999995310            1259999999999999999999999999999999999998 59999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~  520 (536)
                      ++......+..++.+||+||+.   .+++.+|+.||+.+.
T Consensus       326 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~  365 (506)
T PRK13549        326 PVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA  365 (506)
T ss_pred             ECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence            8843222234567899999995   588899999999864

>PLN03232 ABC transporter C family member; Provisional

Probab=99.68  E-value=5.7e-17  Score=195.98  Aligned_cols=111  Identities=14%  Similarity=0.290  Sum_probs=95.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++|++++|++..             ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|+
T Consensus      1234 ~I~f~nVsf~Y~~~~-------------~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di 1300 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGL-------------PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV 1300 (1495)
T ss_pred             cEEEEEEEEEECCCC-------------CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEh
Confidence            599999999996431             1599999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++ -+.+++|+++|++||++.||+. |+||||..+.   ..+.+++.+.
T Consensus      1301 ~~-i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~a 1344 (1495)
T PLN03232       1301 AK-FGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS---EHNDADLWEA 1344 (1495)
T ss_pred             hh-CCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---CCCHHHHHHH
Confidence            63 4567899999999999999987 9999997653   3455555443

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.68  E-value=3.6e-17  Score=152.57  Aligned_cols=105  Identities=27%  Similarity=0.331  Sum_probs=86.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +.+.|++|.|....          ..+++|++++||+|++||.+.++|+|||||||+++.|+|.+.||+|+|.|+|.|+.
T Consensus         2 i~~~~~~~~f~~g~----------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVt   71 (263)
T COG1101           2 ISLSNATKTFFKGT----------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT   71 (263)
T ss_pred             cccccceeeecCCC----------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecc
Confidence            45677788875432          12457999999999999999999999999999999999999999999999999996


Q ss_pred             CcccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFAN  522 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~  522 (536)
                      .. ...+-...++-++|++  ...++||++||+.+...
T Consensus        72 k~-~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~  108 (263)
T COG1101          72 KK-SVAKRANLLARVFQDPLAGTAPELTIEENLALAES  108 (263)
T ss_pred             cC-CHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh
Confidence            43 2233334588899985  67999999999988653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.68  E-value=1.4e-16  Score=156.20  Aligned_cols=79  Identities=25%  Similarity=0.373  Sum_probs=70.7

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                      ++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++....      ...||+||++.+++.+|++||
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~~~v~q~~~l~~~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG------PDRMVVFQNYSLLPWLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC------hhheEEecCcccCCCCCHHHH
Confidence            57899999999999999999999999999999999999999999999884211      124899999999999999999


Q ss_pred             HHHHH
Q 009374          517 LHLFA  521 (536)
Q Consensus       517 L~~~~  521 (536)
                      +.+..
T Consensus        75 l~~~~   79 (230)
T TIGR01184        75 IALAV   79 (230)
T ss_pred             HHHHH
Confidence            98863

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.68  E-value=1e-16  Score=176.77  Aligned_cols=91  Identities=21%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ++.++++||+|.|++.              +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ 
T Consensus         4 ~~~l~i~~l~~~y~~~--------------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-   68 (556)
T PRK11819          4 QYIYTMNRVSKVVPPK--------------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-   68 (556)
T ss_pred             cEEEEEeeEEEEeCCC--------------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-
Confidence            3579999999999621              1599999999999999999999999999999999999999999999864 


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                 +..+|||||++.+++.+|++|++.+.
T Consensus        69 -----------~~~i~~v~Q~~~~~~~~tv~e~l~~~   94 (556)
T PRK11819         69 -----------GIKVGYLPQEPQLDPEKTVRENVEEG   94 (556)
T ss_pred             -----------CCEEEEEecCCCCCCCCcHHHHHHHh
Confidence                       13599999999999999999999863

>PTZ00243 ABC transporter; Provisional

Probab=99.67  E-value=1.1e-16  Score=193.42  Aligned_cols=111  Identities=17%  Similarity=0.341  Sum_probs=95.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++|++.+|++..             ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|+
T Consensus      1308 ~I~f~nVsf~Y~~~~-------------~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di 1374 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGL-------------PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREI 1374 (1560)
T ss_pred             eEEEEEEEEEeCCCC-------------CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence            599999999996531             1599999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      .+ .+.+++|+++|++||++.||+. |+||||..+.   ..+.+++.+.
T Consensus      1375 ~~-i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~---~~sdeeI~~A 1418 (1560)
T PTZ00243       1375 GA-YGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL---EASSAEVWAA 1418 (1560)
T ss_pred             cc-CCHHHHHhcceEECCCCccccc-cHHHHhCccc---CCCHHHHHHH
Confidence            63 4678899999999999999987 9999997542   2344555443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.67  E-value=1.2e-16  Score=193.38  Aligned_cols=112  Identities=20%  Similarity=0.292  Sum_probs=97.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++|++.+|++..             ..+|+|+||+|++||.+||+|++||||||++++|.|+++|++|+|.|||.|
T Consensus      1283 g~I~f~nVsf~Y~~~~-------------~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDL-------------DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred             CcEEEEEEEEEeCCCC-------------cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence            4699999999997531             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      +++ -+.+.+|+++|++||++.||+. |+||||..+.   ..+.+++.+.
T Consensus      1350 I~~-i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~~a 1394 (1522)
T TIGR00957      1350 IAK-IGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVWWA 1394 (1522)
T ss_pred             ccc-cCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---CCCHHHHHHH
Confidence            974 4678899999999999999997 9999997543   3455555443

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.67  E-value=1.6e-16  Score=175.09  Aligned_cols=89  Identities=21%  Similarity=0.247  Sum_probs=80.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.              +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.+++  
T Consensus         3 ~~i~~~nls~~~~~~--------------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--   66 (552)
T TIGR03719         3 YIYTMNRVSKVVPPK--------------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--   66 (552)
T ss_pred             EEEEEeeEEEecCCC--------------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--
Confidence            478999999999622              1599999999999999999999999999999999999999999999864  


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                                +..+||+||++.+++++|++||+.+
T Consensus        67 ----------~~~i~~v~Q~~~~~~~~tv~e~i~~   91 (552)
T TIGR03719        67 ----------GIKVGYLPQEPQLDPTKTVRENVEE   91 (552)
T ss_pred             ----------CCEEEEEeccCCCCCCCcHHHHHHH
Confidence                      1359999999999999999999986

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=2.8e-16  Score=173.90  Aligned_cols=118  Identities=23%  Similarity=0.323  Sum_probs=98.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEc
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIY  481 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~  481 (536)
                      ..+.+++++..-+++.          ++.++.|+|+|..+++||++|++||+||||||||++|+|..+.   .+|+|.+|
T Consensus        24 ~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN   93 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN   93 (613)
T ss_pred             ceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence            4577888887775531          1245799999999999999999999999999999999999874   79999999


Q ss_pred             CEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC---CChHhHhhhhC
Q 009374          482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG---LPLDSIKSVCA  536 (536)
Q Consensus       482 g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg---~~~~~~~~~v~  536 (536)
                      |+..    +.+..++..||+.|+|.+++.|||+|+|.+.+++|-   +++++.+++||
T Consensus        94 G~~~----~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~  147 (613)
T KOG0061|consen   94 GRPR----DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVE  147 (613)
T ss_pred             CccC----chhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence            9654    346788999999999999999999999999998873   24466665553

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=7.8e-17  Score=182.98  Aligned_cols=103  Identities=26%  Similarity=0.457  Sum_probs=93.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++++|+.+            +++.+++|+||.|++||+++|+|||||||||++++|.+++.|++|+|+|+|.
T Consensus       348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~  415 (1228)
T KOG0055|consen  348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGE  415 (1228)
T ss_pred             ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCc
Confidence            3469999999999874            3568999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      |++. -+.+..|++||+|.|+++||. .|++||+.+.
T Consensus       416 di~~-~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G  450 (1228)
T KOG0055|consen  416 DIRN-LNLKWLRSQIGLVSQEPVLFA-TTIRENIRYG  450 (1228)
T ss_pred             cchh-cchHHHHhhcCeeeechhhhc-ccHHHHHhcC
Confidence            9974 567788999999999999886 5999999874

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.67  E-value=3.5e-16  Score=166.24  Aligned_cols=119  Identities=18%  Similarity=0.284  Sum_probs=96.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.++++||+|.|..++.   .. .++++.+.||+|+||++++||++||+|++|||||||.|+|+|+.+|++|+|.++|.
T Consensus       278 ~~ll~V~~l~k~y~~~~~---~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~  353 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKG---LF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ  353 (539)
T ss_pred             CceeEeeeeeeeeccccc---cc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence            567999999999986431   11 12245678999999999999999999999999999999999999999999999998


Q ss_pred             ecCC-cccHHHhhcceEEEcCC--CCCCCCCCHHHHHHHHHHhcCC
Q 009374          484 SIRS-SVSMTNIQKSIGVCPQF--NILWDALSGEEHLHLFANIKGL  526 (536)
Q Consensus       484 ~i~~-~~~~~~~~~~ig~~pQ~--~~l~~~lTv~e~L~~~~~lkg~  526 (536)
                      +..- ..+....|+.+-+++|+  ..|.|.+||++.|.-...+++.
T Consensus       354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~  399 (539)
T COG1123         354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG  399 (539)
T ss_pred             ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc
Confidence            7321 22345567777777776  6899999999999988876654

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.67  E-value=1e-16  Score=192.42  Aligned_cols=114  Identities=17%  Similarity=0.268  Sum_probs=97.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----------
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----------  473 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----------  473 (536)
                      ..|+++||++.|+++.            +..+|+|+||++++||++||+|++||||||++++|.|+++|           
T Consensus      1164 g~I~f~nVsF~Y~~~~------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265       1164 GKIEIMDVNFRYISRP------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred             ceEEEEEEEEECCCCC------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence            3599999999997531            23599999999999999999999999999999999999998           


Q ss_pred             -------------------------------------------CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCC
Q 009374          474 -------------------------------------------TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDA  510 (536)
Q Consensus       474 -------------------------------------------t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~  510 (536)
                                                                 ++|+|+++|.|+++ .+.+.+|+++|||||++.||+ 
T Consensus      1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~-~~~~~lR~~i~~V~Qep~LF~- 1309 (1466)
T PTZ00265       1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD-YNLKDLRNLFSIVSQEPMLFN- 1309 (1466)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh-CCHHHHHhhccEeCCCCcccc-
Confidence                                                       69999999999963 467789999999999999996 


Q ss_pred             CCHHHHHHHHHHhcCCChHhHhhh
Q 009374          511 LSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       511 lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      .|++|||.+...  ..+.+++++.
T Consensus      1310 gTIreNI~~g~~--~at~eeI~~A 1331 (1466)
T PTZ00265       1310 MSIYENIKFGKE--DATREDVKRA 1331 (1466)
T ss_pred             ccHHHHHhcCCC--CCCHHHHHHH
Confidence            599999998632  3456666544

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.66  E-value=1.1e-16  Score=181.70  Aligned_cols=114  Identities=23%  Similarity=0.397  Sum_probs=102.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++|+++.|+.+            |++.+++|+||+|++||.+||+||+||||||.+.+|-+.+.|++|.|.|||+|+
T Consensus       987 ~I~~~~V~F~YPsR------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTR------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred             EEEEeeeEeeCCCC------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc
Confidence            59999999999864            456899999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ++ -+.+..|++||.|.|+|.||+. |++||+.+. ..+ ++.+|+.+.+
T Consensus      1055 k~-lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1055 KD-LNLKWLRKQIGLVSQEPVLFNG-TIRENIAYG-SEE-VSEEEIIEAA 1100 (1228)
T ss_pred             cc-CCHHHHHHhcceeccCchhhcc-cHHHHHhcc-CCC-CCHHHHHHHH
Confidence            74 5788999999999999999976 999999988 333 7888876654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.66  E-value=1.7e-16  Score=154.92  Aligned_cols=95  Identities=25%  Similarity=0.328  Sum_probs=77.9

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +.++++++.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        23 l~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   87 (224)
T cd03220          23 LGILGRKGEVGEF---------------WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS   87 (224)
T ss_pred             hhhhhhhhhcCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch
Confidence            5677888888653               6999999999999999999999999999999999999999999999998762


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      .      ..       +...+.+.+|++||+.+.....+.+.+
T Consensus        88 ~------~~-------~~~~~~~~~tv~enl~~~~~~~~~~~~  117 (224)
T cd03220          88 L------LG-------LGGGFNPELTGRENIYLNGRLLGLSRK  117 (224)
T ss_pred             h------hc-------ccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence            1      11       123455789999999988766665443

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=2.4e-16  Score=173.09  Aligned_cols=86  Identities=16%  Similarity=0.281  Sum_probs=79.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.   
T Consensus         2 l~i~~ls~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---   63 (530)
T PRK15064          2 LSTANITMQFGAK---------------PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---   63 (530)
T ss_pred             EEEEEEEEEeCCc---------------EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---
Confidence            7899999999642               5999999999999999999999999999999999999999999999862   


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                               +.+||+||+..+++++|++|++.+
T Consensus        64 ---------~~i~~~~q~~~~~~~~tv~e~l~~   87 (530)
T PRK15064         64 ---------ERLGKLRQDQFAFEEFTVLDTVIM   87 (530)
T ss_pred             ---------CEEEEEeccCCcCCCCcHHHHHHH
Confidence                     359999999999999999999976

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.65  E-value=2.5e-16  Score=173.49  Aligned_cols=95  Identities=20%  Similarity=0.303  Sum_probs=84.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|+++              ..+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus       322 ~i~~~~v~f~y~~~--------------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  387 (547)
T PRK10522        322 TLELRNVTFAYQDN--------------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV  387 (547)
T ss_pred             eEEEEEEEEEeCCC--------------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence            69999999999742              1489999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                      .+ .+.+.+|+++||+||++.+|+. |++||
T Consensus       388 ~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~n  416 (547)
T PRK10522        388 TA-EQPEDYRKLFSAVFTDFHLFDQ-LLGPE  416 (547)
T ss_pred             CC-CCHHHHhhheEEEecChhHHHH-hhccc
Confidence            63 4567789999999999999875 66665

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.65  E-value=1.7e-16  Score=149.58  Aligned_cols=79  Identities=29%  Similarity=0.550  Sum_probs=69.6

Q ss_pred             EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~  488 (536)
                      ++|++|.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. 
T Consensus         2 ~~~l~~~~~~~---------------~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-   65 (180)
T cd03214           2 VENLSVGYGGR---------------TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-   65 (180)
T ss_pred             eeEEEEEECCe---------------eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-
Confidence            67899999642               59999999999999999999999999999999999999999999999999853 


Q ss_pred             ccHHHhhcceEEEcC
Q 009374          489 VSMTNIQKSIGVCPQ  503 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ  503 (536)
                      .+....++.+||+||
T Consensus        66 ~~~~~~~~~i~~~~q   80 (180)
T cd03214          66 LSPKELARKIAYVPQ   80 (180)
T ss_pred             CCHHHHHHHHhHHHH
Confidence            233456678999999

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.64  E-value=5.2e-16  Score=171.18  Aligned_cols=95  Identities=22%  Similarity=0.247  Sum_probs=82.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|+++.|++.               .+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+++ 
T Consensus       322 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-  385 (556)
T PRK11819        322 DKVIEAENLSKSFGDR---------------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-  385 (556)
T ss_pred             CeEEEEEeEEEEECCe---------------eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence            3479999999999642               599999999999999999999999999999999999999999999843 


Q ss_pred             ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcC
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +           ..+||+||+. .+++++|++|++.+.....+
T Consensus       386 ~-----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~  417 (556)
T PRK11819        386 T-----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK  417 (556)
T ss_pred             c-----------eEEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence            2           1499999996 78899999999988654433

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.64  E-value=3.3e-16  Score=188.03  Aligned_cols=101  Identities=18%  Similarity=0.353  Sum_probs=89.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE-cCEe
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI-YGFS  484 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i-~g~~  484 (536)
                      .++++||++.|+++.            ++++++|+||++++||++||+|||||||||++++|+|+++|++|+|++ +|.+
T Consensus       382 ~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~  449 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK------------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN  449 (1466)
T ss_pred             cEEEEEEEEEcCCCC------------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc
Confidence            599999999997531            236999999999999999999999999999999999999999999999 5688


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.+ .+.+.+|+++||+||++.||+. |++||+.+.
T Consensus       450 i~~-~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g  483 (1466)
T PTZ00265        450 LKD-INLKWWRSKIGVVSQDPLLFSN-SIKNNIKYS  483 (1466)
T ss_pred             hhh-CCHHHHHHhccEecccccchhc-cHHHHHHhc
Confidence            753 3456788999999999999985 999999885

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.64  E-value=5.8e-16  Score=168.85  Aligned_cols=85  Identities=20%  Similarity=0.271  Sum_probs=75.0

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC---CCCCCCC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN---ILWDALS  512 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~---~l~~~lT  512 (536)
                      +++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++......+..++.+||+||++   .+++.+|
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            7999999999999999999999999999999999999999999999998853222234567899999995   6889999


Q ss_pred             HHHHHHHH
Q 009374          513 GEEHLHLF  520 (536)
Q Consensus       513 v~e~L~~~  520 (536)
                      ++||+.+.
T Consensus       347 v~e~l~~~  354 (501)
T PRK10762        347 VKENMSLT  354 (501)
T ss_pred             HHHHhhhh
Confidence            99999874

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.63  E-value=4.4e-16  Score=161.31  Aligned_cols=105  Identities=28%  Similarity=0.468  Sum_probs=93.7

Q ss_pred             CCCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (536)
Q Consensus       402 ~~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~  481 (536)
                      ++...+.++++...-++.+             ++.|+|+||++.+||.+|++||+|||||||-|+|.|..+|++|.|.+|
T Consensus       330 ~P~g~L~Ve~l~~~PPg~~-------------~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD  396 (580)
T COG4618         330 APQGALSVERLTAAPPGQK-------------KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD  396 (580)
T ss_pred             CCCceeeEeeeeecCCCCC-------------CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence            3455789999988665542             379999999999999999999999999999999999999999999999


Q ss_pred             CEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          482 GFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       482 g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      |.|++ +.+.++..++|||.||+-.||+. |+.||+.-|.
T Consensus       397 ga~l~-qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~  434 (580)
T COG4618         397 GADLR-QWDREQLGRHIGYLPQDVELFDG-TIAENIARFG  434 (580)
T ss_pred             chhhh-cCCHHHhccccCcCcccceecCC-cHHHHHHhcc
Confidence            99997 56788999999999999999998 9999997654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.63  E-value=5.1e-16  Score=168.91  Aligned_cols=97  Identities=20%  Similarity=0.220  Sum_probs=81.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~   67 (490)
T PRK10938          3 SLQISQGTFRLSDT---------------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI   67 (490)
T ss_pred             eEEEEeEEEEcCCe---------------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence            58999999999642               499999999999999999999999999999999999999999999999876


Q ss_pred             CCcccHHHhhcceEEEcCCCCC--C------CCCCHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNIL--W------DALSGEEHLH  518 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l--~------~~lTv~e~L~  518 (536)
                      .. .+....++.+|++||++.+  +      ..+|++|++.
T Consensus        68 ~~-~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  107 (490)
T PRK10938         68 TR-LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ  107 (490)
T ss_pred             cc-CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcc
Confidence            42 1233456679999998643  1      1578998874

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=9.9e-16  Score=168.16  Aligned_cols=89  Identities=22%  Similarity=0.288  Sum_probs=79.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. 
T Consensus       318 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-  381 (530)
T PRK15064        318 NALEVENLTKGFDNG---------------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-  381 (530)
T ss_pred             ceEEEEeeEEeeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-
Confidence            479999999999642               5999999999999999999999999999999999999999999998762 


Q ss_pred             cCCcccHHHhhcceEEEcCCCC--CCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNI--LWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~--l~~~lTv~e~L~~~  520 (536)
                                 +.+||+||+..  +++.+|++|++.++
T Consensus       382 -----------~~i~~~~q~~~~~~~~~~t~~~~~~~~  408 (530)
T PRK15064        382 -----------ANIGYYAQDHAYDFENDLTLFDWMSQW  408 (530)
T ss_pred             -----------eEEEEEcccccccCCCCCcHHHHHHHh
Confidence                       46999999863  66789999998764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.63  E-value=6.9e-16  Score=149.44  Aligned_cols=83  Identities=24%  Similarity=0.398  Sum_probs=70.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE-EcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~-i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      +++|+||++++||+++|+||||||||||+++|+|+.+|++|+|. ++|..+           .+|   |.+.+++.+|++
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-----------~~~---~~~~l~~~ltv~   67 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-----------PLG---ANSFILPGLTGE   67 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-----------ccc---cccccCCcCcHH
Confidence            79999999999999999999999999999999999999999997 766433           122   456689999999


Q ss_pred             HHHHHHHHhcCCChHhHh
Q 009374          515 EHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       515 e~L~~~~~lkg~~~~~~~  532 (536)
                      ||+.+++...+.+.+++.
T Consensus        68 enl~~~~~~~~~~~~~~~   85 (213)
T PRK15177         68 ENARMMASLYGLDGDEFS   85 (213)
T ss_pred             HHHHHHHHHcCCCHHHHH
Confidence            999998887776655443

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.63  E-value=1.3e-15  Score=153.50  Aligned_cols=85  Identities=20%  Similarity=0.333  Sum_probs=76.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++++++.  +.               .+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| 
T Consensus        37 ~~~l~i~nls~~--~~---------------~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-   98 (282)
T cd03291          37 DNNLFFSNLCLV--GA---------------PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-   98 (282)
T ss_pred             CCeEEEEEEEEe--cc---------------cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence            456999999985  21               599999999999999999999999999999999999999999999987 


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                   .+||+||++.+++. |++||+.+.
T Consensus        99 -------------~i~yv~q~~~l~~~-tv~enl~~~  121 (282)
T cd03291          99 -------------RISFSSQFSWIMPG-TIKENIIFG  121 (282)
T ss_pred             -------------EEEEEeCccccccc-CHHHHhhcc
Confidence                         28999999988875 999999863

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.63  E-value=6.3e-16  Score=170.57  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=86.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|+++..          .+..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus       336 ~~i~~~~v~f~y~~~~~----------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~  405 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEG----------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAA  405 (555)
T ss_pred             ceEEEEEEEEEeCCCCC----------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence            35999999999975310          01258999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHL  517 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L  517 (536)
                      +++ .+.++.|+.+++++|++.+|++ |++||+
T Consensus       406 i~~-~~~~~~~~~i~~v~q~~~lf~~-ti~~n~  436 (555)
T TIGR01194       406 VSA-DSRDDYRDLFSAIFADFHLFDD-LIGPDE  436 (555)
T ss_pred             CCC-CCHHHHHhhCcEEccChhhhhh-hhhccc
Confidence            964 3556788999999999999976 677774

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.62  E-value=4.6e-16  Score=141.50  Aligned_cols=112  Identities=23%  Similarity=0.267  Sum_probs=89.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|.....      ..++..+.||+.+||++++||..|++|.||||||||-+||+|+++||+|+|.+||+.+
T Consensus         4 LLeV~nLsKtF~~~~~------lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L   77 (267)
T COG4167           4 LLEVRNLSKTFRYRTG------LFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL   77 (267)
T ss_pred             hhhhhhhhhhhhhhhh------hhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence            4688999999976432      1234567899999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhc
Q 009374          486 RSSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lk  524 (536)
                      .- .+.....++|-+++|++  .+.|.+.+.+-|....++.
T Consensus        78 ~~-~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~  117 (267)
T COG4167          78 HF-GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN  117 (267)
T ss_pred             cc-cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence            42 23333346799999985  5677777777777766554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.62  E-value=1.2e-15  Score=168.29  Aligned_cols=95  Identities=22%  Similarity=0.234  Sum_probs=82.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|+++.|++.               .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ 
T Consensus       320 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-  383 (552)
T TIGR03719       320 DKVIEAENLSKGFGDK---------------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-  383 (552)
T ss_pred             CeEEEEeeEEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence            3479999999999642               599999999999999999999999999999999999999999999843 


Q ss_pred             ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcC
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg  525 (536)
                      +           ..+||+||+. .+++.+|++|++.+.....+
T Consensus       384 ~-----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~  415 (552)
T TIGR03719       384 T-----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ  415 (552)
T ss_pred             c-----------eEEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence            2           1599999986 58889999999988654333

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.1e-15  Score=166.37  Aligned_cols=95  Identities=18%  Similarity=0.267  Sum_probs=81.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.+  .               .+++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus       249 ~~i~~~~l~~~~--~---------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~  311 (491)
T PRK10982        249 VILEVRNLTSLR--Q---------------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK  311 (491)
T ss_pred             cEEEEeCccccc--C---------------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEE
Confidence            468999998864  1               48999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCC---CCCCCCCHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEH  516 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~  516 (536)
                      +......+..++.+||+||+.   .+++++|+.|+
T Consensus       312 i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~  346 (491)
T PRK10982        312 INNHNANEAINHGFALVTEERRSTGIYAYLDIGFN  346 (491)
T ss_pred             CCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence            853222334567899999984   57899988777

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.62  E-value=8e-16  Score=167.35  Aligned_cols=100  Identities=23%  Similarity=0.295  Sum_probs=81.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcC
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYG  482 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g  482 (536)
                      .+.++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|+++|
T Consensus       258 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g  322 (490)
T PRK10938        258 EPRIVLNNGVVSYNDR---------------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFG  322 (490)
T ss_pred             CceEEEeceEEEECCe---------------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEec
Confidence            3579999999999642               599999999999999999999999999999999998876 699999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCC--CCHHHHHH
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDA--LSGEEHLH  518 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~--lTv~e~L~  518 (536)
                      .++.........++.+||+||++.++..  .|++|.+.
T Consensus       323 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~  360 (490)
T PRK10938        323 RRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVIL  360 (490)
T ss_pred             ccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHH
Confidence            8763222233456789999998766443  56766654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.62  E-value=1.3e-15  Score=184.17  Aligned_cols=100  Identities=26%  Similarity=0.423  Sum_probs=90.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++||+.+|++..             ..+|+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.|+|.|
T Consensus      1216 g~I~f~nVs~~Y~~~~-------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~d 1281 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAG-------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVS 1281 (1490)
T ss_pred             CeEEEEEEEEEeCCCC-------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEE
Confidence            4699999999997531             269999999999999999999999999999999999997 89999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.. -+.+..|++++|+||++.||+. |+||||..+
T Consensus      1282 i~~-i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~ 1315 (1490)
T TIGR01271      1282 WNS-VTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY 1315 (1490)
T ss_pred             ccc-CCHHHHHhceEEEeCCCccCcc-CHHHHhCcc
Confidence            963 4677899999999999999987 999999654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.5e-15  Score=142.06  Aligned_cols=104  Identities=22%  Similarity=0.354  Sum_probs=92.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~G~i~i~g~  483 (536)
                      .++++||+..-.++              +.+|+++||+|++||+.+|+||||||||||.+.|+|..  .+|+|+|.++|+
T Consensus         3 ~L~I~dLhv~v~~~--------------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge   68 (251)
T COG0396           3 MLEIKDLHVEVEGK--------------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE   68 (251)
T ss_pred             eeEEeeeEEEecCc--------------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc
Confidence            57899999888652              26999999999999999999999999999999999985  899999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      ||.....-+++|..|..-+|.+.=++..|+.+-|+...+.
T Consensus        69 dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~  108 (251)
T COG0396          69 DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA  108 (251)
T ss_pred             ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh
Confidence            9976555567899999999999999999999999876554

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.62  E-value=5.3e-16  Score=136.89  Aligned_cols=104  Identities=25%  Similarity=0.409  Sum_probs=88.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCE
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGF  483 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~  483 (536)
                      +.++|++.+-+++               ..+.++|++|.+|||+.|.||+|+|||||++-+.|.+.+.   +|++.++++
T Consensus         3 l~l~nvsl~l~g~---------------cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~   67 (213)
T COG4136           3 LCLKNVSLRLPGS---------------CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ   67 (213)
T ss_pred             eeeeeeeecCCCc---------------eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe
Confidence            5677887666553               4899999999999999999999999999999999988763   699999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH--HHHhcCCCh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL--FANIKGLPL  528 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~--~~~lkg~~~  528 (536)
                      ++.   .....+|++|+.+|++.|||+++|.|||.|  .+.+||-.+
T Consensus        68 ~l~---~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aR  111 (213)
T COG4136          68 RLD---MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNAR  111 (213)
T ss_pred             ecc---ccchhhhheeeeecccccccccccccceEEecCcccccHHH
Confidence            884   245668899999999999999999999976  567787543

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.61  E-value=3.2e-15  Score=159.59  Aligned_cols=101  Identities=22%  Similarity=0.269  Sum_probs=81.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++||++.|++..            .+.+|+|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.+
T Consensus        20 ~mL~lknL~~~~~~~~------------~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~   87 (549)
T PRK13545         20 PFDKLKDLFFRSKDGE------------YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA   87 (549)
T ss_pred             ceeEEEEEEEecCCCc------------cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence            4688888888886531            2259999999999999999999999999999999999999999999999965


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      .           .++   +...+.+.+|++||+.+.+...+.+.++.
T Consensus        88 ~-----------~i~---~~~~l~~~lTV~EnL~l~~~~~~~~~~e~  120 (549)
T PRK13545         88 A-----------LIA---ISSGLNGQLTGIENIELKGLMMGLTKEKI  120 (549)
T ss_pred             e-----------eEE---eccccCCCCcHHHHHHhhhhhcCCCHHHH
Confidence            2           122   23456778999999998776666654443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.2e-15  Score=166.43  Aligned_cols=86  Identities=20%  Similarity=0.287  Sum_probs=75.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC---CCCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN---ILWDAL  511 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~---~l~~~l  511 (536)
                      .+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++......+..++.+||+||++   .+++.+
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            38999999999999999999999999999999999999999999999998743222344567899999985   489999


Q ss_pred             CHHHHHHHH
Q 009374          512 SGEEHLHLF  520 (536)
Q Consensus       512 Tv~e~L~~~  520 (536)
                      |+.|++.+.
T Consensus       347 tv~e~l~~~  355 (501)
T PRK11288        347 SVADNINIS  355 (501)
T ss_pred             CHHHHhccc
Confidence            999999864

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.3e-16  Score=160.62  Aligned_cols=100  Identities=26%  Similarity=0.441  Sum_probs=90.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++++|+++.             .+|++|+||++++||-++|+|++||||||++..|+|.++|++|+|.++|.++
T Consensus       336 ~l~~~~vsF~y~~~~-------------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~  402 (573)
T COG4987         336 ALELRNVSFTYPGQQ-------------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI  402 (573)
T ss_pred             eeeeccceeecCCCc-------------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence            789999999998753             2699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. -+.+++|+.+++++|...||.. |+|+||.+-
T Consensus       403 ~~-l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA  435 (573)
T COG4987         403 AS-LDEQALRETISVLTQRVHLFSG-TLRDNLRLA  435 (573)
T ss_pred             hh-CChhhHHHHHhhhccchHHHHH-HHHHHHhhc
Confidence            63 2334578899999999999987 999999774

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.60  E-value=1.9e-15  Score=181.19  Aligned_cols=90  Identities=18%  Similarity=0.189  Sum_probs=79.3

Q ss_pred             CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc----ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCC
Q 009374          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW  508 (536)
Q Consensus       433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~----~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~  508 (536)
                      .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+.    +|++|+|.++|.++..  .....|+.+||++|+|.++
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~--~~~~~r~~i~yv~Q~d~~~  150 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE--IKKHYRGDVVYNAETDVHF  150 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHH--HHhhcCceeEEeccccccC
Confidence            357999999999999999999999999999999999986    5799999999998731  1234567799999999999


Q ss_pred             CCCCHHHHHHHHHHhc
Q 009374          509 DALSGEEHLHLFANIK  524 (536)
Q Consensus       509 ~~lTv~e~L~~~~~lk  524 (536)
                      +.+||+|+|.+.++++
T Consensus       151 ~~lTV~E~l~f~~~~~  166 (1394)
T TIGR00956       151 PHLTVGETLDFAARCK  166 (1394)
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999987765

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.60  E-value=2.2e-15  Score=168.66  Aligned_cols=90  Identities=19%  Similarity=0.298  Sum_probs=80.0

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++||+|.|++.               .+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+ |.
T Consensus       317 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~  380 (635)
T PRK11147        317 KIVFEMENVNYQIDGK---------------QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT  380 (635)
T ss_pred             CceEEEeeeEEEECCe---------------EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC
Confidence            3479999999999642               5999999999999999999999999999999999999999999998 53


Q ss_pred             ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~  520 (536)
                      ++           .+||++|+. .+++++||.|++.+.
T Consensus       381 ~~-----------~i~y~~q~~~~l~~~~tv~e~l~~~  407 (635)
T PRK11147        381 KL-----------EVAYFDQHRAELDPEKTVMDNLAEG  407 (635)
T ss_pred             Cc-----------EEEEEeCcccccCCCCCHHHHHHhh
Confidence            22           499999985 689999999999874

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.60  E-value=2.3e-15  Score=136.74  Aligned_cols=70  Identities=27%  Similarity=0.370  Sum_probs=63.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.               .+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|.   
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---   62 (144)
T cd03221           1 IELENLSKTYGGK---------------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---   62 (144)
T ss_pred             CEEEEEEEEECCc---------------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---
Confidence            3678999999642               5999999999999999999999999999999999999999999999883   


Q ss_pred             CcccHHHhhcceEEEcC
Q 009374          487 SSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ  503 (536)
                               +.++|+||
T Consensus        63 ---------~~i~~~~~   70 (144)
T cd03221          63 ---------VKIGYFEQ   70 (144)
T ss_pred             ---------EEEEEEcc
Confidence                     35888888

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.60  E-value=2e-15  Score=180.80  Aligned_cols=92  Identities=23%  Similarity=0.315  Sum_probs=82.2

Q ss_pred             CCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374          430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       430 ~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~  506 (536)
                      |+..+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+   +|+|.++|+++..   . ..|+.+||++|+|.
T Consensus       174 k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~-~~~~~i~yv~Q~d~  249 (1470)
T PLN03140        174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---F-VPRKTSAYISQNDV  249 (1470)
T ss_pred             CCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---h-cccceeEEeccccc
Confidence            334567999999999999999999999999999999999999998   9999999998742   1 23678999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcC
Q 009374          507 LWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       507 l~~~lTv~e~L~~~~~lkg  525 (536)
                      ++++|||+|+|.|.++++|
T Consensus       250 ~~~~lTV~EtL~f~a~~~~  268 (1470)
T PLN03140        250 HVGVMTVKETLDFSARCQG  268 (1470)
T ss_pred             CCCcCcHHHHHHHHHHhcC
Confidence            9999999999999988775

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.59  E-value=3e-15  Score=167.96  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|+++              ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|++.+++  
T Consensus       450 ~~i~~~nv~~~~~~~--------------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--  513 (659)
T TIGR00954       450 NGIKFENIPLVTPNG--------------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--  513 (659)
T ss_pred             CeEEEEeeEEECCCC--------------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence            469999999999642              1599999999999999999999999999999999999999999998653  


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                                ++++|||||++.+++. |++||+.+..
T Consensus       514 ----------~~~i~~v~Q~~~l~~~-tv~eni~~~~  539 (659)
T TIGR00954       514 ----------KGKLFYVPQRPYMTLG-TLRDQIIYPD  539 (659)
T ss_pred             ----------CCcEEEECCCCCCCCc-CHHHHHhcCC
Confidence                      4579999999999987 9999998743

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.59  E-value=3.1e-15  Score=163.41  Aligned_cols=96  Identities=17%  Similarity=0.301  Sum_probs=81.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++                    .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus       267 ~~l~~~~l~~--------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~  326 (510)
T PRK15439        267 PVLTVEDLTG--------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKE  326 (510)
T ss_pred             ceEEEeCCCC--------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEE
Confidence            4688998872                    16999999999999999999999999999999999999999999999998


Q ss_pred             cCCcccHHHhhcceEEEcCCC---CCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFN---ILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~---~l~~~lTv~e~L~~~  520 (536)
                      +......+..++.+||+||+.   .+++.+|+.|++...
T Consensus       327 i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~  365 (510)
T PRK15439        327 INALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCAL  365 (510)
T ss_pred             CCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhh
Confidence            853222223456899999984   589999999998643

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.59  E-value=5.8e-15  Score=146.88  Aligned_cols=108  Identities=21%  Similarity=0.413  Sum_probs=90.2

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-c----CccEEEEc
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-V----TGGDALIY  481 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-p----t~G~i~i~  481 (536)
                      ++++||+..|....           +.+.||+|+||++++||++||+|.+|||||||.+.|.|+++ |    ++|+|.++
T Consensus         2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~   70 (316)
T COG0444           2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD   70 (316)
T ss_pred             ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEEC
Confidence            57899999997532           24579999999999999999999999999999999999997 3    67999999


Q ss_pred             CEecCCccc--HHHhh-cceEEEcCC--CCCCCCCCHHHHHHHHHHhcC
Q 009374          482 GFSIRSSVS--MTNIQ-KSIGVCPQF--NILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       482 g~~i~~~~~--~~~~~-~~ig~~pQ~--~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      |.|+.+..+  ++++| +.|+++||+  +.|.|-+|+.+++.-..+.++
T Consensus        71 g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~  119 (316)
T COG0444          71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG  119 (316)
T ss_pred             CcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh
Confidence            998864332  33444 579999998  689999999999987766543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.57  E-value=6.7e-15  Score=135.51  Aligned_cols=85  Identities=31%  Similarity=0.608  Sum_probs=72.6

Q ss_pred             EeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc
Q 009374          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       409 ~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~  488 (536)
                      ++++++.|++.               .+++++|+++++||+++|+|+|||||||++++|+|+++|++|+++++|.++.. 
T Consensus         2 ~~~~~~~~~~~---------------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~-   65 (157)
T cd00267           2 IENLSFRYGGR---------------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK-   65 (157)
T ss_pred             eEEEEEEeCCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-
Confidence            57888888542               59999999999999999999999999999999999999999999999998742 


Q ss_pred             ccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          489 VSMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                      ....+.++.++|+||       |+..|-
T Consensus        66 ~~~~~~~~~i~~~~q-------lS~G~~   86 (157)
T cd00267          66 LPLEELRRRIGYVPQ-------LSGGQR   86 (157)
T ss_pred             CCHHHHHhceEEEee-------CCHHHH
Confidence            224456788999999       666554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.55  E-value=5.8e-15  Score=141.13  Aligned_cols=98  Identities=22%  Similarity=0.356  Sum_probs=83.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...|+++|++.+|+++               ++|+|+|++|++||-.+|+|+||||||||+++++|..+|++|.+.+.|+
T Consensus        29 ~~li~l~~v~v~r~gk---------------~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~   93 (257)
T COG1119          29 EPLIELKNVSVRRNGK---------------KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR   93 (257)
T ss_pred             cceEEecceEEEECCE---------------eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeee
Confidence            4579999999999764               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccH-HHhhcceEEEcCC--CCCCCCCCHHHHH
Q 009374          484 SIRSSVSM-TNIQKSIGVCPQF--NILWDALSGEEHL  517 (536)
Q Consensus       484 ~i~~~~~~-~~~~~~ig~~pQ~--~~l~~~lTv~e~L  517 (536)
                      ...+ .+. .++|++||+|.-.  ..+-++.+|+|-+
T Consensus        94 ~~G~-~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvV  129 (257)
T COG1119          94 RFGK-GETIFELRKRIGLVSSELHERFRVRETVRDVV  129 (257)
T ss_pred             eccC-CcchHHHHHHhCccCHHHHhhcccccccceee
Confidence            8764 344 7899999999752  3444556666654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.55  E-value=1.3e-14  Score=143.46  Aligned_cols=74  Identities=24%  Similarity=0.307  Sum_probs=65.4

Q ss_pred             eeeceeEEEe-----cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCC
Q 009374          436 AIKGLWVNIA-----KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDA  510 (536)
Q Consensus       436 al~~lsl~v~-----~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~  510 (536)
                      .+++++|++.     +||+++|+|+||||||||+++|+|+.+|++|+|.++|.             .++|+||+......
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~~~   75 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKADYE   75 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCCCC
Confidence            6677777776     79999999999999999999999999999999998873             58999999888888


Q ss_pred             CCHHHHHHHHHH
Q 009374          511 LSGEEHLHLFAN  522 (536)
Q Consensus       511 lTv~e~L~~~~~  522 (536)
                      +|++|++.....
T Consensus        76 ~tv~e~l~~~~~   87 (246)
T cd03237          76 GTVRDLLSSITK   87 (246)
T ss_pred             CCHHHHHHHHhh
Confidence            999999976543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.54  E-value=9.6e-15  Score=169.66  Aligned_cols=102  Identities=21%  Similarity=0.370  Sum_probs=92.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +-.|+++|++.+|+...             -.+|+|+||+|++||.+|++|..||||||++++|-++..|++|+|.|||.
T Consensus      1136 ~G~I~f~~~~~RYrp~l-------------p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNL-------------PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred             CCeEEEEEeEEEeCCCC-------------cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence            45799999999997542             15999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ||.+ -...+.|+++++.||++.||.. |+|+||.=+
T Consensus      1203 dI~~-igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf 1237 (1381)
T KOG0054|consen 1203 DISK-IGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF 1237 (1381)
T ss_pred             eccc-ccHHHHHhcCeeeCCCCceecC-ccccccCcc
Confidence            9974 5788999999999999999988 999999443

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=5.2e-15  Score=143.09  Aligned_cols=83  Identities=20%  Similarity=0.295  Sum_probs=71.9

Q ss_pred             ceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc---ccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS---VSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~---~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      +++|+.+...+++|-|++||||||++|||+|+.+|+.|.|.+||+-+.+.   -....-+|++||++|+..|||++||+.
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg   95 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG   95 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence            47888888899999999999999999999999999999999999865321   122345788999999999999999999


Q ss_pred             HHHHHH
Q 009374          516 HLHLFA  521 (536)
Q Consensus       516 ~L~~~~  521 (536)
                      ||.+..
T Consensus        96 NL~YG~  101 (352)
T COG4148          96 NLRYGM  101 (352)
T ss_pred             chhhhh
Confidence            998754

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.53  E-value=1.7e-14  Score=135.29  Aligned_cols=74  Identities=28%  Similarity=0.364  Sum_probs=62.4

Q ss_pred             eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc
Q 009374          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV  489 (536)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~  489 (536)
                      .|++|.|++.               .+++++ +++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+     
T Consensus         4 ~~l~~~~~~~---------------~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----   62 (177)
T cd03222           4 PDCVKRYGVF---------------FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----   62 (177)
T ss_pred             CCeEEEECCE---------------EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----
Confidence            4788999642               578884 9999999999999999999999999999999999999998843     


Q ss_pred             cHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          490 SMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       490 ~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                              +||+||+..    |+..|.
T Consensus        63 --------i~~~~q~~~----LSgGq~   77 (177)
T cd03222          63 --------PVYKPQYID----LSGGEL   77 (177)
T ss_pred             --------EEEEcccCC----CCHHHH
Confidence                    678888754    565443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.53  E-value=3.1e-14  Score=157.33  Aligned_cols=88  Identities=23%  Similarity=0.242  Sum_probs=78.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++                ..++++||++++||++||+|+||||||||+++|+|+.+|++|+|.++  
T Consensus       338 ~~~l~~~~ls~~~~~----------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--  399 (590)
T PRK13409        338 ETLVEYPDLTKKLGD----------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--  399 (590)
T ss_pred             ceEEEEcceEEEECC----------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--
Confidence            346999999999953                25899999999999999999999999999999999999999999874  


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                       +           .+||+||+..+.+++||+|++.+..
T Consensus       400 -~-----------~i~y~~Q~~~~~~~~tv~e~l~~~~  425 (590)
T PRK13409        400 -L-----------KISYKPQYIKPDYDGTVEDLLRSIT  425 (590)
T ss_pred             -e-----------eEEEecccccCCCCCcHHHHHHHHh
Confidence             1           4899999998899999999998753

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.52  E-value=6.5e-14  Score=149.07  Aligned_cols=119  Identities=16%  Similarity=0.273  Sum_probs=95.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC----ccEEEE
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALI  480 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt----~G~i~i  480 (536)
                      ..++++||++.|....           ..+.||+|+||++.+||++||+|.+||||||+.+.|.|++++.    +|+|.+
T Consensus         4 ~lL~V~nL~v~~~~~~-----------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~   72 (539)
T COG1123           4 PLLEVENLTVEFATDG-----------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVIL   72 (539)
T ss_pred             ceEEEeceEEEEecCC-----------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEE
Confidence            3789999999998642           2357999999999999999999999999999999999999887    899999


Q ss_pred             cCEecCCcc--cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHHhcC-CChHhHhhh
Q 009374          481 YGFSIRSSV--SMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLFANIKG-LPLDSIKSV  534 (536)
Q Consensus       481 ~g~~i~~~~--~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg-~~~~~~~~~  534 (536)
                      +|.|+....  +++++| +.|+|+||++  .|-|-+|+.+++.--.++++ .++++.+++
T Consensus        73 ~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~  132 (539)
T COG1123          73 DGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR  132 (539)
T ss_pred             CCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHH
Confidence            999875322  234444 6799999984  56777999999987666665 445554443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.51  E-value=3.3e-14  Score=158.98  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=76.0

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|++|.|++.               .+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++.
T Consensus       310 ~~~l~~~~l~~~y~~~---------------~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~  374 (638)
T PRK10636        310 NPLLKMEKVSAGYGDR---------------IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG  374 (638)
T ss_pred             CceEEEEeeEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC
Confidence            3479999999999642               5999999999999999999999999999999999999999999998631


Q ss_pred             ecCCcccHHHhhcceEEEcCCC--CCCCCCCHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN--ILWDALSGEEHLH  518 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~  518 (536)
                                  ..+||++|+.  .+.+..|+.+++.
T Consensus       375 ------------~~igy~~Q~~~~~l~~~~~~~~~~~  399 (638)
T PRK10636        375 ------------IKLGYFAQHQLEFLRADESPLQHLA  399 (638)
T ss_pred             ------------EEEEEecCcchhhCCccchHHHHHH
Confidence                        2599999974  4667778888764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.51  E-value=2.4e-14  Score=139.62  Aligned_cols=73  Identities=32%  Similarity=0.393  Sum_probs=64.0

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC--CCCHHHHHHH
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD--ALSGEEHLHL  519 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~--~lTv~e~L~~  519 (536)
                      |++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.      ..++.+||+||++.++.  .+|++|++.+
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~------~~~~~i~~v~q~~~~~~~~~~tv~~~l~~   74 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG------KGWRHIGYVPQRHEFAWDFPISVAHTVMS   74 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch------HhhCcEEEecccccccCCCCccHHHHHHh
Confidence            568899999999999999999999999999999999999998762      24678999999987643  4899999976


Q ss_pred             H
Q 009374          520 F  520 (536)
Q Consensus       520 ~  520 (536)
                      .
T Consensus        75 ~   75 (223)
T TIGR03771        75 G   75 (223)
T ss_pred             c
Confidence            4

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.50  E-value=2.8e-14  Score=147.00  Aligned_cols=76  Identities=25%  Similarity=0.417  Sum_probs=65.6

Q ss_pred             EeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       452 LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      |+||||||||||+++|+|+.+|++|+|.++|.++..   ....++.+||+||+..+++++|++||+.+..+.++.+.++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~---~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~   76 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN---VPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE   76 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC---CCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence            689999999999999999999999999999999842   1234678999999999999999999999987766665443

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.50  E-value=4.8e-14  Score=157.68  Aligned_cols=62  Identities=23%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ++++||+|.|++.               .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus         2 i~i~nls~~~g~~---------------~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~   63 (638)
T PRK10636          2 IVFSSLQIRRGVR---------------VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN   63 (638)
T ss_pred             EEEEEEEEEeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence            7899999999653               5999999999999999999999999999999999999999999999873

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.50  E-value=3.8e-14  Score=138.19  Aligned_cols=76  Identities=26%  Similarity=0.399  Sum_probs=65.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||+|.|..+..     + ++...+.|||||||+|++||++||+|.|||||||+-|+|.|+++||+|+|+++|.+
T Consensus         3 ~ll~v~~l~k~f~~~~~-----~-~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~   76 (268)
T COG4608           3 PLLEVKNLKKYFPVGKG-----F-GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD   76 (268)
T ss_pred             ceEEEeccEEEEecccc-----c-CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence            46899999999975421     0 11224689999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 009374          485 IR  486 (536)
Q Consensus       485 i~  486 (536)
                      +.
T Consensus        77 i~   78 (268)
T COG4608          77 IT   78 (268)
T ss_pred             hh
Confidence            74

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.1e-14  Score=129.31  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=96.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe-
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS-  484 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~-  484 (536)
                      .+.++|++|+|.=...        ..-..++++++||+|+.|||++|=||+||||||++++|-|.+.|++|+|.+.-.. 
T Consensus         4 ~l~v~~~~KtFtlH~q--------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~   75 (235)
T COG4778           4 PLNVSNVSKTFTLHQQ--------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE   75 (235)
T ss_pred             eeeeecchhheEeeec--------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc
Confidence            4788999999853211        1113468999999999999999999999999999999999999999999985432 


Q ss_pred             -c--CC--cccHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          485 -I--RS--SVSMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       485 -i--~~--~~~~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                       +  ..  ..+.-++ |+.|||+.|+--..|.....|-+.-...-+|++++..++.+
T Consensus        76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a  132 (235)
T COG4778          76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKA  132 (235)
T ss_pred             hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHH
Confidence             2  11  1222334 46799999999999999999999888888999988766543

>PLN03073 ABC transporter F family; Provisional

Probab=99.50  E-value=1e-13  Score=156.11  Aligned_cols=86  Identities=22%  Similarity=0.321  Sum_probs=73.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++.              ..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+++  
T Consensus       507 ~~L~~~~ls~~y~~~--------------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--  570 (718)
T PLN03073        507 PIISFSDASFGYPGG--------------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--  570 (718)
T ss_pred             ceEEEEeeEEEeCCC--------------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--
Confidence            579999999999642              1489999999999999999999999999999999999999999998754  


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH  518 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~  518 (536)
                                +..+||+||+.  .+.+++.++..
T Consensus       571 ----------~~~igyv~Q~~--~~~l~~~~~~~  592 (718)
T PLN03073        571 ----------KVRMAVFSQHH--VDGLDLSSNPL  592 (718)
T ss_pred             ----------ceeEEEEeccc--cccCCcchhHH
Confidence                      23599999985  35566666643

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.49  E-value=2.5e-14  Score=142.15  Aligned_cols=93  Identities=23%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE----------
Q 009374          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL----------  479 (536)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~----------  479 (536)
                      .+++|+|++.              +.+++|+|+ +.+||+++|+|+||||||||+++|+|+++|++|+|.          
T Consensus         4 ~~~~~~y~~~--------------~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~   68 (255)
T cd03236           4 DEPVHRYGPN--------------SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILD   68 (255)
T ss_pred             cCcceeecCc--------------chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhh
Confidence            3678899542              149999994 999999999999999999999999999999999996          


Q ss_pred             -EcCEecCCcccHHHhh---cceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          480 -IYGFSIRSSVSMTNIQ---KSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       480 -i~g~~i~~~~~~~~~~---~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                       ++|.++.+.  ..+.+   ..+++.+|+..+++. ++.+++...
T Consensus        69 ~~~g~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~  110 (255)
T cd03236          69 EFRGSELQNY--FTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGEL  110 (255)
T ss_pred             hccCchhhhh--hHHhhhcccceeeecchhccCch-HHHHHHHHH
Confidence             778776321  12222   247999999888874 777777654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.47  E-value=1.3e-13  Score=148.95  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=78.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++++++.|+++               ..++++|+++.+|+++||+|+|||||||||++|+|...|++|+|...+.  
T Consensus         3 ~i~~~~ls~~~g~~---------------~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--   65 (530)
T COG0488           3 MITLENLSLAYGDR---------------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--   65 (530)
T ss_pred             eEEEeeeEEeeCCc---------------eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--
Confidence            58999999999654               6999999999999999999999999999999999999999999987541  


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                                -++||.+|+..+.+..||.+.+.-
T Consensus        66 ----------~~v~~l~Q~~~~~~~~tv~~~v~~   89 (530)
T COG0488          66 ----------LRVGYLSQEPPLDPEKTVLDYVIE   89 (530)
T ss_pred             ----------ceEEEeCCCCCcCCCccHHHHHHh
Confidence                      249999999999999999997654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.46  E-value=7.1e-14  Score=118.91  Aligned_cols=75  Identities=17%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .|+++++|++++||+++|+||||||||||++++.      +|++.++|.|+.. .+.++.++..+++||+  +++ -|++
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~-~~~~~~~~~~~~~~q~--lf~-~ti~   72 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE-IREDSKDELIGRNPEL--GLE-IRLR   72 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH-hhhhhcCCEEEEechh--cch-hhHH
Confidence            6999999999999999999999999999999986      7999999999842 2233456667888887  444 4899


Q ss_pred             HHHHH
Q 009374          515 EHLHL  519 (536)
Q Consensus       515 e~L~~  519 (536)
                      |||.+
T Consensus        73 ~Ni~~   77 (107)
T cd00820          73 LNIFL   77 (107)
T ss_pred             hhcee
Confidence            99987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.45  E-value=2.1e-13  Score=152.79  Aligned_cols=62  Identities=26%  Similarity=0.452  Sum_probs=58.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .++++|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|
T Consensus         3 ~l~i~~ls~~~~~~---------------~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~   64 (635)
T PRK11147          3 LISIHGAWLSFSDA---------------PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ   64 (635)
T ss_pred             EEEEeeEEEEeCCc---------------eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence            58999999999653               599999999999999999999999999999999999999999999986

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.44  E-value=2.4e-13  Score=164.96  Aligned_cols=87  Identities=20%  Similarity=0.285  Sum_probs=78.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++..             ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|   
T Consensus       636 ~i~~~~~~~~~~~~~-------------~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---  699 (1522)
T TIGR00957       636 SITVHNATFTWARDL-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---  699 (1522)
T ss_pred             cEEEEEeEEEcCCCC-------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence            699999999996431             2599999999999999999999999999999999999999999999876   


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                 ++|||||++.+++ .|++||+.+.
T Consensus       700 -----------~i~yv~Q~~~l~~-~Ti~eNI~~g  722 (1522)
T TIGR00957       700 -----------SVAYVPQQAWIQN-DSLRENILFG  722 (1522)
T ss_pred             -----------EEEEEcCCccccC-CcHHHHhhcC
Confidence                       3899999999875 6999999875

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.44  E-value=6.8e-14  Score=143.05  Aligned_cols=271  Identities=22%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             eeecCCHHHHHHHHHcCCCcceEEEEEecCCCC-------eeEEEEEEccccccCCCCCCCCccchhhHHHHHHHHHHHH
Q 009374           14 VMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-------TISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIAR   86 (536)
Q Consensus        14 ~~~f~s~~~~~~~~~~~~~~~~~av~F~~~~~~-------~~~Y~i~~n~~~~~~~~~~~~~~~~~~~~lq~ai~~ai~~   86 (536)
                      ...++|++++++.+.++  ...+++++++....       ..++++.+|....           .....++.++++ +.+
T Consensus        60 ~~~~~~~~~~~~~~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-l~~  125 (344)
T PF12698_consen   60 VVEYDSEEEAKDALKNG--KIDAIIVIPKNFSQDLLSSGESPNITVYINSSNP-----------HSSQIIQNALSS-LLQ  125 (344)
T ss_dssp             EEECS-HHHHHHHHHHH--T-SEEEEE-TTCCCHCH-TT--ECCEEEESSSSH-----------HHHHHHHHHHHH-HHH
T ss_pred             eeeeCCHHHHHHHHHhC--CCcEEEEcCccccccccccCCcceEEEEeecccc-----------hhhhhhhccccc-cch
Confidence            56899999999988765  34567787655432       2234444443221           111344555555 555


Q ss_pred             HHhCCC----C---cceeeeeeccCCCchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHhCcChHHH
Q 009374           87 SLVGDP----N---FSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAY  159 (536)
Q Consensus        87 ~~~~~~----~---~~~~~~~~~~p~p~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~iV~EKe~~~k~~m~~mGl~~~~y  159 (536)
                      ......    .   ...++..+..|.... ..+....+.+.+++...++++......+++|||+|+++.|+++|++...|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~  204 (344)
T PF12698_consen  126 QLNASSEGKSAIQSSNSPIPVESIPLSNP-SSSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSY  204 (344)
T ss_dssp             HHHHCCCGCCCCHHHT--EEEEEEEECCC-HHHCHTT-------------------------------------------
T ss_pred             hhhhhhhhhhhhccccccccccccccccc-cccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHH
Confidence            433211    0   112223333322111 11222222232222223333333455689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 009374          160 WLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFL  239 (536)
Q Consensus       160 Wls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~~S~fF~~~~~a~~~~~~~~~~~~~  239 (536)
                      |+++++.+++..++.+++++++  +++...+...++..+++++++|+++.+++++++|.+|++.+.+..++.++.+....
T Consensus       205 ~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~  282 (344)
T PF12698_consen  205 WLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSF  282 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988887655543  34421233335667778899999999999999999999998876544333321111


Q ss_pred             HHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHHHhcCCCCCccccccCCccCCCCCccccchHHHHHHHHHHHH
Q 009374          240 TQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATF  319 (536)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~  319 (536)
                      ....   .++ .+..+..++.+.+++|++.+..++..+....         |..              ....+.++++.+
T Consensus       283 ~~~~---~~~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~---------~~~--------------~~~~~~~l~~~~  335 (344)
T PF12698_consen  283 LSGG---FFP-LSSLPSFLQWISSFLPFYWFIQGLRNIIYGD---------WSE--------------IWISLIILLLFA  335 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH---HHh-HHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------HHH--------------HHHHHHHHHHHH
Confidence            1000   011 1122345677888999998888877664210         111              112245677788


Q ss_pred             HHHHHHHHH
Q 009374          320 FVWFILAIY  328 (536)
Q Consensus       320 ~ly~lL~~y  328 (536)
                      ++|+++++|
T Consensus       336 ~v~~~l~~~  344 (344)
T PF12698_consen  336 VVYLLLAIL  344 (344)
T ss_dssp             ---------
T ss_pred             HHHHHHHhC
Confidence            888888876

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.42  E-value=8.4e-13  Score=133.63  Aligned_cols=126  Identities=18%  Similarity=0.224  Sum_probs=103.0

Q ss_pred             CCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      ....++.++++..|+-+..    ...+....+.|||++||++++||.+||+|.+||||||+=.+|.++++++ |+|.++|
T Consensus       273 ~~~ll~~~~v~v~f~i~~g----~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G  347 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGG----FLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDG  347 (534)
T ss_pred             CCceEEecceEEEEecCCc----cccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECC
Confidence            3457899999999986532    1122334578999999999999999999999999999999999999876 9999999


Q ss_pred             EecCC--cccHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHHhcC--CChHhHhh
Q 009374          483 FSIRS--SVSMTNIQKSIGVCPQFN--ILWDALSGEEHLHLFANIKG--LPLDSIKS  533 (536)
Q Consensus       483 ~~i~~--~~~~~~~~~~ig~~pQ~~--~l~~~lTv~e~L~~~~~lkg--~~~~~~~~  533 (536)
                      +++..  ..++...|+++-+|+|++  .|-|.|||.|-+.-...+++  .++.+.++
T Consensus       348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~  404 (534)
T COG4172         348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ  404 (534)
T ss_pred             ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHH
Confidence            99963  345677899999999985  78999999999998888775  44444443

>PRK13409 putative ATPase RIL; Provisional

Probab=99.39  E-value=2e-13  Score=150.96  Aligned_cols=84  Identities=26%  Similarity=0.281  Sum_probs=65.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE-----------EcCEecCCcc-cHHHhhcceEEEc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-----------IYGFSIRSSV-SMTNIQKSIGVCP  502 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~-----------i~g~~i~~~~-~~~~~~~~ig~~p  502 (536)
                      .+|++++ .+++||++||+||||||||||+++|+|+++|++|+|.           ++|.++.... .....+..+++.|
T Consensus        88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~  166 (590)
T PRK13409         88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKP  166 (590)
T ss_pred             eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecc
Confidence            5999999 9999999999999999999999999999999999997           8898873110 0111123467777


Q ss_pred             CCCCCCCCC---CHHHHHHH
Q 009374          503 QFNILWDAL---SGEEHLHL  519 (536)
Q Consensus       503 Q~~~l~~~l---Tv~e~L~~  519 (536)
                      |.....+.+   ||+|+|..
T Consensus       167 q~~~~~p~~~~~tv~e~l~~  186 (590)
T PRK13409        167 QYVDLIPKVFKGKVRELLKK  186 (590)
T ss_pred             cchhhhhhhhcchHHHHHHh
Confidence            765554433   99999864

>PLN03232 ABC transporter C family member; Provisional

Probab=99.38  E-value=6.7e-13  Score=160.92  Aligned_cols=90  Identities=20%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|+++.            +..+++|+||++++||.++++|++|||||||+++|.|+++|++|.+.      
T Consensus       614 ~I~~~~vsF~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------  675 (1495)
T PLN03232        614 AISIKNGYFSWDSKT------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------  675 (1495)
T ss_pred             cEEEEeeEEEcCCCC------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------
Confidence            699999999997531            12589999999999999999999999999999999999999998763      


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                             ..|+.+|||||++.+++. |++||+.+..
T Consensus       676 -------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~  703 (1495)
T PLN03232        676 -------VIRGSVAYVPQVSWIFNA-TVRENILFGS  703 (1495)
T ss_pred             -------EecCcEEEEcCccccccc-cHHHHhhcCC
Confidence                   236689999999999976 9999999864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.37  E-value=7.5e-13  Score=160.87  Aligned_cols=89  Identities=18%  Similarity=0.375  Sum_probs=79.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcCEe
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFS  484 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g~~  484 (536)
                      .++++|+++.|++..            +..+++|+||++++||.++|+|++|||||||+++|.|+++|++ |+|.+    
T Consensus       614 ~I~~~nvsf~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----  677 (1622)
T PLN03130        614 AISIKNGYFSWDSKA------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----  677 (1622)
T ss_pred             ceEEEeeEEEccCCC------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----
Confidence            699999999997431            1258999999999999999999999999999999999999999 89874    


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                                |+++|||||++.+++. |+|||+.|..
T Consensus       678 ----------~~~Iayv~Q~p~Lfng-TIreNI~fg~  703 (1622)
T PLN03130        678 ----------RGTVAYVPQVSWIFNA-TVRDNILFGS  703 (1622)
T ss_pred             ----------cCeEEEEcCccccCCC-CHHHHHhCCC
Confidence                      4569999999999975 9999999864

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.36  E-value=1.2e-12  Score=158.46  Aligned_cols=72  Identities=19%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|              .+|||||++.+++. |++
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l~~~-Ti~  504 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWIMPG-TIK  504 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCccCCc-cHH
Confidence            589999999999999999999999999999999999999999999987              38999999999985 999


Q ss_pred             HHHHHHH
Q 009374          515 EHLHLFA  521 (536)
Q Consensus       515 e~L~~~~  521 (536)
                      ||+.|..
T Consensus       505 eNI~~g~  511 (1490)
T TIGR01271       505 DNIIFGL  511 (1490)
T ss_pred             HHHHhcc
Confidence            9999753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.36  E-value=6.8e-13  Score=120.07  Aligned_cols=88  Identities=16%  Similarity=0.285  Sum_probs=70.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ++.+++++|+|.|++.               ..-+|+||++++||+.|++|.+|||||||+++|++-+.|++|+|...-.
T Consensus         4 ~PLL~V~~lsk~Yg~~---------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r   68 (258)
T COG4107           4 KPLLSVSGLSKLYGPG---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR   68 (258)
T ss_pred             CcceeehhhhhhhCCC---------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence            3468999999999875               3678999999999999999999999999999999999999999987543


Q ss_pred             e-----cCC--ccc-HHHhhcceEEEcCCCC
Q 009374          484 S-----IRS--SVS-MTNIQKSIGVCPQFNI  506 (536)
Q Consensus       484 ~-----i~~--~~~-~~~~~~~ig~~pQ~~~  506 (536)
                      +     +-.  ..+ ..-.|..=|++.|++.
T Consensus        69 ~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~   99 (258)
T COG4107          69 DGQPRDLYTMSEAERRRLLRTEWGFVHQNPR   99 (258)
T ss_pred             CCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence            2     111  111 1224567899999854

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=5.2e-13  Score=135.91  Aligned_cols=99  Identities=23%  Similarity=0.393  Sum_probs=88.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..+...++++.|...+              +.++++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|
T Consensus       261 g~v~F~~V~F~y~~~r--------------~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd  326 (497)
T COG5265         261 GAVAFINVSFAYDPRR--------------PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD  326 (497)
T ss_pred             ceEEEEEEEeeccccc--------------hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh
Confidence            3588999999997642              69999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ++.. ..+..|+.||++||+-+||.+ |...|+.+
T Consensus       327 ir~v-tq~slR~aIg~VPQDtvLFND-ti~yni~y  359 (497)
T COG5265         327 IRDV-TQQSLRRAIGIVPQDTVLFND-TIAYNIKY  359 (497)
T ss_pred             HHHh-HHHHHHHHhCcCcccceehhh-hHHHHHhc
Confidence            9743 356789999999999999987 77777654

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.34  E-value=5.5e-13  Score=134.45  Aligned_cols=96  Identities=23%  Similarity=0.376  Sum_probs=83.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++..|....              --|..+|++|++||++-|+|.|||||||+.+.|+|+++|++|+|++||.+
T Consensus       321 ~~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p  386 (546)
T COG4615         321 KTLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP  386 (546)
T ss_pred             cceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc
Confidence            4699999999997531              36889999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      ++. .+.++.|+...-++-+..||+.+=..|
T Consensus       387 V~~-e~ledYR~LfSavFsDyhLF~~ll~~e  416 (546)
T COG4615         387 VSA-EQLEDYRKLFSAVFSDYHLFDQLLGPE  416 (546)
T ss_pred             CCC-CCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence            974 568889998888888888887764433

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.31  E-value=5.1e-12  Score=136.73  Aligned_cols=92  Identities=24%  Similarity=0.283  Sum_probs=78.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|++|.|++.              +..++++||.|.+|+.+||+||||+||||||++|+|...|.+|+|.+.- 
T Consensus       319 ~~vl~~~~~~~~y~~~--------------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-  383 (530)
T COG0488         319 KLVLEFENVSKGYDGG--------------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-  383 (530)
T ss_pred             CeeEEEeccccccCCC--------------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-
Confidence            5679999999999653              2699999999999999999999999999999999999999999998642 


Q ss_pred             ecCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFA  521 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~  521 (536)
                      .           -.+||.+|+. .+.++.|+.|++.-..
T Consensus       384 ~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~  411 (530)
T COG0488         384 T-----------VKIGYFDQHRDELDPDKTVLEELSEGF  411 (530)
T ss_pred             c-----------eEEEEEEehhhhcCccCcHHHHHHhhC
Confidence            1           2599999996 5457889999886543

>PLN03073 ABC transporter F family; Provisional

Probab=99.24  E-value=2.9e-12  Score=144.35  Aligned_cols=65  Identities=20%  Similarity=0.226  Sum_probs=56.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc---ccCccEEEEc
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALIY  481 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~---~pt~G~i~i~  481 (536)
                      ..|+++|++|.|++.               .+++|+||+|.+||++||+|+||||||||+++|+|..   .|++|+|...
T Consensus       176 ~~I~i~nls~~y~~~---------------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~  240 (718)
T PLN03073        176 KDIHMENFSISVGGR---------------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHV  240 (718)
T ss_pred             eeEEEceEEEEeCCC---------------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEE
Confidence            469999999999643               5999999999999999999999999999999999964   5788999755


Q ss_pred             CEe
Q 009374          482 GFS  484 (536)
Q Consensus       482 g~~  484 (536)
                      +++
T Consensus       241 ~Q~  243 (718)
T PLN03073        241 EQE  243 (718)
T ss_pred             ecc
Confidence            443

>PTZ00243 ABC transporter; Provisional

Probab=99.24  E-value=1.1e-11  Score=150.35  Aligned_cols=72  Identities=21%  Similarity=0.368  Sum_probs=65.9

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG  513 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv  513 (536)
                      +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+.              +.+|||||++.+++ .|+
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~~-~Tv  737 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIMN-ATV  737 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccCC-CcH
Confidence            359999999999999999999999999999999999999999999752              46999999999875 699


Q ss_pred             HHHHHHH
Q 009374          514 EEHLHLF  520 (536)
Q Consensus       514 ~e~L~~~  520 (536)
                      +||+.++
T Consensus       738 ~enI~~~  744 (1560)
T PTZ00243        738 RGNILFF  744 (1560)
T ss_pred             HHHHHcC
Confidence            9999884

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.19  E-value=6.3e-11  Score=120.22  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=95.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-----CccEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDA  478 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-----t~G~i  478 (536)
                      .+.++++||+..|....           +.+.||+++||++++||.++|+|.+|||||-+.+.+.|+++.     -+|+|
T Consensus         4 ~~lL~v~nLsV~f~~~~-----------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i   72 (534)
T COG4172           4 MPLLSIRNLSVAFHQEG-----------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI   72 (534)
T ss_pred             CcceeeeccEEEEecCC-----------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee
Confidence            34689999999997532           245799999999999999999999999999999999999864     35899


Q ss_pred             EEcCEecCC--cccHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHH-HHhcCCChHhHhhhh
Q 009374          479 LIYGFSIRS--SVSMTNIQ-KSIGVCPQFN--ILWDALSGEEHLHLF-ANIKGLPLDSIKSVC  535 (536)
Q Consensus       479 ~i~g~~i~~--~~~~~~~~-~~ig~~pQ~~--~l~~~lTv~e~L~~~-~~lkg~~~~~~~~~v  535 (536)
                      .++|.|+-.  ..+++.+| .+||+++|++  .|.|-.|+.+.+.-. ..-+|+++++.++++
T Consensus        73 ~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~  135 (534)
T COG4172          73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA  135 (534)
T ss_pred             EEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            999999853  23345555 4699999996  577888888877554 444688877766543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.18  E-value=2.4e-11  Score=113.89  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcC
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ  503 (536)
                      +.|++|+||++++||+++|+||||||||||++++.    +++|++.++|..-  .    ..++.++|++|
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~--~----~~~~~~~~~~q   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP--K----FSRNKLIFIDQ   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc--c----cccccEEEEhH
Confidence            47999999999999999999999999999999985    3789999987632  1    11345889888

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.15  E-value=1e-10  Score=136.54  Aligned_cols=92  Identities=23%  Similarity=0.386  Sum_probs=81.0

Q ss_pred             CCceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       403 ~~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .+.+++++|.+....+..            +...|+|+||+|++||.+|++|+-|||||+|+.+|.|..+..+|++.++|
T Consensus       515 ~~~~i~i~~~sfsW~~~~------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g  582 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSES------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG  582 (1381)
T ss_pred             CCceEEEeeeeEecCCCC------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence            356799999999886521            22489999999999999999999999999999999999999999999987


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .              ++||||.+-++.. |+|||+.|..
T Consensus       583 s--------------iaYv~Q~pWI~ng-TvreNILFG~  606 (1381)
T KOG0054|consen  583 S--------------VAYVPQQPWIQNG-TVRENILFGS  606 (1381)
T ss_pred             e--------------EEEeccccHhhCC-cHHHhhhcCc
Confidence            2              8999999999876 9999998854

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.05  E-value=1.2e-10  Score=105.82  Aligned_cols=83  Identities=24%  Similarity=0.301  Sum_probs=68.2

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      -+-.+|.++..||+.-|+||||||||||+-.++|+++ -+|+|.++|.++.. .+..+..++-+|..|+..-...|.|+.
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~-~~~~eLArhRAYLsQqq~p~f~mpV~~   91 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEA-WSATELARHRAYLSQQQTPPFAMPVWH   91 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhH-HhHhHHHHHHHHHhhccCCcchhhhhh
Confidence            4667899999999999999999999999999999985 67999999999852 344455556688888876666778888


Q ss_pred             HHHHH
Q 009374          516 HLHLF  520 (536)
Q Consensus       516 ~L~~~  520 (536)
                      .|.++
T Consensus        92 YL~L~   96 (248)
T COG4138          92 YLTLH   96 (248)
T ss_pred             hhhhc
Confidence            77664

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.04  E-value=1.7e-10  Score=113.91  Aligned_cols=87  Identities=15%  Similarity=0.277  Sum_probs=61.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc----------------CccccCcc--------EEEEcCEecCC--c
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT----------------GITPVTGG--------DALIYGFSIRS--S  488 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~----------------g~~~pt~G--------~i~i~g~~i~~--~  488 (536)
                      .++++++     |++++|+|||||||||++++|+                +++.+++|        ++.+++.+-..  .
T Consensus        16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~   90 (243)
T cd03272          16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID   90 (243)
T ss_pred             cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence            5788876     8999999999999999999997                55566666        55555532110  1


Q ss_pred             ccHHHhhcceEEEcCCCCCCC-CCCHHHHHHHHHHhcCCC
Q 009374          489 VSMTNIQKSIGVCPQFNILWD-ALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ~~~l~~-~lTv~e~L~~~~~lkg~~  527 (536)
                      .+...+++.+|++||+..+++ .+|..|...+...+ |++
T Consensus        91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~  129 (243)
T cd03272          91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFS  129 (243)
T ss_pred             CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCC
Confidence            112245778999999988887 46777766666554 554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.99  E-value=2.2e-11  Score=117.81  Aligned_cols=81  Identities=19%  Similarity=0.377  Sum_probs=64.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|.. .|++.               .+++++++     +++|++|||||||||++++|.          .+.|.+.
T Consensus         5 ~l~l~nfk-~~~~~---------------~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~   53 (212)
T cd03274           5 KLVLENFK-SYAGE---------------QVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA   53 (212)
T ss_pred             EEEEECcc-cCCCC---------------eeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH
Confidence            36777765 67543               58999987     899999999999999999996          3455443


Q ss_pred             CCcccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          486 RSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       486 ~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      .      ..+ +++|+++|+..+.+.+|++|++.+++..
T Consensus        54 ~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   86 (212)
T cd03274          54 S------KMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEI   86 (212)
T ss_pred             H------HhhhhhHHHHhcCCCCCCCCceEEEEEEEEeC
Confidence            1      223 5799999999999999999999888764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.96  E-value=3.7e-10  Score=118.74  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEecCCc--ccHHHhhcceEEEcCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIRSS--VSMTNIQKSIGVCPQF  504 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~i~~~--~~~~~~~~~ig~~pQ~  504 (536)
                      .||+++|+++++||+++|+|||||||||+++  .|+..|++| +|.++|.++...  .+++..|    +++|.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR----~VFQ~   86 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD----EIFDG   86 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH----HHHHh
Confidence            5899999999999999999999999999999  778888888 799999998532  2334444    67775

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.91  E-value=4.9e-10  Score=107.18  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---------cEEEEcCEecCCcccHHHhhcceEEEcCCCCCC
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---------GDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW  508 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---------G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~  508 (536)
                      +++++++++| +++|+|||||||||++++|+|+.++..         |++.++|.++..    ...++.+|++||++..+
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~vfq~~~~~   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK----PANFAEVTLTFDNSDGR   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC----CCceEEEEEEEEcCCCc
Confidence            6789999999 999999999999999999999987653         457777766531    12356799999988765

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.88  E-value=1.8e-09  Score=113.82  Aligned_cols=90  Identities=20%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE---EEcCEecCCc-----ccHHHhhcceEEEcCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA---LIYGFSIRSS-----VSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i---~i~g~~i~~~-----~~~~~~~~~ig~~pQ~~~  506 (536)
                      .|++++ +.+.+||+++|+|+||+|||||+++|+|..+++.+.+   -.+|.++...     .+....|..++++||+..
T Consensus       144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s  222 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES  222 (434)
T ss_pred             eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence            699999 9999999999999999999999999999998886433   2333333210     000123557999999999


Q ss_pred             CCCCCCHHHHHHHHHHhcC
Q 009374          507 LWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       507 l~~~lTv~e~L~~~~~lkg  525 (536)
                      .+..+++.|++...+...+
T Consensus       223 ~~~rl~a~e~a~~iAEyfr  241 (434)
T PRK07196        223 PLMRIKATELCHAIATYYR  241 (434)
T ss_pred             hhhhHHHHHHHHHHHHHhh
Confidence            9999999999988887653

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=1.8e-09  Score=123.83  Aligned_cols=90  Identities=23%  Similarity=0.384  Sum_probs=79.4

Q ss_pred             CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD  509 (536)
Q Consensus       433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~  509 (536)
                      ....++|+|.-+++||.+-+|||.||||||+++.|+|-++-   ..|+|..+|++...   ... ++.++||+|+|..++
T Consensus       127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e---~~~-~~~~aY~~e~DvH~p  202 (1391)
T KOG0065|consen  127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKE---FVP-KKTVAYNSEQDVHFP  202 (1391)
T ss_pred             cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccc---ccc-CceEEeccccccccc
Confidence            34699999999999999999999999999999999998753   35699999998742   222 778999999999999


Q ss_pred             CCCHHHHHHHHHHhcCC
Q 009374          510 ALSGEEHLHLFANIKGL  526 (536)
Q Consensus       510 ~lTv~e~L~~~~~lkg~  526 (536)
                      +|||+|.|.|-++.||.
T Consensus       203 ~lTVreTldFa~rck~~  219 (1391)
T KOG0065|consen  203 ELTVRETLDFAARCKGP  219 (1391)
T ss_pred             eeEEeehhhHHHhccCC
Confidence            99999999999999875

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.1e-08  Score=108.84  Aligned_cols=85  Identities=22%  Similarity=0.343  Sum_probs=78.5

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC---CCCCCCCC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF---NILWDALS  512 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~---~~l~~~lT  512 (536)
                      .++|+||++++|||+||-|-=|||+|-+++.|-|..++++|+|.++|+++......+.++..+||||-+   +.++..++
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            589999999999999999999999999999999999999999999999886555567788999999986   78999999


Q ss_pred             HHHHHHHH
Q 009374          513 GEEHLHLF  520 (536)
Q Consensus       513 v~e~L~~~  520 (536)
                      ++||+.+.
T Consensus       354 I~~Ni~l~  361 (500)
T COG1129         354 IAENITLA  361 (500)
T ss_pred             HHHheehH
Confidence            99999887

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.84  E-value=2.3e-08  Score=104.50  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=87.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...+++++|+..-..              ...+|+++||+|++|||+|+-|-.|-|-+.|+..|+|+.+|.+|+|.++|+
T Consensus       255 ~~vL~V~~L~v~~~~--------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~  320 (501)
T COG3845         255 EVVLEVEDLSVKDRR--------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK  320 (501)
T ss_pred             CeEEEEeeeEeecCC--------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCE
Confidence            457899999876532              236999999999999999999999999999999999999999999999999


Q ss_pred             ec-CCcccHHHhhcceEEEcCC---CCCCCCCCHHHHHHHHHH
Q 009374          484 SI-RSSVSMTNIQKSIGVCPQF---NILWDALSGEEHLHLFAN  522 (536)
Q Consensus       484 ~i-~~~~~~~~~~~~ig~~pQ~---~~l~~~lTv~e~L~~~~~  522 (536)
                      ++ ...+..+..+..+||+|.+   ..+.+++|+.||+.+...
T Consensus       321 ~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~  363 (501)
T COG3845         321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH  363 (501)
T ss_pred             eccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhc
Confidence            97 3222333445679999997   588999999999988543

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.81  E-value=1.2e-08  Score=108.00  Aligned_cols=108  Identities=20%  Similarity=0.238  Sum_probs=85.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..+++++++..-+...             ...++|+||+|++|+-+-+.||||+|||+|+|+++|+-+.++|++.-...
T Consensus       431 Dn~i~~e~v~l~tPt~g-------------~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~  497 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTNG-------------DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD  497 (659)
T ss_pred             cceEEeeeeeecCCCCC-------------ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc
Confidence            46899999998877531             25899999999999999999999999999999999999999999875432


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH-----HHhcCCChHhHhhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF-----ANIKGLPLDSIKSV  534 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~-----~~lkg~~~~~~~~~  534 (536)
                      .-         -+.+=|+||.+..-.. |.||.+.+.     ..-++.+.+++.+.
T Consensus       498 ~~---------~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~  543 (659)
T KOG0060|consen  498 GG---------PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRI  543 (659)
T ss_pred             CC---------CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHH
Confidence            11         1458899999876555 899998876     34455555555443

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.76  E-value=1.5e-08  Score=94.52  Aligned_cols=69  Identities=28%  Similarity=0.394  Sum_probs=62.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +.+|+++++++.|+...              +.+-|.|++++.|.-.-|+|.|||||||++++|+|-.-.-.|.|.+.|+
T Consensus        11 ~~aievsgl~f~y~~~d--------------P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgr   76 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSD--------------PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGR   76 (291)
T ss_pred             cceEEEeccEEecccCC--------------ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCc
Confidence            45899999999998752              6899999999999999999999999999999999988777799999998


Q ss_pred             ecC
Q 009374          484 SIR  486 (536)
Q Consensus       484 ~i~  486 (536)
                      +--
T Consensus        77 saF   79 (291)
T KOG2355|consen   77 SAF   79 (291)
T ss_pred             Ccc
Confidence            753

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.76  E-value=5.9e-09  Score=104.12  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=56.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH  516 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~  516 (536)
                      +-++++|+|||||||++++|+|+++|++|++.++|+++....+..++.+.++++||++ +...++|.|+
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~  179 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG  179 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence            6789999999999999999999999999999999999853233456667789999976 4567777664

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.71  E-value=8.3e-09  Score=108.50  Aligned_cols=66  Identities=26%  Similarity=0.294  Sum_probs=58.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.+.+.|+++.|.+..              ...++++|.+..++-++++||||+||||++++++|.+.|+.|.|.-.-+
T Consensus       387 ~pvi~~~nv~F~y~~~~--------------~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H  452 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNP--------------MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH  452 (614)
T ss_pred             CCeEEEeccccCCCCcc--------------hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence            56789999999997642              4899999999999999999999999999999999999999999865443

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.69  E-value=4.3e-08  Score=103.58  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC-
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-  482 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g-  482 (536)
                      ...++.+++++.|...              ..+++.++ .+.+||+++|+|+||+|||||+++|+++.+|+.|.+.+.| 
T Consensus       137 p~~~~r~~v~~~l~TG--------------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe  201 (450)
T PRK06002        137 PPAMTRARVETGLRTG--------------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE  201 (450)
T ss_pred             CCCeEeecceEEcCCC--------------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence            4468899999999643              25899996 9999999999999999999999999999999999988864 


Q ss_pred             --EecCCc--ccHHHh-hcceEEEcCCCC
Q 009374          483 --FSIRSS--VSMTNI-QKSIGVCPQFNI  506 (536)
Q Consensus       483 --~~i~~~--~~~~~~-~~~ig~~pQ~~~  506 (536)
                        .++...  ..+... ++.+++++|.|.
T Consensus       202 rgrev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        202 RGREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             CCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence              554211  112222 357999999864

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.67  E-value=6e-08  Score=105.24  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=83.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++|++..-++..              ..|+++++++++||-+-+.|+|||||||++|.|+|+-|--+|+|..-. 
T Consensus       390 ~~~i~~~nl~l~~p~~~--------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-  454 (604)
T COG4178         390 DHGITLENLSLRTPDGQ--------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-  454 (604)
T ss_pred             cceeEEeeeeEECCCCC--------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-
Confidence            35799999999887641              689999999999999999999999999999999999999888876431 


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                                 ...+-|+||.+.+-.. |.||-|.+.......+.+++.+
T Consensus       455 -----------~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~  492 (604)
T COG4178         455 -----------DSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVA  492 (604)
T ss_pred             -----------CCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHH
Confidence                       2347899999987666 9999988876554455555443

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.67  E-value=2.7e-09  Score=102.17  Aligned_cols=68  Identities=10%  Similarity=0.049  Sum_probs=52.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .+.+|++++.  |++++|+|||||||||++++|+|...     +...|.++..        +  ++.+|.+.++..+|++
T Consensus        15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a--------~--~~~~q~~~l~~~~~~~   77 (199)
T cd03283          15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA--------S--SFELPPVKIFTSIRVS   77 (199)
T ss_pred             eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec--------C--ccCcccceEEEeccch
Confidence            4778887776  79999999999999999999988553     1235555521        1  2567788999999999


Q ss_pred             HHHHH
Q 009374          515 EHLHL  519 (536)
Q Consensus       515 e~L~~  519 (536)
                      |++.+
T Consensus        78 d~l~~   82 (199)
T cd03283          78 DDLRD   82 (199)
T ss_pred             hcccc
Confidence            99876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.64  E-value=7e-09  Score=99.75  Aligned_cols=74  Identities=24%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             eEEEecCcEEEEeCCCCCchhHHHHhH----cCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC-----CCCCCC
Q 009374          441 WVNIAKDQLFCLLGPNGAGKTTTISCL----TGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN-----ILWDAL  511 (536)
Q Consensus       441 sl~v~~gei~~LlG~NGaGKSTll~~l----~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~-----~l~~~l  511 (536)
                      ++++.+| +++|+|||||||||++++|    .|..+|++|.+.-+...+.    ....+..+++++|++     .+...+
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~----~~~~~~~v~~~f~~~~~~~~~v~r~~   91 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR----EGEVRAQVKLAFENANGKKYTITRSL   91 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh----CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence            3556666 9999999999999999999    5999998887762221221    123456799999998     444555


Q ss_pred             CHHHHHHH
Q 009374          512 SGEEHLHL  519 (536)
Q Consensus       512 Tv~e~L~~  519 (536)
                      |+.|++.+
T Consensus        92 ~~~~~~~~   99 (204)
T cd03240          92 AILENVIF   99 (204)
T ss_pred             hHhhceee
Confidence            66776643

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.64  E-value=2.8e-08  Score=94.17  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC--CCCCCCCCH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF--NILWDALSG  513 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~--~~l~~~lTv  513 (536)
                      ..+=+.+.+++|+.+++.|+||||||||+++|+|+.+|+.|.+.+.+..-.   .. ..+..++++.|.  +...+.+|.
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~---~~-~~~~~~~~~~~~~~~~~~~~~~~   89 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAEL---QL-PHPNWVRLVTRPGNVEGSGEVTM   89 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcccc---CC-CCCCEEEEEEecCCCCCCCccCH
Confidence            445566779999999999999999999999999999999999999774321   11 113345666554  445678899


Q ss_pred             HHHHHHHHHh
Q 009374          514 EEHLHLFANI  523 (536)
Q Consensus       514 ~e~L~~~~~l  523 (536)
                      .|.+....+.
T Consensus        90 ~~~l~~~lR~   99 (186)
T cd01130          90 ADLLRSALRM   99 (186)
T ss_pred             HHHHHHHhcc
Confidence            9988876654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.63  E-value=1.9e-08  Score=107.60  Aligned_cols=73  Identities=25%  Similarity=0.469  Sum_probs=59.6

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      ++++.+..+.+|++++|+||||+|||||+..|++.+....|.                  +++|++.++.   ...++.|
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~------------------~kV~LI~~Dt---~RigA~E  303 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA------------------SKVALLTTDS---YRIGGHE  303 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC------------------CeEEEEeCCc---cchhHHH
Confidence            566677778899999999999999999999999987666553                  1467777764   4578999


Q ss_pred             HHHHHHHhcCCChH
Q 009374          516 HLHLFANIKGLPLD  529 (536)
Q Consensus       516 ~L~~~~~lkg~~~~  529 (536)
                      +|.+|+++.|++..
T Consensus       304 QLr~~AeilGVpv~  317 (484)
T PRK06995        304 QLRIYGKILGVPVH  317 (484)
T ss_pred             HHHHHHHHhCCCee
Confidence            99999999988753

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.58  E-value=8.8e-08  Score=99.01  Aligned_cols=84  Identities=25%  Similarity=0.257  Sum_probs=65.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++..+++|.|++-                .|+-=.=+++.||+.|++||||-||||+.++|+|.++|++|.    ..+
T Consensus       341 ~lv~y~~~~k~~g~F----------------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~  400 (591)
T COG1245         341 TLVEYPDLKKTYGDF----------------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED  400 (591)
T ss_pred             eeeecchheeecCce----------------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc
Confidence            357788888888752                344344568899999999999999999999999999999998    222


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                                 -++.|=||.-.--.+.||++-|.-
T Consensus       401 -----------~~vSyKPQyI~~~~~gtV~~~l~~  424 (591)
T COG1245         401 -----------LKVSYKPQYISPDYDGTVEDLLRS  424 (591)
T ss_pred             -----------ceEeecceeecCCCCCcHHHHHHH
Confidence                       248899998655567899988754

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.55  E-value=1.4e-08  Score=100.86  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=53.4

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCE-ecCCcccH-HHhhcceEEEcCCC---------CCCCCCCHH
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGF-SIRSSVSM-TNIQKSIGVCPQFN---------ILWDALSGE  514 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~-~i~~~~~~-~~~~~~ig~~pQ~~---------~l~~~lTv~  514 (536)
                      ..+++|+|||||||||++++|.+++.++ .|++...|. ++...... ...+..+++.+|++         .+.+.+||.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            6799999999999999999999999886 467877775 43111111 11234799999984         456788888


Q ss_pred             HHHHH
Q 009374          515 EHLHL  519 (536)
Q Consensus       515 e~L~~  519 (536)
                      +++..
T Consensus       105 r~I~~  109 (251)
T cd03273         105 RQIVL  109 (251)
T ss_pred             EEEEc
Confidence            87754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=7.7e-08  Score=98.61  Aligned_cols=102  Identities=25%  Similarity=0.388  Sum_probs=77.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.+-++++++.|++.+              +..++++|.|.-..-++|+||||.||||++++|+|-+.|+.|+..=+  
T Consensus       584 PPvLGlH~VtFgy~gqk--------------pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn--  647 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQK--------------PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN--  647 (807)
T ss_pred             CCeeecccccccCCCCC--------------chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc--
Confidence            35688999999998752              68899999999999999999999999999999999999999885421  


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH-HHHHHHhcCCChHhHhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH-LHLFANIKGLPLDSIKS  533 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~-L~~~~~lkg~~~~~~~~  533 (536)
                                -|-+||+.-|+..  +.|+.+|. .++..+...+|.++.++
T Consensus       648 ----------hrL~iG~FdQh~~--E~L~~Eetp~EyLqr~FNlpyq~ARK  686 (807)
T KOG0066|consen  648 ----------HRLRIGWFDQHAN--EALNGEETPVEYLQRKFNLPYQEARK  686 (807)
T ss_pred             ----------ceeeeechhhhhH--HhhccccCHHHHHHHhcCCChHHHHH
Confidence                      2456999999853  33444442 23445556666665543

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.53  E-value=5.3e-08  Score=95.22  Aligned_cols=34  Identities=26%  Similarity=0.538  Sum_probs=30.9

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHH-HhH
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI-SCL  467 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll-~~l  467 (536)
                      +.+|+++||++++||++||+|+||||||||+ ..+
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999999999999999999995 444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.41  E-value=4.5e-07  Score=95.23  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=74.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|.++|+-..-+...              .+|..++|+|.+|--+-++||||||||+++|+|.|+-|.-.|...+-    
T Consensus       481 gI~lenIpvItP~~~--------------vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----  542 (728)
T KOG0064|consen  481 GIILENIPVITPAGD--------------VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----  542 (728)
T ss_pred             ceEEecCceeccCcc--------------eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC----
Confidence            577777766655431              58999999999999999999999999999999999999876665431    


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-----HhcCCChHhHhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-----NIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-----~lkg~~~~~~~~~  534 (536)
                         .     +.+|=|.||.+..- .=|.||.+-+..     +=||.+.++..+.
T Consensus       543 ---~-----~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~i  587 (728)
T KOG0064|consen  543 ---R-----PNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAI  587 (728)
T ss_pred             ---C-----CcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHH
Confidence               1     34599999987654 335666654421     2357776665543

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.39  E-value=3.5e-07  Score=89.59  Aligned_cols=73  Identities=19%  Similarity=0.319  Sum_probs=56.4

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccE----EEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD----ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~----i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      ..++||.|+||||||||.+.|++++++.+|.    +..++...     ....++..|++++.+. .+.+++.+.+.++..
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~-----~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~  106 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL-----DNAVLDAHGLRPRKGA-PETFDVAGLAALLRR  106 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC-----CHHHHHhcccccccCC-CCCCCHHHHHHHHHH
Confidence            4799999999999999999999999999998    44444332     1223445688887554 478899999999888


Q ss_pred             hcC
Q 009374          523 IKG  525 (536)
Q Consensus       523 lkg  525 (536)
                      ++.
T Consensus       107 l~~  109 (229)
T PRK09270        107 LRA  109 (229)
T ss_pred             HHc
Confidence            773

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.39  E-value=1.6e-07  Score=90.92  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=52.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEe-cCcEEEEeCCCCCchhHHHHhHcC-ccccCccEEEEcC-
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA-KDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYG-  482 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~-~gei~~LlG~NGaGKSTll~~l~g-~~~pt~G~i~i~g-  482 (536)
                      .++++|+. .|.+                  -++++|... +|++++|+|||||||||++++|++ +..+..+....+. 
T Consensus         5 ~i~l~nf~-~y~~------------------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~   65 (213)
T cd03279           5 KLELKNFG-PFRE------------------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENL   65 (213)
T ss_pred             EEEEECCc-CcCC------------------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhH
Confidence            47788876 6633                  145566544 599999999999999999999996 4444445444321 


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCC
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNIL  507 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l  507 (536)
                      .+.   ....+.+..+++.+|++..
T Consensus        66 ~~~---~~~~~~~~~v~~~f~~~~~   87 (213)
T cd03279          66 RSV---FAPGEDTAEVSFTFQLGGK   87 (213)
T ss_pred             HHH---hcCCCccEEEEEEEEECCe
Confidence            111   1112345568999998643

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.38  E-value=4.5e-07  Score=96.46  Aligned_cols=71  Identities=21%  Similarity=0.257  Sum_probs=58.2

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc-------ccHHHhhcceEEEcCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-------VSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~-------~~~~~~~~~ig~~pQ~~~  506 (536)
                      .++|++ +.+.+||+++|+|+||+|||||+++|+|..+|+.|.+.+.|++-+..       .+...+++.++++.+.|.
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~  224 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ  224 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence            589999 99999999999999999999999999999999999999866543211       122346778999988643

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.37  E-value=3.1e-07  Score=91.45  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=63.4

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc--------Cc--cccCcc-----------EEEEcCEecCCc--cc-
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT--------GI--TPVTGG-----------DALIYGFSIRSS--VS-  490 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~--------g~--~~pt~G-----------~i~i~g~~i~~~--~~-  490 (536)
                      ..|+|+|++++.|+.+++.|++|||||||++.+.        +.  ..|..+           -+.|+..+|...  .. 
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            5899999999999999999999999999998652        11  012111           366666665321  00 


Q ss_pred             ------HHHhhc----------------ceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          491 ------MTNIQK----------------SIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       491 ------~~~~~~----------------~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                            .+.+|+                .++|..+....+.+||+.|++.|++.+++
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~  145 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK  145 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh
Confidence                  122222                25566677777889999999999987654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.37  E-value=2.5e-07  Score=86.89  Aligned_cols=69  Identities=16%  Similarity=0.174  Sum_probs=52.2

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +||+++++|+|||||||++++|+|++.+    +.++|.++....+.++.  ..|+.+|+...++.+++.++...-
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~--~~g~~~~~~~~~~~~~~~~~~~~~   70 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKM--SQGIPLTDEDRLPWLERLNDASYS   70 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHH--hcCCCCCcccchHHHHHHHHHHHH
Confidence            5899999999999999999999999877    58899887422112222  357777776666778888887643

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.37  E-value=3.5e-07  Score=92.18  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .++||.|+|||||||+.++|.+++.  |++|+|.+-+.|--. .+ .+.++..|+. |.....+.+++.+.+.+..+++.
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~-~~-~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk~  139 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL-HP-NQVLKERNLM-KKKGFPESYDMHRLVKFLSDLKS  139 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc-cc-HHHHHHcCCc-cccCCChhccHHHHHHHHHHHHC
Confidence            5899999999999999999999998  788988775554321 11 2233446654 77777889999999999998873

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.36  E-value=5.3e-07  Score=95.19  Aligned_cols=62  Identities=26%  Similarity=0.448  Sum_probs=55.0

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i  480 (536)
                      ...+++.++++.|.+.               ..++|++|++.+||-+||+|+|||||||+|++|+|-..|..-++-+
T Consensus        73 s~dvk~~sls~s~~g~---------------~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~  134 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHGV---------------ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF  134 (614)
T ss_pred             cccceeeeeeeccCCc---------------eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence            4569999999999764               6999999999999999999999999999999999999887665543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.25  E-value=9.5e-07  Score=90.53  Aligned_cols=76  Identities=21%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCccc---H--HHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVS---M--TNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~---~--~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      .+|++++++||||+|||||+..|++.+.+..|+|.+-+.|......   .  ...++.+++++|.....+..++.+.+..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999999999988999998877632111   1  1235679999997666666677777654


Q ss_pred             H
Q 009374          520 F  520 (536)
Q Consensus       520 ~  520 (536)
                      .
T Consensus       192 ~  192 (318)
T PRK10416        192 A  192 (318)
T ss_pred             H
Confidence            3

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.22  E-value=1.3e-06  Score=82.79  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHHhcC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~~~~~lkg  525 (536)
                      |++++|+|||||||||++++|++...+   .+.+.+..+... .....++.+++.+|+.. ..+.-...|+-.......|
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRP-ASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCc-cchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            789999999999999999999998865   577777766432 22334567889988721 1111122334445556667


Q ss_pred             CChHhHhh
Q 009374          526 LPLDSIKS  533 (536)
Q Consensus       526 ~~~~~~~~  533 (536)
                      .+. ++++
T Consensus        78 ~~~-~~~~   84 (186)
T PRK10078         78 VGI-EIDL   84 (186)
T ss_pred             CcH-HHHH
Confidence            776 3443

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.22  E-value=8.1e-07  Score=90.99  Aligned_cols=49  Identities=22%  Similarity=0.366  Sum_probs=44.1

Q ss_pred             CcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--------cccCccEEEEc
Q 009374          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIY  481 (536)
Q Consensus       433 ~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--------~~pt~G~i~i~  481 (536)
                      +..+++|+||.+++|++.++.|++||||||+++||.|.        ++|++|.|.+-
T Consensus       395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp  451 (593)
T COG2401         395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP  451 (593)
T ss_pred             eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence            34699999999999999999999999999999999986        46899988764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.19  E-value=1.1e-06  Score=88.96  Aligned_cols=85  Identities=19%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhhc-ceEEEcCCCCC---C-C
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQK-SIGVCPQFNIL---W-D  509 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~~-~ig~~pQ~~~l---~-~  509 (536)
                      +.+...+. +++++++|+||+|||||+|.|.|...++.|++..   .|...+  ++...++. ..|++.+.+.+   . .
T Consensus       153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT--~~~~~~~~~~~~~liDtPG~~~~~~~  229 (287)
T cd01854         153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTT--THRELFPLPGGGLLIDTPGFREFGLL  229 (287)
T ss_pred             HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCccc--ceEEEEEcCCCCEEEECCCCCccCCc
Confidence            34444444 5899999999999999999999999999999876   344432  12222322 36899999887   3 5


Q ss_pred             CCCHHHHHHHHHHhcC
Q 009374          510 ALSGEEHLHLFANIKG  525 (536)
Q Consensus       510 ~lTv~e~L~~~~~lkg  525 (536)
                      .++..|.+..|..+.+
T Consensus       230 ~~~~~~~~~~f~~~~~  245 (287)
T cd01854         230 HIDPEELAHYFPEFRE  245 (287)
T ss_pred             cCCHHHHHHHhHHHHH
Confidence            7899999988887654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.18  E-value=1.9e-06  Score=80.91  Aligned_cols=89  Identities=16%  Similarity=0.236  Sum_probs=65.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc----cCccEEEEcC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDALIYG  482 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~----pt~G~i~i~g  482 (536)
                      +.++||+..+..+.           +.++|||++|+++.+||+-||+|.+|||||-.-+.|+|..+    .|..+..+++
T Consensus         4 LDIrnL~IE~~Tsq-----------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~   72 (330)
T COG4170           4 LDIRNLTIEFKTSQ-----------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDD   72 (330)
T ss_pred             ccccceEEEEecCC-----------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhccccc
Confidence            55778888876542           34679999999999999999999999999999999999875    3445555555


Q ss_pred             EecCCcc---cHHHhhcceEEEcCCCC
Q 009374          483 FSIRSSV---SMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       483 ~~i~~~~---~~~~~~~~ig~~pQ~~~  506 (536)
                      .|+-..+   .++-+.+.+++.+|++.
T Consensus        73 idLL~L~Pr~RRk~ig~~isMIFQeP~   99 (330)
T COG4170          73 IDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             chhhcCChHHhhhhhccchhhhhcCch
Confidence            5542211   12234567889999863

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.09  E-value=3.6e-06  Score=86.08  Aligned_cols=49  Identities=24%  Similarity=0.350  Sum_probs=45.4

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .++|++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+...|.+
T Consensus        58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            599999 9999999999999999999999999999999999888776643

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.08  E-value=3.6e-06  Score=88.94  Aligned_cols=69  Identities=19%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---cEEEEcCEecCCccc--HH-HhhcceEEEcCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSVS--MT-NIQKSIGVCPQF  504 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---G~i~i~g~~i~~~~~--~~-~~~~~ig~~pQ~  504 (536)
                      .|++++ +.+.+||+++|+|+||+|||||+++|++...++.   |.|-.+|+++..-.+  .. ..+++++++...
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~  214 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT  214 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence            699999 9999999999999999999999999999999887   889899988742111  11 123567777665

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.07  E-value=4.2e-06  Score=88.55  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++.+.+++.+...              +.|+|++ +.+.+||.++|+|+||+||||++++|+|...++.|.+...|..
T Consensus       128 ~~~~r~~v~~~l~tG--------------i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        128 PAMVRQPITQPLMTG--------------IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             CceeccCHhheeCCC--------------ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            356677777777432              3699999 9999999999999999999999999999999999888776653

>TIGR00235 udk uridine kinase

Probab=98.05  E-value=1.4e-06  Score=83.99  Aligned_cols=73  Identities=16%  Similarity=-0.006  Sum_probs=46.3

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ++|+++||.|+|||||||+.+.|++++++ ..+.+..++.-.. . .....++..++.+|.+..++.....++|.-
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   77 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKD-Q-SHLEMAERKKTNFDHPDAFDNDLLYEHLKN   77 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccC-h-hhCCHHHhcCCCCCCccHhHHHHHHHHHHH
Confidence            57899999999999999999999999876 2233333332111 1 111223456777777655555444555543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.05  E-value=3.7e-06  Score=80.55  Aligned_cols=42  Identities=24%  Similarity=0.478  Sum_probs=35.9

Q ss_pred             eeeceeEEEecCc-EEEEeCCCCCchhHHHHhHc--------CccccCccE
Q 009374          436 AIKGLWVNIAKDQ-LFCLLGPNGAGKTTTISCLT--------GITPVTGGD  477 (536)
Q Consensus       436 al~~lsl~v~~ge-i~~LlG~NGaGKSTll~~l~--------g~~~pt~G~  477 (536)
                      .+-++|+++.+|+ +++|.||||+||||++++|+        |..-|....
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~   66 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG   66 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc
Confidence            4667999999995 89999999999999999999        876665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=3.9e-06  Score=88.27  Aligned_cols=51  Identities=18%  Similarity=0.402  Sum_probs=46.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..-|.+.+.+..|+++               ..|++-++++..|.-+||+|+||+|||||||+|+.
T Consensus        78 ~~Di~~~~fdLa~G~k---------------~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGK---------------ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ccceeeeeeeeeecch---------------hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            3458888999999864               58999999999999999999999999999999987

>PRK01889 GTPase RsgA; Reviewed

Probab=98.03  E-value=3.3e-06  Score=88.08  Aligned_cols=79  Identities=24%  Similarity=0.305  Sum_probs=61.1

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      -++.+.-.+++|++++++|+||+|||||++.|+|...++.|++.+++.....    ...++.+++++|...+++. .+..
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~----tt~~~~l~~l~~~~~l~Dt-pG~~  258 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH----TTTHRELHPLPSGGLLIDT-PGMR  258 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc----hhhhccEEEecCCCeecCC-Cchh
Confidence            3555666678999999999999999999999999999999999998754321    1235679999998877753 4454


Q ss_pred             HHHH
Q 009374          516 HLHL  519 (536)
Q Consensus       516 ~L~~  519 (536)
                      ++.+
T Consensus       259 ~~~l  262 (356)
T PRK01889        259 ELQL  262 (356)
T ss_pred             hhcc
Confidence            4444

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.01  E-value=3.3e-06  Score=81.93  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=50.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .+.+|++++..+ ++++|.||||+||||+++++++..-..  +   .|..+.      ..+..++++.|   ++..+++.
T Consensus        19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp------~~~~~i~~~~~---i~~~~~~~   83 (216)
T cd03284          19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVP------ASKAEIGVVDR---IFTRIGAS   83 (216)
T ss_pred             eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeec------cccceecceee---EeccCCch
Confidence            488999999987 999999999999999999998754321  1   232321      11345777765   67888888


Q ss_pred             HHHH
Q 009374          515 EHLH  518 (536)
Q Consensus       515 e~L~  518 (536)
                      |++.
T Consensus        84 ~~ls   87 (216)
T cd03284          84 DDLA   87 (216)
T ss_pred             hhhc
Confidence            8875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.98  E-value=5.5e-06  Score=79.66  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=33.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .+.+|+++++.+|++++|.||||+||||+++++++
T Consensus        17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.97  E-value=1.3e-05  Score=85.31  Aligned_cols=76  Identities=17%  Similarity=0.145  Sum_probs=57.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccH-HHh----hcceEEEcCCCCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM-TNI----QKSIGVCPQFNILWD  509 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~-~~~----~~~ig~~pQ~~~l~~  509 (536)
                      .+++++ +.+.+||.++|+|+||+||||++++|+|..+|+.|.+...|.+-+...+. ++.    ....+++.|.....+
T Consensus       134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p  212 (422)
T TIGR02546       134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRP  212 (422)
T ss_pred             eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCC
Confidence            599999 99999999999999999999999999999999999987765433211111 111    123567778777666


Q ss_pred             CC
Q 009374          510 AL  511 (536)
Q Consensus       510 ~l  511 (536)
                      .+
T Consensus       213 ~~  214 (422)
T TIGR02546       213 SL  214 (422)
T ss_pred             HH
Confidence            65

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.97  E-value=5.9e-06  Score=89.34  Aligned_cols=61  Identities=25%  Similarity=0.391  Sum_probs=54.5

Q ss_pred             eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++.++..               .+++++++.+..|+.++++|+||+||||+++.|.|+++|.+|+..+++..|
T Consensus       188 ~d~~~v~Gq~---------------~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        188 HDLSDVIGQE---------------QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             cCeEEEECcH---------------HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            4777777543               589999999999999999999999999999999999999999998887655

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=97.97  E-value=5.4e-06  Score=87.75  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc---cEEEEcCEecCCcc--cHHHhhcceEEEcCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDALIYGFSIRSSV--SMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~---G~i~i~g~~i~~~~--~~~~~~~~ig~~pQ~~~  506 (536)
                      .|+|.+ +.+.+||+++|+|+||+||||++++|+|+.+|+.   |.|-.+|.++....  ....-.+..+++.|...
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a  239 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA  239 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence            478877 9999999999999999999999999999999986   89999998873210  01112245788888744

>PRK06315 type III secretion system ATPase; Provisional

Probab=97.95  E-value=7.1e-06  Score=87.08  Aligned_cols=48  Identities=17%  Similarity=0.353  Sum_probs=41.1

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcC
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYG  482 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g  482 (536)
                      +.|+|++ +.+.+||.++|+|+||+||||++++|+|..++.+ |.+...|
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            3699998 9999999999999999999999999999985444 5566544

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=7.8e-06  Score=86.09  Aligned_cols=106  Identities=18%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.+++.++++.|..+.             .....+++++++.-.-.+.+|+||+||||+++++.|...|++|.+.+.+ 
T Consensus       360 ~p~l~i~~V~f~y~p~~-------------y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-  425 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSE-------------YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-  425 (582)
T ss_pred             CCeeEEEeeeccCCCcc-------------hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-
Confidence            45789999999986541             1578999999999999999999999999999999999999999987653 


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                                 |+++||-.|+-+-|-++.|-+--.+-+..-|.+++++++-
T Consensus       426 -----------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~h  465 (582)
T KOG0062|consen  426 -----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRH  465 (582)
T ss_pred             -----------cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHH
Confidence                       5679999999887777766665555555568888877654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.94  E-value=7.1e-06  Score=85.45  Aligned_cols=74  Identities=26%  Similarity=0.459  Sum_probs=54.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .++++.++.+.+|++++|+||||+|||||+..|++......|.                  ++++++..+..   .....
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~------------------~~V~lit~D~~---R~ga~  183 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA------------------SKVALLTTDSY---RIGGH  183 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------CeEEEEecccc---cccHH
Confidence            4678888889999999999999999999999999865322221                  23555553322   23677


Q ss_pred             HHHHHHHHhcCCChH
Q 009374          515 EHLHLFANIKGLPLD  529 (536)
Q Consensus       515 e~L~~~~~lkg~~~~  529 (536)
                      |+|..|+++.|++..
T Consensus       184 EqL~~~a~~~gv~~~  198 (374)
T PRK14722        184 EQLRIFGKILGVPVH  198 (374)
T ss_pred             HHHHHHHHHcCCceE
Confidence            888888888887643

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.94  E-value=7.2e-06  Score=79.80  Aligned_cols=71  Identities=18%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcccc--CccEEEE---cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPV--TGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      ++||.|+|||||||+.+.|.+.+.+  .+|++.+   +|+-.    ... .++..|.. |.....+.+++...+....++
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~----~~~-~~~~~~~~-~~~g~p~~~d~~~l~~~L~~l   74 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY----PNK-ELIERGLM-DRKGFPESYDMEALLKFLKDI   74 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC----cHH-HHHHhhhh-hcCCCcccCCHHHHHHHHHHH
Confidence            5799999999999999999999875  5566665   66532    111 22345555 544556777887777777777


Q ss_pred             cC
Q 009374          524 KG  525 (536)
Q Consensus       524 kg  525 (536)
                      +.
T Consensus        75 ~~   76 (220)
T cd02025          75 KS   76 (220)
T ss_pred             HC
Confidence            63

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.93  E-value=1e-05  Score=85.90  Aligned_cols=49  Identities=20%  Similarity=0.347  Sum_probs=46.2

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .+++++ +.+.+||+++|+|+||+||||++++++|...++.|.+...|..
T Consensus       152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer  200 (441)
T PRK09099        152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER  200 (441)
T ss_pred             eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence            599999 9999999999999999999999999999999999999888854

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.89  E-value=1.4e-05  Score=61.13  Aligned_cols=39  Identities=21%  Similarity=0.397  Sum_probs=31.2

Q ss_pred             eeceeEEEec-CcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374          437 IKGLWVNIAK-DQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (536)
Q Consensus       437 l~~lsl~v~~-gei~~LlG~NGaGKSTll~~l~g~~~pt~  475 (536)
                      .++-++++.+ |.++.|.|+|||||||++.++.=++-+..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4556677775 56999999999999999999987765543

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=1.3e-05  Score=89.97  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=36.0

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      ++++.++.+.+|++++|+||||+|||||+..|++.+....|
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G  214 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG  214 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence            56777777888999999999999999999999998866655

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.85  E-value=1.6e-05  Score=84.05  Aligned_cols=50  Identities=20%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|++ .++.+.+||.++|+|+||+|||||+++|++..+|+.|.+.+.|..-
T Consensus       129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~  178 (418)
T TIGR03498       129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERG  178 (418)
T ss_pred             EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeec
Confidence            4776 6999999999999999999999999999999999999998888754

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=1.2e-05  Score=84.93  Aligned_cols=28  Identities=39%  Similarity=0.697  Sum_probs=25.6

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.+|++++|+||||+|||||++.|+|..
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999863

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.84  E-value=1.5e-05  Score=85.06  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=45.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .++|++ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|..
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r  200 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER  200 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence            599999 9999999999999999999999999999999998877776654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.84  E-value=2e-05  Score=83.32  Aligned_cols=71  Identities=21%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccH-------HHhhcceEEEcCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM-------TNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~-------~~~~~~ig~~pQ~~~  506 (536)
                      .++|++ +.+.+||+++|+|+||+||||++++|++..+++.|.+...|...+...+.       +..++.+-++.+.|.
T Consensus       126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~  203 (413)
T TIGR03497       126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQ  203 (413)
T ss_pred             eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCC
Confidence            599999 99999999999999999999999999999999999988888654211110       113456778888753

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.84  E-value=2.1e-05  Score=83.27  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++.+.+++.|...              ..++|++ +.+.+||.++|+|+||+||||++++|+|..+|+.|.+.+.|+..
T Consensus       130 ~~~r~~i~~~l~TG--------------iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg  194 (432)
T PRK06793        130 AFEREEITDVFETG--------------IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG  194 (432)
T ss_pred             chheechhhccCCC--------------CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc
Confidence            45666777777532              2589985 99999999999999999999999999999999999998877654

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.81  E-value=1.3e-05  Score=85.15  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=37.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt  474 (536)
                      .|+|++ +.+.+||.++|+|+||+|||||+++|+|...|+
T Consensus       157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            699999 999999999999999999999999999998776

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.81  E-value=3.7e-05  Score=89.09  Aligned_cols=32  Identities=31%  Similarity=0.512  Sum_probs=30.8

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l  467 (536)
                      .|+|+|++|++||++||.|+||||||||++.+
T Consensus       624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence            69999999999999999999999999999876

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.80  E-value=1.6e-05  Score=76.29  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=27.5

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      -..++++.+|++++|.|||||||||++++|++
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence            34456666899999999999999999999994

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00098 GTPase RsgA; Reviewed

Probab=97.80  E-value=3.1e-05  Score=78.91  Aligned_cols=76  Identities=20%  Similarity=0.214  Sum_probs=56.4

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHh-hcceEEEcCCCCCC----CCCCHHHHH
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNI-QKSIGVCPQFNILW----DALSGEEHL  517 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~-~~~ig~~pQ~~~l~----~~lTv~e~L  517 (536)
                      +|++++++|+||+|||||+|.|.|...+..|++..   .|...+.  ..+.. ....|++...+.+.    ..++..|-.
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~--~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~  240 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTT--HVELYDLPGGGLLIDTPGFSSFGLHDLEAEELE  240 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccc--cEEEEEcCCCcEEEECCCcCccCCCCCCHHHHH
Confidence            58999999999999999999999999999999986   4444321  11111 12467888888777    578887777


Q ss_pred             HHHHHh
Q 009374          518 HLFANI  523 (536)
Q Consensus       518 ~~~~~l  523 (536)
                      ..|..+
T Consensus       241 ~~f~~~  246 (298)
T PRK00098        241 HYFPEF  246 (298)
T ss_pred             HHHHHH
Confidence            766554

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.79  E-value=1.9e-05  Score=78.19  Aligned_cols=34  Identities=21%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~  481 (536)
                      .+++|+|||||||||++.+|.++..+.+|++...
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~   56 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK   56 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence            4999999999999999999999998877776544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.77  E-value=1.6e-05  Score=76.27  Aligned_cols=39  Identities=33%  Similarity=0.577  Sum_probs=33.9

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccc------------cCccEEEEcCEec
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI  485 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~------------pt~G~i~i~g~~i  485 (536)
                      ++|++++|+||+||||||++++|.+..+            |..|+  ++|.+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~   53 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY   53 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence            5899999999999999999999999975            77787  567664

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.77  E-value=2.2e-05  Score=85.27  Aligned_cols=65  Identities=18%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      -++||.|+|||||||+.++|.+.. |..|.|.++|+.-.        .+.+++.+|++.+++..++.|||.-..
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~--------~~~i~~nfD~P~a~D~d~L~enL~~Lr  130 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS--------SRIIDGNFDDPRLTDYDTLLDNIHDLK  130 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc--------hhhhCccCCChhhcchhHHHHHHHHHh
Confidence            489999999999999999999997 57899999997521        123567889988898889999986544

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.76  E-value=2.1e-05  Score=76.48  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC-ccccCccEE
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGDA  478 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g-~~~pt~G~i  478 (536)
                      .+.+|+++++.+|++++|.||||+||||+++++++ .+.+..|..
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~   63 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF   63 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence            47899999999999999999999999999999999 566667753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.76  E-value=3.2e-05  Score=81.84  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .++|.+ +.+.+||+++|+|+||+|||||+++|++..+|+.+.+...|..
T Consensus       126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            589999 9999999999999999999999999999999988776666654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05922 type III secretion system ATPase; Validated

Probab=97.75  E-value=3.2e-05  Score=81.87  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .++|.+ +.+.+||.++|+|+||+|||||+++|+|..+++.|.+...|..
T Consensus       146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer  194 (434)
T PRK05922        146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER  194 (434)
T ss_pred             eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence            588887 9999999999999999999999999999999999988666643

>PLN02796 D-glycerate 3-kinase

Probab=97.75  E-value=9.7e-06  Score=83.09  Aligned_cols=51  Identities=22%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             eeeceeEEE---ecCcE-----EEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecC
Q 009374          436 AIKGLWVNI---AKDQL-----FCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR  486 (536)
Q Consensus       436 al~~lsl~v---~~gei-----~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~  486 (536)
                      +++++++.+   ++|+.     +||.|++||||||+.+.|.+++++.   .|.+.++|..+.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            677777776   56665     9999999999999999999999875   588999998874

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.72  E-value=7.9e-05  Score=69.82  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccEEEE-----------cCEecCCc--ccHH-Hh-hcceEEEcCCCCCCCCC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI-----------YGFSIRSS--VSMT-NI-QKSIGVCPQFNILWDAL  511 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i-----------~g~~i~~~--~~~~-~~-~~~ig~~pQ~~~l~~~l  511 (536)
                      |++++|+|+|||||||+++.|++.+.+. |.+.+           +|.+....  .+.. .. .+.++...|...++...
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   79 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI   79 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence            6789999999999999999999987654 54433           33332111  1111 12 24588999998887777


Q ss_pred             CHH
Q 009374          512 SGE  514 (536)
Q Consensus       512 Tv~  514 (536)
                      ++.
T Consensus        80 ~~~   82 (179)
T TIGR02322        80 PAE   82 (179)
T ss_pred             hHH
Confidence            764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00879 Sar1 Sar1 subfamily

Probab=97.70  E-value=2.7e-05  Score=73.50  Aligned_cols=49  Identities=22%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC--------ccccCccEEEEcCEec
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--------ITPVTGGDALIYGFSI  485 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g--------~~~pt~G~i~i~g~~i  485 (536)
                      +++++++..+++++ +++|++|||||||++.+++        ...|+.+++.++|.++
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~   65 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF   65 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence            78899999888888 9999999999999999998        4556778888887653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.70  E-value=3e-05  Score=82.19  Aligned_cols=51  Identities=22%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      .+++++ +.+.+||+++|+|+||+||||++++|++...++.+.+...|..-+
T Consensus       146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr  196 (434)
T PRK08472        146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR  196 (434)
T ss_pred             HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence            589999 999999999999999999999999999999888898888887653

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.69  E-value=2.8e-05  Score=80.86  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=32.5

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      .++|+++||||+||-||||.+++|+|.+.|.=|+-
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~  131 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY  131 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence            57899999999999999999999999999987763

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.67  E-value=3.3e-05  Score=73.90  Aligned_cols=56  Identities=20%  Similarity=0.260  Sum_probs=43.4

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      ++|+++++.|+|||||||+.+.|.+.+.+. .|.+.++|.+++.     .....+||.+|+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~-----~~~~~~~~~~~~~   78 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH-----GLCSDLGFSDADR   78 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh-----hhhhcCCcCcccH
Confidence            567899999999999999999999977654 4689999977631     2223477777764

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.65  E-value=2.7e-05  Score=79.75  Aligned_cols=77  Identities=18%  Similarity=0.168  Sum_probs=53.7

Q ss_pred             eeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCHHHHHH
Q 009374          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSGEEHLH  518 (536)
Q Consensus       440 lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv~e~L~  518 (536)
                      +++.++.|+.+++.|++||||||++++|++++++..|.+.+..  ... ..... +..+++..+... -....|..|.+.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~E-l~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~  212 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TRE-IFLPH-PNYVHLFYSKGGQGLAKVTPKDLLQ  212 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccc-cCCCC-CCEEEEEecCCCCCcCccCHHHHHH
Confidence            6788999999999999999999999999999999999888853  210 01111 334555444321 134567777665


Q ss_pred             HH
Q 009374          519 LF  520 (536)
Q Consensus       519 ~~  520 (536)
                      ..
T Consensus       213 ~~  214 (308)
T TIGR02788       213 SC  214 (308)
T ss_pred             HH
Confidence            44

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.61  E-value=3.1e-05  Score=74.11  Aligned_cols=70  Identities=21%  Similarity=0.203  Sum_probs=43.6

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE--cCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI--YGFSIRSSVSMTNIQKSIGVCPQFNILWD  509 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i--~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~  509 (536)
                      .++++++++.+| +.+++|+|||||||++..|.....   |+...  .|..+........-...+.+.+|+..+++
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~   82 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA   82 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC
Confidence            567788888877 889999999999999999875433   22221  12211000000111345888888866665

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.61  E-value=5.4e-05  Score=80.04  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=36.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt  474 (536)
                      .|+|.+ +.+.+||..+|+|+||+||||++++|++...++
T Consensus       151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            588888 999999999999999999999999999988774

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.60  E-value=6.3e-05  Score=90.68  Aligned_cols=48  Identities=19%  Similarity=0.106  Sum_probs=41.7

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      -+.+..|++.+| +++|+|+|||||||+|++|.+++.|..|.+.+++.+
T Consensus        17 ~~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         17 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             CccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            345567888875 999999999999999999999999999999888764

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.58  E-value=4.9e-05  Score=76.42  Aligned_cols=54  Identities=19%  Similarity=0.154  Sum_probs=38.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      ++||.|+|||||||+.++|++++++..|.+.. +.+... .+. ..++..|+.++++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~-~Dd~~~-~~~-~~r~~~g~~~~~p   54 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC-LDDYHS-LDR-KGRKETGITALDP   54 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE-Cccccc-CCH-HHHHHhhcccccc
Confidence            47999999999999999999999988775543 334421 122 2245577777753

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.55  E-value=6e-05  Score=72.22  Aligned_cols=57  Identities=23%  Similarity=0.202  Sum_probs=39.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNIL  507 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l  507 (536)
                      .++|.|++||||||+++.+.+.+++..| +.+...+.... ...++.+..|+++|++.+
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~   59 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQ-EDAEFLVKNSALPPERIL   59 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCCh-hHHHHHHHcCCCCcCcee
Confidence            5799999999999999999999887655 44444455321 223334556888887653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00606 rad50 rad50

Probab=97.54  E-value=9.4e-05  Score=89.84  Aligned_cols=39  Identities=46%  Similarity=0.737  Sum_probs=34.4

Q ss_pred             CcEEEEeCCCCCchhHHHHhH----cCccccC-ccEEEEcCEec
Q 009374          447 DQLFCLLGPNGAGKTTTISCL----TGITPVT-GGDALIYGFSI  485 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l----~g~~~pt-~G~i~i~g~~i  485 (536)
                      ..+++|+|||||||||++.+|    +|..+|. .|.++++|.++
T Consensus        28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~   71 (1311)
T TIGR00606        28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV   71 (1311)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence            459999999999999999999    6999995 79989987665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00767 rho transcription termination factor Rho

Probab=97.53  E-value=0.00015  Score=75.66  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceee-----------ceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK-----------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~-----------~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      ..+.+++|+..|++.+              .+|+           |+.+.+.+||..+|+||.|+||||++++|...+..
T Consensus       129 ~ri~Fe~LTf~YP~er--------------~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       129 NRVLFENLTPLYPNER--------------LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CCeEEEEeeecCCCcc--------------ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            3589999999998642              3665           99999999999999999999999999999998654


Q ss_pred             C
Q 009374          474 T  474 (536)
Q Consensus       474 t  474 (536)
                      .
T Consensus       195 n  195 (415)
T TIGR00767       195 N  195 (415)
T ss_pred             c
Confidence            3

Members of this family differ in the specificity of RNA binding.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.52  E-value=9.8e-05  Score=77.01  Aligned_cols=60  Identities=18%  Similarity=0.280  Sum_probs=41.9

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccC--cc-EEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT--GG-DALIYGFSIRSSVSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt--~G-~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~  506 (536)
                      ++|+.+.+.||||||||||++.|.+.+.++  ++ .|.....++.  ...+..++..+.|.|...
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE--~~~~~~~~~~~~v~Q~~v  194 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE--FVYDEIETISASVCQSEI  194 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce--Eeccccccccceeeeeec
Confidence            589999999999999999999999988533  33 5544443431  223334445688888754

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.52  E-value=2.9e-05  Score=71.97  Aligned_cols=63  Identities=17%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             eCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          453 LGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       453 lG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      +|++||||||+.++|++.+    |.+.++|..+.   .....+ ...|+.+|+....+.+++.++..+-..
T Consensus         1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   64 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH---PRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQ   64 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC---chhhhccccCCCCCChhhHHHHHHHHHHHHHHHH
Confidence            5999999999999999987    67888884431   112233 356888998877888888888877443

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.49  E-value=0.00011  Score=71.69  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .+.+|++++..++++++|.||||+||||++++++
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            4789999999999999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06820 type III secretion system ATPase; Validated

Probab=97.46  E-value=0.00014  Score=77.20  Aligned_cols=49  Identities=20%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +.|+|++ +.+.+||..+|+|+||+|||||+++|++...|+.+-+-.-|.
T Consensus       151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe  199 (440)
T PRK06820        151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE  199 (440)
T ss_pred             Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence            3699999 999999999999999999999999999999888754433343

>cd04155 Arl3 Arl3 subfamily

Probab=97.44  E-value=0.00014  Score=67.31  Aligned_cols=37  Identities=32%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc----cccCcc----EEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI----TPVTGG----DALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~----~~pt~G----~i~i~g~~i  485 (536)
                      .++++|+|||||||+++.++|.    ..||.|    .+..+|.++
T Consensus        16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~   60 (173)
T cd04155          16 RILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL   60 (173)
T ss_pred             EEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence            4789999999999999999997    568889    788877754

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.44  E-value=1.4e-05  Score=75.25  Aligned_cols=69  Identities=19%  Similarity=0.154  Sum_probs=48.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHc---CccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          447 DQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ..+++++|++||||||+.+.|+   |+..++.|++.......  ..   ...+.++.+.|...+.+..++.+++.-.
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~   74 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS--GS---ERGKQLQAIMESGDLVPLDTVLDLLKDA   74 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc--CC---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999   88888888865432111  11   1123345556666677777888877643

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.44  E-value=0.00013  Score=77.49  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=37.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~  475 (536)
                      .++|++ +.+.+||.++|+|+||+||||++++|++...++-
T Consensus       151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            599999 9999999999999999999999999999998864

>TIGR00368 Mg chelatase-related protein

Probab=97.43  E-value=7.7e-05  Score=80.98  Aligned_cols=51  Identities=35%  Similarity=0.447  Sum_probs=48.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++++.+..|+.+.|+|+||+||||+++++.|+++|.+|++.+++..+
T Consensus       199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i  249 (499)
T TIGR00368       199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARI  249 (499)
T ss_pred             HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccc
Confidence            589999999999999999999999999999999999999999999887665

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.42  E-value=7.8e-05  Score=73.07  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=35.5

Q ss_pred             EecCcEEEEeCCCCCchhHH-HHhHcCccccCccEEEEcCEe
Q 009374          444 IAKDQLFCLLGPNGAGKTTT-ISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTl-l~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +++|+++.|.|+||+||||+ ++++.+..++....+++....
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~   62 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL   62 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            78899999999999999999 799999887777778887543

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.41  E-value=0.00013  Score=88.70  Aligned_cols=42  Identities=19%  Similarity=0.440  Sum_probs=35.7

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i  480 (536)
                      +.++|+||++++||+++|.|+||||||||+..+  +.+  .|++.+
T Consensus       949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~  990 (1809)
T PRK00635        949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAY  990 (1809)
T ss_pred             ccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEee
Confidence            469999999999999999999999999977766  333  788764

>PRK00064 recF recombination protein F; Reviewed

Probab=97.34  E-value=0.00048  Score=72.17  Aligned_cols=86  Identities=19%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC---------------------------c-------------
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---------------------------G-------------  475 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt---------------------------~-------------  475 (536)
                      -++++++++.+| +.+++|+|||||||++.+|..+....                           .             
T Consensus        13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~~~s~r~~~~~~li~~g~~~~~v~~~~~~~~~~~~i~~~~~~~~   91 (361)
T PRK00064         13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAPGRSHRTARDKELIRFGAEAAVIHGRVEKGGRELPLGLEIDKKG   91 (361)
T ss_pred             cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCCCCCccCCChhHHHhcCCCcEEEEEEEEeCCcEEEEEEEEEcCC
Confidence            456788888776 99999999999999999987543211                           0             


Q ss_pred             -cEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          476 -GDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       476 -G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                       ..+.+||..+.+..+.......+.++||+..+.. .+..++..|....
T Consensus        92 ~~~~~ing~~~~~~~~l~~~~~~v~~~p~~~~l~~-~~p~~RR~fLD~~  139 (361)
T PRK00064         92 GRKVRINGEPQRKLAELAGLLNVVLFTPEDLRLVK-GGPSERRRFLDRL  139 (361)
T ss_pred             ceEEEECCccccCHHHHhhhccEEEEccchhhhhc-CCHHHHHHHHHHH
Confidence             1233444433222223333456889999987765 4677777775544

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.34  E-value=0.00015  Score=83.94  Aligned_cols=30  Identities=33%  Similarity=0.601  Sum_probs=29.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS  465 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~  465 (536)
                      .|+|+|++|++||+++|.|+||||||||++
T Consensus       622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            699999999999999999999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN02165 adenylate isopentenyltransferase

Probab=97.32  E-value=0.00027  Score=72.26  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=35.2

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc---cCccEE-EEcCEecCC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDA-LIYGFSIRS  487 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~---pt~G~i-~i~g~~i~~  487 (536)
                      +|++++|+||||||||||...|++.+.   .+.+++ ..+|.||.+
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgT   87 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITT   87 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCccccc
Confidence            467999999999999999999999876   567777 348888853

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.28  E-value=0.00014  Score=69.38  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ++||.|++||||||+.++|.+++  ..|.+.+-+.|
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D   34 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD   34 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence            57999999999999999999988  34555554444

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.28  E-value=0.00022  Score=86.84  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHH---------hHcCccc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS---------CLTGITP  472 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~---------~l~g~~~  472 (536)
                      ..|+++|++|++||+++|.|+||||||||++         .|.|...
T Consensus       609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~  655 (1809)
T PRK00635        609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFC  655 (1809)
T ss_pred             CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            3799999999999999999999999999999         6777543

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=97.24  E-value=0.11  Score=50.58  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHH
Q 009374          132 FQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTG  211 (536)
Q Consensus       132 ~~v~~iV~EKe~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~  211 (536)
                      .....+++|||++.-+.++.+.++...|-++..+...+..++..++..+++.+++.+.  ..+....++..+++......
T Consensus        54 ~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~  131 (232)
T TIGR00025        54 GQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRF--AGGALTALTLGAVIIALGTA  131 (232)
T ss_pred             HHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCchHHHHHHHHHHHHHHHH
Confidence            3345689999999999999999999999999987776666555444444444444332  12233333333344444455


Q ss_pred             HHHHHHHhcCChhHH---HHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHH
Q 009374          212 FAFMFSAFISKSSSS---TTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS  278 (536)
Q Consensus       212 ~~~~~S~fF~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~  278 (536)
                      ++.+++.+....+.+   ..+..++.+   ...+++-..+|. +..+..++.+..+.|......++....
T Consensus       132 ~~~~i~~~~~~~~~~~~~~~i~~~~~~---p~~~lSG~~~P~-~~mP~~lq~i~~~~P~t~~~~~~r~~~  197 (232)
T TIGR00025       132 LFAALGLVAGGTLQAEIVLAVANLVWF---IFALLSAGLVPL-NLIPTWIKWFVRVQPSSYATEALRQAA  197 (232)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHhheeeec-ccccHHHHHHHHhCcHHHHHHHHHHHH
Confidence            666677766544333   222211111   111111111222 234556778888889877777766553

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.23  E-value=0.00026  Score=63.67  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc--------------cccCccEEEEcCEecC
Q 009374          450 FCLLGPNGAGKTTTISCLTGI--------------TPVTGGDALIYGFSIR  486 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~--------------~~pt~G~i~i~g~~i~  486 (536)
                      ++|+|++|||||||++.++|.              ..++.|.+.+...|..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~   52 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLG   52 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECC
Confidence            589999999999999999998              3444556666666653

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.23  E-value=0.00023  Score=67.28  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=28.2

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++++++.+| +++|.|+||+||||++.+|.-.+
T Consensus         9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L   43 (202)
T PF13476_consen    9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL   43 (202)
T ss_dssp             TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            467888888765 99999999999999999886554

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.21  E-value=0.00027  Score=74.00  Aligned_cols=39  Identities=28%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIR  486 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~  486 (536)
                      =++||.|++||||||+.+.|.++++++   .|.|.++|..+.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt  254 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLT  254 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCC
Confidence            478999999999999999999999876   788999998874

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.17  E-value=0.00028  Score=66.04  Aligned_cols=26  Identities=35%  Similarity=0.629  Sum_probs=24.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      |++++|+|||||||||+++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.15  E-value=0.00028  Score=67.33  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=29.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      ++++|++|+||||++|+|+|...+++|.+..+.
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~   36 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGV   36 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCccccCc
Confidence            689999999999999999999888888776653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.13  E-value=0.00038  Score=70.02  Aligned_cols=40  Identities=25%  Similarity=0.169  Sum_probs=34.9

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.+.+++|+|++|||||||++.+.+.++...+.+.|.|.-
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~  141 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ  141 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc
Confidence            4578999999999999999999999888777888888753

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.13  E-value=0.00058  Score=65.96  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=31.5

Q ss_pred             EEEEeCCCCCchhHHH-HhHcCcccc-----------------CccEEEEcCEecC
Q 009374          449 LFCLLGPNGAGKTTTI-SCLTGITPV-----------------TGGDALIYGFSIR  486 (536)
Q Consensus       449 i~~LlG~NGaGKSTll-~~l~g~~~p-----------------t~G~i~i~g~~i~  486 (536)
                      -++|+|+||+||||++ +.++|..++                 +.|.+.+++.|+.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~   66 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTA   66 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECC
Confidence            3689999999999999 689998764                 4678888888874

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.11  E-value=0.00047  Score=66.95  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=33.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .+-+|++++..+|++++|.||||+||||+++++++.
T Consensus        18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            478999999999999999999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=97.10  E-value=0.18  Score=49.17  Aligned_cols=135  Identities=9%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHH
Q 009374          135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAF  214 (536)
Q Consensus       135 ~~iV~EKe~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~  214 (536)
                      ..++.|||++.-+-+.....+...|+++..+...+..++..+++.++...+. . .........+++.++++++...+++
T Consensus        68 ~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~lg~  145 (236)
T TIGR01247        68 ISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVA-I-LKPSGVIPTLVLAFIVGVALSGLGV  145 (236)
T ss_pred             hHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4567899988776677788999999999999988877776555444333221 1 1112233344455567888899999


Q ss_pred             HHHHhcCChhHHHHHH-HHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHH
Q 009374          215 MFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQL  276 (536)
Q Consensus       215 ~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~  276 (536)
                      +++.++++.+.+..+. .+.....++...    .+|. +..+..++.+..+.|......++..
T Consensus       146 ~l~~~~~~~~~~~~i~~~~~~~l~~lsG~----~~P~-~~~P~~~~~i~~~~P~~~~~~~~r~  203 (236)
T TIGR01247       146 AIAARMDSMEGFQIIMSMLMLPMFFLSGA----FYPI-TTMPAWMQGLAKINPLTYAVDGARY  203 (236)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hcCH-HhCHHHHHHHHHHCcHHHHHHHHHH
Confidence            9999888876554333 222111111111    1222 1233456777778887665555544

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.07  E-value=0.00045  Score=63.50  Aligned_cols=34  Identities=29%  Similarity=0.412  Sum_probs=24.7

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~  479 (536)
                      ++++.+|+|++|+|||||+|.|.+-.....|+|.
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            4589999999999999999999998765556654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.03  E-value=0.00028  Score=71.99  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=42.4

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .++++++....+++++++.|++||||||+++.+++.......++.+-+.|
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D   71 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD   71 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            58999999999999999999999999999999999877665566554444

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.98  E-value=0.0005  Score=64.21  Aligned_cols=40  Identities=25%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEE-EcCEe
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL-IYGFS  484 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~-i~g~~  484 (536)
                      ++|+++++.|++||||||+.+.|++.+.+..+++. +++.+
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~   42 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA   42 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence            57999999999999999999999999987666654 66644

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.94  E-value=0.00036  Score=69.84  Aligned_cols=49  Identities=24%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             eeeceeEEEe-------cCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEcCEe
Q 009374          436 AIKGLWVNIA-------KDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFS  484 (536)
Q Consensus       436 al~~lsl~v~-------~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~g~~  484 (536)
                      +++++++.+.       +|+.++++|+||+||||++++|++....   ..|-+..+++.
T Consensus        57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4677777765       4589999999999999999999998643   34555555543

>PRK07429 phosphoribulokinase; Provisional

Probab=96.93  E-value=0.00071  Score=69.68  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEE-EEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      ++||.|++||||||+.+.|++++.++.+.+ ..++.  . ..+ ++.|+..|+.++++
T Consensus        10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~--~-~~~-~~~r~~~g~~~l~p   63 (327)
T PRK07429         10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY--H-SYD-RKQRKELGITALDP   63 (327)
T ss_pred             EEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc--c-cCC-HHHHHhcCCcccCc
Confidence            789999999999999999999998886654 33332  1 112 23356678776653

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.91  E-value=0.00053  Score=62.28  Aligned_cols=28  Identities=25%  Similarity=0.340  Sum_probs=24.3

Q ss_pred             EEEeCCCCCchhHHHHhHc--CccccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLT--GITPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~--g~~~pt~G~  477 (536)
                      ++|+|++|||||||++.|+  +..++.+|+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~   31 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKT   31 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence            5899999999999999999  676666665

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=96.89  E-value=0.0018  Score=67.28  Aligned_cols=41  Identities=32%  Similarity=0.501  Sum_probs=35.6

Q ss_pred             eeeceeEEEecC-----cEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          436 AIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       436 al~~lsl~v~~g-----ei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      -+-+..|.|..|     |+...||.||-||||+++|++|.++|++|
T Consensus       351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~  396 (592)
T KOG0063|consen  351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG  396 (592)
T ss_pred             eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc
Confidence            556667777776     57899999999999999999999999986

>TIGR01069 mutS2 MutS2 family protein

Probab=96.85  E-value=0.00054  Score=78.34  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=32.8

Q ss_pred             ceeEEEecC-cEEEEeCCCCCchhHHHHhHcCc-cccCcc
Q 009374          439 GLWVNIAKD-QLFCLLGPNGAGKTTTISCLTGI-TPVTGG  476 (536)
Q Consensus       439 ~lsl~v~~g-ei~~LlG~NGaGKSTll~~l~g~-~~pt~G  476 (536)
                      .+|+.+.++ ++++|.||||+||||++++++|. +.+..|
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            378888877 99999999999999999999998 455555

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.83  E-value=0.0011  Score=68.76  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g~  483 (536)
                      -|.++|.+.+-.+.               ....+-||.|-.|.-+||+||||-|||||++.|+..  --|..=++.++.+
T Consensus       264 DIKiEnF~ISA~Gk---------------~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQ  328 (807)
T KOG0066|consen  264 DIKIENFDISAQGK---------------LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQ  328 (807)
T ss_pred             cceeeeeeeecccc---------------eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeee
Confidence            46777776665442               578999999999999999999999999999999864  3355566777776


Q ss_pred             ec
Q 009374          484 SI  485 (536)
Q Consensus       484 ~i  485 (536)
                      .+
T Consensus       329 Ev  330 (807)
T KOG0066|consen  329 EV  330 (807)
T ss_pred             ee
Confidence            65

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.82  E-value=0.0008  Score=64.78  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .++.+++|.|++|||||||.+.|.+.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999999999883

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.79  E-value=0.0019  Score=56.26  Aligned_cols=40  Identities=33%  Similarity=0.462  Sum_probs=33.0

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcCEec
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSI  485 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g~~i  485 (536)
                      +++.+.|.||+|+||||+++.++....... +-+.++....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            367899999999999999999999987665 5677776543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=96.78  E-value=0.0012  Score=70.14  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~  475 (536)
                      .=|.-+.+.+||.++|+|+||+||||++++|++...|+.
T Consensus       148 ~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~  186 (442)
T PRK08927        148 ALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV  186 (442)
T ss_pred             EEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence            445678999999999999999999999999999998874

>TIGR00017 cmk cytidylate kinase

Probab=96.78  E-value=0.0006  Score=66.21  Aligned_cols=55  Identities=18%  Similarity=0.347  Sum_probs=37.3

Q ss_pred             EEEEeCCCCCchhHHHHhHc---CccccCccEEE--------EcCEecCCcccHHHhhcceEEEcC
Q 009374          449 LFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~--------i~g~~i~~~~~~~~~~~~ig~~pQ  503 (536)
                      +++|.||+||||||+.+.|+   |+..+++|.++        ..|.+..+.....+..+..|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   69 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI   69 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence            68999999999999999999   55558888775        344444322223334455565554

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=96.77  E-value=0.43  Score=47.34  Aligned_cols=136  Identities=12%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             HHHHHHHHhHHHHhHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 009374          136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (536)
Q Consensus       136 ~iV~EKe~~~k~~m~~mGl~~~~yWls~~i~~~~~~~i~~~~~ii~~~~~~~~~~~~~~~~~~~l~~~l~~~s~i~~~~~  215 (536)
                      .+.+|||+|.-+.+..+-++...+-++..++..+..++..+++.++...+...  ...+...++..+++++++...++++
T Consensus        81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~--~~~~~l~~~~~~ll~~l~~~~lg~~  158 (253)
T TIGR01291        81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYI--EWWSLIYILPVIALTGLAFASLSML  158 (253)
T ss_pred             HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999988777766655444444444321  2233444455667788888899999


Q ss_pred             HHHhcCChhHHHHHH-HHHHHHHHHHHHHHhhcCCCCcccchhhhhhheecChhHHHHHHHHHH
Q 009374          216 FSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS  278 (536)
Q Consensus       216 ~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~  278 (536)
                      ++.+.++.+.+..+. ++...+.++...    .+|.+ ..+..++.+..+.|-.....++....
T Consensus       159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~----~~P~~-~mP~~lq~i~~~nPlt~~v~~~R~~~  217 (253)
T TIGR01291       159 VAALAPSYAYFAFYQSLVITPMLFLSGV----VFPVF-QLNDVIQGMTHFLPLAHSIDDIRPVM  217 (253)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHH----hcCHH-hChHHHHHHHHHCcHHHHHHHHHHHH
Confidence            999887776554332 222211111111    12211 23445677777889887777766553

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.76  E-value=0.0022  Score=61.36  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcccc-CccEEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPV-TGGDALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~i~g~~i  485 (536)
                      ++.+.||+||||||+++.|.+...+ ..|.|...+.++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~   40 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI   40 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence            6789999999999999998888764 356766555444

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=96.76  E-value=0.0013  Score=63.07  Aligned_cols=30  Identities=20%  Similarity=0.246  Sum_probs=24.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc-ccCccEE
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT-PVTGGDA  478 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~-~pt~G~i  478 (536)
                      .+|++||+|+|||||+++|+|.. ....+++
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~   32 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEEL   32 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeE
Confidence            47999999999999999999984 3444444

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.76  E-value=0.0012  Score=63.97  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      +=+|++++=..+.+..|.||||+||||+++.+..
T Consensus        18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             EcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence            3455555422237899999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.73  E-value=0.0014  Score=71.06  Aligned_cols=44  Identities=23%  Similarity=0.484  Sum_probs=38.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc---CccccCccEEE
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL  479 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~  479 (536)
                      ..+||+.+.. +|.++++.||+||||||+.+.|+   |....++|.++
T Consensus       273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y  319 (512)
T PRK13477        273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY  319 (512)
T ss_pred             EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence            5899999987 88999999999999999999999   66666777765

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.70  E-value=0.0015  Score=64.64  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=34.6

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~  477 (536)
                      |+|.+ +.+.+||..+|+|++|+||||+++++.+......++
T Consensus         6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd   46 (249)
T cd01128           6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPE   46 (249)
T ss_pred             heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCC
Confidence            55433 578999999999999999999999999998876443

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.69  E-value=0.00092  Score=61.74  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~  475 (536)
                      ...+..+.++.+..|.|||||||||+++.+....-..+
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~   49 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQ   49 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            44556666667999999999999999999866554443

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	536
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		5e-06
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-04
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		2e-04
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		4e-04
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		4e-04
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		8e-04
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		8e-04
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-04

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
           HAIKG+ + + + Q+  L+G NGAGKTTT+S + G+     G  +  G  I +  +    
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 495 QKSIGVCPQFNILWDALSGEEHL 517
           +  I + P+   ++  L+  E+L
Sbjct: 80  RXGIALVPEGRRIFPELTVYENL 102

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 429 QKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS 488
           ++      +KG+   I + ++F L+GPNGAGKTTT+  ++ +   + G   ++G ++   
Sbjct: 23  KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE 82
Query: 489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA 521
                ++K I   P+    +  + G E+L   A
Sbjct: 83  PH--EVRKLISYLPEEAGAYRNMQGIEYLRFVA 113

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K +  +I   Q   L+GP G+GKTT ++ L     V  G  L+ G  IR  +  ++++
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLR 428
Query: 496 KSIGVCPQFNILWDALSGE 514
            SIG+  Q  IL+     E
Sbjct: 429 SSIGIVLQDTILFSTTVKE 447

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VSMTNIQ 495
           +KG+ V+I + ++  ++GP+G+GK+T + CL  +     G+ +I G ++++   ++  ++
Sbjct: 19  LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 496 KSIG-VCPQFNILWDALSGEEHLHLFANIKGLPL 528
           + +G V  +FN+         H+ +  NI   P+
Sbjct: 79  EEVGMVFQRFNLF-------PHMTVLNNITLAPM 105

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VSMTNIQ 495
           +KG+ V+I + ++  ++GP+G+GK+T + CL  +     G+ +I G ++++   ++  ++
Sbjct: 40  LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 496 KSIG-VCPQFNI 506
           + +G V  +FN+
Sbjct: 100 EEVGMVFQRFNL 111

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
           + A+  L + I   +   LLGP+G GKTTT+  + G+   T G   IY F  R    +  
Sbjct: 25  FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR--IY-FGDRDVTYLPP 81
Query: 494 IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
             ++I +  Q   +W  ++  E++     IK  P D I
Sbjct: 82  KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI 119

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTN 493
           + A+  L + I   +   LLGP+G GKTTT+  + G+   T G   IY F  R    +  
Sbjct: 24  FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR--IY-FGDRDVTYLPP 80
Query: 494 IQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI 531
             ++I +  Q   +W  ++  E++     IK  P D I
Sbjct: 81  KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI 118

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
            +++G+   I + ++  LLGP+G+GKTT +  + G+   T GD  I G  +     +   
Sbjct: 29  RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV---TDLPPQ 85
Query: 495 QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS 533
           ++++G+  Q   L+  ++  +++      K +P D + +
Sbjct: 86  KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	536
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-26
1sgw_A	214	Putative ABC transporter; structural genomics, P p	6e-24
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	8e-14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	7e-09
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-08
1g6h_A	257	High-affinity branched-chain amino acid transport	9e-08
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	5e-07
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	7e-07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	3e-06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	4e-06
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	6e-06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	5e-05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	6e-05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	8e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	3e-04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	6e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  107 bits (269), Expect = 2e-26
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           AV ++ L K                      +KG+   I + ++F L+GPNGAGKTTT+ 
Sbjct: 15  AVVVKDLRKRIGKKE---------------ILKGISFEIEEGEIFGLIGPNGAGKTTTLR 59

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
            ++ +   + G   ++G ++        ++K I   P+    +  + G E+L   A    
Sbjct: 60  IISTLIKPSSGIVTVFGKNVVE--EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117

Query: 526 LPLDSIK 532
                I+
Sbjct: 118 SSSSEIE 124

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 98.7 bits (247), Expect = 6e-24
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++IR L   +                    ++ + + I K  +    GPNG GKTT + 
Sbjct: 10  KLEIRDLSVGYDKP----------------VLERITMTIEKGNVVNFHGPNGIGKTTLLK 53

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
            ++       G+ +  G  I        ++  I   P+  I+   +S E++L   A++ G
Sbjct: 54  TISTYLKPLKGEIIYNGVPIT------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107

Query: 526 LP 527
           + 
Sbjct: 108 VK 109

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 401 PDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGK 460
              ++ +Q+  + +   G                  +K +   IAK   + L G NGAGK
Sbjct: 16  RGSHMLIQLDQIGRMKQGKT---------------ILKKISWQIAKGDKWILYGLNGAGK 60

Query: 461 TTTISCLTGITPVTGGDALIYGFSI-RSSVSMTNIQKSIGVCPQ 503
           TT ++ L    P T G   ++G    +   S   +++ IG    
Sbjct: 61  TTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH 104

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 30/132 (22%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +Q++ +  T  G           K     +++ + + +   +   +LGPNG+GKTT +  
Sbjct: 2   IQLKNVGITLSG-----------KGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRA 49

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI--- 523
           ++G+ P   G+  I G      + +  I+  I         +  +     + +   +   
Sbjct: 50  ISGLLP-YSGNIFING------MEVRKIRNYIRYSTNLPEAY-EI----GVTVNDIVYLY 97

Query: 524 ---KGLPLDSIK 532
              KGL  D   
Sbjct: 98  EELKGLDRDLFL 109

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 26/85 (30%), Positives = 46/85 (54%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
           HAIKG+ + + + Q+  L+G NGAGKTTT+S + G+     G  +  G  I +  +    
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79

Query: 495 QKSIGVCPQFNILWDALSGEEHLHL 519
           +  I + P+   ++  L+  E+L +
Sbjct: 80  RMGIALVPEGRRIFPELTVYENLMM 104

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 397 RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPN 456
                  ++ ++  G+ K +PG                 +++G+   I + ++  LLGP+
Sbjct: 5   HHHHHHGSMTIEFVGVEKIYPGG--------------ARSVRGVSFQIREGEMVGLLGPS 50

Query: 457 GAGKTTTISCLTGITPVTGGDALIYG 482
           G+GKTT +  + G+   T GD  I G
Sbjct: 51  GSGKTTILRLIAGLERPTKGDVWIGG 76

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 15/77 (19%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           A+ I  L K+F  T                 +  + +++   ++  ++G +G GKTT + 
Sbjct: 4   ALHIGHLSKSFQNTP---------------VLNDISLSLDPGEILFIIGASGCGKTTLLR 48

Query: 466 CLTGITPVTGGDALIYG 482
           CL G      G+  + G
Sbjct: 49  CLAGFEQPDSGEISLSG 65

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           +   +VK F   +               A+ G+ +++ K  +  ++GPNG+GK+T I+ +
Sbjct: 9   RTENIVKYFGEFK---------------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVI 53

Query: 468 TGITPVTGGDALIYGFSI 485
           TG      G        I
Sbjct: 54  TGFLKADEGRVYFENKDI 71

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 28/100 (28%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           N A+ +  L   +     +               + L  ++ K  +  +LG NG GK+T 
Sbjct: 2   NKALSVENLGFYYQAENFL--------------FQQLNFDLNKGDILAVLGQNGCGKSTL 47

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQ 503
           +  L GI     G        I        + +SIG  PQ
Sbjct: 48  LDLLLGIHRPIQG-------KIE-------VYQSIGFVPQ 73

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  L   +   ++  L+GPNGAGK+T ++ + G+T    G     G  +  + S T +  
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPL-EAWSATKLAL 73

Query: 497 SIGVCPQFNILWDALSGEE 515
                 Q      A     
Sbjct: 74  HRAYLSQQQTPPFATPVWH 92

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I  L + +                   ++  L + +   + F +LGP GAGKT  +  
Sbjct: 2   IEIESLSRKWKNF----------------SLDNLSLKVESGEYFVILGPTGAGKTLFLEL 45

Query: 467 LTGITPVTGGDALIYGFSI 485
           + G      G  L+ G  +
Sbjct: 46  IAGFHVPDSGRILLDGKDV 64

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + K F            Q T    A+  + +++   Q++ ++G +GAGK+T I C
Sbjct: 25  IKLSNITKVFH-----------QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 73

Query: 467 LTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQ-FNILW 508
           +  +   T G  L+ G  +   S   +T  ++ IG+  Q FN+L 
Sbjct: 74  VNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + +  L K+F                    +KG+ V+I + ++  ++GP+G+GK+T + C
Sbjct: 25  IDVHQLKKSF---------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRC 69

Query: 467 LTGITPVTGGDALIYGFSI-RSSVSMTNIQKSIG-VCPQFN 505
           L  +     G+ +I G ++     ++  +++ +G V  +FN
Sbjct: 70  LNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFN 110

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V + ++ + K F                   A+  + +NI   + F +LGP+GAGKTT +
Sbjct: 2   VRIIVKNVSKVFKK-------------GKVVALDNVNINIENGERFGILGPSGAGKTTFM 48

Query: 465 SCLTGITPVTGGDALI 480
             + G+   + G+   
Sbjct: 49  RIIAGLDVPSTGELYF 64

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VSMTN 493
           HA+KG+ +NI + ++  +LG NG GK+T      GI   + G  L     I  S   +  
Sbjct: 22  HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81

Query: 494 IQKSIGVCPQF 504
           +++SIG+  Q 
Sbjct: 82  LRESIGIVFQD 92

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG-----FSIRSSV 489
            A++ + + I + +   + G  G+GK+T +  + G+   T GD L  G     + IR ++
Sbjct: 21  KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80

Query: 490 SM 491
            +
Sbjct: 81  GI 82

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  +VK F                   A+  + + I   +   LLGP+G+GK+T +  
Sbjct: 4   IKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYT 48

Query: 467 LTGITPVTGGDALI 480
           + GI   T G    
Sbjct: 49  IAGIYKPTSGKIYF 62

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 44.1 bits (105), Expect = 8e-05
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  L K F                   A+  L + I   +   LLGP+G GKTTT+  
Sbjct: 12  VKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 56

Query: 467 LTGITPVTGGDALI 480
           + G+   T G    
Sbjct: 57  IAGLEEPTEGRIYF 70

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 8/120 (6%)

Query: 357 GNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTF 416
           G     G +          E I    +  +  EN+  +   E++              + 
Sbjct: 296 GVPSVYGVV---TLPASVREGINIFLDGHIPAENL--RFRTEALQFRIADATEDLQNDSA 350

Query: 417 PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
                     K Q       +       +  ++  ++G NG GKTT I  L G      G
Sbjct: 351 SRAFSYPSLKKTQGD---FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 24/79 (30%)

Query: 422 IGCCCKCQKTSPYHA--IKGLWVNIAKD---------------------QLFCLLGPNGA 458
           IGC   C K  P+ A  I  L  N+                        Q+  L+G NG 
Sbjct: 56  IGCGI-CVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGI 114

Query: 459 GKTTTISCLTGITPVTGGD 477
           GK+T +  L G      G 
Sbjct: 115 GKSTALKILAGKQKPNLGR 133

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
           L++EN+   + R          +   + +            +  K      ++     I 
Sbjct: 329 LKDENV---RFRPYEIRFTKLSERVDVERETLVEYP-----RLVKDYGSFKLEVEPGEIR 380

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           K ++  ++GPNG GKTT +  L G+   T G 
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  + K F                   A++ + + +   +   LLGP+G GKTTT+  
Sbjct: 4   VRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRM 48

Query: 467 LTGITPVTGGDALI 480
           + G+   + G   I
Sbjct: 49  IAGLEEPSRGQIYI 62

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 15/83 (18%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
              + +  L K +                 +  +KG+ +      +  ++G +G+GK+T 
Sbjct: 4   ENKLHVIDLHKRY---------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTF 48

Query: 464 ISCLTGITPVTGGDALIYGFSIR 486
           + C+  +   + G  ++ G +I 
Sbjct: 49  LRCINFLEKPSEGAIIVNGQNIN 71

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 10/131 (7%)

Query: 357 GNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIR-ESIPDPNVAVQIRGLVKT 415
           G     G + S   +     +        L  ENM   +IR + I      V    L K 
Sbjct: 212 GESSVYGRV-SKSYAARVGINNFLKGY--LPAENM---KIRPDEIKFMLKEVSDLDLSKD 265

Query: 416 FPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
                K     K  K      +        + ++  +LGPNG GKTT    L G      
Sbjct: 266 LKTKMKWT---KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE 322

Query: 476 GDALIYGFSIR 486
           G        + 
Sbjct: 323 GSVTPEKQILS 333

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 442 VNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG 482
           V+    +    LLGP GAGK+  +  + GI     G+  + G
Sbjct: 18  VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  L K F                   A+ G+   +   +   LLGP+G GKTTT+  
Sbjct: 4   IRVVNLKKYFGKV---------------KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLM 48

Query: 467 LTGITPVTGGDALI 480
           L GI   T G+   
Sbjct: 49  LAGIYKPTSGEIYF 62

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQK 496
           +  + ++I + ++  ++G +G+GK+T    +        G  LI G  +        +++
Sbjct: 25  LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA-LADPNWLRR 83

Query: 497 SIGVCPQFNIL 507
            +GV  Q N+L
Sbjct: 84  QVGVVLQDNVL 94

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
              E +    +    P+P     ++   K      K+         +    I  +    +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAI---VKVTNMEFQYPGTSKPQITDINFQCS 697

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
                 ++GPNGAGK+T I+ LTG    T G
Sbjct: 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	536
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.9
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.9
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.89
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.89
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.89
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.89
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.89
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.89
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.89
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.88
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.88
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.88
1g6h_A	257	High-affinity branched-chain amino acid transport	99.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.88
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.88
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.86
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.86
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.86
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.85
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.84
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.84
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.84
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.83
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.81
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.81
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.81
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.8
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.79
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.79
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.79
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.79
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.78
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.78
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.78
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.72
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.7
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.69
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.69
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.5
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.49
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.46
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.46
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.38
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.37
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.31
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.3
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.29
2og2_A	359	Putative signal recognition particle receptor; nuc	99.29
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.27
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.25
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.24
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.23
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.22
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.2
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.19
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.19
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.18
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.16
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.15
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.15
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.14
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.13
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.12
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.11
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.09
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.08
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.03
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.02
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.0
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.99
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.99
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.98
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.93
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.92
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.91
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.91
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.91
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.86
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.86
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.84
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.83
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.83
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.83
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.81
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.79
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.73
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.71
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.7
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.69
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.67
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.65
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.62
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.59
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.56
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.56
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.56
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.54
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.5
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.5
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.49
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.48
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.47
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.47
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.46
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.43
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.43
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.43
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.41
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.39
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.39
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.38
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.38
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.37
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.37
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.32
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.3
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.25
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.23
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.22
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.12
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.1
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.03
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.02
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.01
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.99
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.99
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.98
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.97
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.96
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.96
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.95
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.95
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.95
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.94
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.91
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.89
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.84
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.84
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.82
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.81
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.78
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.78
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.77
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.76
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.73
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.73
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.67
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.65
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.63
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.58
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.54
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.54
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.48
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.43
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.38
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.37
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.33
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.33
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.29
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.29
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.29
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.24
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.2
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.11
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.06
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.03
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.03
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.99
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.97
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.94
3ice_A	422	Transcription termination factor RHO; transcriptio	96.94
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.91
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.88
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.84
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.8
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.79
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.73
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.69
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.6
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.46
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.39
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.38
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.35
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.34
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.32
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.23
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.16
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.05
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.99
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.97
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.92
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.79
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.73
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.72
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.71
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.58
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.44
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.44
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.38
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.32
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.07
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.02
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.89
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.88
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	94.85
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	94.84
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.7
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.68
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.68
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.67
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.65
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	94.59
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.53
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.47
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.46
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.4
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.39
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.34
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.27
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.27
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.27
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.25
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.24
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.22
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.2
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.18
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	94.18
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.17
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.11
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.09
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.05
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.0
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.0
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	93.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.95
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.94
1via_A	175	Shikimate kinase; structural genomics, transferase	93.94
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.91
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.89
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.84
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.84
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.8
2z43_A	324	DNA repair and recombination protein RADA; archaea	93.77
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	93.76
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.64
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.57
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.57
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.56
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.56
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.51
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.49
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.48
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.47
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.46
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	93.44
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.44
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.35
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	93.34
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.33
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.31
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.3
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.29
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.28
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.27
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.23
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.22
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.21
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.21
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.2
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.17
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	93.13
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.11
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.1
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.01
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	92.99
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.98
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	92.98
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	92.93
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	92.93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.92
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	92.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.86
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	92.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.81
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.81
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.81
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	92.8
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	92.69
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	92.69
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	92.64
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.61
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	92.6
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.56
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.55
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	92.55
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	92.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.47
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.46
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	92.43
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	92.41
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	92.4
3bos_A	242	Putative DNA replication factor; P-loop containing	92.38
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.36
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.34
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	92.34
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	92.33
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.3
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.27
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.25
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.23
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.23
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.23
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.21
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	92.18
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	92.17
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	92.16
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.16
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	92.1
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	92.1
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	92.1
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.09
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.06
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	92.06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	92.03
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.92
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.91
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.91
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.91
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.88
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.74
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.74
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.73
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.73
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.72
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	91.71
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	91.7
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.69
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	91.62
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.61
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	91.59
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.58
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.58
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	91.57
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.53
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.51
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	91.49
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.43
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	91.43
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.35
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.35
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.33
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	91.3
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.3
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.22
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.13
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	91.12
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	91.05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.03
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	91.02
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.9
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	90.89
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	90.88
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.83
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	90.81
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	90.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	90.75
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.74
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	90.61
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	90.56
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.52
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	90.51
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.48
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.48
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	90.26
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	90.18
2hf9_A	226	Probable hydrogenase nickel incorporation protein	90.18
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	90.17
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	90.16
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.16
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.16
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	90.06
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	90.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.95
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	89.93
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	89.89
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.86
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	89.85
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.77
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	89.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	89.73
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	89.73
1u94_A	356	RECA protein, recombinase A; homologous recombinat	89.7
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	89.56
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	89.56
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	89.56
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	89.46
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	89.43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	89.42
1wxq_A	397	GTP-binding protein; structural genomics, riken st	89.35
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	89.31
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.29
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	89.2
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	89.16
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	88.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	88.66
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	88.42
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	88.4
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.32
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	88.25
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	88.17
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	88.16
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	88.03
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	88.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.79
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	87.6
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	87.57
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	87.46
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	87.43
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	87.07
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	87.03
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	86.99
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	86.87
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	86.82
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	86.77
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	86.63
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	86.61
3io5_A	333	Recombination and repair protein; storage dimer, i	86.6
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	86.5
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	86.37
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	86.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	85.93
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	85.78
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	85.64
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	85.61
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	85.32
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	85.25
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	85.01
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	84.96
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	84.96
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	84.87
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	84.8
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	84.6
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	84.57
3l0o_A	427	Transcription termination factor RHO; helicase, RH	84.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	84.48
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	84.17
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	83.92
2chg_A	226	Replication factor C small subunit; DNA-binding pr	83.89
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	83.73
3pvs_A	447	Replication-associated recombination protein A; ma	83.7
2qgz_A	308	Helicase loader, putative primosome component; str	83.43
1xp8_A	366	RECA protein, recombinase A; recombination, radior	83.22
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	83.22
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	83.22
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	83.15
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	83.14
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	83.04

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.91  E-value=3.2e-24  Score=220.70  Aligned_cols=120  Identities=21%  Similarity=0.362  Sum_probs=103.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ..+++++||+|.|++..           +.+.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus        22 ~~mi~v~~ls~~y~~~~-----------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~   90 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ   90 (366)
T ss_dssp             -CCEEEEEEEEEEECSS-----------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred             CceEEEEeEEEEeCCCC-----------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence            45799999999997531           1346999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcc--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          484 SIRSSV--SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       484 ~i~~~~--~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ++....  +..+.|+.+||+||++.+++.+||+||+.+...++|.++++.++.
T Consensus        91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~  143 (366)
T 3tui_C           91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR  143 (366)
T ss_dssp             ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence            986322  234567899999999999999999999999998888887665544

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.90  E-value=8.9e-24  Score=218.74  Aligned_cols=112  Identities=21%  Similarity=0.397  Sum_probs=99.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .||+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus         3 ~l~~~~l~~~yg~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~   67 (381)
T 3rlf_A            3 SVQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM   67 (381)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence            48999999999642               699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ...   ...++.+||+||+..||++|||+||+.+..+.+|.+++++++.+
T Consensus        68 ~~~---~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v  114 (381)
T 3rlf_A           68 NDT---PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV  114 (381)
T ss_dssp             TTC---CGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHH
T ss_pred             CCC---CHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence            532   23357899999999999999999999999999998877655443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.90  E-value=1.7e-23  Score=206.67  Aligned_cols=110  Identities=25%  Similarity=0.399  Sum_probs=97.4

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++||+|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus        13 ~~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~   77 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK   77 (256)
T ss_dssp             -CCEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             CCeEEEEEEEEEECCE---------------EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence            3579999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      ++..  ...+.++.+||+||++.+++.+||+||+.++...++.+.++
T Consensus        78 ~~~~--~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~  122 (256)
T 1vpl_A           78 NVVE--EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE  122 (256)
T ss_dssp             ETTT--CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHH
T ss_pred             ECCc--cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHH
Confidence            9853  34556788999999999999999999999988777776543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.89  E-value=6.7e-24  Score=218.17  Aligned_cols=114  Identities=20%  Similarity=0.327  Sum_probs=98.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus         4 ~l~i~~ls~~y~~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i   68 (359)
T 3fvq_A            4 ALHIGHLSKSFQNT---------------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI   68 (359)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            58999999999642               699999999999999999999999999999999999999999999999998


Q ss_pred             CCc-ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          486 RSS-VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       486 ~~~-~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      ... ......++++||+||+..+|+++||+||+.+..+.++.++++.++.
T Consensus        69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~  118 (359)
T 3fvq_A           69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR  118 (359)
T ss_dssp             ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH
T ss_pred             cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH
Confidence            321 2233456789999999999999999999999877777766554433

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.89  E-value=3.1e-23  Score=205.53  Aligned_cols=110  Identities=21%  Similarity=0.487  Sum_probs=95.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus        24 ~l~i~~l~~~y~~~---------------~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i   88 (263)
T 2olj_A           24 MIDVHQLKKSFGSL---------------EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINL   88 (263)
T ss_dssp             SEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEES
T ss_pred             eEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence            69999999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             C-CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCChHh
Q 009374          486 R-SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPLDS  530 (536)
Q Consensus       486 ~-~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~~~  530 (536)
                      . +..+....++.+||+||++.+++.+||+||+.+.. +.++.+.++
T Consensus        89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~  135 (263)
T 2olj_A           89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREK  135 (263)
T ss_dssp             SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHH
T ss_pred             CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHH
Confidence            4 11234456778999999999999999999999865 666766543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.89  E-value=3.5e-23  Score=200.62  Aligned_cols=110  Identities=20%  Similarity=0.362  Sum_probs=95.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         4 ~l~~~~l~~~y~~~---------------~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   68 (224)
T 2pcj_A            4 ILRAENIKKVIRGY---------------EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV   68 (224)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEEEeEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            68999999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCccc--HHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHh
Q 009374          486 RSSVS--MTNIQ-KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDS  530 (536)
Q Consensus       486 ~~~~~--~~~~~-~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~  530 (536)
                      .....  ....+ +.+||+||++.+++.+||+||+.+....++.+.++
T Consensus        69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~  116 (224)
T 2pcj_A           69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE  116 (224)
T ss_dssp             CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHH
Confidence            53221  12333 67999999999999999999999987777766443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.89  E-value=2.9e-23  Score=213.45  Aligned_cols=112  Identities=23%  Similarity=0.464  Sum_probs=98.7

Q ss_pred             CceEEEeeeEEEc-CCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          404 NVAVQIRGLVKTF-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       404 ~~~i~~~~l~k~y-~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      ...++++||+|.| ++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus        12 ~~~l~~~~l~~~y~g~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g   76 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGA---------------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG   76 (355)
T ss_dssp             CEEEEEEEEEECCTTST---------------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred             CceEEEEEEEEEEcCCC---------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence            4579999999999 432               599999999999999999999999999999999999999999999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      .++..   ....++.+||+||+..+|+.+||+||+.+..+.++.++++.++
T Consensus        77 ~~i~~---~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~  124 (355)
T 1z47_A           77 KRVTD---LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA  124 (355)
T ss_dssp             EECTT---CCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             EECCc---CChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            99853   2234678999999999999999999999988888887655443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.89  E-value=5.5e-23  Score=204.97  Aligned_cols=116  Identities=25%  Similarity=0.317  Sum_probs=98.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||+|.|++.              ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         6 ~~l~i~~ls~~y~~~--------------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~   71 (275)
T 3gfo_A            6 YILKVEELNYNYSDG--------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP   71 (275)
T ss_dssp             EEEEEEEEEEECTTS--------------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             cEEEEEEEEEEECCC--------------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence            479999999999653              149999999999999999999999999999999999999999999999999


Q ss_pred             cCC-cccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRS-SVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~-~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      +.. ..+..+.|+.+||+||++ ..+..+||+||+.+.....|.+.++.++.
T Consensus        72 i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~  123 (275)
T 3gfo_A           72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR  123 (275)
T ss_dssp             CCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH
Confidence            842 123445778999999985 23347999999999988888877655443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.89  E-value=5.2e-23  Score=204.06  Aligned_cols=110  Identities=18%  Similarity=0.379  Sum_probs=94.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         6 ~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~   70 (262)
T 1b0u_A            6 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI   70 (262)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence            69999999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CC----------c--ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-HhcCCChHh
Q 009374          486 RS----------S--VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA-NIKGLPLDS  530 (536)
Q Consensus       486 ~~----------~--~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~-~lkg~~~~~  530 (536)
                      ..          .  .+....|+.+||+||++.+++.+||+||+.+.. ..++.+.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~  128 (262)
T 1b0u_A           71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD  128 (262)
T ss_dssp             CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHH
T ss_pred             cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHH
Confidence            41          0  112345778999999999999999999999864 566766543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.89  E-value=5.7e-23  Score=212.03  Aligned_cols=110  Identities=20%  Similarity=0.381  Sum_probs=97.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i   67 (362)
T 2it1_A            3 EIKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV   67 (362)
T ss_dssp             CEEEEEEEEESSSS---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            48999999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ...   ...++++||+||+..+|++|||+||+.+..+.++.++++.++
T Consensus        68 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  112 (362)
T 2it1_A           68 TEL---PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK  112 (362)
T ss_dssp             TTS---CGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CcC---CHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            532   223578999999999999999999999988888887665443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.89  E-value=7.5e-23  Score=199.70  Aligned_cols=113  Identities=23%  Similarity=0.323  Sum_probs=93.7

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++||+|.|++..           +...+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   70 (235)
T 3tif_A            2 VKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN   70 (235)
T ss_dssp             EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence            78999999996431           1236999999999999999999999999999999999999999999999999985


Q ss_pred             CcccH--HHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhc---CCChHh
Q 009374          487 SSVSM--TNI-QKSIGVCPQFNILWDALSGEEHLHLFANIK---GLPLDS  530 (536)
Q Consensus       487 ~~~~~--~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk---g~~~~~  530 (536)
                      .....  .+. ++.+||+||++.+++.+||+||+.+....+   +.+.++
T Consensus        71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~  120 (235)
T 3tif_A           71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE  120 (235)
T ss_dssp             TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHH
T ss_pred             cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHH
Confidence            32221  122 456999999999999999999999977654   444444

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.88  E-value=6.4e-23  Score=212.71  Aligned_cols=113  Identities=19%  Similarity=0.353  Sum_probs=97.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~   67 (372)
T 1g29_1            3 GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV   67 (372)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEEC
Confidence            48999999999642               599999999999999999999999999999999999999999999999987


Q ss_pred             CCcc---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSV---SMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~---~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ....   .....++++||+||+..+|+++||+||+.+..+.++.++++.++
T Consensus        68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  118 (372)
T 1g29_1           68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ  118 (372)
T ss_dssp             EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            3200   02233678999999999999999999999998888887665443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.88  E-value=3.1e-23  Score=213.73  Aligned_cols=108  Identities=23%  Similarity=0.385  Sum_probs=94.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i   67 (359)
T 2yyz_A            3 SIRVVNLKKYFGKV---------------KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLV   67 (359)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             EEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEEC
Confidence            48999999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSI  531 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~  531 (536)
                      ...   ...++++||+||+..+|+++||+||+.+..+.++.++++.
T Consensus        68 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~  110 (359)
T 2yyz_A           68 NDI---PPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEV  110 (359)
T ss_dssp             TTS---CGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHT
T ss_pred             CCC---ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence            532   2235789999999999999999999999877777665443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.88  E-value=9.2e-23  Score=199.76  Aligned_cols=102  Identities=27%  Similarity=0.456  Sum_probs=89.5

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +.++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD   69 (240)
T ss_dssp             EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             ceEEEEeEEEEECCe---------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence            469999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +......+..++.+||+||++.+++.+||+||+.+..
T Consensus        70 ~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~  106 (240)
T 1ji0_A           70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA  106 (240)
T ss_dssp             CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred             CCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence            8532222223566999999999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.88  E-value=5.2e-23  Score=203.60  Aligned_cols=104  Identities=21%  Similarity=0.256  Sum_probs=91.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus         6 ~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~   70 (257)
T 1g6h_A            6 EILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD   70 (257)
T ss_dssp             EEEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             cEEEEeeeEEEECCE---------------eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence            469999999999642               59999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      +......+..++.+||+||++.+++.+||+||+.+....
T Consensus        71 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~  109 (257)
T 1g6h_A           71 ITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC  109 (257)
T ss_dssp             CTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS
T ss_pred             CCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhh
Confidence            853222334567899999999999999999999886543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.88  E-value=5.9e-23  Score=212.62  Aligned_cols=110  Identities=26%  Similarity=0.421  Sum_probs=88.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++.               .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus        11 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i   75 (372)
T 1v43_A           11 EVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV   75 (372)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCE---------------EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence            48999999999642               599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ...   ...++++||+||+..+|++|||+||+.+..+.++.++++.++
T Consensus        76 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  120 (372)
T 1v43_A           76 TYL---PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK  120 (372)
T ss_dssp             TTS---CGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHH
T ss_pred             CCC---ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence            532   223578999999999999999999999977667777655443

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.88  E-value=4.8e-23  Score=212.30  Aligned_cols=113  Identities=22%  Similarity=0.363  Sum_probs=96.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcc--eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYH--AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~--al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .++++||+|.|++.               .  +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus         3 ~l~i~~l~~~y~~~---------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~   67 (353)
T 1oxx_K            3 RIIVKNVSKVFKKG---------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR   67 (353)
T ss_dssp             CEEEEEEEEEEGGG---------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred             EEEEEeEEEEECCE---------------eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence            48999999999542               5  999999999999999999999999999999999999999999999999


Q ss_pred             ecCCc--ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          484 SIRSS--VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       484 ~i~~~--~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      ++...  ......++++||+||+..+|+++||+||+.+..+.++.++++.++
T Consensus        68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~  119 (353)
T 1oxx_K           68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK  119 (353)
T ss_dssp             EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH
T ss_pred             ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            87320  002345678999999999999999999999987777777655443

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.86  E-value=4.8e-22  Score=197.44  Aligned_cols=105  Identities=22%  Similarity=0.293  Sum_probs=93.2

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++.               .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+
T Consensus         9 ~~~l~~~~l~~~~~~~---------------~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~   73 (266)
T 4g1u_C            9 VALLEASHLHYHVQQQ---------------ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ   73 (266)
T ss_dssp             CCEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTE
T ss_pred             cceEEEEeEEEEeCCe---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence            3479999999999653               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      ++.. ...++.++.+||+||++.+++.+||+||+.+.....
T Consensus        74 ~~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~  113 (266)
T 4g1u_C           74 NLNS-WQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY  113 (266)
T ss_dssp             ETTT-SCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred             ECCc-CCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence            9863 334556778999999999989999999999875543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.86  E-value=3.8e-22  Score=204.93  Aligned_cols=103  Identities=20%  Similarity=0.402  Sum_probs=92.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++               + +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~l~~~y~~---------------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~   65 (348)
T 3d31_A            2 IEIESLSRKWKN---------------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT   65 (348)
T ss_dssp             EEEEEEEEECSS---------------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEECC---------------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            789999999942               3 899999999999999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      .   ....++++||+||+..+|++|||+||+.+..+.++.++
T Consensus        66 ~---~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~  104 (348)
T 3d31_A           66 D---LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (348)
T ss_dssp             T---SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             C---CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence            3   22346789999999999999999999999877766554

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.86  E-value=5.8e-22  Score=190.41  Aligned_cols=100  Identities=24%  Similarity=0.358  Sum_probs=90.6

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++|++|.|++                .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus         8 ~~~l~~~~ls~~y~~----------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~   71 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV   71 (214)
T ss_dssp             -CEEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             CceEEEEEEEEEeCC----------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence            457999999999953                4999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ++.      ..++.+||+||++.+++.+||+||+.++...++
T Consensus        72 ~~~------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~  107 (214)
T 1sgw_A           72 PIT------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG  107 (214)
T ss_dssp             EGG------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred             Ehh------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence            873      257789999999999999999999999876655

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.85  E-value=2.6e-21  Score=190.21  Aligned_cols=100  Identities=18%  Similarity=0.292  Sum_probs=87.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|.|++..             ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         7 ~~~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~   73 (247)
T 2ff7_A            7 DITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL   73 (247)
T ss_dssp             EEEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             ceeEEEEEEEeCCCC-------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence            589999999994210             1599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+..+.|+.+||+||++.+++ +||+||+.+.
T Consensus        74 ~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~  106 (247)
T 2ff7_A           74 AL-ADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA  106 (247)
T ss_dssp             TT-SCHHHHHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred             hh-CCHHHHHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence            53 234556788999999999986 6999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.84  E-value=3.5e-21  Score=191.35  Aligned_cols=103  Identities=18%  Similarity=0.294  Sum_probs=87.1

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +++++||+|.|+...          ...+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   71 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK   71 (266)
T ss_dssp             CEEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            478999999996210          0002599999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~~~~  522 (536)
                      ..   . ..++.+||+||++ .++..+||+||+.+...
T Consensus        72 ~~---~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~  105 (266)
T 2yz2_A           72 KG---Y-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVK  105 (266)
T ss_dssp             CH---H-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred             ch---H-HhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence            42   2 5678899999995 56678999999998654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.84  E-value=7.1e-21  Score=189.21  Aligned_cols=102  Identities=22%  Similarity=0.324  Sum_probs=87.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcC
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYG  482 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g  482 (536)
                      ..++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+  .+|++|+|.++|
T Consensus        19 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g   83 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDK---------------AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG   83 (267)
T ss_dssp             -CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred             ceEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence            469999999999542               599999999999999999999999999999999999  579999999999


Q ss_pred             EecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .++.........++.+||+||++.+++.+|++|++.+..
T Consensus        84 ~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~  122 (267)
T 2zu0_C           84 KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL  122 (267)
T ss_dssp             EEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHH
T ss_pred             EECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHH
Confidence            998432212222456999999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.84  E-value=6.1e-21  Score=187.92  Aligned_cols=101  Identities=27%  Similarity=0.371  Sum_probs=87.4

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--cccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--~~pt~G~i~i~g~  483 (536)
                      +++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+  ++|++|+|.++|.
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~   67 (250)
T 2d2e_A            3 QLEIRDLWASIDGE---------------TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE   67 (250)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTE
T ss_pred             eEEEEeEEEEECCE---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE
Confidence            58999999999642               599999999999999999999999999999999998  8999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      ++......+..++.+||+||++.+++.+||+||+.+..
T Consensus        68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~  105 (250)
T 2d2e_A           68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL  105 (250)
T ss_dssp             ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHH
T ss_pred             ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHH
Confidence            98532222223556999999999999999999998865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.84  E-value=1.8e-21  Score=190.98  Aligned_cols=98  Identities=21%  Similarity=0.317  Sum_probs=85.8

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|+++.|++.              ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~~--------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (243)
T 1mv5_A            2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID   67 (243)
T ss_dssp             EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred             EEEEEEEEEeCCC--------------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence            7899999999422              15999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+....|+.+||+||++.+++ .||+||+.+.
T Consensus        68 ~-~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~   99 (243)
T 1mv5_A           68 N-ISLENWRSQIGFVSQDSAIMA-GTIRENLTYG   99 (243)
T ss_dssp             T-TSCSCCTTTCCEECCSSCCCC-EEHHHHTTSC
T ss_pred             h-CCHHHHHhhEEEEcCCCcccc-ccHHHHHhhh
Confidence            3 222345778999999999987 5999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.84  E-value=5.9e-21  Score=192.84  Aligned_cols=101  Identities=21%  Similarity=0.362  Sum_probs=90.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||++.|++.              ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        52 ~~i~~~~vs~~y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~  117 (306)
T 3nh6_A           52 GRIEFENVHFSYADG--------------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD  117 (306)
T ss_dssp             CCEEEEEEEEESSTT--------------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             CeEEEEEEEEEcCCC--------------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEE
Confidence            359999999999643              159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +.. .+...+|+.+||+||++.+|+ .||+|||.+..
T Consensus       118 i~~-~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~  152 (306)
T 3nh6_A          118 ISQ-VTQASLRSHIGVVPQDTVLFN-DTIADNIRYGR  152 (306)
T ss_dssp             TTS-BCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTS
T ss_pred             ccc-CCHHHHhcceEEEecCCccCc-ccHHHHHHhhc
Confidence            964 456678899999999999995 59999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.83  E-value=3.1e-21  Score=192.82  Aligned_cols=101  Identities=23%  Similarity=0.286  Sum_probs=86.8

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...++++||+|.|++.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus        19 ~~~l~~~~l~~~y~~~---------------~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~   83 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQGK---------------TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK   83 (279)
T ss_dssp             CEEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB
T ss_pred             CceEEEEeEEEEECCE---------------EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE
Confidence            3469999999999642               5999999999999999999999999999999999999999999999999


Q ss_pred             ecC--CcccHHHhhcceEEEcCCCCC--CCCCCHHHHHHHH
Q 009374          484 SIR--SSVSMTNIQKSIGVCPQFNIL--WDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~--~~~~~~~~~~~ig~~pQ~~~l--~~~lTv~e~L~~~  520 (536)
                      ++.  . .+..+.++.+||+||++.+  .+.+||+||+.+.
T Consensus        84 ~~~~~~-~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~  123 (279)
T 2ihy_A           84 MPGKVG-YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG  123 (279)
T ss_dssp             CCC----CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred             Eccccc-CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence            874  2 2345567889999998754  3457999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.83  E-value=9.2e-21  Score=188.76  Aligned_cols=103  Identities=21%  Similarity=0.340  Sum_probs=89.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||++.|++..            ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus        15 ~~l~~~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~   82 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHP------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP   82 (271)
T ss_dssp             CCEEEEEEEECCTTCT------------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             ceEEEEEEEEEeCCCC------------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            3699999999996410            1259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      +.. .+....++.+||+||++.+++ .||+||+.+..
T Consensus        83 i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~  117 (271)
T 2ixe_A           83 LVQ-YDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGL  117 (271)
T ss_dssp             GGG-BCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred             ccc-CCHHHHhccEEEEecCCcccc-ccHHHHHhhhc
Confidence            842 234456778999999999987 59999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.83  E-value=1.7e-21  Score=190.51  Aligned_cols=98  Identities=21%  Similarity=0.268  Sum_probs=86.6

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++                 +++|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~-----------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   63 (240)
T 2onk_A            2 FLKVRAEKRLGN-----------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT   63 (240)
T ss_dssp             CEEEEEEEEETT-----------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCC-----------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            678999999942                 59999999999 999999999999999999999999999999999999984


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      .   ....++.+||+||++.+++.+||+||+.+....++
T Consensus        64 ~---~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~   99 (240)
T 2onk_A           64 P---LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE   99 (240)
T ss_dssp             T---SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred             c---CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence            3   22346789999999999999999999988654444

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.81  E-value=3.6e-20  Score=182.11  Aligned_cols=94  Identities=22%  Similarity=0.272  Sum_probs=84.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++|.                   .+++|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++
T Consensus         4 ~l~~~~l~~~-------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~   63 (249)
T 2qi9_C            4 VMQLQDVAES-------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPL   63 (249)
T ss_dssp             EEEEEEEEET-------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEG
T ss_pred             EEEEEceEEE-------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEEC
Confidence            5889999875                   1899999999999999999999999999999999999999 9999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+..+.++.+||+||+..+++.+||+||+.+.
T Consensus        64 ~~-~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~   97 (249)
T 2qi9_C           64 EA-WSATKLALHRAYLSQQQTPPFATPVWHYLTLH   97 (249)
T ss_dssp             GG-SCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred             Cc-CCHHHHhceEEEECCCCccCCCCcHHHHHHHh
Confidence            42 23455677899999999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.81  E-value=3.1e-20  Score=183.92  Aligned_cols=107  Identities=22%  Similarity=0.427  Sum_probs=88.4

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++|++|.|++..           ..+.+++|+||+++ ||+++|+||||||||||+++|+|+. |++|+|.++|.++.
T Consensus         2 l~~~~l~~~y~~~~-----------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~   68 (263)
T 2pjz_A            2 IQLKNVGITLSGKG-----------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR   68 (263)
T ss_dssp             EEEEEEEEEEEEET-----------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGG
T ss_pred             EEEEEEEEEeCCCC-----------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECc
Confidence            78999999996410           01259999999999 9999999999999999999999999 99999999999984


Q ss_pred             CcccHHHhhcceE-EEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374          487 SSVSMTNIQKSIG-VCPQFNILWDALSGEEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       487 ~~~~~~~~~~~ig-~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~  532 (536)
                      .  . .. ++.+| |+||++.+  .+|++||+.++..+.+...++++
T Consensus        69 ~--~-~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~  109 (263)
T 2pjz_A           69 K--I-RN-YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFL  109 (263)
T ss_dssp             G--C-SC-CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHH
T ss_pred             c--h-HH-hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHH
Confidence            2  1 23 67899 99999887  89999999998765544333333

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.81  E-value=3e-20  Score=193.49  Aligned_cols=100  Identities=23%  Similarity=0.341  Sum_probs=87.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||+|.|++.             ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|++
T Consensus        18 ~~i~~~~l~~~y~~~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~   83 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEG-------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVS   83 (390)
T ss_dssp             CCEEEEEEEEESSSS-------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCB
T ss_pred             CeEEEEEEEEEecCC-------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEE
Confidence            469999999999532             1269999999999999999999999999999999999998 99999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.. ....+.|+.+||+||+..+|+ +||+||+.++
T Consensus        84 i~~-~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~  117 (390)
T 3gd7_A           84 WDS-ITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPN  117 (390)
T ss_dssp             TTS-SCHHHHHHTEEEESCCCCCCS-EEHHHHHCTT
T ss_pred             CCc-CChHHHhCCEEEEcCCcccCc-cCHHHHhhhc
Confidence            863 345567889999999999997 6999999743

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.81  E-value=6.4e-20  Score=181.59  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=87.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++||++.|++..            .+.+++|+||++++||+++|+||||||||||+++|+|+++| +|+|.++|.+
T Consensus        16 ~~l~i~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~   82 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT------------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKN   82 (260)
T ss_dssp             CCEEEEEEEECCTTCC------------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEE
T ss_pred             CeEEEEEEEEEeCCCC------------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEE
Confidence            3599999999996521            12599999999999999999999999999999999999987 8999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.. .+....|+.+||+||++.+++ .||+||+.+.
T Consensus        83 i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~  116 (260)
T 2ghi_A           83 VNK-YNRNSIRSIIGIVPQDTILFN-ETIKYNILYG  116 (260)
T ss_dssp             GGG-BCHHHHHTTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred             hhh-cCHHHHhccEEEEcCCCcccc-cCHHHHHhcc
Confidence            842 234567888999999999986 5999999874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.80  E-value=1.3e-19  Score=178.61  Aligned_cols=87  Identities=26%  Similarity=0.329  Sum_probs=79.9

Q ss_pred             eEEEeeeEEEcC-CCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          406 AVQIRGLVKTFP-GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       406 ~i~~~~l~k~y~-~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .++++|+++.|+ +.               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.     
T Consensus         4 ~l~i~~l~~~y~~~~---------------~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-----   63 (253)
T 2nq2_C            4 ALSVENLGFYYQAEN---------------FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-----   63 (253)
T ss_dssp             EEEEEEEEEEETTTT---------------EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-----
T ss_pred             eEEEeeEEEEeCCCC---------------eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-----
Confidence            589999999996 32               599999999999999999999999999999999999999999998     


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                               .++.+||+||++.+++.+||+||+.+..
T Consensus        64 ---------~~~~i~~v~q~~~~~~~~tv~enl~~~~   91 (253)
T 2nq2_C           64 ---------VYQSIGFVPQFFSSPFAYSVLDIVLMGR   91 (253)
T ss_dssp             ---------ECSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred             ---------EeccEEEEcCCCccCCCCCHHHHHHHhh
Confidence                     1456999999999999999999998864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.79  E-value=2.3e-19  Score=174.34  Aligned_cols=88  Identities=22%  Similarity=0.343  Sum_probs=79.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++|.|++.             ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|  
T Consensus         5 ~~l~~~~l~~~y~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--   69 (229)
T 2pze_A            5 TEVVMENVTAFWEEG-------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--   69 (229)
T ss_dssp             EEEEEEEEEECSSTT-------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--
T ss_pred             ceEEEEEEEEEeCCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--
Confidence            468999999999632             12599999999999999999999999999999999999999999999987  


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                  .+||+||++.+++. ||+||+.+.
T Consensus        70 ------------~i~~v~q~~~~~~~-tv~enl~~~   92 (229)
T 2pze_A           70 ------------RISFCSQFSWIMPG-TIKENIIFG   92 (229)
T ss_dssp             ------------CEEEECSSCCCCSB-CHHHHHHTT
T ss_pred             ------------EEEEEecCCcccCC-CHHHHhhcc
Confidence                        38999999999886 999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.79  E-value=2.4e-19  Score=197.37  Aligned_cols=113  Identities=19%  Similarity=0.383  Sum_probs=95.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~  406 (582)
T 3b60_A          340 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD  406 (582)
T ss_dssp             CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred             CcEEEEEEEEEcCCCC-------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence            3699999999996421             159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      +.+ .+.++.|+++||+||++.+++. |++||+.+... .+.+.+++++
T Consensus       407 ~~~-~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~  452 (582)
T 3b60_A          407 LRE-YTLASLRNQVALVSQNVHLFND-TVANNIAYART-EEYSREQIEE  452 (582)
T ss_dssp             TTT-BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHH
T ss_pred             ccc-cCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-CCCCHHHHHH
Confidence            963 3456778899999999999985 99999987531 2344444443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.79  E-value=2.4e-19  Score=197.09  Aligned_cols=101  Identities=25%  Similarity=0.380  Sum_probs=90.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|++++|++..             ..+++|+||++++||++||+|||||||||++++|+|+++|++|+|.++|.|
T Consensus       338 ~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~  404 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN  404 (578)
T ss_dssp             CCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred             CeEEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence            4699999999997531             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ++. .+.++.|+++|||||++.+|+. |++||+.+.
T Consensus       405 ~~~-~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~  438 (578)
T 4a82_A          405 IKD-FLTGSLRNQIGLVQQDNILFSD-TVKENILLG  438 (578)
T ss_dssp             GGG-SCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred             hhh-CCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence            963 3566788999999999999987 999999774

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.79  E-value=2.2e-19  Score=197.68  Aligned_cols=113  Identities=19%  Similarity=0.338  Sum_probs=94.8

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.+
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~  406 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKE-------------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD  406 (582)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            4699999999996421             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      +.+ .+.++.|+++||+||++.+|+. |++||+.+... .+.+.+++++
T Consensus       407 ~~~-~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~  452 (582)
T 3b5x_A          407 VRD-YKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQ  452 (582)
T ss_pred             hhh-CCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHH
Confidence            853 3456788899999999999975 99999988531 2334444443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.78  E-value=2e-19  Score=175.65  Aligned_cols=88  Identities=22%  Similarity=0.325  Sum_probs=78.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|+++.|++..             ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|   
T Consensus         3 ~l~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---   66 (237)
T 2cbz_A            3 SITVRNATFTWARSD-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---   66 (237)
T ss_dssp             CEEEEEEEEESCTTS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---
T ss_pred             eEEEEEEEEEeCCCC-------------CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---
Confidence            489999999996321             1599999999999999999999999999999999999999999999988   


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                                 .+||+||++.+ +.+|++||+.+..
T Consensus        67 -----------~i~~v~Q~~~~-~~~tv~enl~~~~   90 (237)
T 2cbz_A           67 -----------SVAYVPQQAWI-QNDSLRENILFGC   90 (237)
T ss_dssp             -----------CEEEECSSCCC-CSEEHHHHHHTTS
T ss_pred             -----------EEEEEcCCCcC-CCcCHHHHhhCcc
Confidence                       38999999875 5889999998753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.78  E-value=3.3e-19  Score=196.68  Aligned_cols=100  Identities=26%  Similarity=0.425  Sum_probs=90.1

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++.              ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus       353 ~~i~~~~v~~~y~~~--------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~  418 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKK--------------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID  418 (598)
T ss_dssp             CCEEEEEEECCSSSS--------------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             CeEEEEEEEEECCCC--------------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence            369999999999643              159999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.+ .+.++.|+++||+||++.+|+. |++||+.+.
T Consensus       419 i~~-~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~  452 (598)
T 3qf4_B          419 IRK-IKRSSLRSSIGIVLQDTILFST-TVKENLKYG  452 (598)
T ss_dssp             GGG-SCHHHHHHHEEEECTTCCCCSS-BHHHHHHSS
T ss_pred             hhh-CCHHHHHhceEEEeCCCccccc-cHHHHHhcC
Confidence            963 4567788999999999999965 999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.77  E-value=3.9e-19  Score=195.68  Aligned_cols=101  Identities=18%  Similarity=0.327  Sum_probs=90.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|+|.++|.|
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~  406 (587)
T 3qf4_A          340 GSVSFENVEFRYFENT-------------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD  406 (587)
T ss_dssp             CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred             CcEEEEEEEEEcCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence            4699999999996531             259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +++ .+.++.|+++||+||++.+|+. |++||+.+.
T Consensus       407 i~~-~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~  440 (587)
T 3qf4_A          407 VRT-VKLKDLRGHISAVPQETVLFSG-TIKENLKWG  440 (587)
T ss_dssp             GGG-BCHHHHHHHEEEECSSCCCCSE-EHHHHHTTT
T ss_pred             ccc-CCHHHHHhheEEECCCCcCcCc-cHHHHHhcc
Confidence            863 4566788999999999999976 999999764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.73  E-value=3e-18  Score=204.06  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=98.7

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++||+.+|+++.            +.++|+|+||+|++||.+||+|+|||||||++++|.|+++|++|+|.|||.|
T Consensus      1075 g~I~f~nVsf~Y~~~~------------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~d 1142 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPERP------------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSE 1142 (1321)
T ss_dssp             CCEEEEEEEECCTTSC------------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEE
T ss_pred             CeEEEEEEEEeCCCCC------------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEE
Confidence            3699999999997542            2369999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      +++ -+.+.+|+++|++||++.||+. |+||||.+...-...+.+++.+.
T Consensus      1143 i~~-i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~A 1190 (1321)
T 4f4c_A         1143 IKT-LNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEA 1190 (1321)
T ss_dssp             TTT-BCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHH
T ss_pred             hhh-CCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHH
Confidence            974 5788999999999999999987 99999976422233455555443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.72  E-value=1.9e-17  Score=196.82  Aligned_cols=103  Identities=22%  Similarity=0.397  Sum_probs=92.3

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|+++.            +.++|+|+||++++||++||+|||||||||++++|.|+++|++|+|.++|.|
T Consensus       386 g~i~~~~v~~~y~~~~------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~  453 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRK------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD  453 (1284)
T ss_dssp             CCEEEEEEEECCSSTT------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEE
T ss_pred             CeEEEEEEEEEcCCCC------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence            3599999999997531            2369999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      ++. .+.+.+|+++|||||++.|++. |++||+.+..
T Consensus       454 i~~-~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~  488 (1284)
T 3g5u_A          454 IRT-INVRYLREIIGVVSQEPVLFAT-TIAENIRYGR  488 (1284)
T ss_dssp             GGG-SCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHC
T ss_pred             HHh-CCHHHHHhheEEEcCCCccCCc-cHHHHHhcCC
Confidence            963 4567788999999999999987 9999998863

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.70  E-value=1.6e-17  Score=166.66  Aligned_cols=82  Identities=22%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.+  .               .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|  
T Consensus        39 ~~l~~~~l~~~~--~---------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--   99 (290)
T 2bbs_A           39 DSLSFSNFSLLG--T---------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--   99 (290)
T ss_dssp             -----------C--C---------------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--
T ss_pred             ceEEEEEEEEcC--c---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--
Confidence            358999998853  1               499999999999999999999999999999999999999999999987  


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH  518 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~  518 (536)
                                  .+||+||++.+++. |++||+.
T Consensus       100 ------------~i~~v~Q~~~l~~~-tv~enl~  120 (290)
T 2bbs_A          100 ------------RISFCSQNSWIMPG-TIKENII  120 (290)
T ss_dssp             ------------CEEEECSSCCCCSS-BHHHHHH
T ss_pred             ------------EEEEEeCCCccCcc-cHHHHhh
Confidence                        38999999999885 9999997

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.69  E-value=3.8e-17  Score=194.62  Aligned_cols=114  Identities=23%  Similarity=0.396  Sum_probs=97.9

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++|+++.|++..            ++++|+|+||++++||.++|+||+||||||++++|.|+++|++|+|.++|.|
T Consensus       414 g~I~~~nvsF~Y~~~~------------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~  481 (1321)
T 4f4c_A          414 GDITVENVHFTYPSRP------------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD  481 (1321)
T ss_dssp             CCEEEEEEEECCSSST------------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             CcEEEEEeeeeCCCCC------------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCcc
Confidence            3699999999997642            2369999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~  534 (536)
                      +++ -+.+.+|+++|||||++.||+. |++||+.+..  ...+.+++.+.
T Consensus       482 i~~-~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~--~~~~~~~v~~a  527 (1321)
T 4f4c_A          482 VRD-INLEFLRKNVAVVSQEPALFNC-TIEENISLGK--EGITREEMVAA  527 (1321)
T ss_dssp             TTT-SCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC--TTCCHHHHHHH
T ss_pred             chh-ccHHHHhhcccccCCcceeeCC-chhHHHhhhc--ccchHHHHHHH
Confidence            974 5678899999999999999976 9999998752  12345555443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.69  E-value=1.8e-17  Score=197.07  Aligned_cols=114  Identities=25%  Similarity=0.408  Sum_probs=96.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|+++.            +..+|+|+||+|++||++||+|+|||||||++++|.|+++|++|+|.++|.|
T Consensus      1029 g~i~~~~v~~~y~~~~------------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRP------------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096 (1284)
T ss_dssp             CCEEEEEEEBCCSCGG------------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSC
T ss_pred             CcEEEEEEEEECCCCC------------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEE
Confidence            3599999999997531            1259999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHh
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~  532 (536)
                      ++. .+.+..|+++||+||++.+++ .|++||+.+....++.+.+++.
T Consensus      1097 i~~-~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~ 1142 (1284)
T 3g5u_A         1097 IKQ-LNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIV 1142 (1284)
T ss_dssp             TTS-SCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHH
T ss_pred             ccc-CCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHH
Confidence            963 456788999999999999885 5999999875433334444443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.58  E-value=7.7e-18  Score=153.99  Aligned_cols=78  Identities=24%  Similarity=0.194  Sum_probs=67.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .+++++||++++||+++|+||||||||||+++|+|++ |++|+|.++|.++..  . .+.+   ++++|+..++ .+|+.
T Consensus        21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~--~-~~~~---~~~~q~~~l~-~ltv~   92 (158)
T 1htw_A           21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVE--E-YNIA---GKMIYHFDLY-RLADP   92 (158)
T ss_dssp             HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEE--E-EEET---TEEEEEEECT-TCSCT
T ss_pred             HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeee--e-ccCC---Ccceeccccc-cCCcH
Confidence            6999999999999999999999999999999999999 999999999988731  1 1112   2799999898 99999


Q ss_pred             HHHHHH
Q 009374          515 EHLHLF  520 (536)
Q Consensus       515 e~L~~~  520 (536)
                      |++.++
T Consensus        93 e~l~~~   98 (158)
T 1htw_A           93 EELEFM   98 (158)
T ss_dssp             THHHHS
T ss_pred             HHHHHc
Confidence            999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.50  E-value=2.8e-14  Score=156.96  Aligned_cols=87  Identities=25%  Similarity=0.282  Sum_probs=77.3

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...+++++++|.|++                ..++++||++++||++||+||||||||||+++|+|+.+|++|+|.+   
T Consensus       355 ~~~l~~~~l~~~~~~----------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---  415 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS----------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---  415 (607)
T ss_dssp             CEEEEECCEEEECSS----------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---
T ss_pred             ceEEEEeceEEEecc----------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---
Confidence            357999999999953                3689999999999999999999999999999999999999999875   


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                 ++.+||+||+..+.+++||+|++...
T Consensus       416 -----------~~~i~~v~Q~~~~~~~~tv~e~~~~~  441 (607)
T 3bk7_A          416 -----------DLTVAYKPQYIKAEYEGTVYELLSKI  441 (607)
T ss_dssp             -----------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred             -----------eeEEEEEecCccCCCCCcHHHHHHhh
Confidence                       13599999998888899999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.49  E-value=3.9e-14  Score=153.98  Aligned_cols=87  Identities=25%  Similarity=0.268  Sum_probs=77.1

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++++++.|++                ..++++||++++||++||+||||||||||+++|+|+.+|++|+|.+   
T Consensus       285 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---  345 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS----------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---  345 (538)
T ss_dssp             CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---
T ss_pred             CeEEEEeeEEEEECC----------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---
Confidence            357999999999953                3689999999999999999999999999999999999999999874   


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                 +..+||+||+..+.+.+||.|++...
T Consensus       346 -----------~~~i~~v~Q~~~~~~~~tv~~~~~~~  371 (538)
T 1yqt_A          346 -----------DLTVAYKPQYIKADYEGTVYELLSKI  371 (538)
T ss_dssp             -----------CCCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred             -----------CceEEEEecCCcCCCCCcHHHHHHhh
Confidence                       13599999998888899999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.46  E-value=9.7e-14  Score=150.62  Aligned_cols=88  Identities=18%  Similarity=0.146  Sum_probs=77.7

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      ...+++++++|.|++                ..+++.|+++++||++||+||||||||||+++|+|+.+|++|+|.++| 
T Consensus       267 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-  329 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGD----------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-  329 (538)
T ss_dssp             CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-
T ss_pred             cceEEEcceEEEECC----------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-
Confidence            457899999999964                367888999999999999999999999999999999999999998653 


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                                  +.++|+||+......+||+|++...
T Consensus       330 ------------~~i~~~~q~~~~~~~~tv~~~l~~~  354 (538)
T 3ozx_A          330 ------------QILSYKPQRIFPNYDGTVQQYLENA  354 (538)
T ss_dssp             ------------CCEEEECSSCCCCCSSBHHHHHHHH
T ss_pred             ------------eeeEeechhcccccCCCHHHHHHHh
Confidence                        3589999998777789999999874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.46  E-value=5.2e-14  Score=160.49  Aligned_cols=90  Identities=24%  Similarity=0.310  Sum_probs=76.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++++|+++.|++..             +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. 
T Consensus       670 ~mL~v~nLs~~Y~g~~-------------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-  735 (986)
T 2iw3_A          670 AIVKVTNMEFQYPGTS-------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-  735 (986)
T ss_dssp             EEEEEEEEEECCTTCS-------------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-
T ss_pred             ceEEEEeeEEEeCCCC-------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-
Confidence            4699999999996521             15899999999999999999999999999999999999999999998751 


Q ss_pred             cCCcccHHHhhcceEEEcCCCCC----CCCCCHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNIL----WDALSGEEHLHL  519 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l----~~~lTv~e~L~~  519 (536)
                                 .++||++|+...    ..+.|++|++.+
T Consensus       736 -----------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~  763 (986)
T 2iw3_A          736 -----------CRIAYIKQHAFAHIESHLDKTPSEYIQW  763 (986)
T ss_dssp             -----------CCEEEECHHHHHHGGGCTTSCHHHHHHH
T ss_pred             -----------cceEeeccchhhhhhcccccCHHHHHHH
Confidence                       249999998531    235799999876

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.38  E-value=3.1e-14  Score=150.70  Aligned_cols=105  Identities=13%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE-
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF-  483 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~-  483 (536)
                      ..++++++++.|+..              ..|++++ |++.+||+++|+||||||||||+++|+|+.+|++|.+.++|. 
T Consensus       130 ~~l~~~~v~~~~~tg--------------~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r  194 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG--------------VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGER  194 (438)
T ss_dssp             CTTTSCCCCSBCCCS--------------CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CceEEeccceecCCC--------------ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEecee
Confidence            357889999999632              2599999 999999999999999999999999999999999999999998 


Q ss_pred             --ecCCc----ccHHHhhcceEEEcCC-CCCCCCCCHHHHHHHHHHhc
Q 009374          484 --SIRSS----VSMTNIQKSIGVCPQF-NILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       484 --~i~~~----~~~~~~~~~ig~~pQ~-~~l~~~lTv~e~L~~~~~lk  524 (536)
                        ++...    .+....++.++|++|+ +.+++.+|+.|++.+.+...
T Consensus       195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~  242 (438)
T 2dpy_A          195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF  242 (438)
T ss_dssp             HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence              44210    0123467889999995 66788999999998877643

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.37  E-value=1.1e-13  Score=139.73  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=71.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHHh--hcceEEEcCCCC-CCC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQFNI-LWD  509 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~~--~~~ig~~pQ~~~-l~~  509 (536)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+....   +...+  ++.+++++|++. +++
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            457789999999999999999999999999999999999999999999874221   11222  457999999998 999


Q ss_pred             CCCHHHHHHHHH
Q 009374          510 ALSGEEHLHLFA  521 (536)
Q Consensus       510 ~lTv~e~L~~~~  521 (536)
                      .+|++|++.+..
T Consensus       169 ~~~v~e~l~~~~  180 (302)
T 3b9q_A          169 ATVLSKAVKRGK  180 (302)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.36  E-value=1.6e-15  Score=146.05  Aligned_cols=74  Identities=12%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALS  512 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lT  512 (536)
                      ..|+|+||++++|++++|+||||||||||+++|+|++ |  |++.+ |.++.........++.++|+||+..+|+.++
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   84 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL   84 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence            4799999999999999999999999999999999998 5  99999 8776321111224567999999987766543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.34  E-value=1.9e-13  Score=150.28  Aligned_cols=98  Identities=22%  Similarity=0.228  Sum_probs=72.3

Q ss_pred             eEEE--------eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374          406 AVQI--------RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (536)
Q Consensus       406 ~i~~--------~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~  477 (536)
                      ++++        +|++|+|++.              ..+++|+| ++++||++||+||||||||||+++|+|+++|++|+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVN--------------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             eEEEecCCccccCCeEEEECCC--------------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            5788        8889999542              13899999 99999999999999999999999999999999999


Q ss_pred             E---------EEcCEecCCc-ccHHHhhcceEEEcCCCCCCCC---CCHHHHHH
Q 009374          478 A---------LIYGFSIRSS-VSMTNIQKSIGVCPQFNILWDA---LSGEEHLH  518 (536)
Q Consensus       478 i---------~i~g~~i~~~-~~~~~~~~~ig~~pQ~~~l~~~---lTv~e~L~  518 (536)
                      +         .++|.++... ......+..+++.+|+....+.   .|++|++.
T Consensus       148 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~  201 (607)
T 3bk7_A          148 DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK  201 (607)
T ss_dssp             TCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHH
T ss_pred             cccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhh
Confidence            5         3455544110 0001123468999997443222   38999885

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.31  E-value=3.2e-13  Score=146.75  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             EEE-eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE-------
Q 009374          407 VQI-RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-------  478 (536)
Q Consensus       407 i~~-~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-------  478 (536)
                      .++ +||+|.|++.              ..+++++| ++++||++||+||||||||||+++|+|+++|++|++       
T Consensus        21 ~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~   85 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--------------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV   85 (538)
T ss_dssp             ---CCCEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHH
T ss_pred             hhHhcCcEEEECCc--------------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhh
Confidence            344 5899999642              14899999 999999999999999999999999999999999995       


Q ss_pred             --EEcCEecCCcc-cHHHhhcceEEEcCCCCCCCC---CCHHHHHH
Q 009374          479 --LIYGFSIRSSV-SMTNIQKSIGVCPQFNILWDA---LSGEEHLH  518 (536)
Q Consensus       479 --~i~g~~i~~~~-~~~~~~~~ig~~pQ~~~l~~~---lTv~e~L~  518 (536)
                        .++|.++.... .....+..+++++|+..+.+.   .|++|++.
T Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~  131 (538)
T 1yqt_A           86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLK  131 (538)
T ss_dssp             HHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHH
T ss_pred             HHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHh
Confidence              34554431000 001123468999997554432   38888875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.30  E-value=3.9e-14  Score=135.23  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=49.7

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      +.+|+|+    ++||+++|+||||||||||+++|+|+ +|++|+|.  +.++.  ......++.+||+||+.
T Consensus        13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~--~~~~~~~~~ig~v~q~~   75 (208)
T 3b85_A           13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT--RPAVEAGEKLGFLPGTL   75 (208)
T ss_dssp             HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE--ECSCCTTCCCCSSCC--
T ss_pred             HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec--CCchhhhcceEEecCCH
Confidence            3689996    89999999999999999999999999 99999994  33331  11123567899999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.29  E-value=3.5e-12  Score=145.51  Aligned_cols=85  Identities=13%  Similarity=0.158  Sum_probs=69.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..+...|++|.|++.               .+++|+||++++||++||+||||||||||+++|+|      |++  +|.+
T Consensus       434 ~~L~~~~ls~~yg~~---------------~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~  490 (986)
T 2iw3_A          434 EDLCNCEFSLAYGAK---------------ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFP  490 (986)
T ss_dssp             CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCC
T ss_pred             ceeEEeeEEEEECCE---------------EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCc
Confidence            457777999999642               59999999999999999999999999999999995      543  4544


Q ss_pred             cCCcccHHHhhcceEEEcCCC-CCCCCCCHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFN-ILWDALSGEEHLHL  519 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv~e~L~~  519 (536)
                      ..  .     +.+++|++|+. .+++++|+.|++.+
T Consensus       491 ~~--~-----~~~~~~v~q~~~~~~~~ltv~e~l~~  519 (986)
T 2iw3_A          491 TQ--E-----ECRTVYVEHDIDGTHSDTSVLDFVFE  519 (986)
T ss_dssp             CT--T-----TSCEEETTCCCCCCCTTSBHHHHHHT
T ss_pred             cc--c-----ceeEEEEcccccccccCCcHHHHHHH
Confidence            31  1     12479999974 78899999999975

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.29  E-value=6.6e-13  Score=136.68  Aligned_cols=84  Identities=15%  Similarity=0.092  Sum_probs=71.6

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHHh--hcceEEEcCCCC-CCCCC
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQFNI-LWDAL  511 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~~--~~~ig~~pQ~~~-l~~~l  511 (536)
                      +.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+....   +...+  |+.+++++|+.. +++.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            5688999999999999999999999999999999999999999999874211   11222  457999999988 89999


Q ss_pred             CHHHHHHHHH
Q 009374          512 SGEEHLHLFA  521 (536)
Q Consensus       512 Tv~e~L~~~~  521 (536)
                      |++|++.+..
T Consensus       228 tv~e~l~~~~  237 (359)
T 2og2_A          228 VLSKAVKRGK  237 (359)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.27  E-value=9e-14  Score=140.81  Aligned_cols=97  Identities=13%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEE-------------------ecCcEEEEeCCCCCchhHHHHh
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI-------------------AKDQLFCLLGPNGAGKTTTISC  466 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v-------------------~~gei~~LlG~NGaGKSTll~~  466 (536)
                      .+++++|+|.|+                 ++++++++.+                   .+|+++||+|+|||||||++++
T Consensus        37 ~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~   99 (308)
T 1sq5_A           37 DLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARV   99 (308)
T ss_dssp             TCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHH
T ss_pred             ccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHH
Confidence            588999999993                 4889999988                   9999999999999999999999


Q ss_pred             HcCccc--cCccEEEE---cCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          467 LTGITP--VTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       467 l~g~~~--pt~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      |+|++.  |++|+|.+   +|....     ...++.+|++ |...+++.+|+.+++.+..++++
T Consensus       100 L~~~l~~~~~~G~i~vi~~d~~~~~-----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~  157 (308)
T 1sq5_A          100 LQALLSRWPEHRRVELITTDGFLHP-----NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKS  157 (308)
T ss_dssp             HHHHHTTSTTCCCEEEEEGGGGBCC-----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTT
T ss_pred             HHHHHhhCCCCCeEEEEecCCccCc-----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhC
Confidence            999998  99999999   887642     1235568899 88888899999999999888764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.25  E-value=4e-14  Score=134.85  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=51.1

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      ..++|  .++++||+++|+||||||||||+++|+|+++.    +.+++.... .......++.+||+||+..+++.+|+.
T Consensus        10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~-~~~~~~~~~~i~~~~q~~~~~~~~~~~   82 (207)
T 1znw_A           10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATT-RAPRPGEVDGVDYHFIDPTRFQQLIDQ   82 (207)
T ss_dssp             -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEES-SCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred             cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccc-cCCcccccCCCeeEecCHHHHHHHHhc
Confidence            57888  79999999999999999999999999999863    344432211 111112356799999998888888888


Q ss_pred             HHHH
Q 009374          515 EHLH  518 (536)
Q Consensus       515 e~L~  518 (536)
                      |++.
T Consensus        83 ~~l~   86 (207)
T 1znw_A           83 GELL   86 (207)
T ss_dssp             TCEE
T ss_pred             CCce
Confidence            7764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.24  E-value=1.4e-12  Score=138.32  Aligned_cols=86  Identities=20%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHH--hhcceEEEcCCCCCCCCC
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTN--IQKSIGVCPQFNILWDAL  511 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~--~~~~ig~~pQ~~~l~~~l  511 (536)
                      -+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+....   +...  .|+.++|++|+..+++.+
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            46889999999999999999999999999999999999999999987763211   1122  366799999999988999


Q ss_pred             CHHHHHHHHHH
Q 009374          512 SGEEHLHLFAN  522 (536)
Q Consensus       512 Tv~e~L~~~~~  522 (536)
                      |+++++.+...
T Consensus       363 tV~e~l~~a~~  373 (503)
T 2yhs_A          363 VIFDAIQAAKA  373 (503)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.23  E-value=1.9e-12  Score=126.56  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=53.1

Q ss_pred             cceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG  513 (536)
Q Consensus       434 ~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv  513 (536)
                      +.+|+|+||++++|+++||+|||||||||++++|+|++    |.+.++           ..++.+++++|++ +++.+|+
T Consensus        12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~~~~~i~~v~~d~-~~~~l~~   75 (245)
T 2jeo_A           12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------QRQRKVVILSQDR-FYKVLTA   75 (245)
T ss_dssp             -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------GGGCSEEEEEGGG-GBCCCCH
T ss_pred             ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------ccCCceEEEeCCc-CccccCH
Confidence            46999999999999999999999999999999999976    443332           3467899999995 7788999


Q ss_pred             HHHHHHHHHhcC
Q 009374          514 EEHLHLFANIKG  525 (536)
Q Consensus       514 ~e~L~~~~~lkg  525 (536)
                      .|++.+.....+
T Consensus        76 ~~~~~~~~~~~~   87 (245)
T 2jeo_A           76 EQKAKALKGQYN   87 (245)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             hHhhhhhccCCC
Confidence            999887654433

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.22  E-value=2.4e-12  Score=143.80  Aligned_cols=83  Identities=23%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHH---------------------HhHcCccccC-------ccEEEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------------------SCLTGITPVT-------GGDALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll---------------------~~l~g~~~pt-------~G~i~i~g~~i~  486 (536)
                      ++|+|+||+|++||++||+||||||||||+                     +++.|+..|+       .|.+.++|.+..
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~  111 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS  111 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence            599999999999999999999999999998                     8999999998       455556665432


Q ss_pred             CcccHHHhhcceEEEcCCCC-------------------CCCCCCHHHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNI-------------------LWDALSGEEHLHLFAN  522 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~-------------------l~~~lTv~e~L~~~~~  522 (536)
                           ...++.+|+++|...                   .++.+|++|++.++..
T Consensus       112 -----~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~  161 (670)
T 3ux8_A          112 -----RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDG  161 (670)
T ss_dssp             --------CCBHHHHTTCC-------------------------CC---------
T ss_pred             -----ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhc
Confidence                 112344555555432                   3467899999988643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.20  E-value=4.3e-13  Score=133.23  Aligned_cols=72  Identities=18%  Similarity=0.069  Sum_probs=45.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lk  524 (536)
                      .++|+||||||||||+|+|+|+..|++|++.++|.++..    ...++.+|++||++.+++.+||.|++.+.....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~----~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~   75 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK----TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQIN   75 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC----CCSCCEEEESCC----CCEEEEECCCC--CCSB
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc----ceeeeeeEEEeecCCCcCCceEEechhhhhhcc
Confidence            479999999999999999999999999999999988742    123577999999999999999999998865444

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.19  E-value=2.7e-13  Score=137.45  Aligned_cols=88  Identities=13%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEE-----------------------EecCcEEEEeCCCCCch
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVN-----------------------IAKDQLFCLLGPNGAGK  460 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~-----------------------v~~gei~~LlG~NGaGK  460 (536)
                      +..|++++|+|.|.                 ++++++++.                       +++|+++||+|||||||
T Consensus        41 ~~~i~~~~v~~~y~-----------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGK  103 (312)
T 3aez_A           41 GEQIDLLEVEEVYL-----------------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGK  103 (312)
T ss_dssp             TCCCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCH
T ss_pred             CCeEEeeehhhhhh-----------------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchH
Confidence            34688999999994                 345555543                       89999999999999999


Q ss_pred             hHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCCh
Q 009374          461 TTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPL  528 (536)
Q Consensus       461 STll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~  528 (536)
                      |||+++|+|+++|+.|.                  +.+|+++|++.+++. |++|++.++. .+|.+.
T Consensus       104 STL~~~L~gll~~~~G~------------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~  151 (312)
T 3aez_A          104 STTARVLQALLARWDHH------------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPE  151 (312)
T ss_dssp             HHHHHHHHHHHHTSTTC------------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGG
T ss_pred             HHHHHHHHhhccccCCC------------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCCh
Confidence            99999999999997653                  358999999999998 9999986642 245543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.19  E-value=8.8e-14  Score=133.89  Aligned_cols=88  Identities=22%  Similarity=0.245  Sum_probs=68.9

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH----HH
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG----EE  515 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv----~e  515 (536)
                      -.+++|++++|+||||||||||+++|+|+.+|  ..|.|.+.+++.+.     ..++.++|+||...+|+.+|+    .|
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~~~f~~~~~~~~f~E   85 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNHDEFKEMISRDAFLE   85 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence            46899999999999999999999999999986  78999888866531     235679999999999999888    78


Q ss_pred             HHHHHHHhcCCChHhHhhh
Q 009374          516 HLHLFANIKGLPLDSIKSV  534 (536)
Q Consensus       516 ~L~~~~~lkg~~~~~~~~~  534 (536)
                      |+.+++...|.+.+.+++.
T Consensus        86 ~~~~~~~~yg~~~~~v~~~  104 (219)
T 1s96_A           86 HAEVFGNYYGTSREAIEQV  104 (219)
T ss_dssp             EEEETTEEEEEEHHHHHHH
T ss_pred             HHHHHhccCCCCHHHHHHH
Confidence            8877666667666655544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.18  E-value=4.3e-12  Score=131.29  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=64.8

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEc-CCCCC--CCCCC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP-QFNIL--WDALS  512 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~p-Q~~~l--~~~lT  512 (536)
                      +++++++.+++|++++|+||||||||||+++|+|+++|++|.|+++|..-   ......++.+++++ |++.+  ++..|
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e---~~~~~~~~~v~~v~~q~~~~~~~~~~t  240 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE---LFLPDHPNHVHLFYPSEAKEEENAPVT  240 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---CCCTTCSSEEEEECC----------CC
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---cCccccCCEEEEeecCccccccccccC
Confidence            34999999999999999999999999999999999999999999998421   11223467799999 87765  57889


Q ss_pred             HHHHHHHHHH
Q 009374          513 GEEHLHLFAN  522 (536)
Q Consensus       513 v~e~L~~~~~  522 (536)
                      ++++|....+
T Consensus       241 ~~~~i~~~l~  250 (361)
T 2gza_A          241 AATLLRSCLR  250 (361)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999987644

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.16  E-value=2.3e-11  Score=133.59  Aligned_cols=70  Identities=21%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             ceeeceeEEEecC-----cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCC
Q 009374          435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD  509 (536)
Q Consensus       435 ~al~~lsl~v~~g-----ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~  509 (536)
                      .+++++||++++|     |++||+||||||||||+++|+|+.+|++|+.      +.        +..++|+||+.....
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i~~~~q~~~~~~  426 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNVSMKPQKIAPKF  426 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCEEEECSSCCCCC
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcEEEecccccccC
Confidence            4899999999999     8899999999999999999999999999962      21        246999999977777


Q ss_pred             CCCHHHHHH
Q 009374          510 ALSGEEHLH  518 (536)
Q Consensus       510 ~lTv~e~L~  518 (536)
                      ..|++|++.
T Consensus       427 ~~tv~e~~~  435 (608)
T 3j16_B          427 PGTVRQLFF  435 (608)
T ss_dssp             CSBHHHHHH
T ss_pred             CccHHHHHH
Confidence            789999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.15  E-value=8.3e-12  Score=128.21  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=69.2

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..++.++++|.|+..              +.|+|++ |.|.+||++||+|+||||||||+++|+|+.+|+.|.+.+.|++
T Consensus        44 ~~i~~~~l~~~~~tg--------------~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           44 DPLLRQVIDQPFILG--------------VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             CSTTCCCCCSEECCS--------------CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CCeeecccceecCCC--------------CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            357889999999632              2599999 9999999999999999999999999999999999999999865


Q ss_pred             cCCc------ccHHHhhcceEEEcCCC
Q 009374          485 IRSS------VSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       485 i~~~------~~~~~~~~~ig~~pQ~~  505 (536)
                      .+..      ......++.+++++|.+
T Consensus       109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~  135 (347)
T 2obl_A          109 GREVNEFLALLPQSTLSKCVLVVTTSD  135 (347)
T ss_dssp             HHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred             HHHHHHHHHhhhhhhhhceEEEEECCC
Confidence            2100      01123456789999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.5e-12  Score=138.58  Aligned_cols=84  Identities=15%  Similarity=0.059  Sum_probs=71.0

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-E-EEEcC
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-D-ALIYG  482 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~-i~i~g  482 (536)
                      .+++++||+|.|                     +++||++++||+++|+||||||||||+|+|+|+.+|++| + |+++|
T Consensus       117 ~mi~~~nl~~~y---------------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg  175 (460)
T 2npi_A          117 TMKYIYNLHFML---------------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL  175 (460)
T ss_dssp             THHHHHHHHHHH---------------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred             chhhhhhhhehh---------------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence            356777777766                     268899999999999999999999999999999999999 9 99998


Q ss_pred             EecCCcccHHHhhcceEEEcCCCC---CCCCCCHHHHHHHH
Q 009374          483 FSIRSSVSMTNIQKSIGVCPQFNI---LWDALSGEEHLHLF  520 (536)
Q Consensus       483 ~~i~~~~~~~~~~~~ig~~pQ~~~---l~~~lTv~e~L~~~  520 (536)
                       +         .++.+|++||+..   +.+.+|++|++ +.
T Consensus       176 -~---------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~  205 (460)
T 2npi_A          176 -D---------PQQPIFTVPGCISATPISDILDAQLPT-WG  205 (460)
T ss_dssp             -C---------TTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred             -C---------ccCCeeeeccchhhcccccccchhhhh-cc
Confidence             2         2567999999984   45568999988 53

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.14  E-value=1.1e-12  Score=137.52  Aligned_cols=74  Identities=14%  Similarity=0.064  Sum_probs=62.4

Q ss_pred             ceeeceeEEEecCc--------------------EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHh
Q 009374          435 HAIKGLWVNIAKDQ--------------------LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI  494 (536)
Q Consensus       435 ~al~~lsl~v~~ge--------------------i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~  494 (536)
                      .+++++|+++++||                    ++||+|+||||||||+|+|+|+.+|++|+|.++|.++.        
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t--------  108 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT--------  108 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence            69999999999999                    99999999999999999999999999999999987651        


Q ss_pred             hcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          495 QKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       495 ~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      +  .|+++|++ .++.+|++|++.+
T Consensus       109 ~--~~~v~q~~-~~~~ltv~D~~g~  130 (413)
T 1tq4_A          109 M--ERHPYKHP-NIPNVVFWDLPGI  130 (413)
T ss_dssp             C--CCEEEECS-SCTTEEEEECCCG
T ss_pred             e--eEEecccc-ccCCeeehHhhcc
Confidence            1  27899985 5778888777543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.14  E-value=1.3e-11  Score=124.48  Aligned_cols=75  Identities=21%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc---cHHHh--hcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV---SMTNI--QKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~---~~~~~--~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.|+....   +...+  ++.+++++|+..+.+.+|++|++...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999874322   12222  45799999999999999999999764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.13  E-value=7.6e-13  Score=145.95  Aligned_cols=102  Identities=14%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeece----------eEEEecCcEEEEeCCCCCchhHHHHhHcCcccc-C
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGL----------WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-T  474 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~l----------sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-t  474 (536)
                      .+.+++|++.|++..             ...++.+          +++++.   +||+|+||||||||+++|+|+..| +
T Consensus        10 ~i~~~~l~~~~~~~~-------------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~   73 (608)
T 3szr_A           10 SVAENNLCSQYEEKV-------------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG   73 (608)
T ss_dssp             ----------CHHHH-------------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----
T ss_pred             hhhhhhhhHHHHHHH-------------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC
Confidence            477889999996421             0233333          356654   999999999999999999999988 7


Q ss_pred             ccEEEEcCEecCC--cccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          475 GGDALIYGFSIRS--SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       475 ~G~i~i~g~~i~~--~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      +|.|+++|.++..  ..+...+++.+||+||+..+++.+||+|++......
T Consensus        74 sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~  124 (608)
T 3szr_A           74 SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA  124 (608)
T ss_dssp             ---CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred             CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence            9999999998621  112345678899999999999999999999887544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.12  E-value=4.8e-13  Score=137.10  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++++++.|++.               .+++++++++.+|++++|+|+||||||||+++|+|++.|++|+|.+.|.++
T Consensus        29 ~ie~~~~~~~~~~~---------------~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           29 LAESRRADHRAAVR---------------DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   93 (337)
T ss_dssp             HHTCSSHHHHHHHH---------------HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             HHeeCCcccccChH---------------HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence            36677888888532               589999999999999999999999999999999999999999999999887


Q ss_pred             CCcc---cHHHhhcceEEEcCCCCCCCC
Q 009374          486 RSSV---SMTNIQKSIGVCPQFNILWDA  510 (536)
Q Consensus       486 ~~~~---~~~~~~~~ig~~pQ~~~l~~~  510 (536)
                      ....   .....++++|+++|+..++..
T Consensus        94 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~  121 (337)
T 2qm8_A           94 SSTRTGGSILGDKTRMARLAIDRNAFIR  121 (337)
T ss_dssp             GGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred             cccccccchHHHhhhheeeccCcccccc
Confidence            3211   112356789999999988864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.11  E-value=4.4e-12  Score=137.70  Aligned_cols=70  Identities=13%  Similarity=0.079  Sum_probs=61.0

Q ss_pred             ceeeceeE-EEecCcEEEEeCCCCCchhHHHHh--HcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC--LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~lsl-~v~~gei~~LlG~NGaGKSTll~~--l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~  506 (536)
                      .+|+++++ ++++||+++|+||||||||||+++  ++|+.+|++|.++++|.+.  ..+..+.++.+|+++|+..
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~~~~~~~~~~~g~~~q~~~   98 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--PQDIIKNARSFGWDLAKLV   98 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHGGGTCCHHHHH
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCChHHhh
Confidence            69999999 999999999999999999999999  7899999999999999874  2334455677999999743

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.09  E-value=7.1e-13  Score=133.38  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++||++.|+ .               .+|+++||+|++||+++|+||||||||||+++|+|++   +|+|...+....
T Consensus       102 i~~~~vs~~y~-~---------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~  162 (305)
T 2v9p_A          102 FNYQNIELITF-I---------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKS  162 (305)
T ss_dssp             HHHTTCCHHHH-H---------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTS
T ss_pred             EEEEEEEEEcC-h---------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcc
Confidence            67788999985 1               5999999999999999999999999999999999999   899976543211


Q ss_pred             CcccHHHhhc-ceEEEcC
Q 009374          487 SSVSMTNIQK-SIGVCPQ  503 (536)
Q Consensus       487 ~~~~~~~~~~-~ig~~pQ  503 (536)
                      ... ...++. ++++.++
T Consensus       163 ~lf-~~ti~~~ni~~~~~  179 (305)
T 2v9p_A          163 HFW-LASLADTRAALVDD  179 (305)
T ss_dssp             GGG-GGGGTTCSCEEEEE
T ss_pred             ccc-cccHHHHhhccCcc
Confidence            001 123443 6777653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.08  E-value=8.9e-12  Score=125.70  Aligned_cols=77  Identities=9%  Similarity=0.103  Sum_probs=53.3

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhhcceEEEcCCCC------------
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNI------------  506 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~------------  506 (536)
                      |++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|+++........ .+.+|+++|.+.            
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~-~~~~g~v~q~p~~~~~~~~~~~~~  242 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK-FDFGGYVVDTPGFANLEINDIEPE  242 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE-CTTSCEEESSCSSTTCCCCSSCHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE-cCCCCEEEECcCCCccCCCcCCHH
Confidence            346689999999999999999999999999999999999   8988753221111 236899999975            


Q ss_pred             ----CCCCCCHHHHHHHH
Q 009374          507 ----LWDALSGEEHLHLF  520 (536)
Q Consensus       507 ----l~~~lTv~e~L~~~  520 (536)
                          +++++|+ ||+.+.
T Consensus       243 ~~~~l~~~~~~-~n~~~~  259 (301)
T 1u0l_A          243 ELKHYFKEFGD-KQCFFS  259 (301)
T ss_dssp             HHGGGSTTSSS-CCCSST
T ss_pred             HHHHHHHhccc-ccCcCC
Confidence                6899999 888764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.07  E-value=5.1e-11  Score=121.33  Aligned_cols=79  Identities=20%  Similarity=0.132  Sum_probs=65.7

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccH---HHhhc--ceEEEcCCCCCCCCCCHHHHH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSM---TNIQK--SIGVCPQFNILWDALSGEEHL  517 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~---~~~~~--~ig~~pQ~~~l~~~lTv~e~L  517 (536)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+......   ..+++  .+.+++|...+.+.+|++|++
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            3478999999999999999999999999999999999999998532222   22333  355999999999999999999


Q ss_pred             HHHH
Q 009374          518 HLFA  521 (536)
Q Consensus       518 ~~~~  521 (536)
                      .+..
T Consensus       205 ~~~~  208 (328)
T 3e70_C          205 QHAK  208 (328)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.03  E-value=3.3e-12  Score=133.77  Aligned_cols=88  Identities=15%  Similarity=0.052  Sum_probs=59.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcE--EEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei--~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+++++ +|.|++.               + ++++||++++|++  ++|+|+||||||||+++|+|+.        ++|.
T Consensus        16 ~l~~~~-~~~y~~~---------------~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~   70 (427)
T 2qag_B           16 TVPLAG-HVGFDSL---------------P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGE   70 (427)
T ss_dssp             -CCCCC-CC-CC-----------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C---
T ss_pred             eEEEee-EEEECCe---------------e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCC
Confidence            455666 7788532               4 9999999999999  9999999999999999999984        3344


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ++... .....++.+|+++|++.+++.+|+.|++.+
T Consensus        71 ~~~~~-~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~  105 (427)
T 2qag_B           71 PATHT-QPGVQLQSNTYDLQESNVRLKLTIVSTVGF  105 (427)
T ss_dssp             ----C-CSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred             cCCCC-CccceEeeEEEEeecCccccccchhhhhhh
Confidence            43210 111234579999999988888888777654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.02  E-value=4.1e-11  Score=127.48  Aligned_cols=51  Identities=18%  Similarity=0.066  Sum_probs=49.1

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      .+++++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            589999999999 999999999999999999999999999999999998874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.00  E-value=6.2e-11  Score=120.98  Aligned_cols=76  Identities=18%  Similarity=0.146  Sum_probs=62.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      +++++++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+..   .....++.+++++|     ...+.++
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---~~~~~~~~i~~~~g-----gg~~~r~  231 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---VFKHHKNYTQLFFG-----GNITSAD  231 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---CCSSCSSEEEEECB-----TTBCHHH
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---ccccchhEEEEEeC-----CChhHHH
Confidence            789999999999999999999999999999999999999999999996531   11224567888876     4556666


Q ss_pred             HHHH
Q 009374          516 HLHL  519 (536)
Q Consensus       516 ~L~~  519 (536)
                      .|..
T Consensus       232 ~la~  235 (330)
T 2pt7_A          232 CLKS  235 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.99  E-value=5.2e-11  Score=120.10  Aligned_cols=71  Identities=17%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhh-cceEEEcCCCCCC-----CCCCH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQ-KSIGVCPQFNILW-----DALSG  513 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~-~~ig~~pQ~~~l~-----~~lTv  513 (536)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|+++....  ...+ +.+|+++|.+.+.     +++|+
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~~g~v~d~pg~~~~~l~~~lt~  237 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGKGSFVGDTPGFSKVEATMFVKP  237 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence            45679999999999999999999999 99999999999   998874321  2222 3689999998654     78999


Q ss_pred             HHHH
Q 009374          514 EEHL  517 (536)
Q Consensus       514 ~e~L  517 (536)
                       |++
T Consensus       238 -e~l  240 (302)
T 2yv5_A          238 -REV  240 (302)
T ss_dssp             -GGG
T ss_pred             -HHH
Confidence             877

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.99  E-value=1.9e-10  Score=120.83  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc--------------------------------------cCcc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--------------------------------------VTGG  476 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~--------------------------------------pt~G  476 (536)
                      .++++++|++.+| +++|+|+|||||||++++|.++..                                      +.+|
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~  127 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence            4899999999999 999999999999999999966653                                      4578


Q ss_pred             EEEEcCEecCCcccHHHhhcc-eEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          477 DALIYGFSIRSSVSMTNIQKS-IGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       477 ~i~i~g~~i~~~~~~~~~~~~-ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      +++++|.++. ..+..++.+. +++++|++.++.. +..+++.+...
T Consensus       128 ~i~ing~~~~-~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~  172 (415)
T 4aby_A          128 AARLSGEVVS-VRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDR  172 (415)
T ss_dssp             EEEETTEEEC-HHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHT
T ss_pred             EEEECCEECC-HHHHHHHHhhceEEecCccccccc-CHHHHHHHHHH
Confidence            9999999985 2334555444 8999999877654 67777766544

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.98  E-value=1.7e-11  Score=115.68  Aligned_cols=73  Identities=19%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 009374          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLH  518 (536)
Q Consensus       441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~  518 (536)
                      |+++.+|++++|+|||||||||++++|+|+.+    .+.+.|.++... .....+..+||++|+..+++.+++.+++.
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRP-KRPGDQEGVDYFFIDETRFQAMVKEGAFL   73 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSC-CCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCC-CchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence            56788999999999999999999999999964    577887766422 11233567999999988888877765543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.95  E-value=9.7e-11  Score=117.96  Aligned_cols=74  Identities=16%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE---cCEecCCcccHHHhhcceEEEcCCCCCCC----CCCHH
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI---YGFSIRSSVSMTNIQKSIGVCPQFNILWD----ALSGE  514 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i---~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~----~lTv~  514 (536)
                      +++.+|++++|+|+||||||||+|+|+|+.+|+.|+|.+   +|++++...  ...+..+|+++|.+.+..    ++|+ 
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt~-  244 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIEE-  244 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCCH-
Confidence            556789999999999999999999999999999999999   888764321  122223799999988776    7899 


Q ss_pred             HHHH
Q 009374          515 EHLH  518 (536)
Q Consensus       515 e~L~  518 (536)
                      |+|.
T Consensus       245 e~l~  248 (307)
T 1t9h_A          245 EELG  248 (307)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            8883

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.93  E-value=4.2e-11  Score=110.41  Aligned_cols=83  Identities=18%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             ceeEEEecCcEEEEeCCCCCchhHHHH------------hHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374          439 GLWVNIAKDQLFCLLGPNGAGKTTTIS------------CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       439 ~lsl~v~~gei~~LlG~NGaGKSTll~------------~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~  506 (536)
                      |+||++++||+++|+||||||||||++            .+.|+..++.|++.+.|............+...|+..+.+.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   80 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA   80 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence            689999999999999999999999999            77788777777766555322100111122234566666666


Q ss_pred             CCCCCCHHHHHHHHH
Q 009374          507 LWDALSGEEHLHLFA  521 (536)
Q Consensus       507 l~~~lTv~e~L~~~~  521 (536)
                      .+...+.+......+
T Consensus        81 ~~~~s~g~~qrv~iA   95 (171)
T 4gp7_A           81 TNVQESARKPLIEMA   95 (171)
T ss_dssp             CCCSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            666555555443333

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.92  E-value=2.1e-10  Score=117.76  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-cCccEEEEc-CEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIY-GFSIRSSVSMTNIQKSIGVCPQFNILWDALSG  513 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-pt~G~i~i~-g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv  513 (536)
                      -++++++. .+|++++|+||||||||||+|+|+|+.+ |+.|+|.++ |.+..     ...++.++++||...+++..|+
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-----tt~~~~i~~v~q~~~l~dtpgv  278 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-----TTTAARLYHFPHGGDVIDSPGV  278 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCEEEECHHH
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-----ceEEEEEEEECCCCEecCcccH
Confidence            46667664 4899999999999999999999999999 999999987 76541     1235679999999999999999


Q ss_pred             HHHHHHHHHhcCCChHhHh
Q 009374          514 EEHLHLFANIKGLPLDSIK  532 (536)
Q Consensus       514 ~e~L~~~~~lkg~~~~~~~  532 (536)
                      +|+     .+.+++.+++.
T Consensus       279 ~e~-----~l~~l~~~e~~  292 (358)
T 2rcn_A          279 REF-----GLWHLEPEQIT  292 (358)
T ss_dssp             HTC-----CCCCCCHHHHH
T ss_pred             HHh-----hhcCCCHHHHH
Confidence            884     23455554443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.91  E-value=7.8e-11  Score=109.90  Aligned_cols=73  Identities=14%  Similarity=0.017  Sum_probs=56.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      .+++|++++|+|+|||||||++++|+|.  |+.|.|.++|.++...   ...++.++|.+|...  +.+|+.|++...+.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~---~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~   77 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGY---IKHGRIDPWLPQSHQ--QNRMIMQIAADVAG   77 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHT---CCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhh---hhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence            4789999999999999999999999998  7889999998765210   011344678888654  46789999877653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.91  E-value=8.6e-11  Score=118.45  Aligned_cols=85  Identities=15%  Similarity=0.004  Sum_probs=37.0

Q ss_pred             eeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc-cccCccEEEEcCEecCCc
Q 009374          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTGGDALIYGFSIRSS  488 (536)
Q Consensus       410 ~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~-~~pt~G~i~i~g~~i~~~  488 (536)
                      .||+|.|++.               .++++++|+|      +|+|+||||||||+++|.|. ..|++| +.++|.++.. 
T Consensus         2 ~~l~~~~~~~---------------~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-   58 (301)
T 2qnr_A            2 SNLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-   58 (301)
T ss_dssp             -------------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------
T ss_pred             CCCcceECCE---------------EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-
Confidence            4678888542               5999999998      99999999999999999998 889999 8888877632 


Q ss_pred             ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          489 VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       489 ~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                       .. . .+.+++++|.+.+...||++|+..+.
T Consensus        59 -t~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~   87 (301)
T 2qnr_A           59 -TV-Q-IEASTVEIEERGVKLRLTVVDTPGYG   87 (301)
T ss_dssp             ---------CEEEEC---CCEEEEEEEEC---
T ss_pred             -cc-e-EeeEEEEecCCCcccCcchhhhhhhh
Confidence             11 1 35689999998888888887776653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.91  E-value=4.1e-10  Score=123.67  Aligned_cols=43  Identities=28%  Similarity=0.368  Sum_probs=39.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      ..+++++ .+++||++||+||||||||||+++|+|+++|++|++
T Consensus        92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            3677777 689999999999999999999999999999999997

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.86  E-value=9.4e-11  Score=113.09  Aligned_cols=63  Identities=14%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcc-------cHHHhhcceEEEcCC
Q 009374          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSV-------SMTNIQKSIGVCPQF  504 (536)
Q Consensus       441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~-------~~~~~~~~ig~~pQ~  504 (536)
                      ++++.+ ++++|+|||||||||++++|+|++.|++|+|.++|.++....       .....++.+|+++|.
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            466666 999999999999999999999999999999999998873111       112246789999984

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.86  E-value=2.6e-10  Score=107.01  Aligned_cols=54  Identities=26%  Similarity=0.328  Sum_probs=47.6

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      ||+++|+||||||||||+++|+|+++ ++| +.++|+++.   +.+..++.+|+++|+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~---~~~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE---EVRQGGRRIGFDVVTL   54 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC---EEETTSSEEEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc---hhHhhhceEEEEEEec
Confidence            78999999999999999999999999 999 999998873   3345678899999973

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.83  E-value=1.7e-11  Score=118.44  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=23.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc-Ccccc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT-GITPV  473 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~-g~~~p  473 (536)
                      +-.+++||++++|++++|+|||||||||++++|+ |+.++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            4678999999999999999999999999999999 99843

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.83  E-value=4.6e-10  Score=110.76  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ  503 (536)
                      .+++++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...     .+..+++++|
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-----~~~~~~~v~q   77 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-----FKHKKSIVNQ   77 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-----CCCSSSEEEE
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-----cCCcceeeeH
Confidence            3899999  9999999999999999999999999999998 99999999876321     1233566777

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.83  E-value=2e-10  Score=120.59  Aligned_cols=91  Identities=18%  Similarity=0.032  Sum_probs=56.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+.+++|++.|++.               .+++|++|+|      +|+|+||||||||+++|+|...++.|.   +|.++
T Consensus        11 ~l~~~~l~~~y~~~---------------~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~   66 (418)
T 2qag_C           11 YVGFANLPNQVYRK---------------SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSH   66 (418)
T ss_dssp             ----CCCCCCTTTT---------------TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-
T ss_pred             cEEEEecceeECCE---------------EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCccc
Confidence            58899999999643               5999999998      999999999999999999998866552   33222


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      ...  ....++.+|+++|.+.++..+|++|++.+...
T Consensus        67 ~~~--~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~  101 (418)
T 2qag_C           67 RIK--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA  101 (418)
T ss_dssp             ------CCEEEEEECC------CEEEEEEECC-----
T ss_pred             CCc--cceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence            100  01113568999999988888999888776543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.81  E-value=1.7e-09  Score=117.26  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=33.5

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      +++||++||+||||||||||+++|+|+++|++|++
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            45999999999999999999999999999999998

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.79  E-value=2.5e-09  Score=119.35  Aligned_cols=51  Identities=24%  Similarity=0.333  Sum_probs=43.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhH----------------------cCccccCccEEEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL----------------------TGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l----------------------~g~~~pt~G~i~i~g~~i~  486 (536)
                      .+|+|+||+|++||+++|+||||||||||+++|                      .|+..+ +|.+.++|.++.
T Consensus       336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~  408 (670)
T 3ux8_A          336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIG  408 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSC
T ss_pred             cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCC
Confidence            589999999999999999999999999999875                      355554 468888887763

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.73  E-value=2.6e-10  Score=119.81  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=63.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCc-cc--HHHhhcceEEEc---------
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSS-VS--MTNIQKSIGVCP---------  502 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~-~~--~~~~~~~ig~~p---------  502 (536)
                      .+++++ + .++|++++|+||||||||||+++|.|+++|++|+|.+.|.++... ..  ..++++.+|+.+         
T Consensus       157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr  234 (418)
T 1p9r_A          157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR  234 (418)
T ss_dssp             HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred             HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence            477887 5 389999999999999999999999999999999999998776311 00  112344566655         


Q ss_pred             CCCCC--CCC----CCHHHHHHHHH
Q 009374          503 QFNIL--WDA----LSGEEHLHLFA  521 (536)
Q Consensus       503 Q~~~l--~~~----lTv~e~L~~~~  521 (536)
                      |++.+  +++    .|+++++....
T Consensus       235 q~pd~i~vgEiRd~et~~~~l~a~~  259 (418)
T 1p9r_A          235 QDPDVVMVGEIRDLETAQIAVQASL  259 (418)
T ss_dssp             GCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred             cCCCeEEEcCcCCHHHHHHHHHHHH
Confidence            87655  344    68888887653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.71  E-value=5.2e-09  Score=112.70  Aligned_cols=85  Identities=21%  Similarity=0.305  Sum_probs=65.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe-cCCcccHHHhhcceEEEcCCC--------
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS-IRSSVSMTNIQKSIGVCPQFN--------  505 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~-i~~~~~~~~~~~~ig~~pQ~~--------  505 (536)
                      .+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+ +.. ..    +..+++..|..        
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~-~~----~~~v~~~~r~~~~~~~~~~  322 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKL-YH----ENWIAEVTRTGMGEGEIDM  322 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCC-CC----SSEEEEECBCCSSSCCBCH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccC-CC----CCeEEEEeecccccCCcCH
Confidence            58999999999999999999999999999999999999999999999865 211 00    12234443321        


Q ss_pred             --------------CCCCCCCHHHHHHHHHHhc
Q 009374          506 --------------ILWDALSGEEHLHLFANIK  524 (536)
Q Consensus       506 --------------~l~~~lTv~e~L~~~~~lk  524 (536)
                                    .++++++..|.+.++.+..
T Consensus       323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~  355 (511)
T 2oap_1          323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMS  355 (511)
T ss_dssp             HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence                          3446788888888776654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.70  E-value=2.1e-09  Score=102.93  Aligned_cols=68  Identities=19%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCcccc-------CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~p-------t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      .+++||+++|+||||||||||+++|+|...+       ..|.+++++.+...       ++.+++++|...+.++ |+.|
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-------~~~i~~~~~~~~~~~~-~~~~   92 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-------PERIREIAQNRGLDPD-EVLK   92 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-------HHHHHHHHHHTTSCHH-HHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-------HHHHHHHHHHcCCCHH-HHhh
Confidence            7999999999999999999999999996554       44488888765311       1224445555555444 5666


Q ss_pred             HHH
Q 009374          516 HLH  518 (536)
Q Consensus       516 ~L~  518 (536)
                      ++.
T Consensus        93 ~~~   95 (231)
T 4a74_A           93 HIY   95 (231)
T ss_dssp             TEE
T ss_pred             cEE
Confidence            543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.69  E-value=1.3e-09  Score=101.48  Aligned_cols=66  Identities=23%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHH
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN  522 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~  522 (536)
                      |++++|+|||||||||++++|++   |.+|.+.++|.++..       ....|+++|.....+.+|++|++...++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~   67 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-------MVVGGYRPPWESDELLALTWKNITDLTV   67 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-------TCCTTCCCGGGCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-------hhccccccCccchhHHHHHHHHHHHHHH
Confidence            68999999999999999999987   678999999866521       1246788887655667789999887654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.67  E-value=9.4e-09  Score=97.36  Aligned_cols=53  Identities=23%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCC--CCCCHHHHHHH
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW--DALSGEEHLHL  519 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~--~~lTv~e~L~~  519 (536)
                      .++|+++||+|+|||||||++++|+|++.|                       .+++++|++.++  ..+|++|++.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~   57 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRV   57 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCC
Confidence            578999999999999999999999999865                       478899988777  56888887654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.65  E-value=1.7e-09  Score=102.04  Aligned_cols=81  Identities=15%  Similarity=0.043  Sum_probs=56.5

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHH
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEE  515 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e  515 (536)
                      .+.+..+..++|++++|+|+|||||||++++|+|.+    |.+.++|.++..  .....+...|+.+|+..+++.+++.|
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~   91 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLA   91 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHH
Confidence            344444667889999999999999999999999987    899999987742  21222335789999888788888888


Q ss_pred             HHHHHHH
Q 009374          516 HLHLFAN  522 (536)
Q Consensus       516 ~L~~~~~  522 (536)
                      ++..-..
T Consensus        92 ~~~~~~~   98 (200)
T 4eun_A           92 EWMDARA   98 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.62  E-value=4.8e-09  Score=98.90  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc-----ccCccEEEE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----PVTGGDALI  480 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~-----~pt~G~i~i  480 (536)
                      .++++|++|.|+.                .++++  |.+.+|+.++|+|+||||||||++.|+|..     .|+.|++..
T Consensus         3 ~l~~~~~~~~~~~----------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A            3 NLNYQQTHFVMSA----------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             --------CEEEE----------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             chhhhhhhheeec----------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            3788999999952                37887  889999999999999999999999999998     889898765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.59  E-value=4.1e-09  Score=109.26  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=50.8

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcC
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ  503 (536)
                      ++++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.  .   ..++.+++++|
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e--~---~~~~~~~~v~Q  188 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE--Y---VFKHKKSIVNQ  188 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC--S---CCCCSSSEEEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh--h---hhccCceEEEe
Confidence            456655  7899999999999999999999999999998 899987776552  1   24567899999

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.56  E-value=2.6e-09  Score=104.10  Aligned_cols=70  Identities=17%  Similarity=0.163  Sum_probs=57.2

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHc---CccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      ++++++|+|+|||||||++++|+   |+..|+.|++.++|.+..  .   ...+.++.++|+..+++++|+.|++...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~   98 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS--T---EVGEMAKQYIEKSLLVPDHVITRLMMSE   98 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT--C---HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC--C---hHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999999   999999999988775431  1   2334456678888888999999998763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.56  E-value=2.5e-08  Score=113.30  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      +|+|+||+|++||++||+|+||||||||+++|.
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            799999999999999999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.56  E-value=6.2e-08  Score=109.58  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHh-HcCcc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISC-LTGIT  471 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~-l~g~~  471 (536)
                      +|+|+||+|++||++||+|+||||||||+++ |+|++
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            6999999999999999999999999999997 77654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.54  E-value=5.7e-09  Score=104.48  Aligned_cols=50  Identities=12%  Similarity=0.055  Sum_probs=44.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~  484 (536)
                      .+|+++++.+++|++++|+|+|||||||++++|+|...|++| .|.+.+.+
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            589999999999999999999999999999999999999988 67554433

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.51  E-value=1.5e-08  Score=99.20  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHc---CccccCccEEE--------EcCEecCCcccHHHhhcceEEEcCCC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~--------i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      ++|++++|+|+|||||||+.++|+   |+..+++|.++        .+|.++.......++++.+|+++|.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            789999999999999999999999   99999999999        89988854445677888999999753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.50  E-value=7.9e-09  Score=95.22  Aligned_cols=61  Identities=13%  Similarity=0.133  Sum_probs=44.2

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEecCCcc--cHHHhh-cceE----EEcCCCCCC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFSIRSSV--SMTNIQ-KSIG----VCPQFNILW  508 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~i~~~~--~~~~~~-~~ig----~~pQ~~~l~  508 (536)
                      ++++|+|+|||||||++++|.|+++|+   .|+|.++|.++.+..  +.+.+| +.+|    +++|+..+|
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~   73 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF   73 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence            689999999999999999999999998   899999998864211  134555 4677    899987766

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.50  E-value=1.4e-09  Score=111.10  Aligned_cols=82  Identities=23%  Similarity=0.231  Sum_probs=64.9

Q ss_pred             ceeeceeEEEecC-------cEEEEeCCCCCchhHHHHhHcCcc----ccCccEEEEcCEecCCcccHHHh-hcceEEEc
Q 009374          435 HAIKGLWVNIAKD-------QLFCLLGPNGAGKTTTISCLTGIT----PVTGGDALIYGFSIRSSVSMTNI-QKSIGVCP  502 (536)
Q Consensus       435 ~al~~lsl~v~~g-------ei~~LlG~NGaGKSTll~~l~g~~----~pt~G~i~i~g~~i~~~~~~~~~-~~~ig~~p  502 (536)
                      .+++++++.+.+|       +.++|.||||+|||||+++++|..    .+++|++..+|.++.  .-.... ++.+++++
T Consensus        32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~--~~~~~~~~~~v~~iD  109 (334)
T 1in4_A           32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA--AILTSLERGDVLFID  109 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH--HHHHHCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH--HHHHHccCCCEEEEc
Confidence            5899999999887       899999999999999999999998    788888777665542  111122 45799999


Q ss_pred             CCCCCCCCCCHHHHHHHH
Q 009374          503 QFNILWDALSGEEHLHLF  520 (536)
Q Consensus       503 Q~~~l~~~lTv~e~L~~~  520 (536)
                      |.+.+.+  ++.|+|...
T Consensus       110 E~~~l~~--~~~e~L~~~  125 (334)
T 1in4_A          110 EIHRLNK--AVEELLYSA  125 (334)
T ss_dssp             TGGGCCH--HHHHHHHHH
T ss_pred             chhhcCH--HHHHHHHHH
Confidence            9988876  788888543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.49  E-value=3.4e-08  Score=100.19  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCccc---HHHh-----hcceEEE-cCCCCC
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVS---MTNI-----QKSIGVC-PQFNIL  507 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~---~~~~-----~~~ig~~-pQ~~~l  507 (536)
                      +++++|.+++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.....   ...+     +.+++++ +|....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            368889999999999999999999999999999999999999999888743211   1233     5679999 787666


Q ss_pred             CCCCCHHHHHHHH
Q 009374          508 WDALSGEEHLHLF  520 (536)
Q Consensus       508 ~~~lTv~e~L~~~  520 (536)
                      .+..++.+++...
T Consensus       175 ~p~~~~~~~l~~~  187 (320)
T 1zu4_A          175 DPASVVFDAIKKA  187 (320)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666777877654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.48  E-value=4.2e-08  Score=113.62  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=41.9

Q ss_pred             ceEEEee-----eEEEcCCCCcCccccccCCCCCcceeeceeEEEec-------CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          405 VAVQIRG-----LVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK-------DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       405 ~~i~~~~-----l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~-------gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ..+++++     |.+.|.+.              ..+++|++|++++       |++++|+|||||||||+||++ |+..
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~--------------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD--------------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEEECCCC------CC--------------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEEEEeccccEEEEEecCC--------------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4689999     99888432              1589999999987       999999999999999999999 9986


Q ss_pred             c
Q 009374          473 V  473 (536)
Q Consensus       473 p  473 (536)
                      +
T Consensus       814 ~  814 (1022)
T 2o8b_B          814 V  814 (1022)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.47  E-value=3.4e-09  Score=109.64  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             eeeceeEEEec--CcEEEEeCCCCCchhHHHHhHcCccccCc----cEEEEc----CEecCCcccHHHhhcceEEEcCCC
Q 009374          436 AIKGLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPVTG----GDALIY----GFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       436 al~~lsl~v~~--gei~~LlG~NGaGKSTll~~l~g~~~pt~----G~i~i~----g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      ..+.|+++|++  |+.++|+|+||||||||+++|+|+++|++    |+++++    |.++.  ...++. +.+++++|..
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~--~~~~~~-~~I~~~~q~~  233 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQA--MQYSDY-PQMALGHQRY  233 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTS--SCTTTH-HHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCccc--CChhHH-HHHHHHHHHH
Confidence            35679999999  99999999999999999999999999999    998874    43331  112223 3477777754


Q ss_pred             C
Q 009374          506 I  506 (536)
Q Consensus       506 ~  506 (536)
                      .
T Consensus       234 ~  234 (365)
T 1lw7_A          234 I  234 (365)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.47  E-value=2.1e-08  Score=92.96  Aligned_cols=51  Identities=20%  Similarity=0.174  Sum_probs=35.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      .++|+||||||||||+++|+|++.     +.++|.+.... .....++.+||++|+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~-~~~~~~~~ig~~~~~~   52 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEV-RDPETKKRTGFRIITT   52 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEE-C------CCEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhh-ccccccceeEEEeecC
Confidence            579999999999999999999985     55677654211 0113467899999974

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.47  E-value=1.4e-08  Score=95.61  Aligned_cols=40  Identities=30%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccc-------------cCccEEEEcCEec
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI  485 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~-------------pt~G~i~i~g~~i  485 (536)
                      +++|++++|+||||||||||+++|+|+++             |..|+  ++|.++
T Consensus         1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~   53 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDY   53 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTB
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceE
Confidence            35799999999999999999999999875             67776  467654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.46  E-value=1.9e-08  Score=104.56  Aligned_cols=84  Identities=10%  Similarity=0.040  Sum_probs=63.2

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcC------------ccccCccEEEEcCEecCCcccHHHhhcce---EEEcCCCCC
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTG------------ITPVTGGDALIYGFSIRSSVSMTNIQKSI---GVCPQFNIL  507 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g------------~~~pt~G~i~i~g~~i~~~~~~~~~~~~i---g~~pQ~~~l  507 (536)
                      .+.+|+.+||+|+||||||||+|+|+|            ...|+.|.+.+.|..+....+.-..++.+   ..+.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999            66799999999875431111111122333   488899999


Q ss_pred             CCCCCHHHHH--HHHHHhcCC
Q 009374          508 WDALSGEEHL--HLFANIKGL  526 (536)
Q Consensus       508 ~~~lTv~e~L--~~~~~lkg~  526 (536)
                      .+.++..|.|  .+.+.+++.
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~  116 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAV  116 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTC
T ss_pred             ccCCcHHHHHHHHHHHHHHHH
Confidence            9999988887  777777654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.43  E-value=1.8e-08  Score=113.24  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc-cCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSG  513 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~-pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv  513 (536)
                      .+++|++|+   |++++|+|||||||||++|+++|+.. +..|.+.      .      ..+..+|+++|   +++.+++
T Consensus       567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p------a~~~~i~~v~~---i~~~~~~  628 (765)
T 1ewq_A          567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P------AEEAHLPLFDG---IYTRIGA  628 (765)
T ss_dssp             CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S------SSEEEECCCSE---EEEECCC
T ss_pred             eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e------hhccceeeHHH---hhccCCH
Confidence            689999999   99999999999999999999999874 6777642      1      11346888887   6788899


Q ss_pred             HHHHHH
Q 009374          514 EEHLHL  519 (536)
Q Consensus       514 ~e~L~~  519 (536)
                      .|++..
T Consensus       629 ~d~l~~  634 (765)
T 1ewq_A          629 SDDLAG  634 (765)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            998754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.43  E-value=1.5e-09  Score=102.25  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      +++++|++++|+|+|||||||++++|++...|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            35789999999999999999999999999977655

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.43  E-value=6e-09  Score=105.70  Aligned_cols=72  Identities=15%  Similarity=0.020  Sum_probs=56.1

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc--------ccCccEEEEcCEecCCccc--------------HHHhhcceEEE---c
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT--------PVTGGDALIYGFSIRSSVS--------------MTNIQKSIGVC---P  502 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~--------~pt~G~i~i~g~~i~~~~~--------------~~~~~~~ig~~---p  502 (536)
                      ++++|+|+|||||||++++|.|..        .|+.|++.|+|.++.....              ..+.++.++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            689999999999999999999987        7899999999998753210              22345567877   6


Q ss_pred             CCCCCCCCCCHHHHHHH
Q 009374          503 QFNILWDALSGEEHLHL  519 (536)
Q Consensus       503 Q~~~l~~~lTv~e~L~~  519 (536)
                      |+..++.++++.|++.+
T Consensus        85 q~~~~~~~~~v~E~~~l  101 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGM  101 (318)
T ss_dssp             HHTSCCCSEEEEEEETT
T ss_pred             hcCCCCCCEEEEeCCCC
Confidence            87776677777776543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.41  E-value=5.7e-08  Score=92.04  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCcccc---CccEEEEcCEec
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDALIYGFSI  485 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~p---t~G~i~i~g~~i  485 (536)
                      .++|++++|+||||||||||+++|+|+++|   +.|.|.++|..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            578999999999999999999999999986   478999998776

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.39  E-value=7.1e-08  Score=97.91  Aligned_cols=69  Identities=16%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc----------------------------------------------
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----------------------------------------------  471 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~----------------------------------------------  471 (536)
                      +++++++.+| +++|+|+|||||||++++|..+.                                              
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~   94 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA   94 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence            3568888899 99999999999999999998443                                              


Q ss_pred             ----ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCC
Q 009374          472 ----PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILW  508 (536)
Q Consensus       472 ----~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~  508 (536)
                          .+.+|.++++|.+++ ..+.....+.+|++||+..+.
T Consensus        95 r~~~~~~~~~~~ing~~~~-~~~~~~~~~~~g~~~~~~~lv  134 (322)
T 1e69_A           95 RELKRTGENTYYLNGSPVR-LKDIRDRFAGTGLGVDFYSIV  134 (322)
T ss_dssp             EEEETTSCEEEEETTEEEC-HHHHHHHTTTSSTTTTCCSEE
T ss_pred             EEEEcCCceEEEECCcCcc-HHHHHHHHHHcCCChhheeeE
Confidence                234578899998874 345556666788878766554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.39  E-value=4e-09  Score=104.74  Aligned_cols=65  Identities=17%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF  504 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~  504 (536)
                      .+++++++.+++|  ++|.||||+|||||+++|+|...+  |.+.++|.++... ...+.++.+++++|.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~-~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNM-YVGESERAVRQVFQR   98 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSS-TTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhh-hhhHHHHHHHHHHHH
Confidence            5899999999999  999999999999999999999876  7999999887432 122334456666665

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.38  E-value=7.9e-08  Score=98.84  Aligned_cols=77  Identities=21%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             ceeeceeE-------EEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374          435 HAIKGLWV-------NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~lsl-------~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~  506 (536)
                      ..++++.+       .+.+|++++++||||||||||+++|+|+++|+ +|.+...+.++.  .   ..+...++++|...
T Consensus       104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e--~---~~~~~~~~v~q~~~  178 (356)
T 3jvv_A          104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE--F---VHESKKCLVNQREV  178 (356)
T ss_dssp             CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC--S---CCCCSSSEEEEEEB
T ss_pred             CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH--h---hhhccccceeeeee
Confidence            34555555       67899999999999999999999999999998 566654443332  1   12334567888766


Q ss_pred             CCCCCCHHHH
Q 009374          507 LWDALSGEEH  516 (536)
Q Consensus       507 l~~~lTv~e~  516 (536)
                      ..+.+|..+-
T Consensus       179 ~~~~~~~~~~  188 (356)
T 3jvv_A          179 HRDTLGFSEA  188 (356)
T ss_dssp             TTTBSCHHHH
T ss_pred             ccccCCHHHH
Confidence            6666777663

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.37  E-value=1.6e-08  Score=103.96  Aligned_cols=76  Identities=20%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             ceeece-eEEEecCcEEEEeCCCCCchhHHHHhHcCcc--ccCc----cE-EEEcCEecCCcccHHHhhcceEEEcCCCC
Q 009374          435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTG----GD-ALIYGFSIRSSVSMTNIQKSIGVCPQFNI  506 (536)
Q Consensus       435 ~al~~l-sl~v~~gei~~LlG~NGaGKSTll~~l~g~~--~pt~----G~-i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~  506 (536)
                      ..||++ .+.+++|++++|+||||||||||++.+++..  +|++    |+ ++|++.+..       .++++++++|...
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-------~~~~i~~i~q~~~  190 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-------RPERIREIAQNRG  190 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-------CHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-------CHHHHHHHHHHcC
Confidence            467776 6899999999999999999999999999998  7777    67 899986641       1234666677665


Q ss_pred             CCCCCCHHHHHH
Q 009374          507 LWDALSGEEHLH  518 (536)
Q Consensus       507 l~~~lTv~e~L~  518 (536)
                      ++++ ++.||+.
T Consensus       191 ~~~~-~v~~ni~  201 (349)
T 1pzn_A          191 LDPD-EVLKHIY  201 (349)
T ss_dssp             CCHH-HHGGGEE
T ss_pred             CCHH-HHhhCEE
Confidence            5544 5555443

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.37  E-value=1.3e-08  Score=95.81  Aligned_cols=51  Identities=20%  Similarity=0.280  Sum_probs=45.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE--EEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA--LIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i--~i~g~~i~  486 (536)
                      .+.++.++..++|++++|+|+|||||||+.++|++.+. ..|.+  +++|.++.
T Consensus        13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            57788889899999999999999999999999999998 77988  89887763

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.34  E-value=2.5e-07  Score=105.50  Aligned_cols=30  Identities=27%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll  464 (536)
                      .+|+|+||+|++||++||+|+||||||||+
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence            479999999999999999999999999997

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.34  E-value=3.4e-08  Score=94.26  Aligned_cols=51  Identities=18%  Similarity=0.143  Sum_probs=46.0

Q ss_pred             ceeeceeE-EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       435 ~al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+||++.. .+++|++++|+|+|||||||+++.+++...+++|.+.+.+.+.
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            58999998 8999999999999999999999999999888888888766554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.32  E-value=1.7e-07  Score=90.28  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=52.5

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcC--cccc-----CccEEEEcCEecCCcccHHHhhcceEEEcC----CCCCCCCC
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTG--ITPV-----TGGDALIYGFSIRSSVSMTNIQKSIGVCPQ----FNILWDAL  511 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g--~~~p-----t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ----~~~l~~~l  511 (536)
                      .+++|++++|+|||||||||+++.+++  ..+|     ..|.+++++.+........+..+.+|+.+|    +-.+....
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   99 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF   99 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence            589999999999999999999999999  5655     678999998763212223344556777774    22222345


Q ss_pred             CHHHHH
Q 009374          512 SGEEHL  517 (536)
Q Consensus       512 Tv~e~L  517 (536)
                      +..+..
T Consensus       100 ~~~~~~  105 (243)
T 1n0w_A          100 NTDHQT  105 (243)
T ss_dssp             SHHHHH
T ss_pred             CHHHHH
Confidence            555543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.25  E-value=8.2e-08  Score=93.88  Aligned_cols=53  Identities=19%  Similarity=0.206  Sum_probs=35.4

Q ss_pred             ceEEEeee-EEEcCCCCcCccccccCCCCCcceeeceeEEEec---CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          405 VAVQIRGL-VKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK---DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       405 ~~i~~~~l-~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~---gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ..++++|+ +|.|++.              ..+|+|+||++.+   |++++|+|++||||||+.++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~--------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEE--------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCc--------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            36899999 9999322              2699999999999   9999999999999999999999854

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.23  E-value=1.2e-07  Score=107.17  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=47.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      .+++|++|+ ++|++++|+|||||||||++|+++|+..+..     .|..+.  .    -+..+|+++|   ++..+++.
T Consensus       596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-----~G~~vp--a----~~~~i~~~~~---i~~~~~~~  660 (800)
T 1wb9_A          596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-----IGSYVP--A----QKVEIGPIDR---IFTRVGAA  660 (800)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-----TTCCBS--S----SEEEECCCCE---EEEEEC--
T ss_pred             eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-----cCcccc--h----hcccceeHHH---HHhhCCHH
Confidence            589999999 9999999999999999999999999854321     122221  1    1245777766   67888888


Q ss_pred             HHHHH
Q 009374          515 EHLHL  519 (536)
Q Consensus       515 e~L~~  519 (536)
                      |++..
T Consensus       661 d~l~~  665 (800)
T 1wb9_A          661 DDLAS  665 (800)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            88754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.22  E-value=5.3e-07  Score=83.07  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=35.5

Q ss_pred             ee--eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          436 AI--KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       436 al--~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      .+  +++++++.+| +++|+|+|||||||++++|.+++.++.|
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~   55 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA   55 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence            56  7889999999 9999999999999999999998776554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.12  E-value=1.3e-07  Score=86.62  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhh-cceEEEcCCCCCCCCCCHHHHH
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ-KSIGVCPQFNILWDALSGEEHL  517 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~-~~ig~~pQ~~~l~~~lTv~e~L  517 (536)
                      .+|++++|+|+|||||||+.++|++.+    |.+.+++.++..  . ..++ ...|+.+|+...++.+++.|++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~~~   72 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--R-RNIEKMASGEPLNDDDRKPWLQALNDA   72 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--H-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--h-HHHHHhhcCcCCCccccccHHHHHHHH
Confidence            468999999999999999999999975    888999877632  1 1222 2356666654444445555554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.10  E-value=8.2e-09  Score=102.41  Aligned_cols=81  Identities=14%  Similarity=0.043  Sum_probs=59.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSG  513 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv  513 (536)
                      .+++++++.+++|  +.|+||||+||||++++|++...  .|.+.++|.++... .....++.+++++|... ..+.+++
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~i~~  137 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAPCIVF  137 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS-TTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHH-HhhHHHHHHHHHHHHHHhcCCcEEe
Confidence            5899999999999  89999999999999999999885  78999998765211 11122344666677532 4556666


Q ss_pred             HHHHHHH
Q 009374          514 EEHLHLF  520 (536)
Q Consensus       514 ~e~L~~~  520 (536)
                      .|++...
T Consensus       138 iDeid~l  144 (278)
T 1iy2_A          138 IDEIDAV  144 (278)
T ss_dssp             EETHHHH
T ss_pred             hhhhHhh
Confidence            6666544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.06  E-value=2.8e-07  Score=95.33  Aligned_cols=70  Identities=26%  Similarity=0.453  Sum_probs=51.2

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCC-CCCCCCH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNI-LWDALSG  513 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~-l~~~lTv  513 (536)
                      .+++++++++++|++++|.|||||||||++++|+|.   .+|++...+  .  ..  +..+..+|++||... ++++++.
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~--~~--~~~~~~lg~~~q~~~~l~dd~~~  227 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L--PL--DRLNFELGVAIDQFLVVFEDVKG  227 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S--CT--TTHHHHHGGGTTCSCEEETTCCC
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c--cc--hhHHHHHHHhcchhHHHHHHHHH
Confidence            589999999999999999999999999999999985   367765411  1  11  122334778888764 4555543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.03  E-value=1.2e-06  Score=78.51  Aligned_cols=46  Identities=22%  Similarity=0.312  Sum_probs=40.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc--EEEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G--~i~i~g~~i~  486 (536)
                      .+++++     +|+.++|+||||+|||||+++++|...+ +|  .+++++.++.
T Consensus        29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP   76 (149)
T ss_dssp             HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred             HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence            466666     8999999999999999999999999987 58  8888887663

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.02  E-value=2.2e-06  Score=89.85  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+++.|++++|+|+||||||||+++|+|..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            47999999999999999999999999999999983

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.01  E-value=2.5e-06  Score=97.64  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=38.1

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhH--------cCccccCcc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL--------TGITPVTGG  476 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l--------~g~~~pt~G  476 (536)
                      .+++|++|++.+|++++|+|||||||||+||++        .|..-|.++
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~  699 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES  699 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence            589999999999999999999999999999999        787766654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.99  E-value=1.4e-06  Score=99.41  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .+++|++|++++|++++|+|||||||||+||+++++
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            689999999999999999999999999999999754

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.99  E-value=3.2e-06  Score=86.85  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..++++++++.+| +++|+|||||||||++++|.+
T Consensus        15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            3678999999999 999999999999999999997

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.98  E-value=8.1e-08  Score=93.71  Aligned_cols=82  Identities=13%  Similarity=0.043  Sum_probs=59.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCC-CCCCCCCH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFN-ILWDALSG  513 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~-~l~~~lTv  513 (536)
                      .+++++++.+++|  +.|+||||+||||+++++++...  .|.+.++|.++... .....++.++.++|.. ...+.+++
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~i~~  113 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM-FVGVGAARVRDLFETAKRHAPCIVF  113 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHS-CTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHH-HhhHHHHHHHHHHHHHHhcCCeEEE
Confidence            5899999999999  89999999999999999999885  78999998765211 1112234466677753 24556666


Q ss_pred             HHHHHHHH
Q 009374          514 EEHLHLFA  521 (536)
Q Consensus       514 ~e~L~~~~  521 (536)
                      .|++...+
T Consensus       114 ~Deid~l~  121 (254)
T 1ixz_A          114 IDEIDAVG  121 (254)
T ss_dssp             EETHHHHH
T ss_pred             ehhhhhhh
Confidence            66664443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.97  E-value=2.6e-06  Score=81.86  Aligned_cols=64  Identities=16%  Similarity=0.110  Sum_probs=46.8

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC-----cccHHH----hhcceEEEcCCCCCCCC
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS-----SVSMTN----IQKSIGVCPQFNILWDA  510 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~-----~~~~~~----~~~~ig~~pQ~~~l~~~  510 (536)
                      ..++|++++|.|+|||||||++++|+|.    .|+|.+.|.+...     .....+    .++.+++++|...++..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~   88 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTM   88 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHH
Confidence            4578999999999999999999999998    7889998876521     011211    13457888886555443

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.96  E-value=4.6e-07  Score=98.27  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEE-EcCEec
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DAL-IYGFSI  485 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~-i~g~~i  485 (536)
                      .+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5789999999999999999999999999999987 674 888665

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.96  E-value=6.2e-06  Score=82.54  Aligned_cols=41  Identities=27%  Similarity=0.379  Sum_probs=35.4

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEec
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSI  485 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~i  485 (536)
                      .+|++++++|+||+||||+++.|++.+.+++| +|.+-+.|.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            47999999999999999999999999998888 666655444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.95  E-value=2.2e-06  Score=79.16  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcccc-CccEEE
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDAL  479 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p-t~G~i~  479 (536)
                      .+|++++|+|||||||||++++|.+..++ ..|.+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            36899999999999999999999998864 445554

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.95  E-value=1.8e-06  Score=81.23  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=37.8

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++|++++|.|+|||||||++++|++.+++..|.+.+.+.|.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            567899999999999999999999999999999998876654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.95  E-value=2.1e-06  Score=92.78  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc----------------------c----------------ccCcc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI----------------------T----------------PVTGG  476 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~----------------------~----------------~pt~G  476 (536)
                      ..++++++++.+| +.+|+|+|||||||++.+|.++                      +                ....+
T Consensus        49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~  127 (517)
T 4ad8_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG  127 (517)
T ss_dssp             TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCC
T ss_pred             cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCc
Confidence            3678899999999 9999999999999999999554                      3                23356


Q ss_pred             EEEEcCEecCCcccHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHh
Q 009374          477 DALIYGFSIRSSVSMTNI-QKSIGVCPQFNILWDALSGEEHLHLFANI  523 (536)
Q Consensus       477 ~i~i~g~~i~~~~~~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~l  523 (536)
                      ++++||..+.. .+..++ ...+.+.+|++.+... ...++..+....
T Consensus       128 ~~~ing~~v~~-~~l~~~~~~li~i~~q~~~~~l~-~~~~rr~~LD~~  173 (517)
T 4ad8_A          128 AARLSGEVVSV-RELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRR  173 (517)
T ss_dssp             EEESSSSBCCH-HHHHHHHTTTEEEESGGGGGTTT-SHHHHHHHHHTS
T ss_pred             EEEECCEECCH-HHHHHHhhhheEEeCCchHHhcC-CHHHHHHHHHHH
Confidence            78899987742 223333 4568999999876653 556666665443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.94  E-value=8.1e-07  Score=84.72  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=47.7

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc---ccCccEEEE--------cCEecCCcccHHHhhcceEEEcCCC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDALI--------YGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~---~pt~G~i~i--------~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      .+.+++|+|++||||||+.++|++.+   .++.|++..        +|.++........+++.+|+.+|..
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            35789999999999999999999876   788899887        6776642234456778899998863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.91  E-value=3.6e-06  Score=87.78  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             eeece-eEEEecCcEEEEeCCCCCchhHHHH--hHcCccccCcc-----EEEEcCEecCCcccHHHhhcceEEEcC
Q 009374          436 AIKGL-WVNIAKDQLFCLLGPNGAGKTTTIS--CLTGITPVTGG-----DALIYGFSIRSSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       436 al~~l-sl~v~~gei~~LlG~NGaGKSTll~--~l~g~~~pt~G-----~i~i~g~~i~~~~~~~~~~~~ig~~pQ  503 (536)
                      .||.+ .=.+++|+++.|.|+||+|||||++  ++.+..+++.|     .+++++.+.........+.+++|+.+|
T Consensus       166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~  241 (400)
T 3lda_A          166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD  241 (400)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred             hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence            45543 2479999999999999999999999  45677777555     899998764222223445566787776

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.89  E-value=1.7e-06  Score=79.58  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=32.0

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~  477 (536)
                      +.+++|+.++|.||||+|||||++++++...|.+|.
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            445679999999999999999999999999877774

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.88  E-value=3.2e-06  Score=85.05  Aligned_cols=47  Identities=23%  Similarity=0.235  Sum_probs=42.6

Q ss_pred             eeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       440 lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +++...+|++++++|+||+||||++..|++.+.++.|+|.+.+.|..
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            45667889999999999999999999999999999999999888874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.84  E-value=7.6e-06  Score=75.91  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=32.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcccc-----------CccEEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPV-----------TGGDALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~p-----------t~G~i~i~g~~i  485 (536)
                      .++|+|+||||||||++.++|...+           ++|++.++|.++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            5799999999999999999998765           578999999764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=5.8e-06  Score=77.44  Aligned_cols=37  Identities=24%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus        13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5999999999999999999999999999999999765

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.82  E-value=1.8e-06  Score=87.23  Aligned_cols=48  Identities=13%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             ceeeceeEEEecCc------EEEEeCCCCCchhHHHHhHcCccc--cCccEEEEcC
Q 009374          435 HAIKGLWVNIAKDQ------LFCLLGPNGAGKTTTISCLTGITP--VTGGDALIYG  482 (536)
Q Consensus       435 ~al~~lsl~v~~ge------i~~LlG~NGaGKSTll~~l~g~~~--pt~G~i~i~g  482 (536)
                      .++++++..+.+++      ++||.|+|||||||++++|.+++.  |++|.+.+-+
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~  129 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT  129 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence            57888888888877      999999999999999999999987  5677755433

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.81  E-value=4.9e-06  Score=83.26  Aligned_cols=47  Identities=26%  Similarity=0.297  Sum_probs=43.7

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++++++  +|++++++|+||+||||+...|+|.+.+..|++.+.+.|..
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence            677887  99999999999999999999999999999999999998875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.78  E-value=6.8e-06  Score=77.15  Aligned_cols=42  Identities=17%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccc-------------cCccEEEEcCEec
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP-------------VTGGDALIYGFSI  485 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~-------------pt~G~i~i~g~~i  485 (536)
                      +...+|++++|+||||||||||++.|.+..+             |..|+  ++|.+.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y   68 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY   68 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence            3445899999999999999999999998875             56666  566553

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.78  E-value=9.2e-06  Score=76.75  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=27.4

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      ++|++++|+|||||||||++++|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999999876

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.77  E-value=9.4e-06  Score=85.51  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=29.5

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      +++.+|++++|+|||||||||++++|+++..++++
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~   55 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN   55 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence            45678999999999999999999999999888653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.76  E-value=3.3e-06  Score=86.27  Aligned_cols=51  Identities=14%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .+++++++.+.+|.+++++|+|||||||+++.|+|...+..|++.+-+.|.
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            588999999999999999999999999999999999998888888877665

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.73  E-value=5.3e-06  Score=91.33  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=55.6

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCc-cEEEEcCEecCCcccHHHhhcceEEEcCCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDALIYGFSIRSSVSMTNIQKSIGVCPQFN  505 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~-G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~  505 (536)
                      .+++++++.+.+|+.+.|+||||+||||+.++|+|+.+++. |.+.+++.+..      .....+++|||..
T Consensus        48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~------~~~p~i~~~p~g~  113 (604)
T 3k1j_A           48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED------ENMPRIKTVPACQ  113 (604)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC------TTSCEEEEEETTH
T ss_pred             hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc------ccCCcEEEEecch
Confidence            68999999999999999999999999999999999999888 88888876542      2345688888753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.73  E-value=1.2e-05  Score=82.79  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=31.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..++++++++.+| +++|+|||||||||++++|+.
T Consensus        12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999 899999999999999999983

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.67  E-value=2.1e-05  Score=73.25  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc-----cC------ccEEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP-----VT------GGDALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~-----pt------~G~i~i~g~~i  485 (536)
                      .++|+|+||||||||++.++|...     |+      .|++.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            479999999999999999999842     43      67899999754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.65  E-value=9.8e-06  Score=76.46  Aligned_cols=48  Identities=21%  Similarity=0.091  Sum_probs=40.8

Q ss_pred             ceeeceeE-EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..||++.. .+++|++++|.|+|||||||+++.+++  .+..+.+++++.+
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~   55 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG   55 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence            57888876 899999999999999999999999999  5555667777654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.63  E-value=6.3e-06  Score=79.20  Aligned_cols=50  Identities=16%  Similarity=0.086  Sum_probs=38.1

Q ss_pred             ceeece-eEEEecCcEEEEeCCCCCchhHHH-HhHcCccccCccEEEEcCEe
Q 009374          435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTI-SCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~l-sl~v~~gei~~LlG~NGaGKSTll-~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..||++ .-.+++|+++.|.|+|||||||+. +++.+..+...+.+++.+..
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            467776 678999999999999999999995 45555555555666666543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.61  E-value=1.3e-05  Score=81.54  Aligned_cols=55  Identities=25%  Similarity=0.179  Sum_probs=33.8

Q ss_pred             EEEeCCCCCchhHHHHhHcC-ccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCC
Q 009374          450 FCLLGPNGAGKTTTISCLTG-ITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNIL  507 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g-~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l  507 (536)
                      +.|.||||+||||++++++| +..|+.|++.++|.+...   ....+..+++++|.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~---~~~~~~~~~~~~~~~~~   94 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT---ASNRKLELNVVSSPYHL   94 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc---cccccceeeeecccceE
Confidence            78999999999999999999 889999999999987632   11225678899987654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.58  E-value=2e-05  Score=80.78  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=37.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +++.+++|+|++|||||||++.|+|...+++|+|.+.+.|..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            356899999999999999999999999999999988887653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.54  E-value=2.4e-05  Score=80.07  Aligned_cols=83  Identities=20%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             eeeceeE--EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE-EEcCEecCCcccHHHhhcceEEEcCCCCCCCCCC
Q 009374          436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALS  512 (536)
Q Consensus       436 al~~lsl--~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lT  512 (536)
                      .||.+-=  .+++|+++.|.||+|+|||||+..+++...+..|.+ ++++....   +. ...+++|+.+|+..+....+
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~-~ra~rlgv~~~~l~i~~~~~  123 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DP-VYAKNLGVDLKSLLISQPDH  123 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CH-HHHHHHTCCGGGCEEECCSS
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---ch-HHHHHcCCchhhhhhhhccC
Confidence            4555433  699999999999999999999999999988877865 77775542   11 23456888888877777788


Q ss_pred             HHHHHHHHHH
Q 009374          513 GEEHLHLFAN  522 (536)
Q Consensus       513 v~e~L~~~~~  522 (536)
                      +.+.+.....
T Consensus       124 ~e~~l~~~~~  133 (356)
T 3hr8_A          124 GEQALEIVDE  133 (356)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887766543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.54  E-value=3.8e-05  Score=72.07  Aligned_cols=33  Identities=27%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             eeEEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       440 lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +-=++++|++++|.|++||||||+.++|++.++
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            334577899999999999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.53  E-value=1.2e-05  Score=87.43  Aligned_cols=68  Identities=22%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQF  504 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~  504 (536)
                      .+++++++++ +|++++|+||||+||||+.++|++...+..|++.+.|..... ......++.+|..+|.
T Consensus        97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~-~~~g~~~~~ig~~~~~  164 (543)
T 3m6a_A           97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES-EIRGHRRTYVGAMPGR  164 (543)
T ss_dssp             HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------------C
T ss_pred             HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh-hhhhHHHHHhccCchH
Confidence            5788888888 899999999999999999999999999999999887743210 0111223456666553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.48  E-value=2.5e-05  Score=84.45  Aligned_cols=43  Identities=21%  Similarity=0.153  Sum_probs=37.1

Q ss_pred             eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE--EEEcCEe
Q 009374          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD--ALIYGFS  484 (536)
Q Consensus       441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~--i~i~g~~  484 (536)
                      +..+++|++++|.|+||||||||+++++|..+|+ |+  +++.+++
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee  319 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE  319 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence            4499999999999999999999999999999886 65  5666644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.43  E-value=6.1e-05  Score=79.49  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc------------cCccEEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~------------pt~G~i~i~g~~i  485 (536)
                      .++|+|+||+|||||++.|+|...            +.+|.+.++|.++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            689999999999999999999853            6779999999864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.38  E-value=5.2e-05  Score=68.73  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .|++++|+|+|||||||+.++|++.+.+    ..+++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4788999999999999999999998754    45554

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.37  E-value=9.6e-05  Score=66.02  Aligned_cols=30  Identities=20%  Similarity=0.444  Sum_probs=24.0

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      ++.++++.+ .+++|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~-g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence            344455554 499999999999999999987

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.33  E-value=5.3e-06  Score=84.45  Aligned_cols=68  Identities=18%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             ceeeceeEEEecCcE--EEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEc
Q 009374          435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCP  502 (536)
Q Consensus       435 ~al~~lsl~v~~gei--~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~p  502 (536)
                      .+++.++..+++|++  +.+.||+|+||||+++++++.+.+..+++.+.+.+..+....+.+|+.++..+
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~  101 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA  101 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence            588999999999999  99999999999999999999988777665444444322223344454444333

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.33  E-value=7.3e-05  Score=68.43  Aligned_cols=40  Identities=30%  Similarity=0.262  Sum_probs=33.2

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCcc--EEEEcCEec
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI  485 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G--~i~i~g~~i  485 (536)
                      ++|++++|.|++||||||+.++|++.+++ .|  .+.++|..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            46899999999999999999999998876 56  666676544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.29  E-value=7.4e-05  Score=78.26  Aligned_cols=48  Identities=25%  Similarity=0.290  Sum_probs=43.4

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCC
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRS  487 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~  487 (536)
                      ++++++  ++++++++|+||+||||+...|++.+.+..|++.+.+.|+..
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            567777  899999999999999999999999999999999998888743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.29  E-value=8.6e-05  Score=73.96  Aligned_cols=56  Identities=20%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL  519 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~  519 (536)
                      ++.++||.|++||||||+.+.|.+++.+. |      .         . ++.+.+++|++.+++. +.++++.+
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~-~~~~~iv~~D~f~~~~-~~~~~l~~   85 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------G-EKSIGYASIDDFYLTH-EDQLKLNE   85 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------G-GSCEEEEEGGGGBCCH-HHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------C-CceEEEeccccccCCh-HHHHHHhc
Confidence            56899999999999999999999999864 2      0         0 3345555888877764 66677655

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.29  E-value=5.8e-05  Score=75.45  Aligned_cols=48  Identities=23%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             ec-eeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          438 KG-LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       438 ~~-lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++ ++++.+ |++++++|+||+||||++..|++.+.+..|++.+.+.|..
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            45 777766 9999999999999999999999999999899999888764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.24  E-value=0.00012  Score=72.07  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=27.8

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+++|++++|+|+|||||||+++.+++...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            588999999999999999999999998665

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.20  E-value=5.9e-05  Score=83.80  Aligned_cols=62  Identities=21%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             eEEEecCcEEEEeCCCCCchhHHHHhHcCcccc--CccEEEEcCEecCCcccHHHhhcceEEEcCC
Q 009374          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQF  504 (536)
Q Consensus       441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p--t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~  504 (536)
                      ++.+++++.++|+||+|+|||||++.|++...+  +.|+| .+|..+.+ ....+.++.+++.+|.
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d-~~~~e~~~giti~~~~   66 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTD-YTPEAKLHRTTVRTGV   66 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSC-CSHHHHHTTSCCSCEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccccc-CCHHHHhcCCeEEecc
Confidence            456788999999999999999999999977654  67887 67766543 2233445566666654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.11  E-value=0.00012  Score=69.08  Aligned_cols=44  Identities=18%  Similarity=0.093  Sum_probs=38.8

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc--EEEEcCEec
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG--DALIYGFSI  485 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G--~i~i~g~~i  485 (536)
                      +.+++|.++.|.|++||||||+.+.|++.+.|..|  .+.++|.++
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            45678999999999999999999999999988888  888887554

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.06  E-value=0.00022  Score=68.41  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=32.5

Q ss_pred             ceeeceeEEEe---cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374          435 HAIKGLWVNIA---KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (536)
Q Consensus       435 ~al~~lsl~v~---~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~  481 (536)
                      .-+.++++.+.   +|.++++.|++||||||+.+.|+..+.+ .+.+...
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            35666777666   8999999999999999999999999887 6676543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.03  E-value=0.0004  Score=71.42  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc-----------cCccEEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~-----------pt~G~i~i~g~~i  485 (536)
                      +++|+|++|||||||++.|+|...           |+.|++.++|.++
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            489999999999999999999876           6779999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.03  E-value=0.00035  Score=64.36  Aligned_cols=49  Identities=22%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--------cccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--------~~pt~G~i~i~g~~  484 (536)
                      .+++++++..++. .++++|++|+||||+++.+++-        ..++.+++.++|..
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~   68 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK   68 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence            4889999998887 5589999999999999999972        33445677777754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.99  E-value=0.00019  Score=66.77  Aligned_cols=49  Identities=24%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc--------cccCccEEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~--------~~pt~G~i~i~g~~  484 (536)
                      .+++++++..+++. ++++|++|+|||||++.+++-        ..++.+++.++|..
T Consensus        14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A           14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            48899999888876 589999999999999999973        33456778887754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.97  E-value=0.00052  Score=62.20  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcccc------------CccEEEEcCEe
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPV------------TGGDALIYGFS  484 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~p------------t~G~i~i~g~~  484 (536)
                      +|..++|+|++|+|||||++.++|...+            ..+.+.++|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   53 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP   53 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence            5778999999999999999999986421            13667777754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.94  E-value=0.00031  Score=65.68  Aligned_cols=29  Identities=34%  Similarity=0.489  Sum_probs=24.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      ++||+|+|||||||+.++|+++     |...+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~   32 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA   32 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence            6899999999999999999983     5555554

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.94  E-value=0.00016  Score=74.27  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceee--------------ceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK--------------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~--------------~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .+.++||+..|+..+              ..++              |+.+.+.+||..+|+|++|+||||++++|++..
T Consensus       133 ri~Fe~ltp~yP~er--------------~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSR--------------LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSB--------------CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCc--------------cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            367889999998642              3666              899999999999999999999999999999876


Q ss_pred             c
Q 009374          472 P  472 (536)
Q Consensus       472 ~  472 (536)
                      .
T Consensus       199 ~  199 (422)
T 3ice_A          199 A  199 (422)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.91  E-value=0.00027  Score=72.49  Aligned_cols=43  Identities=21%  Similarity=0.488  Sum_probs=33.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC--ccccCccEEEE
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALI  480 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g--~~~pt~G~i~i  480 (536)
                      .+|++++++++   .++++|++||||||+++.|+|  .+++.+|.++-
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~   69 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR   69 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence            58999999998   899999999999999999999  55677676643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.88  E-value=0.0003  Score=64.64  Aligned_cols=41  Identities=29%  Similarity=0.339  Sum_probs=34.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEE-EEcCE
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYGF  483 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g~  483 (536)
                      ...+|.++.|.|++||||||+.+.|++.+.+..|.+ .+++.
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            345789999999999999999999999988777766 45543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.87  E-value=0.00054  Score=64.33  Aligned_cols=29  Identities=21%  Similarity=0.459  Sum_probs=23.3

Q ss_pred             ceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      +.++++.+ .+++|.|||||||||++.+|.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            34455544 599999999999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.84  E-value=0.00015  Score=74.44  Aligned_cols=51  Identities=22%  Similarity=0.212  Sum_probs=35.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~  477 (536)
                      .+.+.+|.+.|+++               .+.++.+|.|      +|+|++|+|||||++.|.|...+..|.
T Consensus        17 ~v~~~~l~~~~~~k---------------~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           17 YVGFANLPNQVHRK---------------SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             ----CCHHHHHHTH---------------HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             eEEeccchHHhCCe---------------eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            47778888877532               5788898887      999999999999999998876554443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.81  E-value=0.00032  Score=74.99  Aligned_cols=48  Identities=23%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      .+++++++.+++|  +.|.||||+|||||+++|++...  .|.+.++|.++.
T Consensus        54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~  101 (499)
T 2dhr_A           54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  101 (499)
T ss_dssp             GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred             hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence            4788899999999  89999999999999999999875  688999987763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.80  E-value=0.00082  Score=61.17  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=27.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc-----------ccCccEEEEcCEe
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT-----------PVTGGDALIYGFS  484 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~-----------~pt~G~i~i~g~~  484 (536)
                      .++|+|++|+|||||++.++|..           .+..|.+.++|..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~   55 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK   55 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence            47899999999999999999842           2345666666654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.79  E-value=0.00058  Score=69.38  Aligned_cols=30  Identities=20%  Similarity=0.444  Sum_probs=23.5

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      ++..+++.+ .+++|+|||||||||++.+|+
T Consensus        15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             cCeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence            344555544 599999999999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.77  E-value=0.00057  Score=70.76  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCc-----------cccCccEEEEcC
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGI-----------TPVTGGDALIYG  482 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~-----------~~pt~G~i~i~g  482 (536)
                      +..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.|
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            456778999999999999999999998           667888887765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.73  E-value=0.0013  Score=58.96  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.69  E-value=0.00051  Score=70.17  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             eeeceeE--EEecCcEEEEeCCCCCchhHHHHhHcCccccCccE-EEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCC
Q 009374          436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALS  512 (536)
Q Consensus       436 al~~lsl--~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~-i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lT  512 (536)
                      .||.+-=  .+++|+++.|.|+||+||||+...++.......|. ++++....   .+. ...+.+|+-+|+-.+.+..|
T Consensus        48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~---~~~-~~a~~lG~~~~~l~i~~~~~  123 (349)
T 2zr9_A           48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA---LDP-EYAKKLGVDTDSLLVSQPDT  123 (349)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC---CCH-HHHHHTTCCGGGCEEECCSS
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC---cCH-HHHHHcCCCHHHeEEecCCC
Confidence            4555432  68999999999999999999988887665444444 55655432   111 22345677777655566668


Q ss_pred             HHHHHHHHHHh
Q 009374          513 GEEHLHLFANI  523 (536)
Q Consensus       513 v~e~L~~~~~l  523 (536)
                      +.+.+.....+
T Consensus       124 ~e~~l~~~~~l  134 (349)
T 2zr9_A          124 GEQALEIADML  134 (349)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88777665433

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.60  E-value=0.00067  Score=67.78  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=23.9

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++..++|+|++|+|||||++.|+|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            455689999999999999999999974

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.46  E-value=0.00086  Score=62.66  Aligned_cols=30  Identities=30%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+.+|.+++|.||+||||||+.+.|...++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            367889999999999999999999987663

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.39  E-value=0.0014  Score=60.19  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=26.1

Q ss_pred             ceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++|+...+|.+++|.|+.||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            46788889999999999999999999999765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.38  E-value=0.0012  Score=69.32  Aligned_cols=41  Identities=24%  Similarity=0.232  Sum_probs=36.8

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++.+++++|+||+||||++..|++.+.+..++|.+-+.|+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            57899999999999999999999999999899988777753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.35  E-value=0.0012  Score=61.34  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      +++|.|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999998

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.34  E-value=0.0016  Score=59.71  Aligned_cols=37  Identities=22%  Similarity=0.126  Sum_probs=29.6

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEe
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFS  484 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~  484 (536)
                      .++++.|++||||||+++.|.+.+++.   -|.+..++++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            688999999999999999999987654   3677766544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.32  E-value=0.00093  Score=62.17  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=28.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ..+++|.|++||||||+.+.|++.+    |...+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4589999999999999999998875    5556665544

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.23  E-value=0.00048  Score=70.14  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             ceeeceeEEEecCcE--EEEeCCCCCchhHHHHhHcCccc
Q 009374          435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       435 ~al~~lsl~v~~gei--~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+++.+++.+++|+.  ++|+|++||||||+.++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            478889999999999  99999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.16  E-value=0.0024  Score=58.21  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|++|+|||||++.++|..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999999963

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.05  E-value=0.0025  Score=58.14  Aligned_cols=25  Identities=44%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .+|.+++|.|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999983

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.99  E-value=0.0033  Score=60.10  Aligned_cols=27  Identities=33%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      ++|+|++|+|||||++.|+|...+.+|
T Consensus        32 i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           32 IVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            689999999999999999997765544

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.97  E-value=0.0033  Score=64.58  Aligned_cols=32  Identities=19%  Similarity=0.429  Sum_probs=26.7

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .+++..+++.+ .++.|.|+|||||||++..|.
T Consensus        15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            34667777655 699999999999999999986

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.93  E-value=0.0013  Score=63.17  Aligned_cols=58  Identities=16%  Similarity=0.261  Sum_probs=37.8

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHc---CccccCccEEE--------EcCEecCCcccHHHhhcceEEEcC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDAL--------IYGFSIRSSVSMTNIQKSIGVCPQ  503 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~i~--------i~g~~i~~~~~~~~~~~~ig~~pQ  503 (536)
                      +.-+++|.||+||||||+.+.|+   |....+.|.++        -.|.+..+.....+..+.+.+.++
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~   76 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVG   76 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEe
Confidence            44589999999999999999999   66566666652        345544322223344455566554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.92  E-value=0.0019  Score=62.57  Aligned_cols=41  Identities=29%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ...++.++.|.|++||||||+.+.|+..+.  .|.+.++|..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            345678999999999999999999998764  35677777654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.92  E-value=0.0031  Score=60.31  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      -.+|.+++|.|++||||||+.++|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999986

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.79  E-value=0.0058  Score=55.49  Aligned_cols=36  Identities=36%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc----ccCcc----EEEEcCEe
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS  484 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~----~pt~G----~i~i~g~~  484 (536)
                      .++++|++|+|||||++.+++..    .||.|    ++.+++..
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~   61 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK   61 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence            47899999999999999999873    57777    55566543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.73  E-value=0.0038  Score=60.28  Aligned_cols=44  Identities=30%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ++++...++|  +.|.||+|+||||+.+.+++.....  -+.+++.++
T Consensus        38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~   81 (257)
T 1lv7_A           38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF   81 (257)
T ss_dssp             -----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred             HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence            3334444444  7899999999999999999976532  477777665

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.72  E-value=0.0055  Score=62.66  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=29.7

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcC-----------ccccCccEEEEcC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTG-----------ITPVTGGDALIYG  482 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g-----------~~~pt~G~i~i~g  482 (536)
                      |-.++|+|.+|+|||||++.|+|           ...|+.|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34679999999999999999998           3457778887765

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.71  E-value=0.0039  Score=66.68  Aligned_cols=48  Identities=13%  Similarity=0.190  Sum_probs=40.7

Q ss_pred             ceeEEEecCcEEEEeCCCCCchhHHHHhHcC--ccccCccEEEEcCEecC
Q 009374          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDALIYGFSIR  486 (536)
Q Consensus       439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g--~~~pt~G~i~i~g~~i~  486 (536)
                      .+++++.++..+.+.|.+||||||+++.|..  +..++.|++.+.+.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            3678888999999999999999999999876  56777788888877763

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.58  E-value=0.0018  Score=68.47  Aligned_cols=50  Identities=10%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEe
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFS  484 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~  484 (536)
                      ..||++...+++|+++.|.|++|+||||++..+++...+..| .|.+.+.+
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            589999989999999999999999999999999998876555 56555444

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.44  E-value=0.012  Score=53.56  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=27.4

Q ss_pred             EEEeCCCCCchhHHHHhHc-Cc----cccCcc----EEEEcCEec
Q 009374          450 FCLLGPNGAGKTTTISCLT-GI----TPVTGG----DALIYGFSI  485 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~-g~----~~pt~G----~i~i~g~~i  485 (536)
                      ++++|+.|+|||||++.++ +.    ..||.|    .+.++|..+
T Consensus        23 i~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   67 (184)
T 3ihw_A           23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY   67 (184)
T ss_dssp             EEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence            6899999999999997554 43    567777    677777543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.44  E-value=0.0053  Score=63.41  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~  481 (536)
                      .+.-+.++|++||||||+++.+.+...+..+.+.+-
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~   69 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII   69 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence            566789999999999999999999888888888774

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.38  E-value=0.0089  Score=67.63  Aligned_cols=30  Identities=30%  Similarity=0.612  Sum_probs=28.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll  464 (536)
                      +=|+|||++|++|+++++.|.+|||||||.
T Consensus        24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            359999999999999999999999999986

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.32  E-value=0.0062  Score=59.50  Aligned_cols=24  Identities=38%  Similarity=0.591  Sum_probs=21.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .++|+|++|+|||||++.|+|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999999754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.07  E-value=0.01  Score=52.97  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++|.|+.||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.02  E-value=0.0043  Score=57.82  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=24.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      ++++.|++||||||+.+.|...+.+...++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v   31 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            678999999999999999998776543333

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.88  E-value=0.013  Score=55.00  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++-+++|.|++||||||+.++|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.87  E-value=0.011  Score=54.04  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=23.3

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++.++.|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467789999999999999999997643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=94.84  E-value=0.014  Score=66.59  Aligned_cols=30  Identities=33%  Similarity=0.590  Sum_probs=28.0

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll  464 (536)
                      +=|+|||++|++++++++.|.+|||||||.
T Consensus        32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            359999999999999999999999999984

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.71  E-value=0.01  Score=58.86  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=32.6

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .+.++..+.|.||+|+||||+.+++++...  .+-+.+++.+
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~   84 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE   84 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHH
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHH
Confidence            456778899999999999999999999764  4667777644

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.70  E-value=0.016  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.663  Sum_probs=22.8

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      |.++.|.|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56889999999999999999987653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.68  E-value=0.015  Score=52.75  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      |.++.|.|+.||||||+.+.|+-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.68  E-value=0.012  Score=53.38  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=23.4

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVT  474 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt  474 (536)
                      .++++.|++||||||++..|.+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            478999999999999999999877643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.67  E-value=0.016  Score=51.56  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=18.1

Q ss_pred             EEEEeCCCCCchhHHHHhH
Q 009374          449 LFCLLGPNGAGKTTTISCL  467 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l  467 (536)
                      +++|.|+.||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999999999

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.65  E-value=0.015  Score=57.37  Aligned_cols=35  Identities=31%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      ++.++.|.|++||||||+.+.|....+  .|.+.|++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            356889999999999999999976542  35667765

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=94.59  E-value=0.013  Score=66.94  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHH-H--------------------hHcCccccCccE-------EEEcCEecC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI-S--------------------CLTGITPVTGGD-------ALIYGFSIR  486 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll-~--------------------~l~g~~~pt~G~-------i~i~g~~i~  486 (536)
                      +=|+|||++|++++++++.|++|||||||. .                    -|..+.+|+=..       |-|+-+...
T Consensus        12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLafdtl~aegqrry~es~s~y~r~~l~~~~~p~vd~i~gl~pai~i~q~~~~   91 (916)
T 3pih_A           12 HNLKNITVRIPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYARQFLGNLKKPDVDEIEGLSPAIAIDQKTVS   91 (916)
T ss_dssp             TTCCSBCCEEETTSEEEEEESTTSSSHHHHTTTHHHHHHHHHHTTSCCC--------CCCSCSEEETCCCEEEECSCC-C
T ss_pred             cccCcceeccCCCcEEEEECCCCCcHHHHHHHHHHHHHHHHHHHhccHHHHHhcccCCCCCcCeecCCCceEEEEecCCC
Confidence            469999999999999999999999999985 1                    233344554433       334332221


Q ss_pred             ----C----cccH----HH--hhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          487 ----S----SVSM----TN--IQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       487 ----~----~~~~----~~--~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                          +    .+++    +-  .|-..-+||....-....|+.+-+....
T Consensus        92 ~n~rstvgt~tei~~~lrll~ar~g~~~cp~~~~~~~~~~~~~~~~~~~  140 (916)
T 3pih_A           92 HNPRSTVGTVTEIYDYLRVLYARIGKAHCPECGRPLEKKSIDEILQDLF  140 (916)
T ss_dssp             CSTTCBHHHHTTHHHHHHHHHHHSCEEBCTTTCCBCBCCCHHHHHHHHH
T ss_pred             CCCCCCceeHHHHHHHHHHHHHhcCCcCCCCCCCCcccCCHHHHHHHHH
Confidence                1    0111    11  1223448999888888888877665543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.53  E-value=0.017  Score=53.15  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=24.1

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .+|-+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999998766

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.47  E-value=0.015  Score=53.46  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=24.6

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .+++|.|+.||||||+.+.|+..     |-..++.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            57899999999999999999875     5555544

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.46  E-value=0.014  Score=55.63  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=23.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .+.+|+.+.+.|++||||||++..+..
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            356899999999999999998877654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.40  E-value=0.018  Score=53.12  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=18.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.|.||+||||||+++.|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            579999999999999998643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.39  E-value=0.019  Score=56.36  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|++|+|||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999964

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.34  E-value=0.015  Score=59.03  Aligned_cols=49  Identities=20%  Similarity=0.089  Sum_probs=36.5

Q ss_pred             eeecee-EEEecCcEEEEeCCCCCchhHHHHhHcCc--ccc-----CccEEEEcCEe
Q 009374          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPV-----TGGDALIYGFS  484 (536)
Q Consensus       436 al~~ls-l~v~~gei~~LlG~NGaGKSTll~~l~g~--~~p-----t~G~i~i~g~~  484 (536)
                      .||.+- =.+++|+++.|.|++|+||||+...++..  .++     ..+.++++...
T Consensus       110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            344432 36899999999999999999999988875  322     34567887654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.27  E-value=0.026  Score=54.77  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|..|+|||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999974

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.27  E-value=0.023  Score=57.85  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .-.++++|++|+|||||++.|+|..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999975

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.27  E-value=0.02  Score=52.52  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            57899999999999999999843

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.25  E-value=0.03  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|..|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3689999999999999999865

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.24  E-value=0.032  Score=49.18  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999873

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.22  E-value=0.04  Score=55.06  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..+++..+.+ .|.-+.+.|++|+||||+...|.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            5788888888 889999999999999999988876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.20  E-value=0.017  Score=52.26  Aligned_cols=24  Identities=33%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .++.++.|.|+.||||||+.+.|+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            356788999999999999999998

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.18  E-value=0.0087  Score=63.06  Aligned_cols=45  Identities=24%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i  480 (536)
                      .++|.+ ..+-+|+..+|.|++|+|||||+++|++......|.+.+
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            477777 778899999999999999999999998876654455544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=94.18  E-value=0.019  Score=55.55  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++.|.|++||||||+-+.|++..
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            67899999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.17  E-value=0.024  Score=49.92  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+.+..
T Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.11  E-value=0.021  Score=56.38  Aligned_cols=35  Identities=31%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEE-EEcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA-LIYG  482 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i-~i~g  482 (536)
                      ..+.|.||+|+||||+.+++++...++.|.+ .++.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~   83 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   83 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence            5789999999999999999999988777754 4443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.09  E-value=0.023  Score=50.01  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.++|..
T Consensus         5 i~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEECCCCCCHHHHHHHHcCcc
Confidence            6899999999999999999854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.00  E-value=0.021  Score=51.94  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++.+++..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.00  E-value=0.027  Score=51.07  Aligned_cols=25  Identities=40%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.++.|.|+.||||||+-+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999997543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=93.96  E-value=0.024  Score=58.14  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++|+|++|+|||||++.|+|.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999985

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.95  E-value=0.028  Score=51.95  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      +|.+++|.|+.||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999876654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.94  E-value=0.026  Score=52.33  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .+|.+++|.|+.||||||+.+.|+..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.94  E-value=0.02  Score=51.34  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=19.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      .++++|++|+|||||++.+++
T Consensus        20 ~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           20 RILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999985

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.94  E-value=0.022  Score=51.37  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++.|.|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            57899999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.91  E-value=0.022  Score=52.08  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++.+++|.|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            46778999999999999999999754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.89  E-value=0.028  Score=50.49  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4688999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.84  E-value=0.028  Score=52.16  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=23.9

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|-+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.84  E-value=0.03  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+.+..
T Consensus        12 i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           12 LLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998853

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.80  E-value=0.028  Score=49.84  Aligned_cols=22  Identities=41%  Similarity=0.596  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.++|..
T Consensus         7 i~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCccHHHHHHHHhcCC
Confidence            6899999999999999998864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=93.77  E-value=0.02  Score=57.56  Aligned_cols=49  Identities=24%  Similarity=0.239  Sum_probs=36.3

Q ss_pred             eeecee-EEEecCcEEEEeCCCCCchhHHHHhHcCcc-cc------CccEEEEcCEe
Q 009374          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGIT-PV------TGGDALIYGFS  484 (536)
Q Consensus       436 al~~ls-l~v~~gei~~LlG~NGaGKSTll~~l~g~~-~p------t~G~i~i~g~~  484 (536)
                      .||.+- =.+++|+++.|.|++|+||||+...++... .+      ..+.++++...
T Consensus        95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A           95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            444432 368999999999999999999998887643 33      34567777654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=93.76  E-value=0.031  Score=50.82  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.+++|.|+.||||||+.+.|+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.64  E-value=0.027  Score=49.49  Aligned_cols=21  Identities=19%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+.
T Consensus         8 i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            689999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.57  E-value=0.033  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus         5 i~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCCCHHHHHHHHHhcc
Confidence            6899999999999999997643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.57  E-value=0.028  Score=51.02  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++.+.+..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.56  E-value=0.037  Score=56.21  Aligned_cols=35  Identities=34%  Similarity=0.349  Sum_probs=28.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCc--cEEEEcCE
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTG--GDALIYGF  483 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~--G~i~i~g~  483 (536)
                      .+.|.||+|+||||+++.+++...+..  .-++++..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~   82 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF   82 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence            789999999999999999999887652  45666643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.56  E-value=0.026  Score=49.26  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+.
T Consensus         6 i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.51  E-value=0.029  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+||||+++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.49  E-value=0.023  Score=57.51  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=30.7

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccC----ccEEEEcCE
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDALIYGF  483 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt----~G~i~i~g~  483 (536)
                      .+++.+.|.||+|+||||+++.+++...+.    ...+++++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~   85 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR   85 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence            346788999999999999999999987653    345666654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.48  E-value=0.03  Score=48.91  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+.+..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.48  E-value=0.041  Score=48.99  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .-.++++|+.|+||||+++.+++.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345789999999999999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.47  E-value=0.03  Score=49.02  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+.
T Consensus         7 i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.46  E-value=0.029  Score=50.63  Aligned_cols=26  Identities=31%  Similarity=0.457  Sum_probs=17.9

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++.++.|.|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999997543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=93.44  E-value=0.016  Score=61.44  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=29.2

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .++++++.+++|  +.|.||+|+||||+.+++++...
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence            566667777777  77999999999999999998653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.44  E-value=0.031  Score=50.57  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.+.|..
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            47899999999999999998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.35  E-value=0.034  Score=51.27  Aligned_cols=23  Identities=17%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++|.|++||||||+.++|++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78999999999999999998743

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=93.34  E-value=0.037  Score=54.97  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++|+|++|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.33  E-value=0.033  Score=48.89  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+-
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.31  E-value=0.035  Score=50.27  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCccc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++++|+.|+|||||++.+.|...
T Consensus        17 i~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhcc
Confidence            58999999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.29  E-value=0.041  Score=49.55  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+++..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCcC
Confidence            6899999999999999998864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.28  E-value=0.033  Score=53.64  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|||||||++.|+|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.27  E-value=0.033  Score=49.07  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+.
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            689999999999999999865

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.23  E-value=0.034  Score=49.57  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            37899999999999999887653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.22  E-value=0.031  Score=49.78  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.21  E-value=0.029  Score=51.38  Aligned_cols=28  Identities=25%  Similarity=0.368  Sum_probs=23.7

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.++.+++|.|+.||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467789999999999999999997643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.21  E-value=0.042  Score=48.26  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+.+..
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999987643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.20  E-value=0.032  Score=49.13  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+.+..
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            6899999999999999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.17  E-value=0.035  Score=49.35  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+.+-
T Consensus        10 i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=93.13  E-value=0.039  Score=53.82  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|+.|+|||||++.|.|.-
T Consensus        11 I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           11 LMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999987753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.11  E-value=0.062  Score=49.68  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        29 i~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            689999999999999988753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.10  E-value=0.037  Score=48.60  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=19.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+++-
T Consensus         9 i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999863

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.04  E-value=0.052  Score=48.97  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+++.
T Consensus        10 i~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            589999999999999999875

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.01  E-value=0.038  Score=50.15  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+++.
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           28 VVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            589999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=92.99  E-value=0.042  Score=49.78  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++.|.|+.||||||+.+.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.98  E-value=0.039  Score=49.59  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+.+..
T Consensus         7 i~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6899999999999999998643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=92.98  E-value=0.043  Score=53.20  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999954

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=92.93  E-value=0.045  Score=51.59  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++.++.|.|+.||||||+.+.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34578899999999999999999743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=92.93  E-value=0.039  Score=49.98  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        10 i~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A           10 TVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999886

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.92  E-value=0.066  Score=47.87  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      -++++|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            368999999999999999983

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=92.91  E-value=0.052  Score=50.84  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +|-.+.|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999997643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.87  E-value=0.046  Score=48.60  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=19.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++-.
T Consensus         9 i~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            9 IVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEECcCCCCHHHHHHHHHhCc
Confidence            6899999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.86  E-value=0.042  Score=49.50  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=92.82  E-value=0.042  Score=53.70  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|+|||||++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.81  E-value=0.043  Score=48.38  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.81  E-value=0.054  Score=48.31  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      |+++|.|+.||||||+-+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.81  E-value=0.054  Score=48.77  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++.+++-.
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998743

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=92.80  E-value=0.053  Score=49.89  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      ..+.|.||+|+||||+++.++.........+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            5678999999999999999998776544443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.76  E-value=0.045  Score=47.99  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=18.5

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|+.|+||||+++.+.+
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            68999999999999999975

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.73  E-value=0.045  Score=48.82  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            36899999999999999997643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=92.69  E-value=0.053  Score=52.75  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=22.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      ..++++|.+|+||||+++.|.|......|
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~  128 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG  128 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence            57899999999999999999997654333

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=92.69  E-value=0.046  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+.+..
T Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           18 YIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=92.64  E-value=0.057  Score=52.25  Aligned_cols=26  Identities=35%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++.++.|.|+.||||||+.+.|+..+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.61  E-value=0.047  Score=49.36  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+||||+++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            3689999999999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=92.60  E-value=0.05  Score=49.30  Aligned_cols=23  Identities=35%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.+++..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36899999999999999999865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.56  E-value=0.048  Score=48.77  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        21 i~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            689999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.55  E-value=0.058  Score=50.22  Aligned_cols=22  Identities=32%  Similarity=0.376  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=92.55  E-value=0.061  Score=48.99  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=18.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999999754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=92.52  E-value=0.059  Score=48.88  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.47  E-value=0.049  Score=49.89  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            36899999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.46  E-value=0.05  Score=50.52  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.+++..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=92.43  E-value=0.06  Score=56.38  Aligned_cols=39  Identities=26%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ++.++.+.|++|+||||+...|+..+....-++.+-..|
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D  137 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD  137 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            467899999999999999999998776554455443333

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=92.41  E-value=0.057  Score=47.90  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        17 i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           17 LVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=92.40  E-value=0.033  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.|+|..
T Consensus        31 ~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=92.38  E-value=0.056  Score=50.61  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=23.9

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      ++..+.|.||+|+||||+.+.++.....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678899999999999999999876543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.36  E-value=0.069  Score=49.15  Aligned_cols=24  Identities=42%  Similarity=0.479  Sum_probs=21.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +-+++|.|+.||||||+.+.|+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.36  E-value=0.052  Score=49.59  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+-
T Consensus        17 i~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           17 VIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.34  E-value=0.065  Score=49.34  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..+++|.|+.||||||+.+.|+.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=92.34  E-value=0.053  Score=48.34  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+||||+++.+.+..
T Consensus        15 i~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=92.33  E-value=0.063  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.5

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ..++++|+.|+|||||++.|.|..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            467999999999999999999863

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.30  E-value=0.052  Score=50.57  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++.|++..
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.27  E-value=0.055  Score=52.35  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.|+|..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999999865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.27  E-value=0.055  Score=48.39  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      -++++|+.|+|||||++.+++
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999988874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.25  E-value=0.067  Score=47.89  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+-
T Consensus        21 i~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            579999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.23  E-value=0.064  Score=49.05  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           11 ILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.23  E-value=0.05  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+++-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            3789999999999999999873

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.23  E-value=0.067  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+.+..
T Consensus        19 i~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           19 LLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            6899999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.21  E-value=0.056  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           25 LLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999998654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=92.18  E-value=0.068  Score=49.76  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=92.17  E-value=0.071  Score=48.37  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+|||||++.+++-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999984

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=92.16  E-value=0.066  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ..+++|.|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.16  E-value=0.057  Score=50.64  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +..+.|.|+.||||||+.+.|+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.15  E-value=0.063  Score=48.17  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=19.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=92.10  E-value=0.073  Score=47.22  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=20.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=92.10  E-value=0.072  Score=50.04  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.+++..
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999863

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=92.10  E-value=0.072  Score=49.41  Aligned_cols=22  Identities=41%  Similarity=0.664  Sum_probs=19.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus        14 i~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           14 ICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999999643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.09  E-value=0.06  Score=47.99  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++|.|+.||||||+.+.|+..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.06  E-value=0.062  Score=51.14  Aligned_cols=29  Identities=28%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +.+|-++.+.|+.||||||+.+.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999987664

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=92.06  E-value=0.058  Score=53.37  Aligned_cols=23  Identities=17%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.||||||+++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999975

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=92.03  E-value=0.069  Score=48.77  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|..|+|||||++.+.+-.
T Consensus        23 i~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           23 ILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            6799999999999999999854

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.00  E-value=0.065  Score=48.36  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=25.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc----ccCcc----EEEEcCEe
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS  484 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~----~pt~G----~i~i~g~~  484 (536)
                      .++++|+.|+||||+++.+++-.    .||-|    ++.+++..
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~   61 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR   61 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEE
Confidence            46899999999999999998532    34433    55555543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.98  E-value=0.066  Score=49.17  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           28 FLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            689999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.94  E-value=0.057  Score=49.12  Aligned_cols=21  Identities=33%  Similarity=0.684  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        26 i~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           26 VCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            689999999999999999764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.92  E-value=0.058  Score=49.48  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=20.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+++..
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            36899999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.91  E-value=0.064  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      -++|+|.+|+|||||++.++|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999986

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.91  E-value=0.065  Score=47.82  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+||||+++.+.+-.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.91  E-value=0.065  Score=48.64  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+.+..
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999998643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.88  E-value=0.088  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+++.
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.74  E-value=0.068  Score=48.33  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+-
T Consensus        23 i~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           23 IIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.74  E-value=0.1  Score=47.24  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc-----cccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G~  477 (536)
                      ++++|+.|+|||||++.+.+-     ..||-|.
T Consensus        24 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~   56 (187)
T 3c5c_A           24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLED   56 (187)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred             EEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence            689999999999999888653     3456553

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.73  E-value=0.063  Score=48.73  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            5899999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.73  E-value=0.062  Score=49.34  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.72  E-value=0.064  Score=48.19  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=25.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc----ccCcc----EEEEcCEe
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT----PVTGG----DALIYGFS  484 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~----~pt~G----~i~i~g~~  484 (536)
                      ++++|+.|+||||+++.+.+-.    .||-|    ++.++|..
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~   66 (181)
T 2h17_A           24 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTR   66 (181)
T ss_dssp             EEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEE
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEE
Confidence            5899999999999999998742    34444    35555543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=91.71  E-value=0.084  Score=48.77  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .-++||.|..||||||+-++|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=91.70  E-value=0.07  Score=48.33  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+-
T Consensus        25 i~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999999863

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.69  E-value=0.09  Score=49.42  Aligned_cols=29  Identities=31%  Similarity=0.392  Sum_probs=24.8

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      .+|.++.+.|+.||||||..+.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            36889999999999999999999876653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.67  E-value=0.071  Score=48.15  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+++.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4689999999999999999865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=91.62  E-value=0.085  Score=49.67  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .+.|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.61  E-value=0.071  Score=48.56  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+++-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=91.59  E-value=0.072  Score=48.17  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .+++|.|+.||||||+-+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.58  E-value=0.088  Score=47.80  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+++-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.58  E-value=0.073  Score=48.67  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+++..
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            36899999999999999998653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=91.57  E-value=0.047  Score=57.15  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      .+++++|++|+||||+...|++.+.....++.+-..|
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            5889999999999999999999887554456554444

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.53  E-value=0.087  Score=48.08  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+||||+++.+.+-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.51  E-value=0.086  Score=48.80  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|+.|+|||||++.+++..
T Consensus        28 i~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           28 LLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            6899999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=91.49  E-value=0.061  Score=53.14  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++-++||-|+.||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.43  E-value=0.089  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=91.43  E-value=0.096  Score=50.12  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      +-+++|.|+.||||||+.+.|+.
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999974

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.35  E-value=0.063  Score=48.10  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=8.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+++..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36899999999999999998653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.35  E-value=0.096  Score=48.36  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+|||||++.+++-
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.33  E-value=0.08  Score=48.69  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=91.30  E-value=0.082  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+|||||++.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.30  E-value=0.084  Score=49.04  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+++-
T Consensus        37 i~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            689999999999999999874

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.22  E-value=0.063  Score=47.84  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+++-
T Consensus        10 i~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A           10 LGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.13  E-value=0.095  Score=51.32  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++..+.|.||+|+||||+.+.+++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            35677899999999999999999865

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=91.12  E-value=0.084  Score=51.67  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|..|+|||||++.|+|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            47899999999999999999975

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=91.05  E-value=0.11  Score=49.84  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      +|.++.+.|+.||||||+.+.|...+..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999877654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.03  E-value=0.1  Score=50.00  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -+++|.|+.||||||+-+.|...+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999997643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.02  E-value=0.08  Score=48.79  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.90  E-value=0.088  Score=47.52  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+||||+++.+.+-
T Consensus        24 ~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999753

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=90.89  E-value=0.11  Score=48.82  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      +|.++.+-|+.||||||..+.|...+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4788999999999999999999887654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=90.88  E-value=0.063  Score=60.47  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=27.0

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCccccCc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~  475 (536)
                      +..|+.+.+.|||||||||++.++.+...+..
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~  137 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPH  137 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            56789999999999999999999877655544

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.83  E-value=0.11  Score=47.93  Aligned_cols=29  Identities=24%  Similarity=0.121  Sum_probs=21.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcC-----ccccCccE
Q 009374          449 LFCLLGPNGAGKTTTISCLTG-----ITPVTGGD  477 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g-----~~~pt~G~  477 (536)
                      .++++|+.|+||||+++.+++     ...|+.|.
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~   65 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD   65 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc
Confidence            368999999999999977663     34455554

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=90.81  E-value=0.11  Score=49.05  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=26.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      .+|..+.+.|+.||||||..+.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46889999999999999999999987765

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=90.76  E-value=0.059  Score=54.46  Aligned_cols=47  Identities=11%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIY  481 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~  481 (536)
                      ..||.+.-.+++|+++.|.|++|+||||+...++.......+.|.+-
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f   80 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF   80 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            57888887899999999999999999999988877655445555443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=90.75  E-value=0.1  Score=54.81  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|++|+|||||++.|+|..
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999999854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.74  E-value=0.11  Score=48.56  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      |-.+.|.|+.||||||+.+.|+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999999754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=90.61  E-value=0.11  Score=48.30  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=18.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++|.|+.||||||+.+.|+-.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=90.56  E-value=0.11  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcC
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .-+++|.|+.||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999983

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.52  E-value=0.12  Score=47.46  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+||||+++.+++-
T Consensus        28 i~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999874

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=90.51  E-value=0.061  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=3.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+.
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999998876

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.48  E-value=0.097  Score=47.44  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+||||+++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.48  E-value=0.12  Score=48.28  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++|+|..|+|||||++.++|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=90.26  E-value=0.092  Score=52.28  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVT  474 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt  474 (536)
                      ..+.|.||+|+||||+++.+++.....
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            456789999999999999999877544

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=90.18  E-value=0.16  Score=51.15  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=23.5

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++.++.|+||.|+||||+-..|+..+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            456899999999999999999998763

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=90.18  E-value=0.11  Score=48.34  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++-+++-.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=90.17  E-value=0.13  Score=52.16  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=22.6

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .-+++|+|+.|+||||+++.|++.+.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999987654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=90.16  E-value=0.048  Score=50.76  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=26.6

Q ss_pred             eeeceeEEEecCc---EEEEeCCCCCchhHHHHhHcCccc
Q 009374          436 AIKGLWVNIAKDQ---LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       436 al~~lsl~v~~ge---i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +++.+.-.+..|+   .+.|.||.|+||||+++.++....
T Consensus        31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3333333344454   789999999999999999986553

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.16  E-value=0.21  Score=46.44  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=27.5

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ..+++.-+.+ .|..+.|.||+|+|||||...|+..
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3566655554 5788999999999999998888654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.16  E-value=0.15  Score=48.15  Aligned_cols=26  Identities=42%  Similarity=0.438  Sum_probs=21.7

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++..+.|.|+.||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999997543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=90.06  E-value=0.16  Score=48.15  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      .+|.++.+-|+.||||||+.+.|...+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35788999999999999999999876654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=90.00  E-value=0.082  Score=52.78  Aligned_cols=36  Identities=8%  Similarity=0.033  Sum_probs=31.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ..||++.-.+++|+++.|.|++|+||||+...++..
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            578888878999999999999999999998877644

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.95  E-value=0.12  Score=48.14  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.+++..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            36899999999999999998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=89.89  E-value=0.17  Score=45.06  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=22.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +..+.|.|+.|+||||+.+.++....
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999987653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.86  E-value=0.12  Score=47.53  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+.
T Consensus        32 i~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhhC
Confidence            689999999999999999764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=89.85  E-value=0.14  Score=47.74  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.+++|.|+.||||||+.+.|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.77  E-value=0.054  Score=54.28  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             eeeceeEEEecC--cEEEEeCCCCCchhHHHHhHcCccc
Q 009374          436 AIKGLWVNIAKD--QLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       436 al~~lsl~v~~g--ei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +++.+.-.+..|  ..+.|.||+|+||||+.+.+++.+.
T Consensus        45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            444444445555  3488999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=89.76  E-value=0.17  Score=52.58  Aligned_cols=35  Identities=23%  Similarity=0.181  Sum_probs=26.6

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      .+.+++.|.|++||||||+.+.|+..+    |-..++..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D  290 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRD  290 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccc
Confidence            456789999999999999999987643    44444443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=89.73  E-value=0.18  Score=49.57  Aligned_cols=25  Identities=24%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      -.++++|.+|+||||++|.|+|...
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCce
Confidence            3579999999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=89.73  E-value=0.15  Score=49.95  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999985

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=89.70  E-value=0.16  Score=51.72  Aligned_cols=49  Identities=16%  Similarity=0.140  Sum_probs=35.9

Q ss_pred             ceeecee--EEEecCcEEEEeCCCCCchhHHHHhHcCccccC-ccEEEEcCE
Q 009374          435 HAIKGLW--VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDALIYGF  483 (536)
Q Consensus       435 ~al~~ls--l~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt-~G~i~i~g~  483 (536)
                      ..||.+-  =.+++|+++.|.|++|+||||+...++...... ...++++..
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3566652  259999999999999999999988777654333 335667664

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=89.56  E-value=0.071  Score=48.76  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+++..
T Consensus        36 i~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           36 LLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999998854

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=89.56  E-value=0.15  Score=49.11  Aligned_cols=27  Identities=22%  Similarity=0.319  Sum_probs=23.4

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++-+++|.|+.||||||+.+.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            466789999999999999999998766

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=89.56  E-value=0.14  Score=48.33  Aligned_cols=26  Identities=35%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++..++.|+||.||||+|.-+.|+-.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            44568889999999999999888743

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=89.46  E-value=0.17  Score=46.24  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             cCcEEEEeCCCCCchhHHH-HhH
Q 009374          446 KDQLFCLLGPNGAGKTTTI-SCL  467 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll-~~l  467 (536)
                      +|.+..+.|+.|+||||++ +++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999997 554

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=89.43  E-value=0.16  Score=46.77  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999999754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=89.42  E-value=0.18  Score=50.26  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.++.|.||+|+||||+...|+-..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=89.35  E-value=0.15  Score=52.78  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|..++|||||++.|+|..
T Consensus         3 I~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=89.31  E-value=0.17  Score=47.98  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.3

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +|.++++-|..||||||+.+.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            35678999999999999999998655

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.29  E-value=0.17  Score=50.97  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+++|.||+||||||+-+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4789999999999999999987654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=89.20  E-value=0.19  Score=49.96  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             eeecee-EEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       436 al~~ls-l~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .||.+- =.+++|+++.|.|++|+||||+...++.
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            444443 3689999999999999999999987774

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=89.16  E-value=0.16  Score=47.27  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=22.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc-----ccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT-----PVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~-----~pt~G~  477 (536)
                      ++++|..|+|||||++.+++-.     .||-|.
T Consensus        30 i~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~   62 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE   62 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence            6799999999999999987642     455554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=88.81  E-value=0.24  Score=50.08  Aligned_cols=45  Identities=16%  Similarity=0.084  Sum_probs=33.2

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc-----------ccCccEEEEcC
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT-----------PVTGGDALIYG  482 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~-----------~pt~G~i~i~g  482 (536)
                      +.+.++++----++|+|..+||||||++.|++-.           .|+-|.+.+++
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~  204 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD  204 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence            4555666555568999999999999999999753           34556666654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=88.66  E-value=0.19  Score=48.71  Aligned_cols=28  Identities=29%  Similarity=0.352  Sum_probs=23.6

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .++..+.|.||.|+||||+.+.++....
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4456688999999999999999988753

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=88.42  E-value=0.22  Score=51.42  Aligned_cols=22  Identities=36%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+|||||++.|+|.
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4689999999999999999984

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=88.40  E-value=0.35  Score=43.88  Aligned_cols=34  Identities=12%  Similarity=0.116  Sum_probs=25.3

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..++..-+. -.|.-+.+.|++|+||||+...|..
T Consensus         5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            345555544 4578899999999999998776643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.32  E-value=0.22  Score=49.86  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++.|.||+||||||+-+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478899999999999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=88.25  E-value=0.21  Score=52.07  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|+|||||++.|+|..
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999853

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=88.17  E-value=0.2  Score=50.69  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|..|+||||+++.|+|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=88.16  E-value=0.18  Score=52.88  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +..+.|.||+|+|||||++++++...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999998763

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=88.03  E-value=0.21  Score=44.42  Aligned_cols=27  Identities=30%  Similarity=0.257  Sum_probs=22.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      +..+.|.||.|+||||+.+.++.....
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            345679999999999999999876643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=88.00  E-value=0.16  Score=47.21  Aligned_cols=27  Identities=44%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             EEEeCCCCCchhHHHHh-HcCc----cccCcc
Q 009374          450 FCLLGPNGAGKTTTISC-LTGI----TPVTGG  476 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~-l~g~----~~pt~G  476 (536)
                      ++++|+.|+|||||++. +.|.    ..|+.|
T Consensus        18 i~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~   49 (221)
T 3gj0_A           18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG   49 (221)
T ss_dssp             EEEEECTTSSHHHHHTTBHHHHHTCEEETTTT
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCCCCccc
Confidence            68999999999999998 5554    345555

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.79  E-value=0.097  Score=47.98  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++++|+.|+|||||++.+.+-
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            3689999999999999888753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=87.60  E-value=0.28  Score=46.69  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ...+.|.||.|+||||+.+.++...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3456799999999999999998754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=87.57  E-value=0.29  Score=48.74  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++.|.||+|+||||+...|+...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            478999999999999999998654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=87.46  E-value=0.29  Score=45.54  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=22.3

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      |..+++=|.-||||||..+.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            45678889999999999999988664

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=87.43  E-value=0.29  Score=45.68  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=18.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++.|+||.||||+|.-+.|+-.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999998888754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=87.07  E-value=0.31  Score=49.93  Aligned_cols=37  Identities=30%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc-----------cCccEEEEcCEec
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP-----------VTGGDALIYGFSI  485 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~-----------pt~G~i~i~g~~i  485 (536)
                      -+||+|..-+|||||+|.|+|--.           |..|.+.+.|..+
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i  121 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI  121 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence            489999999999999999999642           3457778877653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=87.03  E-value=0.37  Score=45.30  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=25.9

Q ss_pred             eeeceeE-EEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       436 al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .||.+-= .+++|+++.|-|+.|+||||+.--++
T Consensus        18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4555432 69999999999999999999975443

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=86.99  E-value=0.34  Score=47.97  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++|+|..|+||||+++.+.+-
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999997765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=86.87  E-value=0.24  Score=50.55  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.8

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++..++++|..|+|||||+|.|.|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4667899999999999999999987

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=86.82  E-value=0.3  Score=52.02  Aligned_cols=26  Identities=38%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +..+++++|++|+|||||.+.|+..+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999544

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=86.77  E-value=0.3  Score=46.44  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      -+||+|+.||||||.-+.|+-
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHH
Confidence            479999999999999998854

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=86.63  E-value=0.22  Score=52.46  Aligned_cols=24  Identities=13%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      |=.++|+|+.|+|||||++.|+|.
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            344899999999999999999885

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=86.61  E-value=0.25  Score=49.78  Aligned_cols=38  Identities=18%  Similarity=0.086  Sum_probs=28.4

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCcccc-------CccEEEEcCE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPV-------TGGDALIYGF  483 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~p-------t~G~i~i~g~  483 (536)
                      .+..+.|.||.|+||||+++.+......       ...-++++..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            3467889999999999999999987643       2334566654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=86.60  E-value=0.18  Score=50.45  Aligned_cols=74  Identities=16%  Similarity=0.107  Sum_probs=42.2

Q ss_pred             EEecCcEEEEeCCCCCchhHH-HHhHcCcccc--CccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHH-HH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTT-ISCLTGITPV--TGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEH-LH  518 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTl-l~~l~g~~~p--t~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~-L~  518 (536)
                      .+++| ++-|-||.|+||||| +.+++...+.  ..--++|++..-.   +... .+++|+-+++-.+...-++++- +.
T Consensus        25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~---~~~r-a~~lGvd~d~llv~~~~~~E~~~l~   99 (333)
T 3io5_A           25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI---TPAY-LRSMGVDPERVIHTPVQSLEQLRID   99 (333)
T ss_dssp             CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC---CHHH-HHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred             CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh---hHHH-HHHhCCCHHHeEEEcCCCHHHHHHH
Confidence            47889 899999999999999 4555444432  2234677775431   1122 2345554443333334456554 55


Q ss_pred             HHH
Q 009374          519 LFA  521 (536)
Q Consensus       519 ~~~  521 (536)
                      ...
T Consensus       100 i~~  102 (333)
T 3io5_A          100 MVN  102 (333)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=86.50  E-value=0.28  Score=52.86  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -.++++|..|+|||||++.|.|..
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=86.37  E-value=0.1  Score=50.18  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|.||.|+||||+.+.++...
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            5688999999999999998753

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=86.08  E-value=0.35  Score=49.93  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++||.++|||||++.|+|.
T Consensus        12 ~I~iiG~~~~GKSTLi~~L~g~   33 (410)
T 1kk1_A           12 NIGMVGHVDHGKTTLTKALTGV   33 (410)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999975

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=85.93  E-value=0.26  Score=50.31  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++..++++|..|+||||++|.|.|.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5677899999999999999999986

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=85.78  E-value=0.35  Score=52.50  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -+++++|+.|+|||||+|.|+|..
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCC
Confidence            568999999999999999999964

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=85.64  E-value=0.21  Score=52.27  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=33.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcccc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      ..||.+.-.+++|+++.|.|++|+||||+...++.....
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~  226 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL  226 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            578888877999999999999999999998888876544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=85.61  E-value=0.36  Score=50.36  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.++|..
T Consensus       177 ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          177 QFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=85.32  E-value=0.39  Score=50.51  Aligned_cols=35  Identities=29%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|. =+.+-+||..+|.|+.|.|||||+.+++.-.
T Consensus       143 ~ID~-l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          143 VVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             HHHH-HSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             EEec-ccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence            4443 3678999999999999999999999887754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=85.25  E-value=0.36  Score=48.32  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|+|||||++.+++-.
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~~~  189 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKLGE  189 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCSSC
T ss_pred             eEEEECCCCccHHHHHHHHhCCC
Confidence            47899999999999999998753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=85.01  E-value=0.46  Score=45.27  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .-++.+.|.-|+||||+++.|+..+.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            35778999999999999999986554

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=84.96  E-value=0.37  Score=52.23  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=27.9

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALI  480 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i  480 (536)
                      .+.++.|.|+.|+||||+++.+..........|.+
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~  237 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL  237 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            46899999999999999999998876544444544

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=84.96  E-value=0.41  Score=49.37  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .+++|.||+|+||||+...|+-.+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            468899999999999999988654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=84.87  E-value=0.35  Score=51.14  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|+|||||++.|+|..
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~~  257 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQE  257 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999873

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=84.80  E-value=0.36  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+|||||++.|++.
T Consensus        13 ~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A           13 NVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHhh
Confidence            4799999999999999999873

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=84.60  E-value=0.46  Score=49.02  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.++|||||++.|+|..
T Consensus        10 ~I~iiG~~d~GKSTLi~~L~g~~   32 (408)
T 1s0u_A           10 NIGMVGHVDHGKTSLTKALTGVW   32 (408)
T ss_dssp             EEEEESCTTSSHHHHHHHHHSCC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            47899999999999999999753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=84.57  E-value=0.42  Score=51.21  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|..|+|||||++.++|-.
T Consensus        44 V~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           44 VHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEESSSCSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999999864

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=84.51  E-value=0.45  Score=48.81  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             ceeEEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       439 ~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      |.=+.+-+||-.+|+|+.|+||||++.+|+.-..
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~  200 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA  200 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence            3446789999999999999999999998887543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=84.48  E-value=0.41  Score=41.53  Aligned_cols=39  Identities=21%  Similarity=0.275  Sum_probs=27.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +.-+-|.|+.|+|||++.+.|........+...++...+
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~   62 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP   62 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence            344679999999999999999887644333322544433

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=84.17  E-value=0.4  Score=49.31  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++|+.|+|||||++.|++.
T Consensus         5 ~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            5 NVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHhCh
Confidence            4799999999999999999884

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=83.92  E-value=0.26  Score=52.18  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc------------cCccEEEEcCEe
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP------------VTGGDALIYGFS  484 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~------------pt~G~i~i~g~~  484 (536)
                      |=.++|+|+.|+|||||++.|+|...            +..+.+.++|.+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~  292 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL  292 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE
Confidence            33579999999999999999998632            224667777764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=83.89  E-value=0.5  Score=43.02  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|.||.|+||||+.+.++...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999988654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=83.73  E-value=0.59  Score=46.99  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=30.0

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +|..+-|.||.|+||||+.+.++.........+.+++..
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  107 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE  107 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence            456788999999999999999998876544555555433

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=83.70  E-value=0.34  Score=50.81  Aligned_cols=31  Identities=32%  Similarity=0.513  Sum_probs=24.5

Q ss_pred             EecCcE--EEEeCCCCCchhHHHHhHcCccccC
Q 009374          444 IAKDQL--FCLLGPNGAGKTTTISCLTGITPVT  474 (536)
Q Consensus       444 v~~gei--~~LlG~NGaGKSTll~~l~g~~~pt  474 (536)
                      +..|++  +.|.||.|+||||+.+.|+......
T Consensus        45 i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~   77 (447)
T 3pvs_A           45 IEAGHLHSMILWGPPGTGKTTLAEVIARYANAD   77 (447)
T ss_dssp             HHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             HHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            334443  7899999999999999999876543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=83.43  E-value=0.6  Score=46.25  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++-+.|.||.|+|||+|+++++....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57888999999999999999988665

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=83.22  E-value=0.53  Score=47.99  Aligned_cols=48  Identities=23%  Similarity=0.322  Sum_probs=33.1

Q ss_pred             ceeeceeE--EEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcC
Q 009374          435 HAIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYG  482 (536)
Q Consensus       435 ~al~~lsl--~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g  482 (536)
                      ..||.+-=  .+++|+++.|.|+.|+||||+...++.......+ -++++.
T Consensus        60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~  110 (366)
T 1xp8_A           60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA  110 (366)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence            35555432  6899999999999999999998766654332233 345544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=83.22  E-value=0.44  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g  469 (536)
                      -.++++|+.|+|||||++.|++
T Consensus        14 ~~I~IiG~~~aGKTTL~~~Ll~   35 (529)
T 2h5e_A           14 RTFAIISHPDAGKTTITEKVLL   35 (529)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHh
Confidence            4679999999999999999975

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=83.22  E-value=0.53  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.431  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++++|+.|+||||+++.|+|..
T Consensus        71 ~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           71 RLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=83.15  E-value=0.57  Score=48.86  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=26.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc----c--------CccEEEEcCEe
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP----V--------TGGDALIYGFS  484 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~----p--------t~G~i~i~g~~  484 (536)
                      .++|+|..++|||||++.|+|-..    +        ..|.+.++|..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~   50 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT   50 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence            478999999999999999998632    1        23566777764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=83.14  E-value=0.49  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++++||.|+|||||++.|.|.
T Consensus         7 ~V~IvGh~d~GKTTLl~~L~~~   28 (594)
T 1g7s_A            7 IVSVLGHVDHGKTTLLDHIRGS   28 (594)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999999864

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=83.04  E-value=0.72  Score=46.10  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=27.7

Q ss_pred             eeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       437 l~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +|.+--.+++|.++.|.||.|+||||+...++..
T Consensus       113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4443357899999999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	536
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-17
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	7e-17
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-14
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-14
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	8e-14
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-13
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-12
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	9e-12
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-11
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-11
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-11
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-11
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-10
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	4e-10
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	8e-10
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-09
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-09
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-09
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-08
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-08
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-04

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           AV ++ L K                      +KG+   I + ++F L+GPNGAGKTTT+ 
Sbjct: 2   AVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLR 46

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG 525
            ++ +   + G   ++G ++        ++K I   P+    +  + G E+L   A    
Sbjct: 47  IISTLIKPSSGIVTVFGKNVV--EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 104

Query: 526 LPLDSIK 532
                I+
Sbjct: 105 SSSSEIE 111

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 77.9 bits (192), Expect = 7e-17
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 18/128 (14%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V V++  L K F                   A+  L + I   +   LLGP+G GKTTT+
Sbjct: 5   VEVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTL 49

Query: 465 SCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524
             + G+   T G         R    +    ++I +  Q   +W  ++  E++     IK
Sbjct: 50  RMIAGLEEPTEGRIYFGD---RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 106

Query: 525 GLPLDSIK 532
             P D I 
Sbjct: 107 KFPKDEID 114

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + K F            Q T    A+  + +++   Q++ ++G +GAGK+T I C
Sbjct: 2   IKLSNITKVFH-----------QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 50

Query: 467 LTGITPVTGGDALIYGFSI--RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524
           +  +   T G  L+ G  +   S   +T  ++ IG+  Q   L  + +   ++ L   + 
Sbjct: 51  VNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 110

Query: 525 GLPLDSIK 532
             P D +K
Sbjct: 111 NTPKDEVK 118

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 68.8 bits (168), Expect = 5e-14
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             ++ + + I K  +    GPNG GKTT +  ++       G+ +  G      V +T +
Sbjct: 15  PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG------VPITKV 68

Query: 495 QKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD 529
           +  I   P+  I+   +S E++L   A++ G+ ++
Sbjct: 69  KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 103

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.8 bits (168), Expect = 8e-14
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           VQ++ + K +                     K + ++I + +    +GP+G GK+T +  
Sbjct: 1   VQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRM 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           + G+  +T GD  I    +         ++ +G+  Q   L+  LS  E++     + G 
Sbjct: 46  IAGLETITSGDLFIGEKRMN---DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 102

Query: 527 PLDSIK 532
             + I 
Sbjct: 103 KKEVIN 108

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 67.0 bits (163), Expect = 4e-13
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 15/130 (11%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V + ++ + K F   +               A+  + +NI   + F +LGP+GAGKTT +
Sbjct: 2   VRIIVKNVSKVFKKGKV-------------VALDNVNINIENGERFGILGPSGAGKTTFM 48

Query: 465 SCLTGITPVTGGDALIYGFSIR--SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522
             + G+   + G+       +     + +    + IG+  Q   L+  L+  E++     
Sbjct: 49  RIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108

Query: 523 IKGLPLDSIK 532
              +  + I+
Sbjct: 109 NMKMSKEEIR 118

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 15/118 (12%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   +VK F                   A+ G+ +++ K  +  ++GPNG+GK+T I+ 
Sbjct: 5   LRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINV 49

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIK 524
           +TG      G        I +          I    Q       ++  E+L +     
Sbjct: 50  ITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP 107

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 63.0 bits (153), Expect = 9e-12
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            V++  + K F                   A++ + + +   +   LLGP+G GKTTT+ 
Sbjct: 3   GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLR 47

Query: 466 CLTGITPVTGGDALIYGFSI---RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFAN 522
            + G+   + G   I    +      + +    + I +  Q   L+  ++  +++     
Sbjct: 48  MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107

Query: 523 IKGLPLDSIK 532
           ++ +P   I 
Sbjct: 108 LRKVPRQEID 117

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 28/139 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + +  L K + G                  +KG+ +      +  ++G +G+GK+T + C
Sbjct: 3   LHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRC 47

Query: 467 LTGITPVTGGDALIYGFSI------------RSSVSMTNIQKSIGVCPQFNILWDALSGE 514
           +  +   + G  ++ G +I                 +  ++  + +  Q   LW  ++  
Sbjct: 48  INFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL 107

Query: 515 EHLHLFA-NIKGLPLDSIK 532
           E++      + GL     +
Sbjct: 108 ENVMEAPIQVLGLSKHDAR 126

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           ++ ++++ L   +                  HAIKG+ + + + Q+  L+G NGAGKTTT
Sbjct: 4   DIVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTT 48

Query: 464 ISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523
           +S + G+     G  +  G  I +  +    +  I + P+   ++  L+  E+L + A  
Sbjct: 49  LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108

Query: 524 KG 525
           + 
Sbjct: 109 RK 110

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + KT+                  +A+K + +NI + +   ++GP+G+GK+T ++ 
Sbjct: 2   IKLKNVTKTYK-----------MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNI 50

Query: 467 LTGITPVTGGDALIYGFSIRS---SVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANI 523
           +  +   T G+  I                 +  IG   Q   L   L+  E++ L    
Sbjct: 51  IGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF 110

Query: 524 KGLPLDSIK 532
           K     S +
Sbjct: 111 KYRGAMSGE 119

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 19/121 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I  L + +                   ++  L + +   + F +LGP GAGKT  +  
Sbjct: 2   IEIESLSRKWKN----------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLEL 45

Query: 467 LTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGL 526
           + G      G  L+ G   +    ++  +  I    Q   L+  ++ +++L     +K +
Sbjct: 46  IAGFHVPDSGRILLDG---KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102

Query: 527 P 527
            
Sbjct: 103 K 103

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             +  L   +   ++  L+GPNGAGK+T ++ + G+T    G     G  +  + S T +
Sbjct: 13  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLE-AWSATKL 70

Query: 495 QKSIGVCPQFNILWDALSGEEHLHLFANIK 524
                   Q      A     +L L  + K
Sbjct: 71  ALHRAYLSQQQTPPFATPVWHYLTLHQHDK 100

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 400 IPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           I      + I  +   +                    +K + ++I K +    +G +G G
Sbjct: 10  IEIKQGRIDIDHVSFQYNDNEA-------------PILKDINLSIEKGETVAFVGMSGGG 56

Query: 460 KTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD 509
           K+T I+ +     VT G  LI G +I+      +++  IG+  Q NIL+ 
Sbjct: 57  KSTLINLIPRFYDVTSGQILIDGHNIK-DFLTGSLRNQIGLVQQDNILFS 105

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNI 494
             ++ +      + +    GP+G GK+T  S L      T G+  I G  I  ++S+ N 
Sbjct: 16  QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID-NISLENW 74

Query: 495 QKSIGVCPQFNILWDALSGE 514
           +  IG   Q + +      E
Sbjct: 75  RSQIGFVSQDSAIMAGTIRE 94

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            VQ + +   +P    +              ++GL   +   ++  L+GPNG+GK+T  +
Sbjct: 11  LVQFQDVSFAYPNRPDV------------LVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 58

Query: 466 CLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWD 509
            L  +   TGG  L+ G  +        + + +    Q   ++ 
Sbjct: 59  LLQNLYQPTGGQLLLDGKPLP-QYEHRYLHRQVAAVGQEPQVFG 101

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 16/136 (11%)

Query: 400 IPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           I      ++ R +  T+PG                 A++ + + I   +   L+G +G+G
Sbjct: 7   IDRATGDLEFRNVTFTYPGREV-------------PALRNINLKIPAGKTVALVGRSGSG 53

Query: 460 KTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHL 519
           K+T  S +T    +  G  L+ G  +R   ++ +++  + +  Q   L++          
Sbjct: 54  KSTIASLITRFYDIDEGHILMDGHDLR-EYTLASLRNQVALVSQNVHLFNDTVANN--IA 110

Query: 520 FANIKGLPLDSIKSVC 535
           +A  +    + I+   
Sbjct: 111 YARTEEYSREQIEEAA 126

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +K + +NI K ++  + G  G+GKT+ +  + G    + G     G             
Sbjct: 51  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97

Query: 496 KSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVCA 536
             +  C QF+ +    + +E++    +       S+   C 
Sbjct: 98  -RVSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQ 136

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 442 VNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGV 500
           V+    +    LLGP GAGK+  +  + GI     G+  + G  I     +   ++ IG 
Sbjct: 18  VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT---PLPPERRGIGF 74

Query: 501 CPQFNILWDALSGEEHLHL 519
            PQ   L+  LS   ++  
Sbjct: 75  VPQDYALFPHLSVYRNIAY 93

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQ 495
            +  + ++I + ++  ++G +G+GK+T    +        G  LI G  +        ++
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA-LADPNWLR 76

Query: 496 KSIGVCPQFNILWD 509
           + +GV  Q N+L +
Sbjct: 77  RQVGVVLQDNVLLN 90

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 6/35 (17%), Positives = 9/35 (25%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR 486
           + G  G GKTT +  +                   
Sbjct: 5   ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	536
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.94
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.94
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.9
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.88
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.88
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.87
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.86
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.86
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.85
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.7
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.68
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.24
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.56
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.95
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.71
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.65
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.53
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.52
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.38
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.34
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.28
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.15
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.14
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.09
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.05
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.99
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.67
d1okkd2	207	GTPase domain of the signal recognition particle r	95.66
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.61
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.59
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.43
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.41
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.41
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.4
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.35
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.22
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.14
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.14
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.08
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.05
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.0
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.99
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.87
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.84
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.72
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.66
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.62
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.62
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.61
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.6
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.58
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.51
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.45
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.35
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.32
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.27
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.26
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.24
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.2
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.15
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.01
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.88
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.82
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.76
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.74
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.72
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.69
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.61
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.51
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.43
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.41
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.23
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.15
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.15
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.84
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.83
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.83
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.79
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	92.78
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.77
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.73
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.69
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.57
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.54
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.43
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.34
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.32
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.28
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.17
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.03
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.0
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.99
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.92
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	91.76
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.71
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	91.67
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	91.6
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.57
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	91.54
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.51
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.51
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.48
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.47
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.37
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.36
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	91.28
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.24
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.24
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.21
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.17
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.17
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.11
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.99
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.98
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.95
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	90.93
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.92
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.92
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	90.83
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.77
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	90.76
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	90.72
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.71
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.47
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	90.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.41
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	90.37
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.31
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	90.16
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	90.15
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	90.06
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	90.0
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	89.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.83
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.8
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.75
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	89.67
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.64
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	89.61
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	89.59
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.58
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.58
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.54
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	89.48
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.45
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	89.44
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	89.41
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.4
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.3
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	89.18
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	89.06
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	89.02
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	88.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	88.86
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	88.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	88.69
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.44
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	88.34
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.32
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	88.06
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	87.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	87.91
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	87.7
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	87.68
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	87.67
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	87.67
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	87.56
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	87.27
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	87.26
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	87.22
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	87.06
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	86.98
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	86.95
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	86.88
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	86.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	86.53
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	86.45
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	86.2
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	86.16
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	85.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.74
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	85.55
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.37
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.12
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	84.5
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	84.34
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	84.26
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	84.08
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.07
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	83.76
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	83.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	83.59
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	83.59
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	82.57
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	82.29
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.08
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	81.98
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.76
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	81.66
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	81.36
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	80.34

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=3.2e-28  Score=233.58  Aligned_cols=112  Identities=26%  Similarity=0.408  Sum_probs=94.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+|+|++.               .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         6 ~I~v~nlsk~yg~~---------------~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i   70 (239)
T d1v43a3           6 EVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV   70 (239)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCE---------------EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceec
Confidence            48999999999653               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ...   ...+++||||||++.||+.+||+||+.+.++++|++++++++.+
T Consensus        71 ~~~---~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~  117 (239)
T d1v43a3          71 TYL---PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV  117 (239)
T ss_dssp             TTS---CGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH
T ss_pred             ccC---CcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHH
Confidence            532   23467899999999999999999999999999999988877654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.7e-28  Score=233.33  Aligned_cols=111  Identities=22%  Similarity=0.391  Sum_probs=80.1

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      |+++||+|+|++.               +||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         1 Iev~nv~k~yg~~---------------~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~   65 (232)
T d2awna2           1 VQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN   65 (232)
T ss_dssp             EEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCT
T ss_pred             CEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECC
Confidence            6899999999642               6999999999999999999999999999999999999999999999999985


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      .   ....+++||||||++.|++.+||+||+.+...++|++++++++.+
T Consensus        66 ~---~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v  111 (232)
T d2awna2          66 D---TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV  111 (232)
T ss_dssp             T---SCGGGTCEEEECSSCCC---------------------CHHHHHH
T ss_pred             C---CchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3   234567899999999999999999999999999999887766544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.94  E-value=9.6e-28  Score=230.61  Aligned_cols=115  Identities=19%  Similarity=0.349  Sum_probs=102.2

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+|.|++.               +||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         3 ~i~v~nl~k~yg~~---------------~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i   67 (240)
T d1g2912           3 GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV   67 (240)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             cEEEEeEEEEECCE---------------EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEe
Confidence            58999999999642               699999999999999999999999999999999999999999999999998


Q ss_pred             CCccc---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVS---MTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~---~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ....+   ....|+.+|||||++.|+++|||+||+.+..+++|.+++++++.|
T Consensus        68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v  120 (240)
T d1g2912          68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV  120 (240)
T ss_dssp             EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHH
Confidence            43211   122367899999999999999999999999999999988877655

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.1e-27  Score=228.26  Aligned_cols=119  Identities=21%  Similarity=0.369  Sum_probs=105.0

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+|+|++..           +.+.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus         1 mi~v~nlsk~y~~~~-----------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i   69 (240)
T d3dhwc1           1 MIKLSNITKVFHQGT-----------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL   69 (240)
T ss_dssp             CEEEEEEEEEEECSS-----------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEE
T ss_pred             CEEEEeEEEEeCCCC-----------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEe
Confidence            378999999997532           245799999999999999999999999999999999999999999999999999


Q ss_pred             CCc--ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSS--VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~--~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ...  .+..+.|+++||+||+..|++.+||+||+.+..+++|++++++++.+
T Consensus        70 ~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v  121 (240)
T d3dhwc1          70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV  121 (240)
T ss_dssp             CTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred             eeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence            632  23456778899999999999999999999999999999988776654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=6.5e-27  Score=225.56  Aligned_cols=113  Identities=26%  Similarity=0.419  Sum_probs=103.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      +|+++||+|+|++.               +||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         2 aI~v~nl~k~yg~~---------------~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i   66 (238)
T d1vpla_           2 AVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV   66 (238)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             CEEEEeEEEEECCE---------------EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEec
Confidence            58999999999753               699999999999999999999999999999999999999999999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      .  ....+.|+.+|||||.+.+++++|++||+.+++.+++.+.+++++.+
T Consensus        67 ~--~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~  114 (238)
T d1vpla_          67 V--EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV  114 (238)
T ss_dssp             T--TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             c--cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHH
Confidence            5  34567889999999999999999999999999999999887766543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=6e-27  Score=223.23  Aligned_cols=105  Identities=20%  Similarity=0.374  Sum_probs=95.7

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+|+|++                .||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++
T Consensus         1 mi~v~nlsk~y~~----------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i   64 (229)
T d3d31a2           1 MIEIESLSRKWKN----------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV   64 (229)
T ss_dssp             CEEEEEEEEECSS----------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred             CEEEEEEEEEeCC----------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEec
Confidence            3789999999953                489999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLD  529 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~  529 (536)
                      ..   ....|+++||+||++.||+++||+||+.+..++++.+.+
T Consensus        65 ~~---~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~  105 (229)
T d3d31a2          65 TD---LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP  105 (229)
T ss_dssp             TT---SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH
T ss_pred             cc---cchhHhcceeeccccccCccccHHHHHHHHHhhccccHH
Confidence            53   234467899999999999999999999999999988654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=2.9e-27  Score=227.01  Aligned_cols=117  Identities=21%  Similarity=0.332  Sum_probs=102.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+|+|++.             ++.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         3 ~i~v~nlsk~y~~g-------------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i   69 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV   69 (242)
T ss_dssp             CEEEEEEEEEEGGG-------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCC-------------CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEe
Confidence            48999999999632             24799999999999999999999999999999999999999999999999998


Q ss_pred             CCc--ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          486 RSS--VSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~--~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      ...  ......|+++||+||++.|+++|||+||+.+..+.+|++++++++.+
T Consensus        70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v  121 (242)
T d1oxxk2          70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV  121 (242)
T ss_dssp             EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH
T ss_pred             ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHH
Confidence            521  12344577899999999999999999999999999999988776654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=9.1e-26  Score=215.56  Aligned_cols=117  Identities=21%  Similarity=0.314  Sum_probs=97.6

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+|.|+...           +.+.||+|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++
T Consensus         1 mI~i~nlsk~y~~~~-----------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i   69 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT   69 (230)
T ss_dssp             CEEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             CEEEEeEEEEeCCCC-----------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEc
Confidence            378999999997531           234699999999999999999999999999999999999999999999999999


Q ss_pred             CCccc--HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHHhcC---CChHhHhh
Q 009374          486 RSSVS--MTNI-QKSIGVCPQFNILWDALSGEEHLHLFANIKG---LPLDSIKS  533 (536)
Q Consensus       486 ~~~~~--~~~~-~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg---~~~~~~~~  533 (536)
                      ....+  ..+. |++|||+||++.|++++||+||+.+...+++   .+.++..+
T Consensus        70 ~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~  123 (230)
T d1l2ta_          70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK  123 (230)
T ss_dssp             TTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHH
T ss_pred             CcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHH
Confidence            64322  2333 3579999999999999999999999887764   34444433

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.92  E-value=1.4e-25  Score=216.58  Aligned_cols=107  Identities=26%  Similarity=0.434  Sum_probs=94.0

Q ss_pred             CceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCE
Q 009374          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGF  483 (536)
Q Consensus       404 ~~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~  483 (536)
                      +..++++||+|.|++.               +||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+
T Consensus         4 d~~Lev~~l~k~yg~~---------------~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~   68 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ   68 (240)
T ss_dssp             SEEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             ceEEEEeeEEEEECCE---------------EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccc
Confidence            4679999999999653               6999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 009374          484 SIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKG  525 (536)
Q Consensus       484 ~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg  525 (536)
                      ++.........|..+||+||+..+|++|||+||+.+.+..+.
T Consensus        69 ~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~  110 (240)
T d1ji0a_          69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK  110 (240)
T ss_dssp             ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred             ccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC
Confidence            996433333345679999999999999999999987765443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=8.2e-25  Score=213.07  Aligned_cols=115  Identities=17%  Similarity=0.355  Sum_probs=99.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|+|++.               .||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         2 ~Lev~nl~k~yg~~---------------~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i   66 (258)
T d1b0ua_           2 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNI   66 (258)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCE---------------EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEe
Confidence            48999999999653               699999999999999999999999999999999999999999999999998


Q ss_pred             CCc------------ccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH-HHhcCCChHhHhhhh
Q 009374          486 RSS------------VSMTNIQKSIGVCPQFNILWDALSGEEHLHLF-ANIKGLPLDSIKSVC  535 (536)
Q Consensus       486 ~~~------------~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~-~~lkg~~~~~~~~~v  535 (536)
                      ...            ......|+++||+||++.+++.+||+||+.+. ...++.++++.++.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~  129 (258)
T d1b0ua_          67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA  129 (258)
T ss_dssp             CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             ccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHH
Confidence            421            11245678899999999999999999999986 467788877665543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=9.8e-25  Score=212.57  Aligned_cols=101  Identities=22%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+|+|++.               +||+||||++++||++||+||||||||||+++|+|+++|++|+|+++|+++
T Consensus         4 iL~v~nlsk~yg~~---------------~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i   68 (254)
T d1g6ha_           4 ILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI   68 (254)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             eEEEEEEEEEECCe---------------EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence            68999999999753               699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      ......+..++.+|++||++.+++++||+||+.+..
T Consensus        69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~  104 (254)
T d1g6ha_          69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE  104 (254)
T ss_dssp             TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehh
Confidence            754444445667999999999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.88  E-value=9.4e-23  Score=191.56  Aligned_cols=100  Identities=24%  Similarity=0.364  Sum_probs=92.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||++.|+.                ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         2 ~lev~~ls~~y~~----------------~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i   65 (200)
T d1sgwa_           2 KLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI   65 (200)
T ss_dssp             EEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred             eEEEEEEEEEeCC----------------eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEeh
Confidence            4899999999942                589999999999999999999999999999999999999999999999987


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLP  527 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~  527 (536)
                      .      +.+.+++|+||+..+++.+|++|++.+.+.+.|..
T Consensus        66 ~------~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~  101 (200)
T d1sgwa_          66 T------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK  101 (200)
T ss_dssp             G------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred             h------HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc
Confidence            3      45778999999999999999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.1e-23  Score=197.74  Aligned_cols=99  Identities=18%  Similarity=0.296  Sum_probs=89.9

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      |+++||+++|++..             ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~   68 (241)
T d2pmka1           2 ITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA   68 (241)
T ss_dssp             EEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             eEEEEEEEEeCCCC-------------cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEec
Confidence            78999999997542             26999999999999999999999999999999999999999999999999996


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      . .+.+.+|+++|||||++.+|+ .|++||+.+.
T Consensus        69 ~-~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~  100 (241)
T d2pmka1          69 L-ADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA  100 (241)
T ss_dssp             T-SCHHHHHHHEEEECSSCCCTT-SBHHHHHCTT
T ss_pred             c-cchhhhhceEEEEecccccCC-cccccccccc
Confidence            3 567788999999999999986 5999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=197.12  Aligned_cols=102  Identities=22%  Similarity=0.343  Sum_probs=91.6

Q ss_pred             ceEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       405 ~~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..|+++||+++|+++.            ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.+
T Consensus        10 g~I~~~nvsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~   77 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRP------------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP   77 (251)
T ss_dssp             CCEEEEEEEECCTTST------------TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             ceEEEEEEEEECCCCC------------CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEe
Confidence            3699999999997642            2369999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          485 IRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       485 i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +.. .+.+..|+++||+||++.+|+ .|++||+.+.
T Consensus        78 i~~-~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g  111 (251)
T d1jj7a_          78 LPQ-YEHRYLHRQVAAVGQEPQVFG-RSLQENIAYG  111 (251)
T ss_dssp             GGG-BCHHHHHHHEEEECSSCCCCS-SBHHHHHHCS
T ss_pred             cch-hhhHHHHHHhhhccccccccC-cchhhhhhhh
Confidence            963 456788999999999999996 5999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.87  E-value=3.2e-23  Score=200.15  Aligned_cols=99  Identities=21%  Similarity=0.339  Sum_probs=89.3

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++||+++|++.+              .+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         1 mle~knvsf~Y~~~~--------------~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   66 (242)
T d1mv5a_           1 MLSARHVDFAYDDSE--------------QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI   66 (242)
T ss_dssp             CEEEEEEEECSSSSS--------------CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES
T ss_pred             CEEEEEEEEECCCCC--------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEe
Confidence            378999999997531              589999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      .. .+.+.+|+++|||||++.+|+. |++||+.+.
T Consensus        67 ~~-~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~   99 (242)
T d1mv5a_          67 DN-ISLENWRSQIGFVSQDSAIMAG-TIRENLTYG   99 (242)
T ss_dssp             TT-TSCSCCTTTCCEECCSSCCCCE-EHHHHTTSC
T ss_pred             cc-ccHHHHHhheEEEccccccCCc-chhhheecc
Confidence            63 3456788999999999999987 999998664

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.86  E-value=2.2e-22  Score=195.21  Aligned_cols=100  Identities=25%  Similarity=0.382  Sum_probs=90.9

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+++|+++.             ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus        16 ~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   82 (255)
T d2hyda1          16 RIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI   82 (255)
T ss_dssp             CEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred             EEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc
Confidence            599999999997642             2599999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      +. .+.+.+|+++|||||++.+|+ .|++||+.+.
T Consensus        83 ~~-~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g  115 (255)
T d2hyda1          83 KD-FLTGSLRNQIGLVQQDNILFS-DTVKENILLG  115 (255)
T ss_dssp             GG-SCHHHHHHTEEEECSSCCCCS-SBHHHHHGGG
T ss_pred             cc-CCHHHhhheeeeeeccccCCC-CCHHHHHhcc
Confidence            63 467789999999999999986 5999999865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=1.3e-22  Score=194.03  Aligned_cols=105  Identities=20%  Similarity=0.318  Sum_probs=87.5

Q ss_pred             EEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       407 i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +++ ++.|+|++-               . + |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         3 l~v-~~~k~~g~~---------------~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~   63 (240)
T d2onka1           3 LKV-RAEKRLGNF---------------R-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT   63 (240)
T ss_dssp             EEE-EEEEEETTE---------------E-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEE-EEEEEECCE---------------E-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECC
Confidence            566 567888642               2 3 7999995 6899999999999999999999999999999999999995


Q ss_pred             CcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhhhh
Q 009374          487 SSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKSVC  535 (536)
Q Consensus       487 ~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~~v  535 (536)
                      .   ....|++|||+||++.|+++|||+||+.+.  +++.++++.++.+
T Consensus        64 ~---~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~--l~~~~~~~~~~~v  107 (240)
T d2onka1          64 P---LPPERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRV  107 (240)
T ss_dssp             T---SCTTTSCCBCCCSSCCCCTTSCHHHHHHTT--CTTSCHHHHHHHH
T ss_pred             c---CCHHHcCceeeccchhhcccchhhHhhhhh--hcccCHHHHHHHH
Confidence            3   234478899999999999999999999985  5677776665543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=8.7e-22  Score=191.18  Aligned_cols=112  Identities=19%  Similarity=0.395  Sum_probs=95.8

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .|+++||+++|+++.             ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus        13 ~I~~~nvsf~Y~~~~-------------~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   79 (253)
T d3b60a1          13 DLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL   79 (253)
T ss_dssp             CEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred             EEEEEEEEEEeCCCC-------------CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCccc
Confidence            599999999997642             2699999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHHHhcCCChHhHhh
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFANIKGLPLDSIKS  533 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~~lkg~~~~~~~~  533 (536)
                      .. .+...+|+.+|||||++.+++. |+++|+.+. +....+.+++.+
T Consensus        80 ~~-~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~-~~~~~~~~~i~~  124 (253)
T d3b60a1          80 RE-YTLASLRNQVALVSQNVHLFND-TVANNIAYA-RTEEYSREQIEE  124 (253)
T ss_dssp             TT-BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTT-TTSCCCHHHHHH
T ss_pred             ch-hhhhhhhheEEEEeeccccCCc-chhhhhhhc-CcccCCHHHHHH
Confidence            63 4677889999999999999865 899998764 334445555443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1e-17  Score=160.30  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=81.5

Q ss_pred             eEEEeeeEEEcCCCCcCccccccCCCCCcceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       406 ~i~~~~l~k~y~~~~~~~~~~~~~~~~~~~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .++++|++++|                   +|+++||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++
T Consensus         3 il~~~dv~~~~-------------------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i   62 (231)
T d1l7vc_           3 VMQLQDVAEST-------------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPL   62 (231)
T ss_dssp             EEEEEEECCTT-------------------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBG
T ss_pred             EEEEECcccCc-------------------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEEC
Confidence            57888886543                   799999999999999999999999999999999976 6899999999998


Q ss_pred             CCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          486 RSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       486 ~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .. ....+.+...+|.+|........++++++.++.
T Consensus        63 ~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (231)
T d1l7vc_          63 EA-WSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ   97 (231)
T ss_dssp             GG-SCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHC
T ss_pred             Cc-CCHHHHHhhceeeeccccCCccccHHHHhhhcc
Confidence            53 345566777999999988878889999988754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.7e-18  Score=166.47  Aligned_cols=71  Identities=23%  Similarity=0.407  Sum_probs=66.8

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHH
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGE  514 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~  514 (536)
                      ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|              +++||||++.+++. |++
T Consensus        50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l~~~-tv~  114 (281)
T d1r0wa_          50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------------RVSFCSQFSWIMPG-TIK  114 (281)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--------------CEEEECSSCCCCSE-EHH
T ss_pred             eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--------------EEEEEeccccccCc-eee
Confidence            699999999999999999999999999999999999999999999887              38999999999976 999


Q ss_pred             HHHHHH
Q 009374          515 EHLHLF  520 (536)
Q Consensus       515 e~L~~~  520 (536)
                      ||+.+.
T Consensus       115 eni~~~  120 (281)
T d1r0wa_         115 ENIIFG  120 (281)
T ss_dssp             HHHTTT
T ss_pred             cccccc
Confidence            999764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=1.6e-07  Score=83.74  Aligned_cols=36  Identities=17%  Similarity=0.068  Sum_probs=32.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      ++|.||||||||||+++|+|.++|+.|.+.+.|.+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch
Confidence            689999999999999999999999999999987654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=1.9e-05  Score=70.52  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .+++.++++.+| ++.|+|+|||||||++.+|.-.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            467777888665 9999999999999999999744

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.00029  Score=64.90  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~  479 (536)
                      +|++.+++|++|+|||||+|.|.|...-..|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5899999999999999999999997666556664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00025  Score=61.35  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      ++++.|++|||||||++.|...+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999865543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.00038  Score=66.67  Aligned_cols=22  Identities=32%  Similarity=0.712  Sum_probs=19.5

Q ss_pred             cEEEEeCCCCCchhHHHHhHcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .+++|+|+|||||||+|.+|.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3899999999999999998844

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.53  E-value=0.00024  Score=65.66  Aligned_cols=34  Identities=15%  Similarity=0.320  Sum_probs=22.9

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEEE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDAL  479 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~  479 (536)
                      +|++..++|++|+|||||+|.|.|......|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5889999999999999999999998766667765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.00055  Score=60.57  Aligned_cols=26  Identities=35%  Similarity=0.730  Sum_probs=23.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      |.++.|+||+||||||+++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999976553

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00037  Score=60.77  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .+.|.||+|+|||||++.++..+....+.+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4789999999999999999999877666554433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.28  E-value=0.0007  Score=58.79  Aligned_cols=27  Identities=19%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVT  474 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt  474 (536)
                      .++++.|.+|||||||++-|...++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            378999999999999999888776653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.0012  Score=65.66  Aligned_cols=27  Identities=26%  Similarity=0.715  Sum_probs=22.9

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      +++..+.+++|+|+|||||||++.+|.
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            444556799999999999999999984

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.14  E-value=0.0019  Score=56.79  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=27.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc------------ccCccEEEEcCEec
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT------------PVTGGDALIYGFSI  485 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~------------~pt~G~i~i~g~~i  485 (536)
                      +|++|+.|+|||||++.|+|..            .+..|.+.++|.++
T Consensus        11 V~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~   58 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY   58 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             EEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCcee
Confidence            6999999999999999998753            22345677777653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0012  Score=56.95  Aligned_cols=27  Identities=22%  Similarity=0.464  Sum_probs=24.2

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.05  E-value=0.0011  Score=59.16  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|+|+.|||||||++.|+|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            38999999999999999999853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.99  E-value=0.0015  Score=56.43  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=24.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .|+++.|.|++||||||+-+.|+..+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999987653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.67  E-value=0.0022  Score=58.64  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +++++||.|||||||++.|..-
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.66  E-value=0.0031  Score=57.08  Aligned_cols=27  Identities=41%  Similarity=0.529  Sum_probs=22.7

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++.++.|+||+|+|||||+-=|+....
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            568999999999999999877776554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.61  E-value=0.0026  Score=54.88  Aligned_cols=28  Identities=18%  Similarity=0.135  Sum_probs=24.5

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+|.++-|.|+.||||||+-+.|+-.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999996653

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0029  Score=57.22  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=22.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .|.++.|+||+|+||||+++.|.-.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999988644

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.43  E-value=0.0033  Score=54.47  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0033  Score=54.62  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +++|+|+.|+|||||+|.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999974

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.41  E-value=0.0026  Score=55.19  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=25.3

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      .++++.|+.||||||+.+.|+-.+......+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~   32 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY   32 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence            5889999999999999999987765544443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.40  E-value=0.0026  Score=55.83  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +||+|+.++|||||+|.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999874

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.35  E-value=0.003  Score=55.21  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|+.|+|||||++.|+|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.22  E-value=0.0046  Score=53.19  Aligned_cols=27  Identities=22%  Similarity=0.301  Sum_probs=23.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|-.+.|.|+.||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            355678899999999999999998654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.14  E-value=0.0034  Score=54.84  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +||+|..|+|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999999853

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.14  E-value=0.0041  Score=53.40  Aligned_cols=26  Identities=31%  Similarity=0.663  Sum_probs=23.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ..++.|.|++||||||+-+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46888999999999999999998774

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.08  E-value=0.0051  Score=51.77  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      +++.|.|++||||||+.+-|..   ...|...++..+
T Consensus         3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d~   36 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRDD   36 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---hCCCCEEechHH
Confidence            4778999999999999997643   234666666544

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.05  E-value=0.0051  Score=53.66  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +++|+|+.|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.00  E-value=0.0042  Score=53.76  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++|+|+.|||||||++.++|-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36799999999999999999865

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.99  E-value=0.0043  Score=56.35  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+..++.++||||+||||++-=|+-.+.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999877776553

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0043  Score=56.26  Aligned_cols=26  Identities=38%  Similarity=0.460  Sum_probs=22.0

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      -.++.|+||||+||||++-=|+-.+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999888876655

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.87  E-value=0.0051  Score=53.06  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ..+++.|+.|+||||+.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0053  Score=52.28  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36899999999999999998764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0083  Score=55.23  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      +=+|++++ +.+.+..|-|||.+||||+||.++
T Consensus        31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            34555554 345788999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.66  E-value=0.0065  Score=58.80  Aligned_cols=42  Identities=26%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             eEEEecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       441 sl~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      ...++.+.-+.+.|+.||||||+++.|.+..+|..=-++|..
T Consensus       160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             HHHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            344566667899999999999999999999998776677743

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.62  E-value=0.0074  Score=54.49  Aligned_cols=26  Identities=38%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ..++.|+||||+||||++-=|+..+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999988886654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.62  E-value=0.0066  Score=53.17  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      ++||-|+.||||||+.+.|.-.+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6899999999999999999876553

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.0068  Score=53.51  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+||+||||||+++.|....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5799999999999999886543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.0062  Score=51.28  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++|+|+.|+|||||++.+++-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999985

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.58  E-value=0.0066  Score=53.94  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .++|+|+.|||||||++.|+|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.56  E-value=0.0079  Score=51.23  Aligned_cols=32  Identities=38%  Similarity=0.595  Sum_probs=24.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .++.|.|+.||||||+.+.|+..+.   +.+.++|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            3678999999999999999987653   3455554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.0059  Score=52.93  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|+.++|||||+|.|+|..
T Consensus        19 I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          19 VAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.0075  Score=50.72  Aligned_cols=23  Identities=39%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .+.|.|+.||||||+-+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999998765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.45  E-value=0.0073  Score=52.86  Aligned_cols=21  Identities=38%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +||+|+..||||||++.|+|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            799999999999999999974

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.35  E-value=0.0086  Score=51.14  Aligned_cols=22  Identities=36%  Similarity=0.383  Sum_probs=18.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|.|+.||||||+-+.|+--+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999997543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.01  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             cEEEEeCCCCCchhHHHHhHcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g  469 (536)
                      ..+.|+||+|+||||+++-|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.27  E-value=0.011  Score=53.91  Aligned_cols=28  Identities=36%  Similarity=0.463  Sum_probs=22.2

Q ss_pred             eceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       438 ~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      +|+++  . +++..|.|||.+||||++|.++
T Consensus        29 Ndi~~--~-~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          29 NDLEM--A-HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEE--S-SCEEEEESCSSSSHHHHHHHHH
T ss_pred             ceEEe--C-CcEEEEECCCccccchhhhhhH
Confidence            44544  2 4689999999999999999764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.26  E-value=0.013  Score=50.13  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|+.|+|||||++.+.|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            5799999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0062  Score=53.38  Aligned_cols=27  Identities=33%  Similarity=0.329  Sum_probs=23.5

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +|-++-|.|+.||||||+-+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577888999999999999999987553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.20  E-value=0.0073  Score=54.70  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=18.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +..++.|+||+|+||||++-=|+..+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999877776554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.0097  Score=52.68  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=18.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.|+||+||||||+.+.|.-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            569999999999999998543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.01  E-value=0.012  Score=51.95  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ..++.|+||.||||||+-+.|+--+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999987543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.91  E-value=0.011  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+|+.|+|||||++.+++-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5699999999999999987654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.88  E-value=0.011  Score=53.85  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++|++||..||||||++.|++.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5899999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.84  E-value=0.01  Score=52.43  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=24.0

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.++.++.|+||.||||||.-+.|+-.+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567889999999999999999997644

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.82  E-value=0.011  Score=49.97  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|..|+|||||++.+++-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.014  Score=52.30  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++||-|+.||||||+-+.|.-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999886654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.74  E-value=0.0043  Score=52.79  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|+.|+|||||++.|+|..
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.72  E-value=0.013  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +..+.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            567889999999999999987764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.69  E-value=0.014  Score=50.12  Aligned_cols=22  Identities=27%  Similarity=0.373  Sum_probs=19.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+|+.||||||+-++|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999998765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.61  E-value=0.013  Score=54.60  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=20.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|.+|+|||||+|.|.|..
T Consensus        35 I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            6899999999999999999863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.02  Score=50.24  Aligned_cols=27  Identities=22%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .+++|+++-|.|++|+||||+.-.++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999999999876654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.43  E-value=0.012  Score=56.85  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .-++|+.|+.|||||||++.|+..+.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999985543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.018  Score=50.84  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -.++.|+||.||||||.-+.|+--+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998755

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.23  E-value=0.016  Score=51.61  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      -++|+|+.|+|||||++.+++-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.15  E-value=0.017  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=18.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999997544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.02  Score=51.48  Aligned_cols=28  Identities=29%  Similarity=0.283  Sum_probs=24.4

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++|-++++-|+-||||||+.+.|..-+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999887654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.11  E-value=0.024  Score=49.21  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      ++-+++.+.|+.||||||+.+-+.-    ..|-+.|+..++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~----~~~~~~i~~D~~~   49 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV----SAGYVHVNRDTLG   49 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG----GGTCEEEEHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH----hcCCEEEchHHHH
Confidence            4557899999999999999987753    2466777765553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.84  E-value=0.021  Score=49.00  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.|+|..|||||||++.|.+.
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            579999999999999999886

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.83  E-value=0.019  Score=50.39  Aligned_cols=32  Identities=41%  Similarity=0.546  Sum_probs=24.1

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHc---CccccCccE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLT---GITPVTGGD  477 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~---g~~~pt~G~  477 (536)
                      +|=-+.|+||.||||||.-+.|+   |+..-+.|+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gd   36 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGD   36 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence            45556799999999999999999   544444443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.83  E-value=0.021  Score=52.63  Aligned_cols=32  Identities=31%  Similarity=0.273  Sum_probs=25.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccEEEEcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGDALIYG  482 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g  482 (536)
                      .+-|.||.|+||||+.+.|++.+..  +-+.+++
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            4679999999999999999997753  3455654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.82  E-value=0.02  Score=48.85  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            578999999999999977553

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.79  E-value=0.026  Score=49.51  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -++++-|+-||||||+++.|...+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999999766

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.78  E-value=0.023  Score=48.63  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999998665

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.77  E-value=0.024  Score=50.00  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++.+.|..|+||||+.+.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999986543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.73  E-value=0.024  Score=50.08  Aligned_cols=21  Identities=38%  Similarity=0.571  Sum_probs=19.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +|++||-.||||||++.|+|.
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEeccCCcHHHHHHHHHhh
Confidence            689999999999999999984

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.025  Score=49.52  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++.|+||.||||||.-+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.04  Score=47.09  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=21.9

Q ss_pred             EEEeCCCCCchhHHHHhHcC-----ccccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g-----~~~pt~G~  477 (536)
                      ++++|..|+|||||++-+.+     .+.||-|.
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~   37 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED   37 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence            57999999999999987665     24566664

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.54  E-value=0.026  Score=49.41  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++||.|..||||||..+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.028  Score=50.08  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +|..+++-|+-||||||+.+.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999986553

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.029  Score=50.74  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++...++-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356789999999999999999998763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.32  E-value=0.019  Score=53.52  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHcC
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.||++.-.+.+||++.|.|++|+||||++.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            57888777799999999999999999999877764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.28  E-value=0.026  Score=49.37  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=18.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|.||.||||||+-+.|+--+
T Consensus         6 I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           6 VMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999987544

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.052  Score=46.44  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             EEEeCCCCCchhHHHHhHcC-----ccccCccEEE
Q 009374          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGDAL  479 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g-----~~~pt~G~i~  479 (536)
                      +.|+|..|+|||||++-+++     ...||.|...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~   42 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY   42 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence            78999999999999997654     2356766543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.03  E-value=0.033  Score=47.78  Aligned_cols=21  Identities=43%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|+.|+|||||++.+.+-
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            579999999999999999774

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.00  E-value=0.033  Score=48.05  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+||.||||||.-+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5699999999999999996544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.99  E-value=0.035  Score=49.96  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.5

Q ss_pred             cCcEEEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       446 ~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      +|..+++-|+-||||||+.++|.-.+.. .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence            6889999999999999999999876653 3443

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.92  E-value=0.036  Score=47.58  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.3

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|+.|+|||||++.+++
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            67999999999999999875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.76  E-value=0.032  Score=47.77  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=18.0

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|..|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            68999999999999998764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.71  E-value=0.037  Score=54.84  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|..|+|||||+|.|.|.
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            699999999999999999984

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.039  Score=47.49  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.0

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|..|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998755

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=91.60  E-value=0.042  Score=47.66  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+||.||||||.-+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999998654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.038  Score=47.11  Aligned_cols=28  Identities=25%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc-----cccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G~  477 (536)
                      ++++|..|+|||||++.+++-     ..|+.|.
T Consensus         6 i~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~   38 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED   38 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCCccce
Confidence            689999999999999988753     3455553

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.028  Score=53.62  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=27.2

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc-----cCccEEEEcCEe
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP-----VTGGDALIYGFS  484 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~-----pt~G~i~i~g~~  484 (536)
                      ++||-|+.||||||+-+.|..++.     +.-.-|..+|.-
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            789999999999999999988764     233335556653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.51  E-value=0.033  Score=48.25  Aligned_cols=22  Identities=41%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.++|+.|+|||||++.+.+-.
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~~   41 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIGE   41 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCSE
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5699999999999999997654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.51  E-value=0.036  Score=49.99  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=22.4

Q ss_pred             EEEEeCCCCCchhHHHHhH-cCccccCcc
Q 009374          449 LFCLLGPNGAGKTTTISCL-TGITPVTGG  476 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l-~g~~~pt~G  476 (536)
                      -+.|||..|+||||+++-+ .+-..||-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            3579999999999999876 455667766

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.48  E-value=0.045  Score=48.66  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=18.6

Q ss_pred             EEEEeCCCCCchhHHHHhHc
Q 009374          449 LFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~  468 (536)
                      ++||.|..||||||..+++.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.47  E-value=0.039  Score=49.75  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +-|.||+|+||||+.++++..+
T Consensus        48 lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            5799999999999999998764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.37  E-value=0.05  Score=48.71  Aligned_cols=42  Identities=21%  Similarity=0.119  Sum_probs=31.1

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccC--ccEEEEcCEecC
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDALIYGFSIR  486 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt--~G~i~i~g~~i~  486 (536)
                      ++|-++-|.|.+||||||+-+.|.-.+...  .-.+.++|.+++
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            567889999999999999999997644322  234667776553

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.36  E-value=0.048  Score=50.93  Aligned_cols=77  Identities=21%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCccE-EEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~-i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .++.|.++-+-||+|+||||+.-.++.......|. |+|+.+.-.   +.+.+ +.+|+=+.+-.....-+++|-+....
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~---~~e~a-~~~GvD~d~il~~~~~~~E~~~~~~~  131 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL---DPDYA-KKLGVDTDSLLVSQPDTGEQALEIAD  131 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC---CHHHH-HHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC---CHHHH-HHhCCCHHHeEEecCCCHHHHHHHHH
Confidence            79999999999999999999976665554444455 677776532   22223 34576555544555667877776554


Q ss_pred             Hh
Q 009374          522 NI  523 (536)
Q Consensus       522 ~l  523 (536)
                      .+
T Consensus       132 ~l  133 (269)
T d1mo6a1         132 ML  133 (269)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.28  E-value=0.043  Score=52.70  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      .-++||.|+.|||||||+..|...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            357899999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.051  Score=50.59  Aligned_cols=77  Identities=17%  Similarity=0.150  Sum_probs=48.2

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCcc-ccCccEEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGIT-PVTGGDALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLF  520 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~-~pt~G~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~  520 (536)
                      =.+++|.++-+-||+|+||||+.-.++... .+..--++|+.+.-.   +.+ ..+.+|+=+.+-.....-|++|-+...
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~---~~~-~a~~~Gvd~d~v~~~~~~~~E~~~~~i  124 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL---DPI-YARKLGVDIDNLLCSQPDTGEQALEIC  124 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHH-HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccccc---CHH-HHHHhCCCHHHEEEecCCCHHHHHHHH
Confidence            379999999999999999999876666554 444344788776532   222 223456544433334444666665554


Q ss_pred             HH
Q 009374          521 AN  522 (536)
Q Consensus       521 ~~  522 (536)
                      ..
T Consensus       125 ~~  126 (263)
T d1u94a1         125 DA  126 (263)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.24  E-value=0.043  Score=54.39  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             ecCcEEEEeCCCCCchhHHHHhHcCccccCccE
Q 009374          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (536)
Q Consensus       445 ~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G~  477 (536)
                      .++.++.+.||.|||||||+..+.........+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence            567789999999999999999988866433344

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.21  E-value=0.057  Score=48.42  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .+++|+++-|.|+.|+||||+.--++
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            59999999999999999999987664

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.047  Score=48.43  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=23.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc---ccCccEE
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT---PVTGGDA  478 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~---~pt~G~i  478 (536)
                      |++|.||.||||||.-+.|+--+   .-+.|++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            78999999999999999998544   3444554

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.17  E-value=0.054  Score=46.29  Aligned_cols=28  Identities=32%  Similarity=0.261  Sum_probs=24.2

Q ss_pred             EecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .++|.++.|-|+=||||||+.|.++.-+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            4578999999999999999999887544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.11  E-value=0.081  Score=45.05  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCc-----cccCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGG  476 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G  476 (536)
                      ++++|..|+|||||++-+.+-     ..||.|
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~   37 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG   37 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence            579999999999999976643     356666

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.99  E-value=0.049  Score=49.35  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.0

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCL  467 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l  467 (536)
                      .+++|+++-|.|+.|+||||+.--+
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHH
Confidence            4999999999999999999986533

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.98  E-value=0.094  Score=45.61  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=25.9

Q ss_pred             ceeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       435 ~al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      ..++...+.+ .|.-+.+.|++|+||||+.-.|.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            4566666666 78889999999999999876553

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.95  E-value=0.054  Score=48.26  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcC
Q 009374          449 LFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++||.|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999853

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.93  E-value=0.056  Score=49.21  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .+-|.||+|+||||+.++++....
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999998764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.92  E-value=0.042  Score=47.13  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCccc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +.++|+.|+||||+++.+.+-..
T Consensus        15 IvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            56999999999999999986554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.049  Score=47.01  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=18.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ..|+||.||||||.-+.|+--
T Consensus         3 I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999998643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.86  E-value=0.058  Score=46.65  Aligned_cols=29  Identities=28%  Similarity=0.375  Sum_probs=25.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCccccCccEE
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPVTGGDA  478 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~pt~G~i  478 (536)
                      +.|||..|+||||+++-+.....||.|..
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            57999999999999999987777888854

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.83  E-value=0.055  Score=45.93  Aligned_cols=20  Identities=20%  Similarity=0.409  Sum_probs=17.5

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++|+|..|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999987663

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.086  Score=45.51  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc----ccCcc-----EEEEcCEe
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT----PVTGG-----DALIYGFS  484 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~----~pt~G-----~i~i~g~~  484 (536)
                      ++++|..|+|||||++-+.+-.    .|+.+     .+.++|.+
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~   51 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQT   51 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceE
Confidence            6899999999999999665532    33332     35667765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.054  Score=46.98  Aligned_cols=21  Identities=38%  Similarity=0.444  Sum_probs=18.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.++|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            679999999999999988753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.72  E-value=0.051  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.++|..|+||||+++.+++-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            579999999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.084  Score=45.17  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=17.5

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.++|..|+||||+++.+++
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67999999999999987754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.06  Score=45.99  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++|+|..|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            5799999999999999998864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.47  E-value=0.057  Score=46.64  Aligned_cols=22  Identities=45%  Similarity=0.545  Sum_probs=18.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ..|+||.||||||.-+.|+--+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999986443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.44  E-value=0.051  Score=48.49  Aligned_cols=19  Identities=37%  Similarity=0.408  Sum_probs=17.9

Q ss_pred             EEEeCCCCCchhHHHHhHc
Q 009374          450 FCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~  468 (536)
                      +|++||-+||||||++.|.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7899999999999999996

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=90.41  E-value=0.058  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -+.|+||.||||||+-+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999998644

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.37  E-value=0.059  Score=46.64  Aligned_cols=22  Identities=41%  Similarity=0.581  Sum_probs=18.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+||.||||||+-+.|+-.+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4588999999999999998654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.31  E-value=0.067  Score=47.47  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -+|++||=.||||||++.|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            37899999999999999999854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.16  E-value=0.067  Score=47.63  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++-||.||||||.-+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999998754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.15  E-value=0.066  Score=48.81  Aligned_cols=25  Identities=20%  Similarity=0.205  Sum_probs=20.7

Q ss_pred             CcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       447 gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.++.|.||.|+|||||++.++-..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4578899999999999999876543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.071  Score=45.29  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=17.7

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+||||+++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.064  Score=45.82  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=18.3

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+|||||++.+++
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.91  E-value=0.08  Score=47.07  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             eeeceeE-EEecCcEEEEeCCCCCchhHHHHh
Q 009374          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC  466 (536)
Q Consensus       436 al~~lsl-~v~~gei~~LlG~NGaGKSTll~~  466 (536)
                      .||++-- .+++|+++-|.|++|+||||+.--
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~   45 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ   45 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence            4555433 599999999999999999999743

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.061  Score=46.09  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=18.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.++|..|+||||+++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            579999999999999987643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.83  E-value=0.061  Score=46.56  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=17.7

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|..|+|||||++.+++
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999987764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.80  E-value=0.081  Score=47.32  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=23.3

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .+++|+++-|.|+.|+||||+.--++
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            39999999999999999999976665

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.75  E-value=0.084  Score=47.58  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             eeeceeE-EEecCcEEEEeCCCCCchhHHHHhHcCcc
Q 009374          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       436 al~~lsl-~v~~gei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      .||.+=- .+++|+++.|.|++|+||||+..-++--.
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3555422 38999999999999999999987665543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.072  Score=45.05  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|..|+|||||++.+.+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.085  Score=45.17  Aligned_cols=22  Identities=32%  Similarity=0.665  Sum_probs=19.4

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|+|..|+|||||++.+++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            5799999999999999988753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.073  Score=45.20  Aligned_cols=35  Identities=17%  Similarity=0.143  Sum_probs=25.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCc-----cccCccE-----EEEcCEe
Q 009374          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGD-----ALIYGFS  484 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G~-----i~i~g~~  484 (536)
                      ++|+|..|+|||||++.+.+-     ..||.|.     +.++|.+
T Consensus         7 v~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~   51 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE   51 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence            689999999999999987642     3456554     3466654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.08  Score=44.92  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCc-----cccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G~  477 (536)
                      +.|+|..|+|||||++-+++-     ..|+-|+
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~   38 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED   38 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCCceee
Confidence            689999999999999888653     3455554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.58  E-value=0.072  Score=47.81  Aligned_cols=22  Identities=45%  Similarity=0.647  Sum_probs=19.4

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +.|-||+|+||||+.+.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            5688999999999999998764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.58  E-value=0.091  Score=48.93  Aligned_cols=77  Identities=21%  Similarity=0.301  Sum_probs=53.2

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHcCccccCcc-EEEEcCEecCCcccHHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-DALIYGFSIRSSVSMTNIQKSIGVCPQFNILWDALSGEEHLHLFA  521 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~g~~~pt~G-~i~i~g~~i~~~~~~~~~~~~ig~~pQ~~~l~~~lTv~e~L~~~~  521 (536)
                      .++.|.++-+-|+.|+||||+.-.++....-..| -++|+.+.--   +. +..+.+|+=+.+-...+.-|++|-+....
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~---~~-~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL---DP-VYARALGVNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CH-HHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC---CH-HHHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence            6899999999999999999998877776554434 4777776431   22 23345676665555556668887776655


Q ss_pred             Hh
Q 009374          522 NI  523 (536)
Q Consensus       522 ~l  523 (536)
                      .+
T Consensus       129 ~l  130 (268)
T d1xp8a1         129 LL  130 (268)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.54  E-value=0.081  Score=44.67  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.9

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.48  E-value=0.066  Score=45.81  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=17.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++++|..|+|||||++.+++-
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988664

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.45  E-value=0.11  Score=44.19  Aligned_cols=28  Identities=21%  Similarity=0.203  Sum_probs=21.7

Q ss_pred             EEEeCCCCCchhHHHHhHcC-----ccccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g-----~~~pt~G~  477 (536)
                      +.|+|..|+||||+++.+.+     ...||.|.
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~   39 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED   39 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccCcceee
Confidence            57899999999999998765     23466554

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.44  E-value=0.057  Score=50.84  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccccCccE-EEEcCE
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITPVTGGD-ALIYGF  483 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~pt~G~-i~i~g~  483 (536)
                      ++|+-|++||||||+-+.|...+....-+ +.|.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            78999999999999999988877543222 355443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.41  E-value=0.088  Score=46.26  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ++++-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999987553

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=0.13  Score=43.79  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=22.2

Q ss_pred             EEEeCCCCCchhHHHHhHcC-----ccccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g-----~~~pt~G~  477 (536)
                      +.|+|..|+|||||++-+.+     .+.||-|.
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~   37 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES   37 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccCCceec
Confidence            57999999999999998874     34566553

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.086  Score=45.29  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.2

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|..|+|||||++.+++
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.18  E-value=0.074  Score=45.19  Aligned_cols=20  Identities=35%  Similarity=0.718  Sum_probs=17.9

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.10  E-value=0.14  Score=43.58  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=25.4

Q ss_pred             EEEeCCCCCchhHHHHhHcC-----ccccCccE-----EEEcCEe
Q 009374          450 FCLLGPNGAGKTTTISCLTG-----ITPVTGGD-----ALIYGFS  484 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g-----~~~pt~G~-----i~i~g~~  484 (536)
                      +.|+|..|+||||+++-+++     .+.||.|.     +.++|.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~   51 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE   51 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccCCcccccccccccccccc
Confidence            67999999999999998753     23566654     3466654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.085  Score=49.58  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=27.6

Q ss_pred             EEEecCcEEEEeCCCCCchhHHHHhHcCccc
Q 009374          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       442 l~v~~gei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +.+-+||-.+|.|+.|+||||++.+++.-..
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            5688999999999999999999999987554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.077  Score=45.08  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=17.7

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            47999999999999997754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.00  E-value=0.081  Score=49.28  Aligned_cols=23  Identities=43%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             EEEEeCCCCCchhHHHHhH---cCcc
Q 009374          449 LFCLLGPNGAGKTTTISCL---TGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l---~g~~  471 (536)
                      .++++||-|+|||||...|   +|..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~   29 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAK   29 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCc
Confidence            4689999999999999988   5544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.072  Score=45.76  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.++|..|+|||||++.+.+-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578999999999999887754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.86  E-value=0.086  Score=46.13  Aligned_cols=20  Identities=25%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|+.|+|||||++.+++
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            68999999999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.83  E-value=0.08  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +||+|-.-+|||||+|.|||.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            6999999999999999999964

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.077  Score=45.39  Aligned_cols=20  Identities=25%  Similarity=0.551  Sum_probs=18.0

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      ++++|..|+||||+++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.44  E-value=0.11  Score=46.74  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             EEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       443 ~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .+++|+++-|.|++|+||||+.-.++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999999976665

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.34  E-value=0.11  Score=47.01  Aligned_cols=29  Identities=31%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G  476 (536)
                      ..+.|.||.|.||||+.+.++..++...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            46779999999999999999987754444

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.32  E-value=0.094  Score=49.03  Aligned_cols=24  Identities=33%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             EEEEeCCCCCchhHHHHhH---cCccc
Q 009374          449 LFCLLGPNGAGKTTTISCL---TGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l---~g~~~  472 (536)
                      -++++||.|||||||...|   +|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            3689999999999999988   45543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.06  E-value=0.1  Score=49.60  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=25.7

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEe
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFS  484 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~  484 (536)
                      ..+.|+||.|+|||.+.+.|+....  .--+.+++-+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~   84 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATK   84 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccc--cchhcccccc
Confidence            4556999999999999999998753  2234555433

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.97  E-value=0.12  Score=44.92  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=22.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc--cccCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI--TPVTGG  476 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~--~~pt~G  476 (536)
                      +.|||..|+||||+++.+.-.  ..||-|
T Consensus         5 ivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            579999999999999998432  357888

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.94  E-value=0.17  Score=43.62  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=21.2

Q ss_pred             EEEeCCCCCchhHHHHhH-cCc----cccCccEE
Q 009374          450 FCLLGPNGAGKTTTISCL-TGI----TPVTGGDA  478 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l-~g~----~~pt~G~i  478 (536)
                      +.++|..|+||||+++-+ .|-    ..||-|..
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~   38 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN   38 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCCceeec
Confidence            579999999999999755 443    34665543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.91  E-value=0.091  Score=44.97  Aligned_cols=20  Identities=20%  Similarity=0.400  Sum_probs=17.7

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+|||||++-+.+
T Consensus         9 v~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=87.70  E-value=0.11  Score=46.03  Aligned_cols=21  Identities=33%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +|++||-++|||||++.|++.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            689999999999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.68  E-value=0.09  Score=49.58  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=20.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +||+|...+|||||++.||+-
T Consensus        13 iGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999975

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.67  E-value=0.085  Score=45.14  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=8.3

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.++|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999986665

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=0.13  Score=43.74  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=17.8

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.++|..|+|||||++-+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57999999999999988873

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=87.56  E-value=0.12  Score=46.61  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=26.5

Q ss_pred             EEEeCCCCCchhHHHHhHcCccccCccEEEEcCEecC
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSIR  486 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i~  486 (536)
                      +-+-||.|+||||+.++++.......  +.++|.+..
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~~   72 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVLV   72 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTCC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCCc--ccccCcccc
Confidence            45889999999999999998876543  345565543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.27  E-value=0.12  Score=44.67  Aligned_cols=20  Identities=25%  Similarity=0.380  Sum_probs=17.9

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+|||||++.+.+
T Consensus         8 ivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987664

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.26  E-value=0.12  Score=46.47  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=17.3

Q ss_pred             EEEeCCCCCchhHHHHhHc
Q 009374          450 FCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~  468 (536)
                      +|++||-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999998883

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.22  E-value=0.13  Score=45.96  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=24.0

Q ss_pred             EEEeCCCCCchhHHHHhHcCccccC---ccEEEEcCEe
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPVT---GGDALIYGFS  484 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~pt---~G~i~i~g~~  484 (536)
                      +-|-||.|+||||+.++++..+...   ...+.++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~   76 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD   76 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccc
Confidence            4588999999999999987654322   2344555443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.12  Score=43.87  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=16.9

Q ss_pred             EEEeCCCCCchhHHHHhHc
Q 009374          450 FCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~  468 (536)
                      ++++|+.|+||||+++.+.
T Consensus         9 i~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6899999999999999653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=86.98  E-value=0.16  Score=46.90  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      .-+-|.||.|+|||++.+.|+.....  --+.+++.++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~~--~~~~i~~~~l   81 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAKV--PFFTISGSDF   81 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC--CEEEECSCSS
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcCC--CEEEEEhHHh
Confidence            34568899999999999999987642  2356666554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.95  E-value=0.13  Score=46.56  Aligned_cols=21  Identities=43%  Similarity=0.635  Sum_probs=18.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +-|.||.|+||||+.+.++-.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            569999999999999998764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=86.88  E-value=0.12  Score=46.57  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=24.2

Q ss_pred             EEeCCCCCchhHHHHhHcCccccCccEEEEcCEec
Q 009374          451 CLLGPNGAGKTTTISCLTGITPVTGGDALIYGFSI  485 (536)
Q Consensus       451 ~LlG~NGaGKSTll~~l~g~~~pt~G~i~i~g~~i  485 (536)
                      -|.||.|.||||+.+++++...-.  ....++.+.
T Consensus        39 Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~   71 (239)
T d1ixsb2          39 LLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAI   71 (239)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTC
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcc
Confidence            488999999999999999876432  234455443

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.15  Score=47.68  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCcc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -+++++|+-++|||||+|.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            478999999999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=0.16  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=18.7

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++||-|+.|||||||-+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999998876543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.45  E-value=0.14  Score=44.32  Aligned_cols=20  Identities=20%  Similarity=0.380  Sum_probs=17.7

Q ss_pred             EEEeCCCCCchhHHHHhHcC
Q 009374          450 FCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g  469 (536)
                      +.|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999988654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=0.15  Score=43.23  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~  470 (536)
                      +.++|..|+|||||++-+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            579999999999999987543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.16  E-value=0.12  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++.|.||.|.||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=85.88  E-value=0.15  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCcc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      -+||+|-.-+||||+++.||+--
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.74  E-value=0.18  Score=47.45  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             EEEeCCCCCchhHHHHhHcCccc-cC
Q 009374          450 FCLLGPNGAGKTTTISCLTGITP-VT  474 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~-pt  474 (536)
                      ++++|.-.|||||+++.|.|..- |+
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            68999999999999999999753 54

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.55  E-value=0.17  Score=45.00  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=19.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      +-|-||.|+||||+.++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            4588999999999999998754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.37  E-value=0.19  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             EEEeCCCCCchhHHHHhHcCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGIT  471 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~  471 (536)
                      ++++|.-.|||||+++.|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6799999999999999999965

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.12  E-value=0.35  Score=41.76  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      .++..-+ .-.|.-+.+.|++|+||||+.-.|.
T Consensus         4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            3444444 3456778899999999999865543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.93  E-value=0.23  Score=44.62  Aligned_cols=19  Identities=37%  Similarity=0.412  Sum_probs=17.5

Q ss_pred             EEEeCCCCCchhHHHHhHc
Q 009374          450 FCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~  468 (536)
                      ++++||-.+|||||++.|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6889999999999999993

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.17  Score=43.84  Aligned_cols=28  Identities=25%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             EEEeCCCCCchhHHHHhHcCc-----cccCccE
Q 009374          450 FCLLGPNGAGKTTTISCLTGI-----TPVTGGD  477 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~-----~~pt~G~  477 (536)
                      ++|+|..|+|||||++-+.+-     ..||-|.
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~   38 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD   38 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCCcCCceee
Confidence            689999999999999776533     3456554

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=84.34  E-value=0.37  Score=41.35  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=22.1

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHh
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISC  466 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~  466 (536)
                      .++...+ .-.|.-+.+.|++|+||||+.-.
T Consensus         5 ~~H~~~v-~~~g~gvli~G~sg~GKS~la~~   34 (169)
T d1ko7a2           5 SLHGVLV-DVYGVGVLITGDSGIGKSETALE   34 (169)
T ss_dssp             EEESEEE-EETTEEEEEEESTTSSHHHHHHH
T ss_pred             eEEEEEE-EECCEEEEEEeCCCCCHHHHHHH
Confidence            4555333 45678889999999999987644

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.26  E-value=0.25  Score=44.42  Aligned_cols=22  Identities=32%  Similarity=0.449  Sum_probs=19.5

Q ss_pred             cEEEEeCCCCCchhHHHHhHcC
Q 009374          448 QLFCLLGPNGAGKTTTISCLTG  469 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g  469 (536)
                      .++||.|.-||||||..++|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999853

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.08  E-value=0.22  Score=46.36  Aligned_cols=34  Identities=29%  Similarity=0.273  Sum_probs=28.0

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHcCc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~g~  470 (536)
                      |+|. =+.+-+||..+|.|+.|+||||++..++--
T Consensus        58 aID~-l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          58 VVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHH-HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eeee-eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4443 367899999999999999999998777644

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.07  E-value=0.19  Score=46.49  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             EEEEeCCCCCchhHHHHhHcCccc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      -+-|.||.|+|||++.+.+++...
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcchhHHHHHHHHhC
Confidence            366899999999999999999764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=83.76  E-value=0.14  Score=48.86  Aligned_cols=24  Identities=29%  Similarity=0.638  Sum_probs=21.6

Q ss_pred             EEEeCCCCCchhHHHHhHcCcccc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITPV  473 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~p  473 (536)
                      +-|.|+.|.||||+.+.++++++|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             EEEECCCCccHHHHHHHHHHhCCC
Confidence            568899999999999999998865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.71  E-value=0.23  Score=44.51  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      ...++=|.-||||||+++.|.--+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3567889999999999999986553

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.59  E-value=0.24  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             EEEeCCCCCchhHHHHhHcCccc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +-|.||.|+|||++.+.|+....
T Consensus        43 vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHhhccc
Confidence            45889999999999999998643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=83.59  E-value=0.29  Score=44.75  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             eeeceeEEEecCcEEEEeCCCCCchhHHHHhHc
Q 009374          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       436 al~~lsl~v~~gei~~LlG~NGaGKSTll~~l~  468 (536)
                      ++++    +.+|+++.|.|+.|+||||+.--|+
T Consensus        22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          22 VLPN----MVAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EETT----EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             HhCC----ccCCcEEEEEeCCCCCHHHHHHHHH
Confidence            5555    3469999999999999999986543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.57  E-value=0.26  Score=44.20  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=18.4

Q ss_pred             EEEEeCCCCCchhHHHHhHcCc
Q 009374          449 LFCLLGPNGAGKTTTISCLTGI  470 (536)
Q Consensus       449 i~~LlG~NGaGKSTll~~l~g~  470 (536)
                      ++.|-|.=|||||||++-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            5678899999999999988653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.32  Score=46.03  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             cEEEEeCCCCCchhHHHHhHcCccc
Q 009374          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       448 ei~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      .++.++||+|+|||.|.+.|+-.+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc
Confidence            3578999999999999999998763

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.08  E-value=0.25  Score=45.12  Aligned_cols=18  Identities=28%  Similarity=0.390  Sum_probs=17.0

Q ss_pred             EEEeCCCCCchhHHHHhH
Q 009374          450 FCLLGPNGAGKTTTISCL  467 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l  467 (536)
                      ++++||-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            689999999999999988

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.98  E-value=0.3  Score=41.92  Aligned_cols=27  Identities=37%  Similarity=0.428  Sum_probs=21.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCc---cccCcc
Q 009374          450 FCLLGPNGAGKTTTISCLTGI---TPVTGG  476 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~---~~pt~G  476 (536)
                      +.|||..|+||||+++-+...   ..||-|
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            579999999999999988544   345555

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.76  E-value=0.21  Score=40.11  Aligned_cols=21  Identities=33%  Similarity=0.254  Sum_probs=17.6

Q ss_pred             EecCcEEEEeCCCCCchhHHH
Q 009374          444 IAKDQLFCLLGPNGAGKTTTI  464 (536)
Q Consensus       444 v~~gei~~LlG~NGaGKSTll  464 (536)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            357899999999999999554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=81.66  E-value=0.28  Score=44.79  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.3

Q ss_pred             EEEeCCCCCchhHHHHhHcCccc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +-|.||.|+|||++.+.|+....
T Consensus        45 iLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEecCCCCChhHHHHHHHHHcC
Confidence            46899999999999999998664

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.36  E-value=0.29  Score=44.89  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEeCCCCCchhHHHHhHcCccc
Q 009374          450 FCLLGPNGAGKTTTISCLTGITP  472 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~g~~~  472 (536)
                      +-|.||.|+|||++.+.++....
T Consensus        41 iLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEecCCCCCchHHHHHHHHHhC
Confidence            56889999999999999999653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.34  E-value=0.34  Score=43.99  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=17.1

Q ss_pred             EEEeCCCCCchhHHHHhHc
Q 009374          450 FCLLGPNGAGKTTTISCLT  468 (536)
Q Consensus       450 ~~LlG~NGaGKSTll~~l~  468 (536)
                      ++++||-++|||||...|.
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5899999999999998883