Citrus Sinensis ID: 009409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccEEEEcccccccEEEEEcccccccccEEEEEcccccEEEEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHEHHHHHHccccHHHHEHEHHHHHHHHEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcHcHccccccccccccHHHHHcccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEEEEEEHHccHHHHccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAKLTLGAEKFFVFAhntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwknipqrykligTTSLAFVICNMDKVNLSVAIIpmshrfgwnssvaglvqssffwgyalsqlpggwlakifggrkvLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGigegvspsaaTDLIarsipleersRAVSFVFGGLsfgsvaglllappiienlgweSVFYIFGLLGIawfsgfkilqegetsngatlaprsnyINMKKSLSASLEEMGEslkdvpwkaIFRSKAVWAMIYAHFcgswghytclswlptyfseelslnlTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLssidlglphwEIVGILTAGLALSSFALsglycthqdispEYASILLGItntvgavpGIVGVALTGYLldsthswsmslfapSIFFYLTGTIVWLAFasskpqnfstrd
Flexible Loop (DISEMBL)
MAKLTLGAEKFFvfahntssgrlvfakrnsskrqkfhlypsegcsrlrvscsikekenvkeetdkfdevltglrvdepgsvsgfdsesgqvrgteevgrasywppwkniPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETsngatlaprsnYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAsskpqnfstrd
Low Complexity Region (SEG)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIltaglalssfalsglYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD
Disordered region (IsUnstruct)
*****LGAEKFFVFAHNTSSGRLVFA*********FHLYP**GCSRLRVS**********************************************VGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE********************************LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA***********
Disordered Region (DISOPRED)
********************************************************************************************************PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG*T*********************************PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNF****
Disordered Region (DISEMBL)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASS*********
Disordered Region (DISPRO)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKE****************************************GRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSA*L***GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
Q3E9A0	517	Probable anion transporte	yes	no	0.949	0.982	0.686	0.0
Q0IZQ3	471	Probable anion transporte	yes	no	0.665	0.755	0.739	1e-151
Q652N5	591	Probable anion transporte	no	no	0.863	0.781	0.378	5e-90
Q9SDI4	529	Probable anion transporte	no	no	0.764	0.773	0.412	2e-88
O82390	512	Sodium-dependent phosphat	no	no	0.803	0.839	0.387	7e-87
Q8GX78	541	Probable anion transporte	no	no	0.874	0.865	0.369	4e-85
Q8W0H5	519	Probable anion transporte	no	no	0.773	0.797	0.372	6e-63
Q7XJR2	512	Probable anion transporte	no	no	0.863	0.902	0.330	1e-62
Q53WP9	535	Probable anion transporte	no	no	0.751	0.751	0.340	6e-57
Q66GI9	533	Probable anion transporte	no	no	0.771	0.774	0.335	4e-56

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/543 (68%), Positives = 420/543 (77%), Gaps = 35/543 (6%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MA+LTL         HN      ++A +    S    F  +      + RV CS    E 
Sbjct: 1   MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53

Query: 59  VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
           V+E       D  ++    L + E  S               E G    WPPWKNIPQRY
Sbjct: 54  VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
           YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT VRKI
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKI 393

Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
           CQTIAF++PA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Query: 473 LGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFS 532
           LGITNTVGAVPGIVGVALTG+LLDSTHSW+MSLF PSIFFYLTGT+VWLAFASS+PQ F 
Sbjct: 454 LGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSEPQTFR 513

Query: 533 TRD 535
             D
Sbjct: 514 KED 516

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;5 PE=2 SV=2

 Score =  537 bits (1383), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 273/369 (73%), Positives = 307/369 (83%), Gaps = 13/369 (3%)

Query: 180 KVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR 239
           +VL+ GV+ WSLATA++P +AGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIP++ERSR
Sbjct: 99  RVLEIGVVAWSLATAIIPAVAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPVQERSR 158

Query: 240 AVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGAT 299
           AV+ VFGGLSFGSV GLL APPII+NLGWESVFYIFGLLGI W  GF+ L+E +      
Sbjct: 159 AVAVVFGGLSFGSVLGLLFAPPIIQNLGWESVFYIFGLLGIIWCLGFQSLKEQQLRGNED 218

Query: 300 LAPRSNY-------------INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
           +    +                  KS  +SL E+  SLKDVPW+  F+SKAVWAMIYAHF
Sbjct: 219 IQVIQDLGQSPSGSSDLISSSVSPKSSESSLGELMNSLKDVPWREFFKSKAVWAMIYAHF 278

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
           CGSWGHYTCLSWLPT+FSEEL LNLTEAAWVS+LPPL S+++TSIAA FADNLI+ GV+T
Sbjct: 279 CGSWGHYTCLSWLPTFFSEELDLNLTEAAWVSVLPPLGSMIITSIAAPFADNLISNGVDT 338

Query: 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISP 466
           T VRKICQTIAFLSPA  M LSS+DLG+P WEIV  LT+GLALSSFALSGLYCTHQDIS 
Sbjct: 339 TKVRKICQTIAFLSPATFMMLSSVDLGVPPWEIVAFLTSGLALSSFALSGLYCTHQDISR 398

Query: 467 EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASS 526
           EYASILLGITNTVGAVPGIVGVALTGYLLD+THSWS+SLFAPSIFFYLTGT VWLAFASS
Sbjct: 399 EYASILLGITNTVGAVPGIVGVALTGYLLDTTHSWSISLFAPSIFFYLTGTAVWLAFASS 458

Query: 527 KPQNFSTRD 535
           +PQ FS  +
Sbjct: 459 EPQEFSKSE 467

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  332 bits (850), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 184/486 (37%), Positives = 282/486 (58%), Gaps = 24/486 (4%)

Query: 43  GCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASY 102
            C +      ++ + + K E  +    +TG     P S S   +E+  +  T E+     
Sbjct: 125 ACVQPDYKIPVRTRADCKAEQYE----ITG----SPLSPSDVPAEAVLIGDTNEIS---- 172

Query: 103 WPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGY 162
            P W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  FGW+ +  GL+QSSFFWGY
Sbjct: 173 -PWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGY 231

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSP 221
            L+Q+ GG  A  FGG+ VL  GV+ WS+AT L PL A   +P L++ R  +GIGEGV+ 
Sbjct: 232 LLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAM 291

Query: 222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            A  +++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY FG LG  
Sbjct: 292 PAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGWPSVFYAFGSLGSV 351

Query: 282 WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM 341
           WF+    L + +  +  +  P  +    +  L  S   + E +  +PWK I     VWA+
Sbjct: 352 WFA----LWQRKAHSSPSEDPELSKAEKRYILGGS--TLKEPVTSIPWKLILSKPPVWAL 405

Query: 342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401
           I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I    AD L+ 
Sbjct: 406 IVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVG 465

Query: 402 TGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH 461
            GV  T VRKI Q+I FL PA+ +TL S  +  P   ++  +       +F+ SGLY  H
Sbjct: 466 RGVSITNVRKIMQSIGFLGPALFLTLLS-KVRTPAMAVL-CMACSQGSDAFSQSGLYSNH 523

Query: 462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWL 521
           QDI P YA +LLG++NT G + G+ G A TGY+L    SW  S+F  ++  Y+ GT+VW 
Sbjct: 524 QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQK-GSWD-SVFQVAVVLYIVGTVVWN 581

Query: 522 AFASSK 527
            F++ +
Sbjct: 582 VFSTGE 587

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  327 bits (837), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/422 (41%), Positives = 254/422 (60%), Gaps = 13/422 (3%)

Query: 108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQL 167
             P+R+ ++     AF++CNMD+VN+S+AI+PMS  FGWN    GL+QSSFFWGY L+Q+
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 168 PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATD 226
            GG  A   GG+ VL  GV+ WS+ATAL P  A   +P L+++R  +G+GEGV+  A  +
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 227 LIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGF 286
           ++++ +P+ ERSR+++ V+ G+  GSV GL  +P +I N GW SVFY FG LG+ WFS +
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
                        ++        +K L  S    GE +K++PW  I     VWA+I +HF
Sbjct: 295 ASKAYSSPLEDPGISAE------EKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHF 348

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
           C +WG +  L+W+PTY+++ L  NLTE+    +LP L   +  +     AD L++ G+  
Sbjct: 349 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSV 408

Query: 407 TMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS 465
           T VRKI Q+I FL PA  +T LS ID   P   ++  +       +F+ SGLY  HQDI 
Sbjct: 409 TTVRKIMQSIGFLGPAFFLTQLSHID--SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIG 465

Query: 466 PEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAS 525
           P YA +LLG++NT G + G+ G A TGY+L    SW   +F  S+  YL GT+VW  F++
Sbjct: 466 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWD-DVFKVSVVLYLVGTLVWNLFST 523

Query: 526 SK 527
            +
Sbjct: 524 GE 525

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  321 bits (823), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 173/447 (38%), Positives = 262/447 (58%), Gaps = 17/447 (3%)

Query: 87  ESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH 142
           E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+VN+S+AI+PMS 
Sbjct: 73  EGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSA 132

Query: 143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
            +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+AT L P+ A  
Sbjct: 133 EYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKL 192

Query: 203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
            +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  GSV GL  +P 
Sbjct: 193 GLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPF 252

Query: 262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
           +I   GW SVFY FG LG  W + +    E       TL P       ++ L A      
Sbjct: 253 LIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------ERKLIADNCASK 306

Query: 322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
           E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  NL E+  +S+ P
Sbjct: 307 EPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFP 366

Query: 382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIV 440
            +   +  +     AD L++ G   T VRKI QTI FL PA  +T L  ID   P   ++
Sbjct: 367 WMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHID--SPTMAVL 424

Query: 441 GILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS 500
             +       +F+ SGLY  HQDI+P Y+ +LLG++NT G + G++G A TG++L    S
Sbjct: 425 -CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHG-S 482

Query: 501 WSMSLFAPSIFFYLTGTIVWLAFASSK 527
           W   +F  S+  YL GT++W  F++ +
Sbjct: 483 WD-DVFTISVGLYLVGTVIWNLFSTGE 508

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  316 bits (809), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 186/503 (36%), Positives = 281/503 (55%), Gaps = 35/503 (6%)

Query: 37  HLYPSEGC-------SRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESG 89
           H+  S GC       S +R   SIK   +      +  ++  G+     GS     +E+ 
Sbjct: 58  HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITEGVVPSADGS-----AEAI 112

Query: 90  QVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS 149
            V G  +   AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+
Sbjct: 113 LVEGNLQ--NASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSA 168

Query: 150 VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVL 208
             GL+QSSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++
Sbjct: 169 TVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLV 228

Query: 209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268
            R  +GIGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW
Sbjct: 229 VRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGW 288

Query: 269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVP 328
            SVFY FG LG  WF  +         +   L+     + +  S      +  E +  +P
Sbjct: 289 PSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGS------KPREPVTVIP 342

Query: 329 WKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
           WK I     VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   + 
Sbjct: 343 WKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVF 402

Query: 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLA 448
            +I    AD L++ G+  T VRKI Q+I FL PA  ++       L H +   +    +A
Sbjct: 403 ANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLS------QLSHVKTPAMAVLCMA 456

Query: 449 LS----SFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMS 504
            S    +F+ SGLY  HQDI P YA +LLG++NT G + G+ G A TGY+L    SW   
Sbjct: 457 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWD-D 514

Query: 505 LFAPSIFFYLTGTIVWLAFASSK 527
           +F  ++  YL GT+VW  FA+ +
Sbjct: 515 VFKVAVALYLIGTLVWNLFATGE 537

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  242 bits (617), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 160/429 (37%), Positives = 227/429 (52%), Gaps = 15/429 (3%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K+     LA  +CN D+V +SVAI+P+S  +GW  S AG+VQSSF WGY +S + GG
Sbjct: 96  ERVKVAAMLGLALALCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGG 155

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDLIA 229
            L   +GG++V+  GV +WSLAT L P  A     L LS RVL+G+ EGV+  +  +++ 
Sbjct: 156 ALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVL 215

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERS AV     G   G+  GLLL+P I+   G    F IFGL G  W   +   
Sbjct: 216 RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISA 275

Query: 290 QEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSK-AVWAMIYAHFC 347
             G     A ++    +YI   + L  + +  GE L+ VP  +   SK   WA+I A+  
Sbjct: 276 ISGTPGENAQISAHELDYITRGQKLVKT-QSGGERLRKVPPFSKLLSKWPTWALISANAM 334

Query: 348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETT 407
            SWG++  LSW+P YF     +NL EAAW S LP +   ++  +A   +D LI  G   T
Sbjct: 335 HSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSIT 394

Query: 408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI----LTAGLALSSFALSGLYCTHQD 463
           + RKI QTI F+ P V +      LGL   +   I    LT  + L SF  SG     Q+
Sbjct: 395 LTRKIMQTIGFVGPGVAL------LGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQE 448

Query: 464 ISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAF 523
           I+P+YA +L G++NT G    I+G    G+ +D   S+   L   S+  Y + T+ W  F
Sbjct: 449 IAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSL-LYFSSTLFWDIF 507

Query: 524 ASSKPQNFS 532
           A+ +  +F 
Sbjct: 508 ATGERVDFD 516

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 257/512 (50%), Gaps = 50/512 (9%)

Query: 26  AKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFD 85
           A++N  + +    Y SE   + R + +  +K N   E    + VLTG          G  
Sbjct: 38  ARKNQIRCENLR-YSSESDGKRRNAAA--KKRNQSPERCAAEGVLTG----------GGG 84

Query: 86  SES-GQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF 144
           SE+  +VR                +P+R K++  T+    +CN D+V +SVA++P++ + 
Sbjct: 85  SEAIAEVR--------------TMMPERIKVVILTACMMCLCNADRVVMSVAVVPLADKL 130

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204
           GW+SS  G+VQSSF WGY  S + GG L   +GG++VL  GV +WSLAT L P  A    
Sbjct: 131 GWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHST 190

Query: 205 -GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII 263
             L+  R   G+ EGV+  + T L++R  P++ER+ AV     G   G+V GLLL P ++
Sbjct: 191 LALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLML 250

Query: 264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE- 322
            ++G    F +F  LG+ W S +        S+G T  P+ +    +  L   L + G+ 
Sbjct: 251 SSIGISGPFILFASLGLLWVSTW--------SSGVTNNPQDSPFITRSEL--RLIQAGKP 300

Query: 323 ------SLKDVPWKAIFRSK-AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
                 S K  P   +  SK   WA+I+A+   +WG++  LSW+P YF    ++NL +AA
Sbjct: 301 VQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAA 360

Query: 376 WVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP 435
           W S LP     +    A   +D LI TG   T VRKI Q+I F+ P   ++L  ++    
Sbjct: 361 WFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPG--LSLLCLNFAKS 418

Query: 436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL 495
                  +T  L+LSSF+ +G     QDI+P+YA  L GI+N  G +  IV    TGY +
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFV 478

Query: 496 DSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK 527
               S+  +    + F Y   T+ WL FA+ +
Sbjct: 479 QWLGSFQ-AFLTVTAFLYFATTVFWLLFATGE 509

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 145/426 (34%), Positives = 224/426 (52%), Gaps = 24/426 (5%)

Query: 109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
           +P+R K++   +   ++CN D+V +SVA++P + ++GW+SS  G+VQSSF WGY  S + 
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS-RVLVGIGEGVSPSAATDL 227
           GG LA  +GG+KV+     +WSLAT L P  A     ++L+ R L G+ EGV+    +  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
           + +  P  ER+ AV    GG   G+V   L  P I+ ++G    F  F  LG  W S + 
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 288 ILQEGETSNGATLAPRS-NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
              E +  +  T++      I   +S S        SL++     I     +WA+I A+ 
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLRE-----ILSKIEMWAIIVANV 353

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
             +WG++  LSW+P YF    ++NL +AAW S +P     L   +A   AD LI +G   
Sbjct: 354 VNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSV 413

Query: 407 TMVRKICQTIAFLSPAV---CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD 463
            +VRKI Q+I F+ P V   C+  +      P    V ++T  L+LSSF+ +G +C  QD
Sbjct: 414 ALVRKIMQSIGFIGPGVSLLCLRFAQT----PSVAAV-LMTIALSLSSFSQAGYFCNVQD 468

Query: 464 ISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL-------FAPSIFF--YL 514
           I+P+YA  L G+TN +G V  IV    TGY +    S+   L       F+ ++F+  Y 
Sbjct: 469 IAPKYAGSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYA 528

Query: 515 TGTIVW 520
           TG +++
Sbjct: 529 TGDLIF 534

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  219 bits (558), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 223/432 (51%), Gaps = 19/432 (4%)

Query: 111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGG 170
           +R K++   +LA  +CN D+V +SVAI+P+S   GW+ S +G+VQSSF WGY +S + GG
Sbjct: 110 ERVKVVAMLALALALCNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGG 169

Query: 171 WLAKIFGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
            L   +GG+ V+  GV +WSLAT L P  A   +  L+ +R +VG+ EGV+     +++A
Sbjct: 170 TLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVA 229

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289
           R  P  ERSRAV     G   G+V GL+L+P ++   G    F IFGL G  W     ++
Sbjct: 230 RWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWL----LV 285

Query: 290 QEGETSNGATLAPRSN-----YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA 344
               TS+     P+       YI  KK +S    +   +    P+  +      WA+I A
Sbjct: 286 WLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVA 345

Query: 345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
           +   SWG +  LSW+P YF+    +NL +AAW S +P         IA  ++D LI  G 
Sbjct: 346 NSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGT 405

Query: 405 ETTMVRKICQTIAFLSPAVC---MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH 461
             T+ RKI Q+I F+ P +    +T +   L    W     L+  + L SF+  G     
Sbjct: 406 SITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAW-----LSLAVGLKSFSHLGFLINL 460

Query: 462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWL 521
           Q+I+PEY+ +L G+  T G +  IVG    G+ ++   S+   +   +I  YL   + + 
Sbjct: 461 QEIAPEYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAI-LYLLSALFYN 519

Query: 522 AFASSKPQNFST 533
            +A+ +  +F T
Sbjct: 520 IYATGERVDFDT 531

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
255586001	533	Inner membrane transport protein yjjL, p	0.983	0.986	0.756	0.0
224120476	543	predicted protein [Populus trichocarpa]	0.998	0.983	0.755	0.0
359484723	526	PREDICTED: probable anion transporter 6,	0.983	1.0	0.747	0.0
224144091	535	predicted protein [Populus trichocarpa]	0.988	0.988	0.737	0.0
356546138	525	PREDICTED: probable anion transporter 6,	0.968	0.986	0.710	0.0
356562936	524	PREDICTED: probable anion transporter 6,	0.962	0.982	0.717	0.0
449443273	538	PREDICTED: probable anion transporter 6,	0.900	0.895	0.742	0.0
357478369	541	hypothetical protein MTR_4g116030 [Medic	0.921	0.911	0.712	0.0
297812223	517	hypothetical protein ARALYDRAFT_910078 [	0.949	0.982	0.690	0.0
42567984	517	putative anion transporter 6 [Arabidopsi	0.949	0.982	0.686	0.0

>gi|255586001|ref|XP_002533670.1| Inner membrane transport protein yjjL, putative [Ricinus communis] gi|223526438|gb|EEF28716.1| Inner membrane transport protein yjjL, putative [Ricinus communis]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/542 (75%), Positives = 457/542 (84%), Gaps = 16/542 (2%)

Query: 1   MAKLTLGAEKF--FVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MAK TL   K   F F  N ++    F   +  K +  HL PS+   + RV CS+KEKEN
Sbjct: 1   MAKFTLINNKADNFCFLSNNTNTHASFFNNSCLKFKNSHLIPSKRILKFRVLCSVKEKEN 60

Query: 59  VKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           VKE +++ +EV++GLRV+   + G   G DS      G +EVG    WPPWKNIPQRYKL
Sbjct: 61  VKE-SERVNEVVSGLRVEGLKQTGLQLGNDS------GLQEVGFDWNWPPWKNIPQRYKL 113

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S+AGLVQSSFFWGYALSQLPGGWL+KI
Sbjct: 114 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASMAGLVQSSFFWGYALSQLPGGWLSKI 173

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVL+ GVL+WSLATA +PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR IPLE
Sbjct: 174 FGGRKVLKIGVLVWSLATAFVPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARLIPLE 233

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSVAGLLLAPP+I+  GWESVFYIFG LGIAWF  F+ L+E ++S
Sbjct: 234 ERSRAVAFVFGGLSVGSVAGLLLAPPLIQIFGWESVFYIFGFLGIAWFLTFQFLEEEQSS 293

Query: 296 N--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
              G T +P+S Y  ++KS + SL E+  SLKDVPWKA F ++AVWAMIYAHFCGSWGHY
Sbjct: 294 FAIGPTASPQSTY--LEKSWNTSLPELSSSLKDVPWKAFFETRAVWAMIYAHFCGSWGHY 351

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC 413
           TCLSWLP+YFSEEL+LNLTEAAWVSILPPLASV VTSIAAQFADNLIA GVETT VRKIC
Sbjct: 352 TCLSWLPSYFSEELNLNLTEAAWVSILPPLASVFVTSIAAQFADNLIANGVETTTVRKIC 411

Query: 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           QT+AFLSPAVCMTLSS+DLGLP WEIVGIL+ GLALSSFALSGLYCTHQDISPEYASILL
Sbjct: 412 QTVAFLSPAVCMTLSSVDLGLPPWEIVGILSGGLALSSFALSGLYCTHQDISPEYASILL 471

Query: 474 GITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFST 533
           GITNT GA+PGIVGVALTGYLLD+THSWS+SLFAPSIFFYLTGT+VWLA ASSKPQNFS 
Sbjct: 472 GITNTAGAIPGIVGVALTGYLLDTTHSWSLSLFAPSIFFYLTGTVVWLALASSKPQNFSK 531

Query: 534 RD 535
           R 
Sbjct: 532 RS 533

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120476|ref|XP_002331057.1| predicted protein [Populus trichocarpa] gi|222872987|gb|EEF10118.1| predicted protein [Populus trichocarpa]

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/544 (75%), Positives = 448/544 (82%), Gaps = 10/544 (1%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA  T  AE F   +H+T++   +     S K     L  S+     RV C IKEKENV 
Sbjct: 1   MANFTFKAENFSSLSHHTNTQTSLLNTTTSFKTNSLRLLHSKNSLTFRVWCGIKEKENVT 60

Query: 61  EETDKFDEVLTG-LRVDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
             +++  +VLTG  RVDE     GS   F+ + G   G+ EVG    WPPWKNIPQRYKL
Sbjct: 61  G-SERVPDVLTGPKRVDELDPKRGSSLDFEQKLGNDSGSSEVGFDWNWPPWKNIPQRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIAR----S 231
           FGGRKVL+ GVL WS+ATALLP LAG+MPGLVLSRVLVGIGEGVSPSAATDLIAR    S
Sbjct: 180 FGGRKVLKFGVLTWSVATALLPFLAGYMPGLVLSRVLVGIGEGVSPSAATDLIARHTLMS 239

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE 291
           IPLEERSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+E
Sbjct: 240 IPLEERSRAVAFVFGGLSVGSVIGLLLAPPLIQNFGWASVFYIFGFLGLAWFLGFQYLEE 299

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
           G+ S+ A  A R   I+M+KS S SL  +G SLKDVPWKA FR+ AVWAMIYAHFCGSWG
Sbjct: 300 GQASHSAKPASRPQSIHMEKSFSNSLAALGGSLKDVPWKAFFRTPAVWAMIYAHFCGSWG 359

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK 411
           HY CLSWLP+YFSEELSLNLTEAAWVSILPPLASV VTS AAQ ADNLIA GVETT VRK
Sbjct: 360 HYNCLSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSFAAQLADNLIANGVETTTVRK 419

Query: 412 ICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASI 471
           ICQTIAFLSPA+CMTLSS+DLGLP WEIVGILT GLALSSFALSGLYCTHQD+SPEYASI
Sbjct: 420 ICQTIAFLSPALCMTLSSVDLGLPPWEIVGILTCGLALSSFALSGLYCTHQDMSPEYASI 479

Query: 472 LLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNF 531
           LLGITNTVGA+PGIVGVALTGYLLD+THSWS+SLFAPSIFFYLTGTIVWLAFASSKPQNF
Sbjct: 480 LLGITNTVGAIPGIVGVALTGYLLDTTHSWSISLFAPSIFFYLTGTIVWLAFASSKPQNF 539

Query: 532 STRD 535
           S  D
Sbjct: 540 SNTD 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484723|ref|XP_002263200.2| PREDICTED: probable anion transporter 6, chloroplastic-like [Vitis vinifera]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/535 (74%), Positives = 449/535 (83%), Gaps = 9/535 (1%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MAK     E    F  +T+S         S K ++  ++ S+  S+LRV  +I+ KE+V 
Sbjct: 1   MAKFAFTTENICCFPRHTNS----LFNNTSLKHRQLLIFSSKQRSQLRVFSAIRGKESVT 56

Query: 61  EETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTS 120
           E     + V+TGLRVDE  + S   S++       EVG    WPPWKN+PQRYKLIGTTS
Sbjct: 57  ET----ESVITGLRVDELDN-SASASDAEGQEEGGEVGFDWNWPPWKNLPQRYKLIGTTS 111

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           LAFV+CNMDKVNLSVAIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGRK
Sbjct: 112 LAFVVCNMDKVNLSVAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 171

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL+ GVL WSLATAL+P+LAGFMPGLVLSR+LVGIGEGVSPSAATDLIARSIPLEERSRA
Sbjct: 172 VLEIGVLTWSLATALVPVLAGFMPGLVLSRILVGIGEGVSPSAATDLIARSIPLEERSRA 231

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           V+FVFGGLS GSV GLLLAPP+I+N GWE+VFYIFG+LGIAWF GF+ ++E + S  A L
Sbjct: 232 VAFVFGGLSVGSVTGLLLAPPLIQNFGWEAVFYIFGILGIAWFLGFQFVKEEQPSFVADL 291

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
            P S  I+ KKSL+ SL+++  SLKDVPWKA F+++AVWAMIY HFCGSWGHYTCLSWLP
Sbjct: 292 IPWSRTISSKKSLNTSLKDLDASLKDVPWKAFFQTRAVWAMIYTHFCGSWGHYTCLSWLP 351

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420
           TYFSEEL+LNLTEAAWVS+LPPLAS+ VT+IA+Q ADNLIA GVETT VRKICQTIAFLS
Sbjct: 352 TYFSEELNLNLTEAAWVSVLPPLASIFVTTIASQLADNLIANGVETTTVRKICQTIAFLS 411

Query: 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 480
           PAVCMTLSS+DLG+P WEIVGILT GLALSSFALSGLYCTHQDISPEYASILLGITNTVG
Sbjct: 412 PAVCMTLSSLDLGIPPWEIVGILTGGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 471

Query: 481 AVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
           AVPGIVGVALTG LLDSTHSWS+SLFAPSIFFYLTGTIVWLAFASSKPQ+FS  D
Sbjct: 472 AVPGIVGVALTGSLLDSTHSWSLSLFAPSIFFYLTGTIVWLAFASSKPQSFSKID 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144091|ref|XP_002325183.1| predicted protein [Populus trichocarpa] gi|222866617|gb|EEF03748.1| predicted protein [Populus trichocarpa]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/541 (73%), Positives = 438/541 (80%), Gaps = 12/541 (2%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA LTL A+ F   +HNT++   VF    S K    +   S    + RV C +KEKENVK
Sbjct: 1   MANLTLKAKSFCSLSHNTNTQTSVFKTTTSFKNNSLNFLHSGNSLKFRVWCGVKEKENVK 60

Query: 61  EETDKFDEVLTGLR-VDE----PGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
           E  ++  +VL GL+  DE     GS   F+   G   G+ EVG    WPPWKNIP RYKL
Sbjct: 61  EG-ERVPDVLAGLKKADELDPKRGSSLDFEQRLGDDSGSSEVGFDWKWPPWKNIPLRYKL 119

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLSVAIIPMSH+FGWN+S AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 120 IGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKI 179

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGGRKVLQ GVL WS+ATALLP LAG+MPG VLSRVLVGIGEGVSPSAATDLIAR     
Sbjct: 180 FGGRKVLQIGVLTWSVATALLPFLAGYMPGFVLSRVLVGIGEGVSPSAATDLIAR----- 234

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
            RSRAV+FVFGGLS GSV GLLLAPP+I+N GW SVFYIFG LG+AWF GF+ L+EG+ S
Sbjct: 235 HRSRAVAFVFGGLSVGSVTGLLLAPPLIQNFGWASVFYIFGFLGVAWFLGFQYLEEGQAS 294

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
             A    RS  I  +KS S +L E+G SLKDVPWKA F++ AVWAMIYAHFCGSWGHYTC
Sbjct: 295 FAAKPTSRSQTIYSEKSSSNALAELGGSLKDVPWKAFFQTPAVWAMIYAHFCGSWGHYTC 354

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415
           LSWLP+YFSEELSLNLTEAAWVSILPPLASV VTSIAAQ AD LI+ GVE T VRKICQT
Sbjct: 355 LSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSIAAQLADKLISNGVEITTVRKICQT 414

Query: 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSG-LYCTHQDISPEYASILLG 474
           IAFLSPA+CMTLSS+DLGLP WEIVGILTAGLALSSFALSG LYCTHQD+SPEYASILLG
Sbjct: 415 IAFLSPALCMTLSSVDLGLPPWEIVGILTAGLALSSFALSGRLYCTHQDMSPEYASILLG 474

Query: 475 ITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTR 534
           ITNTVGA+PGIVG+ LTGYLLD+THSWS++LF PSIFFYLTGTIVWLAFASSKP NFS  
Sbjct: 475 ITNTVGAIPGIVGIPLTGYLLDTTHSWSIALFVPSIFFYLTGTIVWLAFASSKPTNFSNT 534

Query: 535 D 535
           D
Sbjct: 535 D 535

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546138|ref|XP_003541488.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/542 (71%), Positives = 442/542 (81%), Gaps = 24/542 (4%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCSIKEKENVK 60
           MA+LTL  +    F+H   +       R +S  Q+FH + S     LR+S  +   +   
Sbjct: 1   MARLTLRPDNSCFFSHTQRANSHTPFTRTTS-FQRFHFHLSSSNHTLRLSRIVSSAQQNA 59

Query: 61  EETDKFD------EVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYK 114
           +ET +        +VLT L+V+E             V    E   +  WPPWKN+PQRYK
Sbjct: 60  KETQRVSMAKAKAKVLTDLQVEE-------------VEKQHET-LSWNWPPWKNLPQRYK 105

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           LIGTTSLAF+ICNMDKVNLS+AIIPMSH+FGWNSS AGLVQSSFFWGYALSQLPGGWLAK
Sbjct: 106 LIGTTSLAFIICNMDKVNLSIAIIPMSHQFGWNSSTAGLVQSSFFWGYALSQLPGGWLAK 165

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234
           IFGG  VL+ GVLIWS+ATAL+P LAG+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPL
Sbjct: 166 IFGGGAVLEVGVLIWSVATALVPFLAGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPL 225

Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET 294
           EERSRAV+ VFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET
Sbjct: 226 EERSRAVALVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGET 285

Query: 295 S-NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY 353
             N  +L+   +   M +S   SL E+  SLKDVPWKA F+++AVWAMIYAHFCGSWGHY
Sbjct: 286 QLNAESLSSAQDI--MTQSWKTSLRELNGSLKDVPWKAFFQNRAVWAMIYAHFCGSWGHY 343

Query: 354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKIC 413
            CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VTS+AAQ ADNLI+ GVETT+VRKIC
Sbjct: 344 NCLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTSLAAQLADNLISRGVETTVVRKIC 403

Query: 414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL 473
           Q+IAFLSPA+CMTLSS+DLGLP WEIVGILT+GLALSSFALSGLYCTHQD+SPEYASILL
Sbjct: 404 QSIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILL 463

Query: 474 GITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFST 533
           GITNTVGA+PGIVGVALTGYLLDSTHSWS+SLFAPSIFFY+TGTI+WLAFASSKPQ+FS 
Sbjct: 464 GITNTVGAIPGIVGVALTGYLLDSTHSWSISLFAPSIFFYVTGTIIWLAFASSKPQSFSE 523

Query: 534 RD 535
           ++
Sbjct: 524 QN 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562936|ref|XP_003549724.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/538 (71%), Positives = 439/538 (81%), Gaps = 23/538 (4%)

Query: 1   MAKLTLGAEKFFVFAH-NTSSGRLVFAKRNSSKRQKFHLYPSEGCSRLRVSCS----IKE 55
           MA+LTL  +    F+H   +     F +  S +R  FHL PS    RLR+  S     KE
Sbjct: 1   MARLTLRPDNSCFFSHIQRAYSHTPFTRTTSFQRFHFHLSPSNHTLRLRIVSSSQQNAKE 60

Query: 56  KENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRYKL 115
            + V     K  +VLT L+V+E                 +    +  WPPWKN+PQRYKL
Sbjct: 61  TQRVSMAKAK-AKVLTDLQVEE--------------MEKQHETLSWNWPPWKNLPQRYKL 105

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           IGTTSLAFVICNMDKVNLS+AIIPMSH+FGWNS+ AGLVQSSFFWGYALSQLPGGWLAKI
Sbjct: 106 IGTTSLAFVICNMDKVNLSIAIIPMSHQFGWNSTTAGLVQSSFFWGYALSQLPGGWLAKI 165

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FGG  VL+ GVLIWS+ATA +P ++G+MPGL+LSRVLVGIGEGVSPSAATDLIARSIPLE
Sbjct: 166 FGGGTVLEVGVLIWSVATAFVPFISGYMPGLLLSRVLVGIGEGVSPSAATDLIARSIPLE 225

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ERSRAV+FVFGGLS GSV GLLLAPP+I+NLGWESVFYIFGLLGIAWF GF++L+ GET 
Sbjct: 226 ERSRAVAFVFGGLSVGSVMGLLLAPPLIQNLGWESVFYIFGLLGIAWFLGFQVLEGGETQ 285

Query: 296 -NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT 354
            N  +L+  S+   M +S   SL E+  SLK+VPWKA F+++AVWAMIYAHFCGSWGHY 
Sbjct: 286 LNAESLS--SDQDTMTQSWKTSLRELNGSLKEVPWKAFFQNRAVWAMIYAHFCGSWGHYN 343

Query: 355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414
           CLSWLPT+FSEEL+LNLTEAAWVSILPPLAS+ VT +AAQ ADNLI+ GVE T+VRKICQ
Sbjct: 344 CLSWLPTFFSEELNLNLTEAAWVSILPPLASIFVTGLAAQLADNLISRGVEATVVRKICQ 403

Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLG 474
           +IAFLSPA+CMTLSS+DLGLP WEIVGILT+GLALSSFALSGLYCTHQD+SPEYASILLG
Sbjct: 404 SIAFLSPAICMTLSSLDLGLPPWEIVGILTSGLALSSFALSGLYCTHQDMSPEYASILLG 463

Query: 475 ITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFS 532
           ITNTVGAVPGIVGVALTGYLLDSTHSWS+SLFAPSIFFY+TGTIVWLAFASSKPQ+FS
Sbjct: 464 ITNTVGAVPGIVGVALTGYLLDSTHSWSISLFAPSIFFYVTGTIVWLAFASSKPQSFS 521

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443273|ref|XP_004139404.1| PREDICTED: probable anion transporter 6, chloroplastic-like [Cucumis sativus]

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/505 (74%), Positives = 423/505 (83%), Gaps = 23/505 (4%)

Query: 47  LRVSCSIKEKENVKEETDKFDEVLTGLRVD---EPGSVSGFDSESGQVRGTEEVGRASYW 103
           LRV CSIKEKENVK   D    VL+GLRVD     GSVS  +++     G +EVG    W
Sbjct: 41  LRVCCSIKEKENVKGNED-ISPVLSGLRVDASERSGSVSKSENDLSSGHGIDEVGSNLNW 99

Query: 104 PPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYA 163
           PPW+N+P RYKLIGTT+LAFVICNMDKVNLSVAIIPMSH+FGWNSSVAGLVQSSFFWGYA
Sbjct: 100 PPWRNVPDRYKLIGTTALAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYA 159

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
           +SQLPGGWLAKIFGGRKVL+ GVL WSLATAL+P LAG+MPGL+ SRVLVGIGEGVSPSA
Sbjct: 160 MSQLPGGWLAKIFGGRKVLEIGVLTWSLATALVPFLAGYMPGLIFSRVLVGIGEGVSPSA 219

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF 283
           ATDLIARSIPL+ERSRAV+FVFGGLS GSV+GLLL+P +I+N GWESVFYIFG LGIAWF
Sbjct: 220 ATDLIARSIPLQERSRAVAFVFGGLSVGSVSGLLLSPSLIQNFGWESVFYIFGFLGIAWF 279

Query: 284 SGFKILQ-------------EGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           +GF+ L              E E+ + + L  + +    K      L+++  +LK+VPW+
Sbjct: 280 AGFQFLDGQSSGPLKSISVVESESDSDSVLPKKKSTTPFK------LQQLPAALKEVPWR 333

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390
           A      VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL+LNLTEAAWVSILPPLAS+ VTS
Sbjct: 334 AFLEYPPVWAMIYAHFCGSWGHYTCLSWLPTYFSEELNLNLTEAAWVSILPPLASIFVTS 393

Query: 391 IAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALS 450
           IA+Q ADNLI+ GV+TT VRKICQT+AF+SPAVCMTLSS+DLGLP WE+VGILT+GLALS
Sbjct: 394 IASQLADNLISNGVDTTKVRKICQTVAFVSPAVCMTLSSVDLGLPPWEVVGILTSGLALS 453

Query: 451 SFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSI 510
           SFALSGLYCTHQDISPEYAS+LLGITNTVGA+PGIVGVALTG+LLDSTHSWS+SLFAPSI
Sbjct: 454 SFALSGLYCTHQDISPEYASVLLGITNTVGAIPGIVGVALTGFLLDSTHSWSISLFAPSI 513

Query: 511 FFYLTGTIVWLAFASSKPQNFSTRD 535
           FFYLTGTIVWL FASSKP+NFS  D
Sbjct: 514 FFYLTGTIVWLVFASSKPKNFSKND 538

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478369|ref|XP_003609470.1| hypothetical protein MTR_4g116030 [Medicago truncatula] gi|355510525|gb|AES91667.1| hypothetical protein MTR_4g116030 [Medicago truncatula]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/522 (71%), Positives = 421/522 (80%), Gaps = 29/522 (5%)

Query: 28  RNSSKRQKFHLYPSEGCSRLR----VSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSG 83
           + + +R  FH  PS+   R +    VSCS   ++++KE  +K  +       D    V  
Sbjct: 35  KTTFQRFHFHFTPSKLIHRTKQRTVVSCS-NTQQDIKETHNKLSKTKINALSDLDDDVEL 93

Query: 84  FDSESGQVRGTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHR 143
               SG             WP WKN+P RYKLIGTTSLAFVICNMDKVNLS+AIIPMSH+
Sbjct: 94  EQHLSGN------------WPSWKNLPLRYKLIGTTSLAFVICNMDKVNLSIAIIPMSHQ 141

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           FGWNSS AGLVQSSFFWGYALSQLPGGWLAKIFGGR VL  GVLIWS+ATAL+P LAG+M
Sbjct: 142 FGWNSSTAGLVQSSFFWGYALSQLPGGWLAKIFGGRNVLVVGVLIWSVATALVPFLAGYM 201

Query: 204 PGLVLSRVLVGIGEGVSPSAATDLIAR---------SIPLEERSRAVSFVFGGLSFGSVA 254
           PGL+L+R+LVGIGEGVSPSAATDLIAR         SIPLEERSRAV+FVFGGLS GSV 
Sbjct: 202 PGLILTRILVGIGEGVSPSAATDLIARHVNIQIHFWSIPLEERSRAVAFVFGGLSVGSVL 261

Query: 255 GLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYINMKKSL 313
           GLL APP+I+++GWESVFYIFGLLGIAWF GF+ L+EGET   A + +P     NM +S 
Sbjct: 262 GLLFAPPLIQSIGWESVFYIFGLLGIAWFIGFQFLEEGETRLAAESFSPAQG--NMTQSW 319

Query: 314 SASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE 373
             SL+EM  SLKDVPWKA F+S+AVWAMIYAHFCGSWGHYTCLSWLPTYFS+EL LNLTE
Sbjct: 320 QTSLKEMNSSLKDVPWKAFFQSRAVWAMIYAHFCGSWGHYTCLSWLPTYFSQELDLNLTE 379

Query: 374 AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433
           AAWVSILPPLAS+ VTSIA+Q AD+LI+ GVETT VRKICQ+IAFLSPA+CMTL+S+DLG
Sbjct: 380 AAWVSILPPLASIFVTSIASQLADSLISKGVETTTVRKICQSIAFLSPALCMTLASLDLG 439

Query: 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY 493
           LP WE+VG+LT GLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY
Sbjct: 440 LPPWEMVGLLTGGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY 499

Query: 494 LLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
           LLD THSWS+SL+APSIFFYL+GT VWL FASSKPQ+FS  +
Sbjct: 500 LLDMTHSWSISLYAPSIFFYLSGTAVWLVFASSKPQSFSEEN 541

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812223|ref|XP_002873995.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata] gi|297319832|gb|EFH50254.1| hypothetical protein ARALYDRAFT_910078 [Arabidopsis lyrata subsp. lyrata]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/543 (69%), Positives = 426/543 (78%), Gaps = 35/543 (6%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNSSKRQKF----HLYPSEGCSRL---RVSCSI 53
           MA+LTL     F            F+    + +Q F     ++P    + L   RV CS 
Sbjct: 1   MARLTLRPHNHF------------FSSPIHAHKQPFLSVYTIFPHHHHNPLIKSRVKCSA 48

Query: 54  KEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
              E V+E      ++     +++P  +        +V  TE  G    WPPWKNIPQRY
Sbjct: 49  SGTERVRES----KKLPPKDPIEDPKPLLPIP----EVLSTE-TGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYI-NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I N  KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISNSHKSENATKEELGSSLKEIPWKSFFQSSAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
           YTCLSWLPTYFSE L+LNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GVETT VRKI
Sbjct: 334 YTCLSWLPTYFSEALNLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVETTTVRKI 393

Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
           CQTIAF+SPA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVSPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Query: 473 LGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFS 532
           LGITNTVGAVPGIVGVALTG+LLDSTHSW+MSLF PSIFFYLTGT+VWLAFASS+PQ F+
Sbjct: 454 LGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSEPQTFT 513

Query: 533 TRD 535
             D
Sbjct: 514 KED 516

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567984|ref|NP_197538.2| putative anion transporter 6 [Arabidopsis thaliana] gi|122214318|sp|Q3E9A0.1|ANTR6_ARATH RecName: Full=Probable anion transporter 6, chloroplastic; AltName: Full=Phosphate transporter PHT4;5; Flags: Precursor gi|332005454|gb|AED92837.1| putative anion transporter 6 [Arabidopsis thaliana]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/543 (68%), Positives = 420/543 (77%), Gaps = 35/543 (6%)

Query: 1   MAKLTLGAEKFFVFAHNTSSGRLVFAKRNS--SKRQKFHLYPSEGCSRLRVSCSIKEKEN 58
           MA+LTL         HN      ++A +    S    F  +      + RV CS    E 
Sbjct: 1   MARLTLRP-------HNHFFSSPIYAHKQPFLSVYTIFPHHHQNPLIKSRVKCSASGTER 53

Query: 59  VKEET-----DKFDEVLTGLRVDEPGSVSGFDSESGQVRGTEEVGRASYWPPWKNIPQRY 113
           V+E       D  ++    L + E  S               E G    WPPWKNIPQRY
Sbjct: 54  VRESKKLPPKDPIEDPKPQLPIPEVLST--------------ETGFEQNWPPWKNIPQRY 99

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           KLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQSSFFWGYALSQLPGGWL+
Sbjct: 100 KLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLS 159

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
           KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGIGEGVSPSAATDLIAR+IP
Sbjct: 160 KIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGIGEGVSPSAATDLIARTIP 219

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE 293
           ++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+FGLLG+ WF GF+ L E E
Sbjct: 220 VKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQFLNEEE 279

Query: 294 TSNGATLAPRSNYINM-KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352
            S       + N I+   KS +A+ EE+G SLK++PWK+ F+S AVWAMIY HFCGSWGH
Sbjct: 280 VSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGH 333

Query: 353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI 412
           YTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+QFAD LI  GV+TT VRKI
Sbjct: 334 YTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKI 393

Query: 413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 472
           CQTIAF++PA+CMTLSS+D+GLP WEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL
Sbjct: 394 CQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Query: 473 LGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFS 532
           LGITNTVGAVPGIVGVALTG+LLDSTHSW+MSLF PSIFFYLTGT+VWLAFASS+PQ F 
Sbjct: 454 LGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSEPQTFR 513

Query: 533 TRD 535
             D
Sbjct: 514 KED 516

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.811	0.839	0.764	4.5e-185
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.824	0.861	0.373	2.7e-86
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.893	0.883	0.361	1.3e-82
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.768	0.802	0.340	7.1e-61
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.723	0.781	0.328	1.8e-54
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.723	0.781	0.333	4.8e-54
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.721	0.779	0.327	1.3e-53
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.721	0.776	0.325	1.6e-53
RGD|1311388	495	Slc17a5 "solute carrier family	0.721	0.779	0.322	3.3e-53
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.721	0.779	0.319	2.3e-52

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1795 (636.9 bits), Expect = 4.5e-185, P = 4.5e-185
 Identities = 337/441 (76%), Positives = 374/441 (84%)

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
             E G    WPPWKNIPQRYKLIG TSLAFVICNMDKVNLS+AIIPMSH+FGW+SSVAGLVQ
Sbjct:    82 ETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSVAGLVQ 141

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGI 215
             SSFFWGYALSQLPGGWL+KIFGGRKVL+ GV  WS ATAL+PLLAGFMPGL+ SR+LVGI
Sbjct:   142 SSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGFMPGLIFSRILVGI 201

Query:   216 GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF 275
             GEGVSPSAATDLIAR+IP++ERSRAV FVFGGLS GSV GLLLAPPIIE   WESVFY+F
Sbjct:   202 GEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLF 261

Query:   276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK-KSLSASLEEMGESLKDVPWKAIFR 334
             GLLG+ WF GF+ L E E S       + N I+   KS +A+ EE+G SLK++PWK+ F+
Sbjct:   262 GLLGVGWFVGFQFLNEEEVSY------KGNEISTSHKSENATKEELGSSLKEIPWKSFFQ 315

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
             S AVWAMIY HFCGSWGHYTCLSWLPTYFSE LSLNLTEAAWVSILPPLAS++VTS+A+Q
Sbjct:   316 SPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375

Query:   395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXX 454
             FAD LI  GV+TT VRKICQTIAF++PA+CMTLSS+D+GLP WEIVGI            
Sbjct:   376 FADYLITNGVDTTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFAL 435

Query:   455 XXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL 514
                YCTHQDISPEYASILLGITNTVGAVPGIVGVALTG+LLDSTHSW+MSLF PSIFFYL
Sbjct:   436 SGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYL 495

Query:   515 TGTIVWLAFASSKPQNFSTRD 535
             TGT+VWLAFASS+PQ F   D
Sbjct:   496 TGTVVWLAFASSEPQTFRKED 516

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
 Identities = 171/458 (37%), Positives = 261/458 (56%)

Query:    76 DEPGSVSGFDSESGQVRGTEEVGRAS----YWPPWKNIPQRYKLIGTTSLAFVICNMDKV 131
             D+  S + +  E  +V G  +V   S      P W+  P+R+ ++     AF++CNMD+V
Sbjct:    62 DKSESSNSYYVEGDKVSGNNDVVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRV 121

Query:   132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
             N+S+AI+PMS  +GWN +  GL+QSSFFWGY L+Q+ GG  A   GG++VL  GV+ WS+
Sbjct:   122 NMSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSI 181

Query:   192 ATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF 250
             AT L P+ A   +P L++ R  +G+GEGV+  A  +++++ +P++ERSR+++ V+ G+  
Sbjct:   182 ATILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYL 241

Query:   251 GSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK 310
             GSV GL  +P +I   GW SVFY FG LG  W + +    E       TL P       +
Sbjct:   242 GSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPE------E 295

Query:   311 KSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLN 370
             + L A      E +K +PW+ I     VWA+I  HFC +WG +  L+W+PTY+ + L  N
Sbjct:   296 RKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFN 355

Query:   371 LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LSS 429
             L E+  +S+ P +   +  +     AD L++ G   T VRKI QTI FL PA  +T L  
Sbjct:   356 LMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKH 415

Query:   430 IDLGLPHWEIVGIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVA 489
             ID   P   ++ +               Y  HQDI+P Y+ +LLG++NT G + G++G A
Sbjct:   416 IDS--PTMAVLCMACSQGTDAFSQSGL-YSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTA 472

Query:   490 LTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK 527
              TG++L    SW   +F  S+  YL GT++W  F++ +
Sbjct:   473 ATGHILQHG-SWD-DVFTISVGLYLVGTVIWNLFSTGE 508

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 178/493 (36%), Positives = 271/493 (54%)

Query:    37 HLYPSEGCS-RLRVSCSIKEKENVKEETDKFDEVLTGLRVDEPGSVSGFDSESGQVRGTE 95
             H+  S GC  + R+   I+ + ++K    +         + E G V   D  +  +    
Sbjct:    58 HMRRSFGCFLQPRMDSVIRFRNSIKINRSRAYYKSEESDITE-GVVPSADGSAEAILVEG 116

Query:    96 EVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ 155
              +  AS W  W+  P+R+ ++     +F++CNMD+VN+S+AI+PMS  + W+S+  GL+Q
Sbjct:   117 NLQNASPW--WQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSATVGLIQ 174

Query:   156 SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVG 214
             SSFFWGY L+Q+ GG  A  FGG+ VL  GV+ WS AT + P+ A   +P L++ R  +G
Sbjct:   175 SSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMG 234

Query:   215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI 274
             IGEGV+  A  +++++ IP+ ERSR+++ V+ G+  GSV GL  +P +I   GW SVFY 
Sbjct:   235 IGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYS 294

Query:   275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
             FG LG  WF  +         +   L+        K  L  S     E +  +PWK I  
Sbjct:   295 FGSLGSIWFLLWLKFAYSSPKDDPDLSEEEK----KVILGGSKPR--EPVTVIPWKLILS 348

Query:   335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ 394
                VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+  + +LP L   +  +I   
Sbjct:   349 KPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGW 408

Query:   395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXX 454
              AD L++ G+  T VRKI Q+I FL PA  ++  S  +  P   ++ +            
Sbjct:   409 IADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLS-HVKTPAMAVLCMACSQGSDAFSQS 467

Query:   455 XXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL 514
                Y  HQDI P YA +LLG++NT G + G+ G A TGY+L    SW   +F  ++  YL
Sbjct:   468 GL-YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWD-DVFKVAVALYL 524

Query:   515 TGTIVWLAFASSK 527
              GT+VW  FA+ +
Sbjct:   525 IGTLVWNLFATGE 537

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 144/423 (34%), Positives = 217/423 (51%)

Query:   109 IPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLP 168
             +P+R K++  T+    +CN D+V +SVA++P++ + GW+SS  G+VQSSF WGY  S + 
Sbjct:    95 MPERIKVVILTACMMCLCNADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVI 154

Query:   169 GGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP-GLVLSRVLVGIGEGVSPSAATDL 227
             GG L   +GG++VL  GV +WSLAT L P  A      L+  R   G+ EGV+  + T L
Sbjct:   155 GGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTL 214

Query:   228 IARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK 287
             ++R  P++ER+ AV     G   G+V GLLL P ++ ++G    F +F  LG+ W S + 
Sbjct:   215 LSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWS 274

Query:   288 ILQEGETSN--GATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA-VWAMIYA 344
                 G T+N   +    RS  + + ++    ++    S K  P   +  SK   WA+I+A
Sbjct:   275 ---SGVTNNPQDSPFITRSE-LRLIQA-GKPVQPSTISPKPNPSLRLLLSKLPTWAIIFA 329

Query:   345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404
             +   +WG++  LSW+P YF    ++NL +AAW S LP     +    A   +D LI TG 
Sbjct:   330 NVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGH 389

Query:   405 ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGIXXXXXXXXXXXXXXXYCTHQDI 464
               T VRKI Q+I F+ P + +   +     P    V                     QDI
Sbjct:   390 SVTSVRKIMQSIGFMGPGLSLLCLNFAKS-PSCAAV-FMTIALSLSSFSQAGFLLNMQDI 447

Query:   465 SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA 524
             +P+YA  L GI+N  G +  IV    TGY +    S+   L   + F Y   T+ WL FA
Sbjct:   448 APQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTA-FLYFATTVFWLLFA 506

Query:   525 SSK 527
             + +
Sbjct:   507 TGE 509

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 533 (192.7 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 130/396 (32%), Positives = 198/396 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  GVL  ++ T   PL A F
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G LV  R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FGL+GI WF  +  L         T+ P       K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S +P
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
              L   L   ++ Q ADNL A     T  VR++   I  + PA+ +  +   +G  +   V
Sbjct:   335 YLGCWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL-DSTH 499
                                 H DI+P YA ILLGITNT   +PG++G  +   L  ++T 
Sbjct:   394 AFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIARSLTPENTI 453

Query:   500 SWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
                 ++F  +    + G I +  FA  + QN++  D
Sbjct:   454 GEWQTVFCIAAAINVFGAIFFTLFAKGEVQNWAISD 489

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 530 (191.6 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
 Identities = 132/396 (33%), Positives = 199/396 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADL 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY FG +GI WF    +L     S+      R ++   K+ + +SL    
Sbjct:   220 ICYYMNWTYVFYFFGTIGIFWF----LLWIWLVSDTPQKHKRISHYE-KEYILSSLRNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
              L S L   ++ Q ADNL A     T  VR+I   I  + PAV +  +   +G  +   V
Sbjct:   335 YLGSWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL-DSTH 499
                                 H DI+P YA ILLGITNT   +PG+VG  +   L  D+T 
Sbjct:   394 AFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTV 453

Query:   500 SWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
                 ++F  +    + G I +  FA  + QN++  D
Sbjct:   454 GEWQTVFYIAAAINVFGAIFFTLFAKGEVQNWALND 489

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 526 (190.2 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 130/397 (32%), Positives = 200/397 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             R+ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   P+ A F
Sbjct:   100 RYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
               G L++ R L G+GEGV+  A   + +   P  ERS+ +S  + G   G+V  L L+  
Sbjct:   160 GVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FG++GI WF  +  L         T++ +      K+ + +SL+   
Sbjct:   220 ICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQE-----KEYILSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E   +S LP
Sbjct:   275 SSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALP 334

Query:   382 PLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
                  L   ++ Q ADNL A     T  VR++   I  + PAV +  +   +G  +   V
Sbjct:   335 YFGCWLCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL-DST- 498
                                 H DI+P YA ILLGITNT   +PG+VG  +   L  D+T 
Sbjct:   394 VFLTISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTI 453

Query:   499 HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
               W  ++F  +    + G I +  FA  + QN++  D
Sbjct:   454 REWQ-TVFYIAAAINVFGAIFFSLFAKGEVQNWALDD 489

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 525 (189.9 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 130/399 (32%), Positives = 199/399 (49%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ WN+   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  S+ T L PL A F
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:   203 MPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLA 259
               G L+  R L G+GEGV+  A   + +   P  ERS+  ++S+   G   G+V  L L+
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   260 PPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEE 319
               I   L W  VFY+FGL+GI WF  +  L         T++P       K+ + +SL  
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYE-----KEYILSSLRN 274

Query:   320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSI 379
                S K VPW  + +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S 
Sbjct:   275 QLSSQKSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSA 334

Query:   380 LPPLASVLVTSIAAQFADNLIAT-GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE 438
             +P     +   ++ Q ADNL A     T  VR++   I    PAV +  +   +G  +  
Sbjct:   335 VPYFGCWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGF-IGCDYSL 393

Query:   439 IVGIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL-DS 497
              V                   +H DI+P YA ILLGITNT   +PG++G  +   L  ++
Sbjct:   394 AVAFLTISTTLGGFCSSGFSISHLDIAPSYAGILLGITNTFATIPGMIGPVIARSLTPEN 453

Query:   498 T-HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
             T   W  ++F  +    + G I +  F   + Q ++  D
Sbjct:   454 TIREWQ-TVFCIAAALNVFGAIFFTLFGKGEVQGWAVSD 491

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 524 (189.5 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 128/397 (32%), Positives = 200/397 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  ++ T   PL A  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAADL 159

Query:   203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
              +  L++ R L G+GEGV+  A   + +   P  ERS+ ++  + G   G+V  L L+  
Sbjct:   160 GVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FGL+GI WF  +  +         T+   S+Y   K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTI---SHY--EKEYIVSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW +I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALP 334

Query:   382 PLASVLVTSIAAQFADNL-IATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
                  L   +  Q AD L +     T  VR+I   I  + PAV +  +   +G  +   V
Sbjct:   335 YFGCWLCMIVCGQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL-DST- 498
                                 H DI+P YA ILLGITNT   +PG++G  +   L  D+T 
Sbjct:   394 AFLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIAKSLTPDNTI 453

Query:   499 HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
               W  ++F  +    + G I +  FA  + QN++  D
Sbjct:   454 KEWQ-TVFCIAAAINVFGAIFFTLFAKGEVQNWALSD 489

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 516 (186.7 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 127/397 (31%), Positives = 199/397 (50%)

Query:   143 RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF 202
             ++ W++   G +  SFF+GY ++Q+PGG++A   GG+ +L  G+L  S+ T   PL A  
Sbjct:   100 KYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADL 159

Query:   203 -MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP 261
              +  LV+ R L G+GEGV+  A   + +   P  ERS+ ++  + G   G+V  L L+  
Sbjct:   160 GVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG 321
             I   + W  VFY+FG++GI WF  +  +         T+   S+Y   K+ + +SL+   
Sbjct:   220 ICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTI---SHY--EKEYIVSSLKNQL 274

Query:   322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILP 381
              S K VPW +I +S  +WA++ AHF  +W  YT L+ LPTY  E L  N+ E  ++S LP
Sbjct:   275 SSQKVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALP 334

Query:   382 PLASVLVTSIAAQFADNL-IATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
                  L   +  Q AD L +     T  VR+I   +  + PAV +  +   +G  +   V
Sbjct:   335 YFGCWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGF-IGCDYSLAV 393

Query:   441 GIXXXXXXXXXXXXXXXYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL-DST- 498
                                 H DI+P YA ILLGITNT   +PG+ G  +   L  D+T 
Sbjct:   394 AFLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMTGPIIAKSLTPDNTI 453

Query:   499 HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
               W  ++F  +    + G I +  FA  + Q+++  D
Sbjct:   454 REWQ-TVFCIAAAINVFGAIFFTLFAKGEVQSWALSD 489

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E9A0	ANTR6_ARATH	No assigned EC number	0.6869	0.9495	0.9825	yes	no
Q0IZQ3	PHT45_ORYSJ	No assigned EC number	0.7398	0.6654	0.7558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_602135.1 annotation not avaliable (517 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	535
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	5e-53
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-39
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-38
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-33
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-20
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	5e-17
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-13
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-12
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	5e-12
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	9e-11
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	8e-10
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	9e-08
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	3e-07
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-06
PRK03699	394	PRK03699, PRK03699, putative transporter; Provisio	4e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	6e-06
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	1e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-05
TIGR00896	355	TIGR00896, CynX, cyanate transporter	4e-05
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-05
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	1e-04
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-04
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	1e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	2e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-04
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	3e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-04
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	4e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	6e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	0.002
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	0.002
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	0.002
PRK03633	381	PRK03633, PRK03633, putative MFS family transporte	0.003
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  186 bits (474), Expect = 5e-53
 Identities = 111/392 (28%), Positives = 190/392 (48%), Gaps = 13/392 (3%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFM 203
           F W+ ++ GL+ SS F+G  + Q+P G+LA  +  +  +  G+ + S+ + ++P  AG  
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 204 PGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI 262
             LV+  RV+ G+ +G    A   +I +  P +ERSR +     G   G+   L ++  +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 263 IE-NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASL-EEM 320
            E   GW  +FY+FG++G AW   + +    + S    ++        KK +++SL  + 
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-----KFEKKYINSSLQGQK 245

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL 380
           G + + +P KAI +S  VWA+ +A F   W +    ++LPT+ S  L ++  E   +S L
Sbjct: 246 GSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSL 305

Query: 381 PPLASVLVTSIAAQFADNLIATGV-ETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI 439
           P L + L +  A   AD L ++     T  RKI   I  L P +        L    +  
Sbjct: 306 PYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY-LSAAFYLT 364

Query: 440 VGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL--DS 497
           + ILT   A+SS  L+G+     D++P +   + GIT   G + G++   L G +L  DS
Sbjct: 365 IIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS 424

Query: 498 THSWSMSLFAPSIFFYLTGTIVWLAFASSKPQ 529
            + W +       F  +   I +L F S++ Q
Sbjct: 425 KNVWLIVFLI-MAFVNILCVIFYLIFGSAERQ 455

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  146 bits (371), Expect = 4e-39
 Identities = 100/404 (24%), Positives = 170/404 (42%), Gaps = 10/404 (2%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           L  VI  +D+ NLS A   +    G +++  G V S+F WGY + Q PGGWL   FG RK
Sbjct: 1   LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
            L   ++IW + T L      +   L + RVL+G  E         ++A   P  ER+ A
Sbjct: 61  TLAVFIVIWGVFTGLQAFAGAY-VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGAT 299
           VS        G + G  L   I+ +  W+  F I G+LGI W     K + +        
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-W 178

Query: 300 LAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
           L     YI +   L+    +   + K    K + + + VW +    F  + G    L+W 
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL 419
           PTY  +E  L++ EA +++ LP +   +   +  + +D L+  G      RK   T    
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK---TAIIA 295

Query: 420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH-QDISPEYASIL-LGITN 477
              + + + + +     +  + ++   L         +      D +P   + L  G+ N
Sbjct: 296 GLVLSLLMFATNYVNIPYAALALVA--LGFFGLGAGAIGWALISDNAPGNIAGLTGGLIN 353

Query: 478 TVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWL 521
           ++G + GIVG  + G +  +T S++ +L   +    +      L
Sbjct: 354 SLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  142 bits (359), Expect = 7e-38
 Identities = 105/408 (25%), Positives = 169/408 (41%), Gaps = 56/408 (13%)

Query: 116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI 175
           +    L F +  +D+  LS A+  ++   G ++S AGL+ S+F  GYAL  L  G+L+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           FG R+VL  G+L+++L + LL   +     L++ R L+G+G G    AA  LIA   P +
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSL-WLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           ER RA+     G   G++ G LL   + E+LGW  +F I  +LG+               
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA------------ 167

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                                          +    + R   +  +  A F  S+G+Y  
Sbjct: 168 -------------------------------LLLLFLLR--LLLLLALAFFLLSFGYYGL 194

Query: 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT 415
           L++LP Y  E L L+  EA  +  L  L  +L   +    +D L          R++   
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLL 246

Query: 416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI 475
           I  L  A+ + L ++        +V +L  G  L     + L    +   PE      G+
Sbjct: 247 IGLLLAALGLLLLAL-APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGL 305

Query: 476 TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAF 523
            NT G++ G +G  L G LLD T  +       +    L   ++ L  
Sbjct: 306 FNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  128 bits (323), Expect = 6e-33
 Identities = 82/367 (22%), Positives = 134/367 (36%), Gaps = 25/367 (6%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
            AF+      +      + ++   G + +  GL+ ++F  GYAL+Q   G L+  FG R+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA 240
           VL  G+L+++L   LL   +     L++ RVL G+G G    AA  LIA   P EER RA
Sbjct: 64  VLLIGLLLFALGLLLLLFASSL-WLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 241 VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATL 300
           +  +  G   G+  G LL   +    GW + F I  +L +       +L           
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL----------- 171

Query: 301 APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLP 360
                                     VP   +     V  ++ A     +  +  L++LP
Sbjct: 172 -----LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLP 226

Query: 361 TYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS 420
            Y  E L L+   A  +  L  L   +   +  + +D L   G    ++      +  L 
Sbjct: 227 LY-QEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL---GRRRRLLL----ALLLLI 278

Query: 421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG 480
            A              W +V +L  G        +           E      G+ NT G
Sbjct: 279 LAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAG 338

Query: 481 AVPGIVG 487
           ++ G +G
Sbjct: 339 SLGGALG 345

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 91.3 bits (227), Expect = 8e-20
 Identities = 101/408 (24%), Positives = 151/408 (37%), Gaps = 36/408 (8%)

Query: 107 KNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYA 163
           K    RY+      L+F+I  MD  +L+            +G +    G + S+   G A
Sbjct: 8   KQPLSRYQWR-AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMA 66

Query: 164 LSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA 223
              L  G LA   G R+VL   +L++S+ T L   LA  +  L++ R L G+G G     
Sbjct: 67  FGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALATNVTQLLILRFLAGLGLGGLMPN 125

Query: 224 ATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI--A 281
              L++   P   R  AV  +F G   G+  G  LA  +I   GW S+FY+ G+  +   
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185

Query: 282 WFSGF------KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-- 333
                        L         T+    N I  +    A      +       +++F  
Sbjct: 186 LLLMRFLPESIDFLVS---KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKA 242

Query: 334 -----RSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388
                 ++    +   +F    G Y   +WLP     EL  +L+ AA    L     V+ 
Sbjct: 243 LFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIG 301

Query: 389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLA 448
           + I    AD L   G   T +  +    A  +  V  TL S  L L    I G    G  
Sbjct: 302 SIIFGWLADRL---GPRVTAL--LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNG-- 354

Query: 449 LSSFALSGLYCTHQDISPEYA-SILLGITNTVGAVPGIVGVALTGYLL 495
                 SGLY       P    +  +G    +G +  I+G  L GYLL
Sbjct: 355 ----GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 75/397 (18%), Positives = 135/397 (34%), Gaps = 38/397 (9%)

Query: 121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK 180
           + +    + + N ++A+  +    G + +  GL+ SSF   Y +S+   G ++     R 
Sbjct: 2   IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV 61

Query: 181 VLQTGVLIWSLATALLPLLAGFMPGL---VLSRVLVGIGEGVSPSAATDLIARSIPLEER 237
            L  G+++ ++      L  GF   L        L GI +G+        + +     ER
Sbjct: 62  FLPIGLILCAIVN----LFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSER 117

Query: 238 SRAVSFVFGGLSFGSVAGLLLAPPII-----ENLGWESVFYIFGLLGIAW-FSGFKILQE 291
              VSF     +     G  L PP++     E   W  VF + G++ I      F +L++
Sbjct: 118 GTWVSF----WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173

Query: 292 GETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG 351
              S G  L P     N +    A  +E   + K +  + +  +K +W +   +      
Sbjct: 174 SPQSCG--LPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV 231

Query: 352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-ATGVETTMVR 410
               L W P Y ++E   +  +A+W   L  L  ++ T +A   +D L         +  
Sbjct: 232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF 291

Query: 411 KICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYAS 470
                ++ L   +    +          I       L      L G+            +
Sbjct: 292 MALIIVSLLVYWLNPAAN-----PLMDLICLFALGFLVYGPQMLIGV-----------IA 335

Query: 471 ILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFA 507
             L      G   G VG     YL        +   A
Sbjct: 336 SELAPKKAAGTAAGFVG--FFAYLGGILAGLPLGYLA 370

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 158 FFWGYALSQL----PGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLV 213
              GYAL QL      G L   FG + VL  G+ I+ L+TA+   L+  +  L+++R L 
Sbjct: 3   LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALSSNITVLIIARFLQ 61

Query: 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY 273
           G G   +  A   LIA   P EER  A+  +  G++ G + G  L   + + LGW + F 
Sbjct: 62  GFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFL 121

Query: 274 IFGLLGIAWF-SGFKILQE 291
              +L +A F     +L E
Sbjct: 122 FLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 74/394 (18%), Positives = 143/394 (36%), Gaps = 40/394 (10%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P++   G +   AG + +++  G AL       L      R++L   + ++ ++  L  L
Sbjct: 38  PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
              F   L+L+R L G+  GV  S A  L AR +P  +R RA++ VF GL+  +V G+ L
Sbjct: 98  APSFAV-LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156

Query: 259 APPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLE 318
              + +  GW + F    +L +                   L P         SL   L 
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALLAL----------LLLWKLLPPSEI----SGSLPGPLR 202

Query: 319 EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS 378
            +           + R   V   + A F    GH+   +++  +       +++  + V 
Sbjct: 203 TLL---------RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL 253

Query: 379 ILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWE 438
           +   +A  +   +  + AD            R+       L     + L+          
Sbjct: 254 LAFGIAGFIGNLLGGRLAD---------RGPRRALIAALLLLALALLALTF----TGASP 300

Query: 439 IVGILTAGLALSSF--ALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD 496
            + +    L   +F  AL GL      ++P+ A +   +      +   +G AL G +LD
Sbjct: 301 ALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLD 360

Query: 497 STHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQN 530
           +   ++ + +  +    L   +  L+    +   
Sbjct: 361 AL-GYAATGWVGAALLLLALLLALLSARKDRRTA 393

Length = 394

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 94/411 (22%), Positives = 154/411 (37%), Gaps = 52/411 (12%)

Query: 132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191
           N ++A+  +    G + +  G++ S+F   Y +S+   G L+     R  +  G+++   
Sbjct: 47  NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL--- 103

Query: 192 ATALLPLLAGFMPGLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFV-- 244
            +A++ +L GF P L L  VL  +     G G  P A T  I      +ER    S    
Sbjct: 104 -SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART--ITHWFSRKERGTWWSIWNT 160

Query: 245 ---FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKILQEGETSNGATL 300
               GG     VA L        + GW + FY  G++ I        +L++   S G  L
Sbjct: 161 SHNIGGALAPLVALLAF---FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG--L 215

Query: 301 APRSNYIN-MKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL 359
            P   Y     +      E  G +   +  K + ++K +W +  A+       Y    W 
Sbjct: 216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275

Query: 360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-----ATGVETTMVRKICQ 414
           P Y SE    +L +A W   L  +A +  T +A   +D L         +   ++     
Sbjct: 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335

Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLG 474
            + +L+P     L +I L      I+G L  G  +    L GL     +  P+ A     
Sbjct: 336 VLYWLAPNGSYLLDAILLF-----IIGFLIYGPQM----LIGLAAA--EFVPKKA----- 379

Query: 475 ITNTVGAVPGIVGVALTGYLL-DSTHSWSMSLFAPSIFFYLTGTIVWLAFA 524
                G   G VG  L  YL+  +     +   A   + +  G IV    A
Sbjct: 380 ----AGTATGFVG--LFAYLIGAALAGLPLGYIA-DTWGWDGGFIVLSIAA 423

Length = 448

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 63.4 bits (155), Expect = 9e-11
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 24/173 (13%)

Query: 118 TTSLAFVICNMDKVNLS---VAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           T  L F++  ++ ++L    VA   M+  FG + +  G   S+   G     L GG LA 
Sbjct: 16  TIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD 75

Query: 175 IFGGRKVLQTGVL---IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA-- 229
             G +++L   V    ++SLATA     A   P L+++R+L G+G G    A  +LIA  
Sbjct: 76  RIGRKRILIVSVALFGLFSLATAQ----AWDFPSLLVARLLTGVGLG---GALPNLIALT 128

Query: 230 -RSIPLEERSRAVSFVFGGLSFG----SVAGLLLAPPIIENLGWESVFYIFGL 277
             ++    R  AVS ++ G+ FG    SV G+L A     +  W  +FY+ G+
Sbjct: 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA----GDAAWRHIFYVGGV 177

Length = 406

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 60.9 bits (148), Expect = 8e-10
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 2/178 (1%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L     L   +  +D   ++VAI  ++   G + S    V +S+    A+S    GWLAK
Sbjct: 3   LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK 62

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL 234
            FG R++       ++L + LL  +A  +  +++ RV+ G G G     +   +    P 
Sbjct: 63  RFGTRRLFLISTFAFTLGS-LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP 121

Query: 235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF-SGFKILQE 291
           E+R RA++     +      G  L   IIEN  W  +F I   +GI      F IL  
Sbjct: 122 EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR 179

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 84/415 (20%), Positives = 152/415 (36%), Gaps = 40/415 (9%)

Query: 119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG 178
           ++LAF +  M     S   + +   FG +    GL+ +      AL +LP G+L   FGG
Sbjct: 19  STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGG 78

Query: 179 RKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIGEGVSPSAATDLIARSIPLE 235
           RK     +L+  +    L   A   P    L++  +L+G+  G S +      +   P +
Sbjct: 79  RKWTILSMLLLLIPCLGL-AFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFP-K 135

Query: 236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS 295
           E+      + G  + G     L+AP +    G+ +   + G+  +A      +   G   
Sbjct: 136 EKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195

Query: 296 NGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355
                A                            KA+F +K  W +   +F  ++G +  
Sbjct: 196 VPEHRASVK------------------PQLPAQLKAVFSNKDTWLLSLLYF-ATFGGFVG 236

Query: 356 LS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ 414
            S +LP Y   +  L+   A  ++ L PL   L   +    +D +   G   T+      
Sbjct: 237 FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRRVTLAV---- 290

Query: 415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYC--THQDIS---PEYA 469
              F+  A+   L S+ L         ++   + L+ F  +GL      + I    P+  
Sbjct: 291 ---FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKET 347

Query: 470 SILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA 524
             + GI   +G + G       G  LD T S++ +      F+ +   + W  +A
Sbjct: 348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402

Length = 417

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 75/395 (18%), Positives = 136/395 (34%), Gaps = 47/395 (11%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLV 207
           A L+Q +FF GY +  LP G L K  G +  +  G+L++++  AL         +   LV
Sbjct: 50  ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLV 109

Query: 208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-----FGGLSFGSVAGLLLAPPI 262
              +L   G G+  +AA   +      E  +  ++        G +    +   L+   +
Sbjct: 110 ALFIL-ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV 168

Query: 263 IENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK--SLSASLEEM 320
              +    +  I G    +    + IL          L   +  I + K   L  +   +
Sbjct: 169 ALTMSAAQILAIKGADASSVQFPYLIL-------AGLLVLLAVLILLSKLPDLQVAAPSL 221

Query: 321 GESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSIL 380
           G S       ++F++K +   + A F          S+L +Y  E L LN  +AA+    
Sbjct: 222 GASGSAGL-SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYY--- 277

Query: 381 PPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIV 440
             L+   V  +  +F  + + + ++          IA L       +  +          
Sbjct: 278 --LSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV---------- 325

Query: 441 GILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA--VPGIVGVA----LTGYL 494
            +    L L     S ++ T   I       L   T+      V  IVG A    L G +
Sbjct: 326 -VALYALFLIGLFNSIMFPT---IFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPLQGVI 381

Query: 495 LDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQ 529
            D        L  P + +     +++ A    K +
Sbjct: 382 ADMFGIQLTFLIVPLLCYLY---VLFFALIGKKSK 413

Length = 422

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 25/213 (11%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           ++      +S+  +  + +  G+A  QL  G L+  +G R VL  G+ I++L+ +L   L
Sbjct: 31  IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS-SLGLAL 89

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLL 258
           +  +  L++ R +   G   + S  +  + R I P EE SR  S +   L+       LL
Sbjct: 90  SNNIETLLVLRFVQAFG-ASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL 148

Query: 259 APPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLE 318
              I+  L W ++F    L GI   +               + P +     +  +S   E
Sbjct: 149 GGYILVWLSWHAIFAFLSLAGILLSALI-----------FFILPETLPYEARIQISTYFE 197

Query: 319 EMGESLKDVPWKAIFRSKAVW--AMIYAHFCGS 349
                        + +SK  W  A+IY    G 
Sbjct: 198 TFL---------LLLKSKMFWGYALIYGASFGG 221

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 52/221 (23%)

Query: 169 GGWLAKIFGGRKVLQTG---VLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAAT 225
             WL +I   ++ L  G   +++          LA F     ++  ++G+  G++ S  T
Sbjct: 62  NAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFS----IAMFVLGVVSGITMSIGT 117

Query: 226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------ENLGWESVFYIFGLLG 279
            LI      E + R    +F   SF S+AG++   PII       ++ W  V+   GL+ 
Sbjct: 118 FLITHV--YEGKQRGSRLLFTD-SFFSMAGMIF--PIIAAYLLARSIEWYWVYACIGLVY 172

Query: 280 -----IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFR 334
                +  FS F  L +                        + E+ G             
Sbjct: 173 VAIFILTLFSEFPALGKHAPKADK---------------PVAKEKWGIG----------- 206

Query: 335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA 375
              V  +  A         T +SW+P Y  ++  ++L +A 
Sbjct: 207 ---VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG 244

Length = 394

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 52/279 (18%), Positives = 88/279 (31%), Gaps = 25/279 (8%)

Query: 163 ALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPS 222
           A+ ++  G+L   FG R      +L+ ++      L       L+L R+ +GI  G S +
Sbjct: 51  AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFA 109

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL------------GWES 270
           +    I+   P + +  A+    G  + G      + PPII +L            GW  
Sbjct: 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169

Query: 271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK 330
           V       GI       I        GA   P            A       +L D    
Sbjct: 170 V---IVPAGILLLPALLIF-----FVGADTPPGKPATGKLSFKGARWSVGTGALGDQ--L 219

Query: 331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA-AWVSILPPLASVLVT 389
            +FR +  W +   +           S    +F ++  L+   A A+ S+   L   L  
Sbjct: 220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLG-GLLGSLAR 278

Query: 390 SIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS 428
            +    +D L            +      +   +   LS
Sbjct: 279 PLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLS 317

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 12/181 (6%)

Query: 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLA 173
           +LI    + F+   +D++N+  A + M    G ++++ GL  + F+  Y +  +P   + 
Sbjct: 8   RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML 67

Query: 174 KIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            I G R+ +   +++W +A+    + A     L L R+LVGI E          +    P
Sbjct: 68  AIIGARRWIAGIMVLWGIAST-ATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 234 LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-----NL-GWESVFYIFG----LLGI-AW 282
              R+RA +     +      GL+L+  I+       L GW+ +F + G    +LG+  W
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186

Query: 283 F 283
           F
Sbjct: 187 F 187

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
           G LA  FG + ++   ++ +S+ T L  L +G +  L LSR +VG+G     + A+    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM-LTLSRFIVGMGMAGEYACASTYAV 132

Query: 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL 278
            S P   +S+A +F+  G   G++      P   E  GW + F++ GLL
Sbjct: 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV-GLL 180

Length = 426

>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 73/361 (20%), Positives = 128/361 (35%), Gaps = 39/361 (10%)

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP 204
           G + SVAGL+ +     +A+      WLA+ FG  + +  G+L+  +A  +L   A    
Sbjct: 31  GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLL--IAAGILIRSAPGTA 88

Query: 205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE 264
            L     L+G+G  +       LI R  P +            L  G+        P+ +
Sbjct: 89  LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ 147

Query: 265 NLG--WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGE 322
           + G  W+          +AW++   +L        A LA    +I   +   A+     +
Sbjct: 148 HSGGHWQQ--------ALAWWALPALL--------ALLA----WIPQVRRRVAA----NQ 183

Query: 323 SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP 382
           +   +    I+RS   W +       S  +Y+ + WLP         +   A  +  L  
Sbjct: 184 TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISH-GASAATAGSLLALMQ 242

Query: 383 LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI 442
           LA      +    A  +         V  + Q +       C  L +   GL  W +V  
Sbjct: 243 LAQAASALLIPALARRVKDQRG-IVAVLAVLQLVGL-----CGLLFAPMHGLWAWALVLG 296

Query: 443 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWS 502
           L  G    +F L+      +      A+ L  +  ++G +   +G    G L D + +W 
Sbjct: 297 LGQG---GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353

Query: 503 M 503
           M
Sbjct: 354 M 354

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate [Transport and binding proteins, Other]. Length = 355

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           + ++GL+ S F  G  +  L  G L   FG +K L  G +++ +   L     G    ++
Sbjct: 45  TVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML 104

Query: 208 -LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
            + RV+VG+G G         I+   P + R    S        G   G+L+A
Sbjct: 105 IVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL----YQLGITFGILVA 153

Length = 449

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 79/386 (20%), Positives = 133/386 (34%), Gaps = 76/386 (19%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           +    G + SVAGL+ +     + L       LA+ FG  + L   +L+ +    +  L 
Sbjct: 38  IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG 97

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFG--GLSFGSVAGL- 256
               P L L  +L G G  V       LI R  P     + V  + G    S G+ A L 
Sbjct: 98  GL--PLLFLGTLLAGAGIAVINVLLPSLIKRDFP-----KRVGLMTGLYSTSLGAGAALA 150

Query: 257 -LLAPPIIENL-GWESVFYIFGLLG----IAWFSGFKILQEGETSNGATLAPRSNYINMK 310
             LA P+ ++  GW      + LL     + W    + L+E   S    L          
Sbjct: 151 AALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQALREQAASIATKLVSVRK----- 203

Query: 311 KSLSASLEEMGESLKDVPWKAIFRSKAVWA-MIYAHFCGSWGHYTCLSWLPTYF-----S 364
                                ++RS   W   ++     S  +Y  + WLP        S
Sbjct: 204 ---------------------VWRSPLAWQVTLFMGL-QSLLYYIVIGWLPAILIDRGLS 241

Query: 365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC 424
              + +L   + + +     ++L+  +A +  +                + +  L  A+ 
Sbjct: 242 AAEAGSLL--SLMQLAQLPTALLIPLLARRSKN---------------QRPLVVL--ALL 282

Query: 425 MTLSSIDLGLPHWEIVGILTAGLAL-----SSFALSGLYCTHQDISPEYASILLGITNTV 479
           + L  + +GL        +   L L      +F L+      +      A+ L G+   V
Sbjct: 283 LMLVGL-VGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGV 341

Query: 480 GAVPGIVGVALTGYLLDSTHSWSMSL 505
           G +    G  L G+L D+T SWS  L
Sbjct: 342 GYLLAAFGPWLFGFLHDATGSWSAPL 367

Length = 395

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 152 GLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLS 209
           GL  +     Y L+ + GGWLA ++ G R+ +  G ++ ++   +L + +     GL + 
Sbjct: 65  GLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIG 123

Query: 210 RVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267
             L+ +G G+     + L+    P ++  R    +  + G++ GS+   ++   +  N G
Sbjct: 124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183

Query: 268 WESVFYIFGL-----LGIAWFSGFKILQEG 292
           W   F +  +     L I       +   G
Sbjct: 184 WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213

Length = 498

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+   FG   +   +  +    G A+S   GG LA  FG R V   G +++ L      +
Sbjct: 28  PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
               +  L L+  L   G G++   A +   +  P ++R  A   + GG   GS     L
Sbjct: 88  ADS-LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I   G  + F   G++
Sbjct: 146 ITSVINLEGVPAAFIYMGII 165

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 32/128 (25%), Positives = 52/128 (40%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
            S   G  S+  G V ++F  G  L  L  G L + F    ++   + +  LA  ++ L 
Sbjct: 238 QSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
               P  ++    +G+G G        L+ R +P E   R     F         GL+LA
Sbjct: 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILA 357

Query: 260 PPIIENLG 267
            P+ ++LG
Sbjct: 358 GPLADHLG 365

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 145 GWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTG---VLIWSLATALLPLLA 200
           G++   A ++  ++     L    G W   +++G +K +  G   +++     A+     
Sbjct: 44  GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD 103

Query: 201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR---AVSFVFGGLSFGSVAGLL 257
               GL      + +G G+  +  + ++ +     +  R     +  +  ++ GS    L
Sbjct: 104 LIFYGLGT----IAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL 159

Query: 258 LAPPIIENLGWESVFYIFGLLGI 280
           LA  I EN G+      F L  +
Sbjct: 160 LAGVIAENYGYH---VGFNLAAV 179

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 62/312 (19%), Positives = 104/312 (33%), Gaps = 42/312 (13%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAG------FMPG-LVLSRVLVGIGEGVSPS 222
           G      G +K L   +L+  + T L+ LL        + P  L+L+R++ G   G    
Sbjct: 56  GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115

Query: 223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG---LLG 279
            A   +A   P  +R    SF       G+  GLLLA      L    + Y+ G   LL 
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQ----VGAPVGLLLA-----ALTVLLLSYLLGDDALLE 166

Query: 280 IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK--DVPWKAIFRS-- 335
             W   F +         A L     Y+      +   E+  E  K    P         
Sbjct: 167 WGWRIPFLV--------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHR 218

Query: 336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF 395
           K     +      +   Y   ++LPTY ++ L L+   A  V +L  +   +   ++   
Sbjct: 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGAL 278

Query: 396 ADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALS 455
           +D +   G    +   I  T+     AV + ++ +D G        +    +   +    
Sbjct: 279 SDRI---GRRPVL---IIFTVLAALLAVPLLMALLDSG-----SFTLFFFLVLGMALIGG 327

Query: 456 GLYCTHQDISPE 467
                     PE
Sbjct: 328 MYTGPMGSFLPE 339

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
              ++   ++SS+ GLV S F  G  +  L  GWL+  FG +K L    L++ +   L+ 
Sbjct: 60  FTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119

Query: 198 LLAGFMPGLVL--SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAG 255
           L A  +   +L   RVL+GIG G++ +     ++   P   R    S            G
Sbjct: 120 LAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY----QLAITFG 175

Query: 256 LLLA 259
           +L+A
Sbjct: 176 ILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 176 FGGRKVLQTGVLIWSLATALLPLLAGFMPG---LVLSRVLVGIG-EGVSPSAATDLIARS 231
           +G R  +   ++++S+ T    L  GF PG   L ++R+++G+G  G   S+AT +I  S
Sbjct: 82  YGRRLAMVISIVLFSVGT----LACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI-ES 136

Query: 232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
            P   R++A  F+  G S G+V    +   ++   GW ++F+I G+L I 
Sbjct: 137 WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPII 185

Length = 496

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 59/322 (18%), Positives = 114/322 (35%), Gaps = 11/322 (3%)

Query: 115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK 174
           L    +   +  ++  ++ ++ ++  +        + GL+ S+FF GYA+  L  G L  
Sbjct: 5   LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64

Query: 175 IFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIP 233
            +G RKVL  G+L++ L T LL L     +  L++ R+L G+G G     A+ L++   P
Sbjct: 65  RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124

Query: 234 LE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG 292
              ER  AV  V  G     +A   L   ++           F L  +       ++   
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184

Query: 293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS---------KAVWAMIY 343
           +    A   P +  + + +     L  +   L  +    +              +  +  
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGL 244

Query: 344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG 403
           A      G    L  LP        L+    A   +L  +   L   +      +L+   
Sbjct: 245 ALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDR 304

Query: 404 VETTMVRKICQTIAFLSPAVCM 425
           +  ++  +       L  A+ +
Sbjct: 305 LGRSLGLRAILLAGALLLAILL 326

Length = 338

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 151 AGLVQ---SSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV 207
           AG VQ   S++  G+A+ QL  G +A  FG + V+  G L+++LA     L    +  L+
Sbjct: 25  AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT-IDQLI 83

Query: 208 LSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN- 265
             R L G+    + S   + + R + P EE SR +SFV   L   ++A LL   PII   
Sbjct: 84  YMRFLHGLA-AAAASVVINALMRDMFPKEEFSRMMSFVT--LVM-TIAPLL--APIIGGW 137

Query: 266 ----LGWESVFYIFGLLGI 280
                 W ++F++  L  I
Sbjct: 138 LLVWFSWHAIFWVLALAAI 156

Length = 377

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)

Query: 147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL 206
           ++    L QS FF G  L     G+L+  FG +KVL    L+ +L TA+  +L  F P  
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVL----LLSTLVTAVSGVLTAFSPNY 180

Query: 207 ---VLSRVLVGIGE-GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259
              ++ R+LVG+G  G+   A   L    +P ++R+   + +    S G V   L+A
Sbjct: 181 TVFLVFRLLVGMGIGGIWVQAVV-LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL 198
           P+    GW  +   +  + F           GW    +G R V+  G ++  L   L   
Sbjct: 28  PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87

Query: 199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL 258
            A  +P L  + V+ GIG G           +  P ++R  A      G   G+   ++ 
Sbjct: 88  -ADSLPALYAAAVVAGIGAGAVYGTCVGNALKWFP-DKRGLAAGLTAAGFGAGAALTVVP 145

Query: 259 APPIIENLGWESVFYIFGLL 278
              +I+  G+++ F  FGL 
Sbjct: 146 IAAMIKVSGYQAAFMYFGLG 165

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|179614 PRK03633, PRK03633, putative MFS family transporter protein; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR 210
            G+V SS+F G  +  L  G++ K  G  +      LI++   A L L+ GF    +  R
Sbjct: 43  VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-WSWLAWR 101

Query: 211 VLVGIG 216
            + GIG
Sbjct: 102 FVAGIG 107

Length = 381

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 65/312 (20%), Positives = 114/312 (36%), Gaps = 29/312 (9%)

Query: 138 IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197
           +P     G++    G   S+    Y  S+   G ++     R  L  G+++    +A + 
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL----SAAVM 105

Query: 198 LLAGFMP----GLVLSRVLVGI-----GEGVSPSAATDLIARSIPLEERSRAVSFVFGGL 248
           LL GF+P     + +  VL+ +     G G  P   T  +       ER   VS      
Sbjct: 106 LLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT--MVHWWSQSERGTIVSIWNCAH 163

Query: 249 SFGS-VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
           + G  +  LL+   +     W +  Y   +  I   + F      +T     L P   Y 
Sbjct: 164 NIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII-VALFAFAMMRDTPQSCGLPPIEEYR 222

Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL 367
           N          E   + K++  + +  +K +W +  A+       Y  L W PTY  E  
Sbjct: 223 NDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVK 282

Query: 368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLI-----ATGVETTMVRKICQTIAFLSPA 422
              L +++W   L   A +  T +    +D +      ATGV    +  I   + +++PA
Sbjct: 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA 342

Query: 423 -------VCMTL 427
                  +CM +
Sbjct: 343 GNPLVDMICMIV 354

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
KOG2533	495	consensus Permease of the major facilitator superf	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00898	505	2A0119 cation transport protein.	99.98
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.98
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.94
KOG2615	451	consensus Permease of the major facilitator superf	99.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.93
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
KOG0569	485	consensus Permease of the major facilitator superf	99.93
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.93
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.93
KOG0254	513	consensus Predicted transporter (major facilitator	99.92
PTZ00207	591	hypothetical protein; Provisional	99.91
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.9
PRK09669	444	putative symporter YagG; Provisional	99.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.9
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.89
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.88
PRK10429	473	melibiose:sodium symporter; Provisional	99.87
KOG2563	480	consensus Permease of the major facilitator superf	99.87
PF13347	428	MFS_2: MFS/sugar transport protein	99.87
PRK09848	448	glucuronide transporter; Provisional	99.86
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.85
PRK11462	460	putative transporter; Provisional	99.83
KOG3626	735	consensus Organic anion transporter [Secondary met	99.81
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.79
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.78
COG2211	467	MelB Na+/melibiose symporter and related transport	99.77
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.75
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.63
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.58
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.55
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.53
PRK10642	490	proline/glycine betaine transporter; Provisional	99.53
PRK15011	393	sugar efflux transporter B; Provisional	99.53
PRK10054	395	putative transporter; Provisional	99.5
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.5
PRK05122	399	major facilitator superfamily transporter; Provisi	99.5
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.48
PRK03545	390	putative arabinose transporter; Provisional	99.47
PRK09528	420	lacY galactoside permease; Reviewed	99.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.46
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.46
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.45
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.45
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.44
PRK12382	392	putative transporter; Provisional	99.43
PRK03699	394	putative transporter; Provisional	99.43
PRK09705	393	cynX putative cyanate transporter; Provisional	99.42
PRK03633	381	putative MFS family transporter protein; Provision	99.42
TIGR00893	399	2A0114 d-galactonate transporter.	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.42
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.41
PRK11663	434	regulatory protein UhpC; Provisional	99.41
PRK10489	417	enterobactin exporter EntS; Provisional	99.41
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.41
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.41
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.39
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.38
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.38
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.38
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.37
TIGR00891	405	2A0112 putative sialic acid transporter.	99.36
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.36
PRK09952	438	shikimate transporter; Provisional	99.36
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.35
PRK11010	491	ampG muropeptide transporter; Validated	99.33
PRK10504	471	putative transporter; Provisional	99.33
KOG0569	485	consensus Permease of the major facilitator superf	99.32
TIGR00900	365	2A0121 H+ Antiporter protein.	99.32
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.29
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.29
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.29
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.28
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.27
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.27
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.26
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.26
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.25
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.25
PRK10091	382	MFS transport protein AraJ; Provisional	99.25
KOG3762	618	consensus Predicted transporter [General function	99.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
PRK11043	401	putative transporter; Provisional	99.25
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.24
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.24
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.24
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.23
TIGR00895	398	2A0115 benzoate transport.	99.23
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.22
PRK11902	402	ampG muropeptide transporter; Reviewed	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.2
KOG0637	498	consensus Sucrose transporter and related proteins	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.19
TIGR00898	505	2A0119 cation transport protein.	99.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.18
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.17
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.17
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.17
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.16
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.16
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.14
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.14
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.14
PLN00028	476	nitrate transmembrane transporter; Provisional	99.14
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.14
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	99.13
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.12
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.11
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.1
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.09
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.07
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.06
PRK10133	438	L-fucose transporter; Provisional	99.06
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.05
PF13347	428	MFS_2: MFS/sugar transport protein	99.04
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.03
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.02
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.99
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.99
PRK09848	448	glucuronide transporter; Provisional	98.94
TIGR00805	633	oat sodium-independent organic anion transporter.	98.91
KOG3810	433	consensus Micronutrient transporters (folate trans	98.9
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.9
TIGR00901	356	2A0125 AmpG-related permease.	98.9
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.9
PRK10429	473	melibiose:sodium symporter; Provisional	98.9
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.85
PRK09669	444	putative symporter YagG; Provisional	98.84
KOG2532	466	consensus Permease of the major facilitator superf	98.84
KOG2615	451	consensus Permease of the major facilitator superf	98.83
PTZ00207	591	hypothetical protein; Provisional	98.79
COG0477	338	ProP Permeases of the major facilitator superfamil	98.79
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.73
COG2211	467	MelB Na+/melibiose symporter and related transport	98.71
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.7
KOG3762	618	consensus Predicted transporter [General function	98.69
COG3202	509	ATP/ADP translocase [Energy production and convers	98.68
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.65
PRK11462	460	putative transporter; Provisional	98.59
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.58
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.57
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.55
KOG0254	513	consensus Predicted transporter (major facilitator	98.51
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.41
KOG2533	495	consensus Permease of the major facilitator superf	98.33
PF12832	77	MFS_1_like: MFS_1 like family	98.31
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.3
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.25
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.16
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.1
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.1
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.08
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	98.03
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.94
PF12832	77	MFS_1_like: MFS_1 like family	97.94
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.8
KOG3880	409	consensus Predicted small molecule transporter inv	97.74
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.71
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.7
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.68
KOG2563	480	consensus Permease of the major facilitator superf	97.62
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.53
PRK03612	521	spermidine synthase; Provisional	97.27
PRK03612	521	spermidine synthase; Provisional	97.14
KOG3097	390	consensus Predicted membrane protein [Function unk	97.13
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.0
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.9
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	96.76
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.63
COG0477	338	ProP Permeases of the major facilitator superfamil	96.61
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.3
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.27
KOG3626	735	consensus Organic anion transporter [Secondary met	96.22
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.15
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.03
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.91
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.7
KOG0637	498	consensus Sucrose transporter and related proteins	94.17
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.88
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.64
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.6
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.75
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.57
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.44
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.66
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.47
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	89.31
KOG3880	409	consensus Predicted small molecule transporter inv	88.4
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	84.12
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	83.27
KOG1307	588	consensus K+-dependent Ca2+/Na+ exchanger NCKX1 an	82.52
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	80.27

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-42  Score=324.83  Aligned_cols=408  Identities=16%  Similarity=0.182  Sum_probs=329.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      |+++++.+.+.|...++.+.+++.+.|.+.++.++|.+|+|++.++++++|.++..+.|.++||.+.|..+.+++++.++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai  106 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhH--HHhccccchh
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPIIENLGWE  269 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~gw~  269 (535)
                      ..++++ ++++.+.+.++.++.|++.|..+|.+...+..|++++|||+..++++.+-++|+.+.|++.  +++..+.+||
T Consensus       107 ~nil~G-fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~  185 (448)
T COG2271         107 VNILFG-FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR  185 (448)
T ss_pred             HHHHHh-hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence            999987 5668899999999999999999999999999999999999999999999999999999999  8999889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhc-cCCCCCcHHHhhhcHHHHHHHHHHHHH
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG-ESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (535)
                      ..|++.++++++..++.+++-++.|+...-++.++-+.+..+.. .+.++.+ .+.++.-++.+++||.+|.+.+..++.
T Consensus       186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~-~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfv  264 (448)
T COG2271         186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIY-EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFV  264 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhh-hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHH
Confidence            99999999998876666666555544332222211111111110 0000000 111223456789999999999999999


Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (535)
                      ...-+++..|.|.|+.|..|+|...++...+++-+++++|.+++|+++||+.+.+      |.....+..+...+++...
T Consensus       265 YivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~  338 (448)
T COG2271         265 YVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLY  338 (448)
T ss_pred             HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997442      2223333333334444444


Q ss_pred             hhcCCC-cHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh-hhhHHHHHHHHHhcccCcchHHHH
Q 009409          429 SIDLGL-PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLDSTHSWSMSLF  506 (535)
Q Consensus       429 ~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~~~~~  506 (535)
                      ...++. .....+.++++|+...+..........+..|++..|++.|+...++++ |.+.+....|++.|.+| |...|+
T Consensus       339 w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g-W~g~Fi  417 (448)
T COG2271         339 WLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG-WDGGFI  417 (448)
T ss_pred             HcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC-CcchHH
Confidence            433333 345556666777777666666666677778889999999999999999 99999999999999975 999998


Q ss_pred             HHHHHHHHHHHhhhhhccCCCC
Q 009409          507 APSIFFYLTGTIVWLAFASSKP  528 (535)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~  528 (535)
                      +..+..+++.+++....+.+++
T Consensus       418 ~~~~~a~l~~lll~~~~~~~~~  439 (448)
T COG2271         418 VLSIAALLAILLLLPVWNAEER  439 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhcch
Confidence            8888777777766666654444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.7e-38  Score=299.15  Aligned_cols=378  Identities=20%  Similarity=0.262  Sum_probs=308.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      ..+..+.++.|............+|++.+|+|+|..+.|++.++|.+++.++.++...+.||+.||++++..+.++.++.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n   92 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN   92 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            55667778888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++. .+++||+.+++.|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+.+|||+.|+
T Consensus        93 ~l~-alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          93 LLS-ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             HHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            776 5899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhh
Q 009409          274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (535)
Q Consensus       274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (535)
                      +.++++++.++. +..+|+++.++......+                        ...+.+|+|.++...+..++...+.
T Consensus       172 ~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~------------------------~~~~~l~~p~v~~~l~~t~l~~~g~  227 (394)
T COG2814         172 AIAVLALLALLLLWKLLPPSEISGSLPGPLR------------------------TLLRLLRRPGVLLGLLATFLFMTGH  227 (394)
T ss_pred             HHHHHHHHHHHHHHHhCCCccCCCCCCcchh------------------------HHHHHhcCchHHHHHHHHHHHHcch
Confidence            999998776544 445551111111111000                        1257889999999999999999999


Q ss_pred             HHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 009409          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (535)
Q Consensus       353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (535)
                      +..++|+..++++..|++....+++...+++++++|+.++|++.|| +.+        +.. ........+.+..+....
T Consensus       228 F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~--------~~l-~~~~~l~a~~~l~l~~~~  297 (394)
T COG2814         228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR--------RAL-IAALLLLALALLALTFTG  297 (394)
T ss_pred             hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch--------hHH-HHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999 543        222 223233333333333334


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHH
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  512 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~  512 (535)
                      .+........++.++..............+ ..||.+..+.+++....++|..+|..++|.++|++ ++....+..+++.
T Consensus       298 ~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~~~~~~~~a~l~  375 (394)
T COG2814         298 ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GYAATGWVGAALL  375 (394)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHH
Confidence            444444444555555554444444444444 66899999999999999999999999999999997 4888888877777


Q ss_pred             HHHHHhhhhhccCCCC
Q 009409          513 YLTGTIVWLAFASSKP  528 (535)
Q Consensus       513 ~~~~~~~~~~~~~~~~  528 (535)
                      +++..+.+...++.++
T Consensus       376 ~~a~~~~~~~~~~~~~  391 (394)
T COG2814         376 LLALLLALLSARKDRR  391 (394)
T ss_pred             HHHHHHHHHHHhcccc
Confidence            6666666555554444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1.9e-37  Score=317.89  Aligned_cols=422  Identities=25%  Similarity=0.401  Sum_probs=311.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhc----------------------ccCCCccchhHHHHHHHHHHHhh
Q 009409          108 NIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSH----------------------RFGWNSSVAGLVQSSFFWGYALS  165 (535)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~~~~~s~~~~~~~~~  165 (535)
                      ..+.|+.+..++++.+...+.++.+++...+.+.+                      ++|++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            34456788888888888999999999999888776                      88999999999999999999999


Q ss_pred             hccchhhhcccCCchhhHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHH
Q 009409          166 QLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV  244 (535)
Q Consensus       166 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  244 (535)
                      ++++|+++||+|+|+++..+.++++++.++.... ..+++.+++.|+++|++.+...+....++++++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999888887765432 344678999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHhhhHHHhccc-cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccC
Q 009409          245 FGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (535)
Q Consensus       245 ~~~~~~g~~~g~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (535)
                      ..+..+|.+++|++++++.+. .|||+.|++.+++.++..+.++.+++++++......++++.. .++   ...++..+.
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-i~~---~~~~~~~~~  248 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKY-INS---SLQGQKGST  248 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHH-HHh---hcccccCCC
Confidence            999999999999999999988 499999999999887776666655544333222111111100 000   000001111


Q ss_pred             CCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Q 009409          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (535)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (535)
                      ..+.+++++++++.+|...+..++.....+.+.+|+|.|+++.+|++..+.+++.+++.++.+++.++.|+++||+++|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22446899999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCchhH-HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh
Q 009409          404 VETTMV-RKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV  482 (535)
Q Consensus       404 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  482 (535)
                      ...... ++....+.....++...............++.+.+.+.+ .............+..|+.+|.+.|+.++.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  407 (465)
T TIGR00894       329 TLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAV-SSGPLAGVLINSLDLAPRFLGFIKGITGLPGFI  407 (465)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH-hhhhhhhhhhchhhcChhHHHHHHHHHHHHHHH
Confidence            433221 122222222222222222221122222222223222222 222222232333445677999999999999999


Q ss_pred             hhhHHHHHHHHHhccc--CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCC
Q 009409          483 PGIVGVALTGYLLDST--HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD  535 (535)
Q Consensus       483 g~~igp~i~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (535)
                      |+.++|.+.|.+.+..  ++|...|.+.++..++..++ +....+.++++|+++|
T Consensus       408 ~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~-~~~~~~~~~~~w~~~~  461 (465)
T TIGR00894       408 GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF-YLIFGSAERQDWAKEE  461 (465)
T ss_pred             HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH-eeeeecceecCCCCCc
Confidence            9999999999998754  45888888877666555444 4455566667766543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.2e-38  Score=326.35  Aligned_cols=399  Identities=12%  Similarity=0.067  Sum_probs=291.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      .+.++.++++.+++.++++.++++..|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||+++.++.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHhh----hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-
Q 009409          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-  266 (535)
Q Consensus       192 ~~~~~~~~----~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  266 (535)
                      +.++.+..    +++++.++++|++.|++.+...|....++++++|+++|++++|++..+.++|.+++++++.++.+.. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence            77665432    5778999999999999999999999999999999999999999999999999999999988776643 


Q ss_pred             --chhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHh-ccCCC-CC-cHHHhhhcHHHHHH
Q 009409          267 --GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEM-GESLK-DV-PWKAIFRSKAVWAM  341 (535)
Q Consensus       267 --gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~  341 (535)
                        +||..|.+.+++.++..+..+++.++++++.....+++ ...  +....+.++. +++.. .. ..+..+++|.+|..
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  263 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFG--EPISEEDKETESTDMTKWQIFVEYVLKNPVIWLL  263 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-ccc--CccchhhhccccccCcHHHHHHHHHHcChHHHHH
Confidence              69999998888776655444444332222211111110 000  0000000000 00000 01 12337899999999


Q ss_pred             HHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 009409          342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP  421 (535)
Q Consensus       342 ~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  421 (535)
                      .+..++.....++...|+|.|+++.+|++..++++......++.+++.++.|+++||+++|+.       ..........
T Consensus       264 ~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-------~~~~~~~~~~  336 (467)
T PRK09556        264 CFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA-------LVACIALALI  336 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-------HHHHHHHHHH
Confidence            999888888888899999999998899999999999999999999999999999999987622       1111111111


Q ss_pred             HHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh-hhhHHHHHHHHHhc----
Q 009409          422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLD----  496 (535)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~----  496 (535)
                      ...+... ....+.....+..++.|+..............+..|++.+|++.|+.+..+++ |++++|.+.|++.|    
T Consensus       337 ~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~  415 (467)
T PRK09556        337 IFTLGVY-QHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKN  415 (467)
T ss_pred             HHHHHHH-HhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccc
Confidence            1111111 11223333334444555433222222224455778899999999999999997 77999999999999    


Q ss_pred             --------ccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          497 --------STHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       497 --------~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                              .. +|...|.+.+++.+++.+..+..
T Consensus       416 g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        416 GTPIFGYTLT-GWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             cccccccccc-ChHHHHHHHHHHHHHHHHHHHHH
Confidence                    44 48999988777666655554433

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.6e-37  Score=314.92  Aligned_cols=406  Identities=15%  Similarity=0.146  Sum_probs=294.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++++...++.++..+++...++..+|.+.+++|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.+++++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            44666677788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      +.++.+ .+++++.+++.|++.|++.+...+...+++.+++++++|++++++++.+..+|.+++|++++++.+.+|||+.
T Consensus       101 ~~~~~~-~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~  179 (434)
T PRK11663        101 INILFG-FSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG  179 (434)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            887765 5677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCC-CcH-HHhhhcHHHHHHHHHHHHH
Q 009409          272 FYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKD-VPW-KAIFRSKAVWAMIYAHFCG  348 (535)
Q Consensus       272 f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~  348 (535)
                      |++.+++.++.. +..+.++++++........+.+... .+   ...+...+..+. ..+ ...++++.+|.+.+..++.
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LE---LAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLV  255 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-cc---cchhccccCCChhhhHHHHHhcChHHHHHHHHHHHH
Confidence            999888765443 3344455543221111100000000 00   000000000000 111 2366789999888888877


Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (535)
                      ....+.+.+|+|.|+++.+|++..+++...+...+++++++++.|+++||+.+++...   .......+.......+.. 
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~---~~~~~~~~~~~~~~~~~~-  331 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGP---MNLIFAAGILLSVGSLWL-  331 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccH---HHHHHHHHHHHHHHHHHH-
Confidence            7778888899999998788999999999999999999999999999999995432111   111111111111111111 


Q ss_pred             hhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHH
Q 009409          429 SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAP  508 (535)
Q Consensus       429 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~  508 (535)
                       .......+.....+.+|++.............+..++++++++.|+.++..++|+.++|.+.|++.|+.| |...|.+.
T Consensus       332 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~~~~f~~~  409 (434)
T PRK11663        332 -MPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-WTGFFVVI  409 (434)
T ss_pred             -cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-cHHHHHHH
Confidence             1122222222222333332221111222334555778999999999999999999999999999999986 99999888


Q ss_pred             HHHHHHHHHhhhhhccCCCC
Q 009409          509 SIFFYLTGTIVWLAFASSKP  528 (535)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~  528 (535)
                      +++.++.++..+...+++++
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~  429 (434)
T PRK11663        410 SIAAGISALLLLPFLNAQAP  429 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhch
Confidence            88777766655555544443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-37  Score=304.08  Aligned_cols=389  Identities=34%  Similarity=0.622  Sum_probs=326.5

Q ss_pred             hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHhhhccCC
Q 009409          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGEGV  219 (535)
Q Consensus       141 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~G~~~~~  219 (535)
                      ..+++.|..+.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++....++. ++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            34688999999999999999999999999999999999999999999999999988766533 35789999999999999


Q ss_pred             chhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc-cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 009409          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWESVFYIFGLLGIAWFSGFKILQEGETSNGA  298 (535)
Q Consensus       220 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (535)
                      .+|....+.+.|.|++||++..++..++..+|.+++.+++|++.+. +||+++|++.++++++..++++.+..+++.+.+
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999988888887776666554


Q ss_pred             CCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHH
Q 009409          299 TLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS  378 (535)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~  378 (535)
                      ...++|.....+.    ..++..++..+.||+++++++.+|...+..++...+.+.+..++|+|+.+.+|++..+.|++.
T Consensus       225 ~is~~El~~I~~~----k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~s  300 (466)
T KOG2532|consen  225 NISEKELKYIEKG----KSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLS  300 (466)
T ss_pred             CCCHHHHHHHHhc----ccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHH
Confidence            4444333211111    011111112578999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhh
Q 009409          379 ILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLY  458 (535)
Q Consensus       379 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  458 (535)
                      +++.+...+..+++|.++||+..|+......||....++....+++++..........+..+.++.+..+..++......
T Consensus       301 alP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~  380 (466)
T KOG2532|consen  301 ALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFY  380 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhH
Confidence            99999999999999999999988766777778999999999988888877766554555555555666666666666666


Q ss_pred             hhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc-c-cCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCC
Q 009409          459 CTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD-S-THSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTR  534 (535)
Q Consensus       459 ~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (535)
                      .......|++.+..+|+.+.+..+.++++|.+.|.+.. . ...|..+|++.+++.++. .+.+.++.+.++|+|+++
T Consensus       381 ~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~-~i~f~~f~s~e~~~w~~~  457 (466)
T KOG2532|consen  381 KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVG-NIIFLFFGSGEPAPWTKS  457 (466)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHh-chheeEeecCcccCccCC
Confidence            55555589999999999999999999999999999994 1 236999999988766555 466777777788887653

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=4.5e-37  Score=309.01  Aligned_cols=388  Identities=19%  Similarity=0.261  Sum_probs=284.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +|+.++++++.+++.++++.+++...|.+.+++|.+..+.|++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            56788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc------c
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE------N  265 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~  265 (535)
                      +.++.+ ++++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|.++++++++++.+      .
T Consensus        86 ~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  164 (412)
T TIGR02332        86 ASTATM-FATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL  164 (412)
T ss_pred             HHHHHH-HhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            998875 678889999999999999999999999999999999999999999999999999999999998864      3


Q ss_pred             cchhHHHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhh--hhhhHHHhc---cCCC---CCcHHHhhhcH
Q 009409          266 LGWESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKS--LSASLEEMG---ESLK---DVPWKAIFRSK  336 (535)
Q Consensus       266 ~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~---~~~~~~~~~~~  336 (535)
                      .|||+.|++.++..++..+ ..++++|+++..+ ...++++....+..  ...+.++.+   +..+   ...++.++ ++
T Consensus       165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  242 (412)
T TIGR02332       165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TP  242 (412)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-Ch
Confidence            6999999998888765544 4445555443221 11111111000000  000000000   0000   11234433 57


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      .+|...+..++.....+.+.+|+|.|+++. .|++..+++.+.....++.+++.++.|+++||+++|       +.. ..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r-------~~~-~~  314 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER-------KHH-TA  314 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc-------HHH-HH
Confidence            888888888888888999999999999763 467888999999999999999999999999999754       211 11


Q ss_pred             HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      ...+...+.+.+... ..........+++.+.+.............+..++++|+++.|+.+..+++|++++|.+.|.+.
T Consensus       315 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       315 LPYLFAAAGWLLASA-TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            222222222222221 2222222222222222211111111122234478899999999999999999999999999999


Q ss_pred             cccCcchHHHHHHHHH
Q 009409          496 DSTHSWSMSLFAPSIF  511 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~~  511 (535)
                      |..|+|...+.+.+++
T Consensus       394 ~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       394 DATGSFNSGLWFVAAL  409 (412)
T ss_pred             ccCCCCchhHHHHHHH
Confidence            9988899888775553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=3.6e-36  Score=301.35  Aligned_cols=373  Identities=17%  Similarity=0.174  Sum_probs=284.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      |..+..+.+..+..........+.+|.+.+++|.|..+.|++.+.+.+++.++++++|++.||+|||+++..+.++++++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            34444445544444444445566789999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      +++.. .+++++.++++|+++|++.+...+...+++.+++|+++|++++|++..+..+|.+++|++++.+.+..|||+.|
T Consensus        88 ~~~~~-~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f  166 (390)
T PRK03545         88 HVLSA-LAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF  166 (390)
T ss_pred             HHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence            87764 67888999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh-hcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhh
Q 009409          273 YIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (535)
                      ++.+++.++..+... .+|+++++++    ..                      ...+++.+|+|.++...+..++....
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~~~~~~----~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (390)
T PRK03545        167 LAIGGGALITLLLLIKLLPLLPSEHS----GS----------------------LKSLPLLFRRPALVSLYLLTVVVVTA  220 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCc----ch----------------------HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            999887766544433 3333221100    00                      00135678888888776666666666


Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      .+....++|.++++.+|++..+++.+.....++.++++++.+++.||++++         .... +..............
T Consensus       221 ~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~-~~~~~~~~~~~l~~~  290 (390)
T PRK03545        221 HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG---------FLLI-AIALLLVCLLLLLPA  290 (390)
T ss_pred             HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh---------HHHH-HHHHHHHHHHHHHHH
Confidence            677778888898888899999999999999999999999999999998743         2222 222222222222111


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      .++....++..++.|++.....+.......+ ..|+.++++.|+++...++|..+||.++|.+.|..| +...|...+.+
T Consensus       291 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~  368 (390)
T PRK03545        291 ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLK-LAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAAL  368 (390)
T ss_pred             hchHHHHHHHHHHHHHHHhcchHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHH
Confidence            2333444455556666655544444444444 456789999999999999999999999999999984 88888887776


Q ss_pred             HHHHHHhhhhhcc
Q 009409          512 FYLTGTIVWLAFA  524 (535)
Q Consensus       512 ~~~~~~~~~~~~~  524 (535)
                      .+++.+..+...+
T Consensus       369 ~~~~~~~~~~~~~  381 (390)
T PRK03545        369 ALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHcc
Confidence            6666665555554

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=4.8e-36  Score=301.33  Aligned_cols=394  Identities=25%  Similarity=0.398  Sum_probs=295.1

Q ss_pred             HHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhh
Q 009409          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (535)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (535)
                      ++..++++..++...|.+.+++|.+..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++..+.+ ..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~   81 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGA   81 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcC
Confidence            456778889999999999999999999999999999999999999999999999999999999999888887775 5667


Q ss_pred             hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHH
Q 009409          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (535)
Q Consensus       203 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  282 (535)
                      ++.+++.|++.|++.+...+....++.|++|+++|++++++......+|.+++|.+++.+.+..+||+.|++.+++.++.
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988887665


Q ss_pred             HHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHH
Q 009409          283 FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY  362 (535)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~  362 (535)
                      .+......++++++++...++++....++...+..++.+++.....+++.+++|+++...+..++.......+..+.|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (399)
T TIGR00893       162 GVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTY  241 (399)
T ss_pred             HHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            55444433332222111111111100000000000111112223456788899999999999999999999999999999


Q ss_pred             HHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 009409          363 FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGI  442 (535)
Q Consensus       363 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (535)
                      +++.+|.+..+.+.+.+...++.+++.++.+++.||+++|+..... .........+..  .............+..+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  318 (399)
T TIGR00893       242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF-ARKTAIIAGLVL--SLLMFATNYVNIPYAALAL  318 (399)
T ss_pred             HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHH--HHHHHHhccchhHHHHHHH
Confidence            9988999999999999999999999999999999999987421100 001111111111  1111111111223333333


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhh
Q 009409          443 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVW  520 (535)
Q Consensus       443 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  520 (535)
                      ...+.+.....+.......+..|+++|+++.|+.+.+.++|..++|.+.|.+.|..|++...+.+.+++.+++.+..+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       319 VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            333333333456666677788899999999999999999999999999999999987688888877776655544443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=6.2e-36  Score=313.07  Aligned_cols=406  Identities=13%  Similarity=0.126  Sum_probs=291.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHH
Q 009409          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (535)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (535)
                      +..|.++++++++.+...++...++..+|.+.+++|++..+.+++.+++.++.+++.+++|+++||+|||++++++.+++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34566677777788888888888999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc----
Q 009409          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----  265 (535)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----  265 (535)
                      +++.++.+ ++++++.++++|++.|++.++..+...++++|++|+++|++.++++.+++.+|.++++.++..+...    
T Consensus       243 ~i~~ll~a-fa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~  321 (742)
T TIGR01299       243 GFFAFFSS-FVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS  321 (742)
T ss_pred             HHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            88887764 6677899999999999999999999999999999999999999999999999999999888766543    


Q ss_pred             ---------cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhh---hh----------------hhhhH
Q 009409          266 ---------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMK---KS----------------LSASL  317 (535)
Q Consensus       266 ---------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~  317 (535)
                               .+||+.|++.++..++.++..+++||+++....+.+.++.....+   +.                .....
T Consensus       322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~  401 (742)
T TIGR01299       322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH  401 (742)
T ss_pred             hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence                     369999999888877777777888887654211111110000000   00                00000


Q ss_pred             HHh-----ccCCC-----------------CCcHHHhhhc---HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH----h-
Q 009409          318 EEM-----GESLK-----------------DVPWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE----L-  367 (535)
Q Consensus       318 ~~~-----~~~~~-----------------~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~----~-  367 (535)
                      ...     ++...                 +..++.+++.   +..+.+++.+++..+++|++..|+|.++++.    + 
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~  481 (742)
T TIGR01299       402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYA  481 (742)
T ss_pred             hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000     00000                 0023344443   3446677888889999999999999987541    0 


Q ss_pred             ----------------CCCh------------------------------------------------------------
Q 009409          368 ----------------SLNL------------------------------------------------------------  371 (535)
Q Consensus       368 ----------------g~s~------------------------------------------------------------  371 (535)
                                      +++.                                                            
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  561 (742)
T TIGR01299       482 ALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDF  561 (742)
T ss_pred             hhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccch
Confidence                            0000                                                            


Q ss_pred             ---------------------------------hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 009409          372 ---------------------------------TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF  418 (535)
Q Consensus       372 ---------------------------------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  418 (535)
                                                       ....+...+..++.+++.+++|+++||+|+|         ..+..++
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~~~~  632 (742)
T TIGR01299       562 EEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLAGSM  632 (742)
T ss_pred             hhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHH
Confidence                                             0123345666788999999999999999864         3344455


Q ss_pred             HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          419 LSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      ++.+++.++..... +....++..++.+++.+........++.+.+|++.|++++|+.++...+|.+++|.++|.+.+..
T Consensus       633 ~lsai~~ll~~~~~-s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~  711 (742)
T TIGR01299       633 VLSCISCFFLSFGN-SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT  711 (742)
T ss_pred             HHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55555444443322 22333344445555555555666667777789999999999999999999999999999998753


Q ss_pred             CcchHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 009409          499 HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQ  529 (535)
Q Consensus       499 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (535)
                        ...+|++.+++.++++++.++. ++++.+
T Consensus       712 --~~~pf~i~a~~lll~~ll~~~L-PET~~~  739 (742)
T TIGR01299       712 --KAAPILFASAALACGGLLALKL-PDTRGQ  739 (742)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhC-CCCccc
Confidence              5566766666665555554433 555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=2.1e-35  Score=295.39  Aligned_cols=382  Identities=14%  Similarity=0.129  Sum_probs=287.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      |.....+++..+...+. ..+++.+|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~   87 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG   87 (393)
T ss_pred             HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence            34444444444333222 66788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-chhHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESV  271 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~  271 (535)
                      .++.+ ++++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+.
T Consensus        88 ~~~~~-~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~  165 (393)
T PRK09705         88 ALMRE-LYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT  165 (393)
T ss_pred             HHHHH-HCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            98875 67788999999999999999999999999999997 88999999999999999999999999988875 89999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhh
Q 009409          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (535)
Q Consensus       272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (535)
                      +.+.++..++..+..+...+++++.+.+  ++                      . ..++.+++++.|.+.+..++....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------~-~~~~~l~~~~~~~l~~~~~~~~~~  220 (393)
T PRK09705        166 LAWWALPAVVALFAWWWQSAREVASSHK--TT----------------------T-TPVRVVFTPRAWTLGVYFGLINGG  220 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccC--CC----------------------c-CCcccccCHhHHHHHHHHHHHHHH
Confidence            8876665544433333332222111000  00                      0 012445678888877777777788


Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      ++...+|+|.|+++ +|++..++|.+.++..++.++++++.+++.||++++         .....+..+..+........
T Consensus       221 ~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~---------~~~~~~~~l~~~~~~~~~~~  290 (393)
T PRK09705        221 YASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR---------KLLMLALVLQLVGFCGFIWL  290 (393)
T ss_pred             HHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch---------HHHHHHHHHHHHHHHHHHHc
Confidence            88899999999986 799999999999999999999999999999998764         12222222222222222211


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccC-CcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-PEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSI  510 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~  510 (535)
                      ..+....  ..++.+++.+...+.......+..+ +++++++.|+.+.++++++.++|.+.|++.|..|++...|.+.++
T Consensus       291 ~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~  368 (393)
T PRK09705        291 PLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHAL  368 (393)
T ss_pred             cchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            2222222  2234455555555544444455554 578999999999999999999999999999999889999988887


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCC
Q 009409          511 FFYLTGTIVWLAFASSKPQNFSTR  534 (535)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~  534 (535)
                      +.++..++.+.+.++++.+.+.++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK09705        369 CVVGLMIITLRFAPARFPQLWVKE  392 (393)
T ss_pred             HHHHHHHHHHHhccccccchhccc
Confidence            777777776777777666665543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.4e-34  Score=291.75  Aligned_cols=382  Identities=20%  Similarity=0.235  Sum_probs=288.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHH
Q 009409          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (535)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (535)
                      ++|..+...++..+..+++....+...|.+.+++|.|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            35667777778888899999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhH
Q 009409          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (535)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (535)
                      ++.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+||+
T Consensus        92 ~~~~~~~-~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  170 (406)
T PRK11551         92 LFSLATA-QAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH  170 (406)
T ss_pred             HHHHHHH-HhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence            8876664 567789999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhh---hcHHHHHHHHHHH
Q 009409          271 VFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF---RSKAVWAMIYAHF  346 (535)
Q Consensus       271 ~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~  346 (535)
                      .|++.+++.++..+ ...++|++++....+..++++    +                ...+..+   +.+..+.+.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~  230 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR----A----------------PVLRALFGEGRATATLLLWISYF  230 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh----h----------------hhHHHHhhhhhhhHHHHHHHHHH
Confidence            99998876555443 334455543321111000000    0                0001111   1233344444455


Q ss_pred             HHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Q 009409          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (535)
Q Consensus       347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (535)
                      +.....+....++|.|+++ .|++..+.+.+.....++.++++++.|++.||++++         .......+...+.+.
T Consensus       231 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~  300 (406)
T PRK11551        231 FTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR---------RVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHH
Confidence            5556667778899999975 699999999999999999999999999999999864         122222222222322


Q ss_pred             HhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHH
Q 009409          427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLF  506 (535)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~  506 (535)
                      .... ..+.....+..++.+++.....+.......+.+|+++|+++.|+.++..++|..++|.++|.+.+..+++...+.
T Consensus       301 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~  379 (406)
T PRK11551        301 ALAA-APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIG  379 (406)
T ss_pred             HHHh-cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHH
Confidence            2222 223333344445555555555555556677778999999999999999999999999999999998777777776


Q ss_pred             HHHHHHHHHHHhhhhhcc
Q 009409          507 APSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~  524 (535)
                      ....+.+++.++.+...+
T Consensus       380 ~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        380 ASIPVILVAALAALLLVS  397 (406)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            666655555555544443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=8.3e-35  Score=296.64  Aligned_cols=401  Identities=15%  Similarity=0.208  Sum_probs=277.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      |.++..+++.+...++++..+++..|.+.++ |+|..+.+++.+.+.+++.++++++|+++||+|||++++++.++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~  106 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  106 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence            4555556666777777877788889998888 999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhh---hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHH-HHhhhHHHhccccch
Q 009409          193 TALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV-AGLLLAPPIIENLGW  268 (535)
Q Consensus       193 ~~~~~~~~---~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~gw  268 (535)
                      .++.++..   ++++.+++.|++.|++.+...+.....+.+++|+++|++++++++.+..+|.. .+|+++..+....||
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw  186 (452)
T PRK11273        107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW  186 (452)
T ss_pred             HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence            87665432   35678899999999999998888888899999999999999999999999874 455554444334599


Q ss_pred             hHHHHHHHHHHHHH-HHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHH
Q 009409          269 ESVFYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (535)
Q Consensus       269 ~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (535)
                      |+.|++.+++.++. ++..++++++++....+..++.+ ....+.... .++.+.+.++...+.++|++.+|...+..++
T Consensus       187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        187 HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK-NDYPDDYNE-KHEQELTAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh-hcccccccc-ccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            99999988876654 34445555544321111100000 000000000 0000000000012346789999998888888


Q ss_pred             HhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009409          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (535)
Q Consensus       348 ~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (535)
                      .....+....++|.|+++..|++..+++.+..+..++.+++.++.|+++||+++++.      ............+....
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~------~~~~~~~~~l~~~~~~~  338 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR------GATGVFFMTLVTIATIV  338 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc------chHHHHHHHHHHHHHHH
Confidence            888888899999999998889999999988888899999999999999999964321      11111111111111111


Q ss_pred             hhhc-CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhH-HHHHHHHHhcccCcchHHH
Q 009409          428 SSID-LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV-GVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       428 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-gp~i~G~l~~~~g~~~~~~  505 (535)
                      .... ..+.....+..+..+...............+..|++.+|+++|+.+...++|+.+ +|.++|++.|..| |...|
T Consensus       339 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f  417 (452)
T PRK11273        339 YWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGF  417 (452)
T ss_pred             HHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHH
Confidence            1111 1222223333333443322222222233456788899999999999999998765 7999999999986 88888


Q ss_pred             HHHHHHHHHHHHhhhhhc
Q 009409          506 FAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~  523 (535)
                      .+.+++.+++++......
T Consensus       418 ~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        418 MVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            877776666655555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.3e-34  Score=298.06  Aligned_cols=373  Identities=17%  Similarity=0.129  Sum_probs=289.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +|..+..+++.+++..+|.+++++++|.+.+++|.+..+.+|+.+.+.+++.++.+++|+++||+|||++++++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcc-cccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (535)
                      ++++++ .+++++.++++|+++|+|.+...+.....+.+.+ |+++|++++|++.....+|..+||++++++.++.||||
T Consensus        84 ~~~~~~-~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~  162 (495)
T PRK14995         84 ASLAAA-FSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS  162 (495)
T ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence            998775 6788899999999999999998888888887776 67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhh-----------hh---hhhhhh------------------H
Q 009409          271 VFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYIN-----------MK---KSLSAS------------------L  317 (535)
Q Consensus       271 ~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~------------------~  317 (535)
                      .|++...+.++.++ ..+.+|++++++ .++.+......           ..   +.+...                  .
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~  241 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAGRR-DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR  241 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            99998877665543 334444433221 11111110000           00   000000                  0


Q ss_pred             HHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 009409          318 EEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD  397 (535)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d  397 (535)
                      .+.+......+ .+++|+|.++...+..++.....++...++|.|++..+|+++.++|+...+..++..++.++.|++.|
T Consensus       242 ~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~  320 (495)
T PRK14995        242 TQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS  320 (495)
T ss_pred             HHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01111111112 36788999888888888888888888899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCchhHHHHHHHHHHHHHHHHHHHh-hhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH
Q 009409          398 NLIATGVETTMVRKICQTIAFLSPAVCMTLS-SIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI  475 (535)
Q Consensus       398 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  475 (535)
                      |+++|         .....+.+...+..... .... .+........++.|++.+.............+|+++++.+.++
T Consensus       321 r~g~~---------~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~  391 (495)
T PRK14995        321 RLGLR---------LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI  391 (495)
T ss_pred             HcCch---------HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence            99854         22233333333332222 1222 2233344556677888777777777777778899999999999


Q ss_pred             HHHhhhhhhhHHHHHHHHHhc
Q 009409          476 TNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       476 ~~~~~~lg~~igp~i~G~l~~  496 (535)
                      .++..++|+.+|+.+.|.+.+
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998865

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=4.6e-34  Score=286.24  Aligned_cols=376  Identities=17%  Similarity=0.166  Sum_probs=284.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHH
Q 009409          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (535)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (535)
                      ++|++.....++.++.........++.+|.+.+++|+|..+.+++.+.+.+++.++++++|++.||+|||+++..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34667777888888888888899999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-ccch
Q 009409          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGW  268 (535)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw  268 (535)
                      +++.++.. .+++++.+++.|++.|++.+...+...+++.+++|+++|+++++..+....+|..++|.+.+++.. ..||
T Consensus        83 ~i~~~l~~-~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         83 ILAVAGLM-FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHHH-HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            88887765 567788999999999999998888899999999998999999999999999999999999888764 5799


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHH
Q 009409          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (535)
                      |+.|++.+++.++..+..+....+++++.+   +++.               ++. .    +. ..++.++...+..++.
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~---------------~~~-~----~~-~~~~~~~~~~~~~~~~  217 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFSEFPALGKHA---PKAD---------------KPV-A----KE-KWGIGVLFLAIAALLY  217 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccccC---cccc---------------Ccc-c----cc-cCChHHHHHHHHHHHH
Confidence            999999888776654443332211111100   0000               000 0    11 1246667777777777


Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (535)
                      ....+.+..|+|.|+++.+|+++.+.+.+.+...++..+++++.++++||+++|+        .. .....+..+.+.+.
T Consensus       218 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------~l-~~~~~~~~~~~~~~  288 (394)
T PRK03699        218 ILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR--------IL-TVLAGLALVLMYLF  288 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh--------HH-HHHHHHHHHHHHHH
Confidence            7788889999999998889999999999999999999999999999999998652        11 22222222222222


Q ss_pred             hhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHH
Q 009409          429 SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAP  508 (535)
Q Consensus       429 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~  508 (535)
                      .. .++..+..+..++.|++.+...+.......+ ..++.++...|......++|..++|.+.|++.|..| +...++..
T Consensus       289 ~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~  365 (394)
T PRK03699        289 VN-TDDPSHLLYAILGLGFFSSAIYTTIITLGSQ-QTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTA  365 (394)
T ss_pred             HH-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhh
Confidence            22 2334444455566666655554444444444 345566788899999999999999999999999885 77777766


Q ss_pred             HHHHHHHHHhhhhh
Q 009409          509 SIFFYLTGTIVWLA  522 (535)
Q Consensus       509 ~~~~~~~~~~~~~~  522 (535)
                      +++.+++.++....
T Consensus       366 ~~~~~~~~~~~~~~  379 (394)
T PRK03699        366 NGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666554443333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=4.8e-34  Score=284.87  Aligned_cols=375  Identities=14%  Similarity=0.184  Sum_probs=275.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+..+.+..+..........+.+|.+.+++|.+..+.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            34556667777888888899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++.+ .+++++.+++.|++.|++.+...+....++.+++++++|++++++...+..+|..++|++++++.+..|||+.|+
T Consensus        83 ~l~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~  161 (382)
T PRK10091         83 AMFT-LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFL  161 (382)
T ss_pred             HHHH-HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHH
Confidence            7764 678889999999999999998888888999999998999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhh
Q 009409          274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (535)
Q Consensus       274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (535)
                      +.+++.++..+. ...+|+.+++.+     .+.    +                .. .+.++++..|......++...+.
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~----~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRDEAK-----GGL----R----------------EQ-FHFLRSPAPWLIFAATMFGNAGV  215 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcccc-----cCH----H----------------HH-HHHhcChHHHHHHHHHHHHHHHH
Confidence            998876655443 334444321100     000    0                00 23456777777666555555555


Q ss_pred             HHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 009409          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (535)
Q Consensus       353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (535)
                      +....+++.++.+.+|+++.+.+++.....++.++++++.+++.||+++++        . ......+.++..++.....
T Consensus       216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~--------~-~~~~~~~~~i~~~~~~~~~  286 (382)
T PRK10091        216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR--------I-AAVTDFIIVLALLMLFFFG  286 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh--------H-HHHHHHHHHHHHHHHHHHH
Confidence            666677788888778999999999999999999999999999999997641        1 2222222232222222112


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      +......+..++.+.+.....++......+. .+++..+.+  ..+....+|..+||.++|.+.|..++|...+...+++
T Consensus       287 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~  364 (382)
T PRK10091        287 GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL  364 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence            2223333333344444333333333223333 334445544  3467789999999999999999877798888887665


Q ss_pred             HHHHHHhhhhhccCC
Q 009409          512 FYLTGTIVWLAFASS  526 (535)
Q Consensus       512 ~~~~~~~~~~~~~~~  526 (535)
                      .++....+....++|
T Consensus       365 ~~~~~~~~~~~~~~~  379 (382)
T PRK10091        365 SFAAMSSLLLYGRYK  379 (382)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            555544444444333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.5e-33  Score=288.37  Aligned_cols=389  Identities=13%  Similarity=0.074  Sum_probs=272.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      ++.+....+..+...++...+.+..|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~  114 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            45555556666677777778889999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc--------
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--------  264 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--------  264 (535)
                      .++.+ .+++++.++++|++.|++.+... ....++++++|+++|++++|+......+|..+++.+.+.+..        
T Consensus       115 ~~~~~-~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        115 VFCMS-LVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             HHHHH-HhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            87765 56677888899999999987654 456678999999999999999988777887777666654432        


Q ss_pred             -ccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHH
Q 009409          265 -NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (535)
Q Consensus       265 -~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (535)
                       ..|||+.|++.+++.++..+..++++++.++...+  +.++    +.       +.++......+++.++++++|.+.+
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  259 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELKK----SG-------TMPKDSFSKVLRYGVTNYRTWILAL  259 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHHh----cC-------ccccccHHHHHHHHHcCchhHHHHH
Confidence             25899999999998877666656665443321100  0000    00       0000000112456778889888877


Q ss_pred             HHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 009409          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (535)
Q Consensus       344 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  423 (535)
                      ..++.....+.+..++|.|+.+.+|++..+++.+.++..++.++++++.|+++||+++|....  .|+....+...+.++
T Consensus       260 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~l~~i  337 (476)
T PLN00028        260 TYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQTLGGV  337 (476)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHHH
Confidence            777666666778889999998888999999999999999999999999999999998763211  123333333333333


Q ss_pred             HHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      .+.+... ..+.....+.+++.+++.+........ ....+.++++|++.|+.+..+++|+.++|.+.+  .+..++|..
T Consensus       338 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~  413 (476)
T PLN00028        338 FCIWLGR-ANSLGAAIVVMILFSIFVQAACGATFG-IVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTET  413 (476)
T ss_pred             HHHHhcc-cchHHHHHHHHHHHHHHHHHhhhhhcc-cCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhh
Confidence            2222222 222222333333444433322222222 223456788999999998887777777776654  222346888


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 009409          504 SLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~  522 (535)
                      +|++.+++.+++.++.++.
T Consensus       414 ~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        414 GISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhe
Confidence            9988887777666665554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=9.5e-34  Score=280.37  Aligned_cols=377  Identities=14%  Similarity=0.129  Sum_probs=275.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhc-ccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      ++.+.+..+.++..+.....+++..+.+.+ ++|+|.+|.+++.+++.+++.+++++.|++.||+|.|+++.++.+++++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            467777888888999999999999998766 8999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhh----hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc----
Q 009409          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII----  263 (535)
Q Consensus       192 ~~~~~~~~----~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~----  263 (535)
                      .+++.++.    .++++.+++.|++.|++ +..++.....+++++|+++||+++|+....+++|..++++++..+.    
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            88877643    16789999999999998 6688899999999999999999999997777777776666554432    


Q ss_pred             -c-------------ccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcH
Q 009409          264 -E-------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (535)
Q Consensus       264 -~-------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (535)
                       +             ..+||..+++.+++.++..+..++..++++..+.   ..                       ..+
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~---~~-----------------------~~~  245 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA---SI-----------------------ADQ  245 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---CH-----------------------HHH
Confidence             2             3347888888777776665555554333322110   00                       013


Q ss_pred             HHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhH
Q 009409          330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV  409 (535)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  409 (535)
                      +..+|+|+.|.+.+.+++....+.++..++|.|+++.+  +.........+..+...++++++|+++||+|++       
T Consensus       246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~-------  316 (462)
T PRK15034        246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV-------  316 (462)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch-------
Confidence            57899999999999999999888889999999998755  333333334455678889999999999999875       


Q ss_pred             HHHHHHHHHHHHHHHH-H-HhhhcCC--CcHHHHHH-HHHHHHHHhhhhhhhhhhhhhccCC------------------
Q 009409          410 RKICQTIAFLSPAVCM-T-LSSIDLG--LPHWEIVG-ILTAGLALSSFALSGLYCTHQDISP------------------  466 (535)
Q Consensus       410 ~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~------------------  466 (535)
                      + .. ...++...+.. . ......+  .+.+.... ++.+.++.+...-...-.+.+.+++                  
T Consensus       317 ~-vl-~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~  394 (462)
T PRK15034        317 R-VT-LINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR  394 (462)
T ss_pred             H-HH-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence            2 11 22222122211 1 1111111  12222222 2222222222222222223332332                  


Q ss_pred             ---cchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCC
Q 009409          467 ---EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK  527 (535)
Q Consensus       467 ---~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (535)
                         ++.|.+.|+....+.+|+++.|.+.|...+..|++...|+...+..+++.++.|..+.|+.
T Consensus       395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~  458 (462)
T PRK15034        395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK  458 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence               2688999999999999999999999999999999999999999999999888888887654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.3e-33  Score=286.64  Aligned_cols=387  Identities=17%  Similarity=0.149  Sum_probs=265.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccc-hhH-----HHHHHHHHHHhhhccchhhhcccCCchhhHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGL-----VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (535)
                      ++.+....+.+++.++|...++...|.+.++++.+.+. ..+     ..++.++++.++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            35666778889999999999999999999998754432 222     247778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhH--------HHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhh
Q 009409          187 LIWSLATALLPLLAGFMPG--------LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~--------l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (535)
                      +++++++++++ +++++..        ++++|+++|++.|..++...++++|++|+++|++..++...+..+|..+|+.+
T Consensus        95 ~l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         95 VIMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999998875 5666553        88999999999999999999999999999999999999998888888888876


Q ss_pred             HHHhc--------cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHH
Q 009409          259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (535)
Q Consensus       259 ~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (535)
                      ...+.        ..+|||+.|++.+++.++.+++...++|+++.....  ++   .  ++.   ..+. ..+.++.+++
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~--~~---~--~~~---~~~~-~~~~~~~~~~  242 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV--DK---L--EQG---DREG-LQDGPKVSFK  242 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH--Hh---h--hhh---cccc-ccccccCCHH
Confidence            65443        257999999997766555444444555543211000  00   0  000   0000 0011233456


Q ss_pred             Hhhhc-HHHHH-HHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 009409          331 AIFRS-KAVWA-MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (535)
Q Consensus       331 ~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  408 (535)
                      +++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++......++.+++.++.|+++||+|+|      
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr------  316 (490)
T PRK10642        243 EIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR------  316 (490)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------
Confidence            66653 23332 22334455677888899999999888899988888887888888999999999999999865      


Q ss_pred             HHHHHHHHHHHH-HHHHHH-HhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhH
Q 009409          409 VRKICQTIAFLS-PAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV  486 (535)
Q Consensus       409 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i  486 (535)
                         .....+.+. ....+. +......+....+++.++.+++.+...........+.+|++.|+++.|+.+.+..+++.+
T Consensus       317 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~  393 (490)
T PRK10642        317 ---PFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGL  393 (490)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHH
Confidence               122222221 111111 111112222333344444444444333333444556689999999999866667788899


Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhh
Q 009409          487 GVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVW  520 (535)
Q Consensus       487 gp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  520 (535)
                      +|.+.|++.+..+++...+++..++.++..+..+
T Consensus       394 ~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        394 TPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999998765555555444444444444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6e-34  Score=280.44  Aligned_cols=359  Identities=15%  Similarity=0.041  Sum_probs=259.9

Q ss_pred             HHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhH
Q 009409          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (535)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (535)
                      +......+++.+|.+.+|+|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..+...... ..+.....++++.
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAA-AAGRLLDPFNYEW   81 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH-HHHHHHHhccHHH
Confidence            456677889999999999999999999999999999999999999999999999887655544433 3333233367899


Q ss_pred             HHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHH-
Q 009409          206 LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS-  284 (535)
Q Consensus       206 l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~-  284 (535)
                      ++++|+++|++.+. .+.....+++++|+++|++++++...+..+|.++++++++++.+..|||+.|++.+++.++..+ 
T Consensus        82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            99999999999985 4566667799999999999999999999999999999999999999999999998888765543 


Q ss_pred             HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHH
Q 009409          285 GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFS  364 (535)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~  364 (535)
                      ..+.+||+++.+++.   .+.    +       +.      ..++++++++|.+|.+.+..++....++.+.+|+|.|++
T Consensus       161 ~~~~lp~~p~~~~~~---~~~----~-------~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~  220 (368)
T TIGR00903       161 VLAALPALPFQAAEG---FGF----K-------DA------VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR  220 (368)
T ss_pred             HHHHcCCCCCCCCCC---cch----H-------HH------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556544322110   000    0       00      012578899999999999999999999999999999997


Q ss_pred             HHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 009409          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT  444 (535)
Q Consensus       365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (535)
                      + .|++.. .+....+..+.+.++   .++++||..+++.     |+.......+..++.+..... ..+....+....+
T Consensus       221 ~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l  289 (368)
T TIGR00903       221 P-AGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAF-ELNRLALFAFIGI  289 (368)
T ss_pred             H-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHHH
Confidence            5 688865 566666666666655   4788888765422     112121122222222222222 2223333333333


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhh
Q 009409          445 AGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVW  520 (535)
Q Consensus       445 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  520 (535)
                      .+++.....+....+..+.+|++.||++.|+.+..+++|+.++|.+.|.+..   +....|.+.++..+++.+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       290 AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHH
Confidence            3443333334444566777899999999999999999999999999998884   356677777776666655553

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=2.6e-33  Score=284.09  Aligned_cols=377  Identities=14%  Similarity=0.145  Sum_probs=260.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccC---CCccchhHHHHH---HHHHHHhhhccchhhhcccCCchhhHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSS---FFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~s~---~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (535)
                      ++.+...++.+++.++|...++...|.+.++++   .+..+.+...++   .+++..++++++|+++||+|||+++..+.
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~  100 (432)
T PRK10406         21 IWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            345556667888899999999999999999985   455544444444   44455599999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhh--------hHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhh
Q 009409          187 LIWSLATALLPLLAGFM--------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL  258 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~~~--------~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (535)
                      +++++++++.+ +++++        ..++++|+++|++.|..++...++++|++|+++|++..++...+...|.++++++
T Consensus       101 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        101 CMMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999998875 44443        3689999999999999999999999999999999999999988888888888877


Q ss_pred             HHHhc--------cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHH
Q 009409          259 APPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWK  330 (535)
Q Consensus       259 ~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (535)
                      ...+.        +.+|||+.|++.++..++.+.....++|+++.+      + +             +.+   +..+++
T Consensus       180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~------~-~-------------~~~---~~~~~~  236 (432)
T PRK10406        180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE------T-R-------------ALK---EAGSLK  236 (432)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH------H-h-------------hhc---ccccHH
Confidence            65543        257999999988777665544433333322110      0 0             000   112467


Q ss_pred             HhhhcHHHHHHHHHHHH-HhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhH
Q 009409          331 AIFRSKAVWAMIYAHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV  409 (535)
Q Consensus       331 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  409 (535)
                      +++++++.+...+..++ ....++.+.+|+|.|+++.+|++..+.+.......++..++..+.|+++||+++|       
T Consensus       237 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr-------  309 (432)
T PRK10406        237 GLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR-------  309 (432)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-------
Confidence            78888888876665554 3667788899999999888899999998888888888889999999999999865       


Q ss_pred             HHHHHHHHHHHHHHHH-HHhhhcCCCcHHHHHHHHHHH-HHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh-hhhH
Q 009409          410 RKICQTIAFLSPAVCM-TLSSIDLGLPHWEIVGILTAG-LALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIV  486 (535)
Q Consensus       410 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i  486 (535)
                       +.......+...... ...........+..+.++..+ +..+...........+.+|++.|+++.|+.+.++++ .+..
T Consensus       310 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~  388 (432)
T PRK10406        310 -TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS  388 (432)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH
Confidence             122221111111111 111111111222222222222 222222223334456778999999999999988765 3455


Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          487 GVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       487 gp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      .|.+.+.+ +..|++...++..+++.++..+..++.
T Consensus       389 ~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        389 AEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            78888855 555667766666555555555554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=7.3e-34  Score=286.56  Aligned_cols=387  Identities=14%  Similarity=0.140  Sum_probs=277.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHH
Q 009409          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (535)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (535)
                      ++++.+..+.+.++..+++....++..|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45678888889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc--h
Q 009409          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--W  268 (535)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--w  268 (535)
                      ++.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+  |
T Consensus        89 ~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w  167 (405)
T TIGR00891        89 AGTLACG-FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW  167 (405)
T ss_pred             HHHHHHH-HhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence            8887764 567789999999999999999999999999999999999999999999999999999999999987766  9


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhc-cCCCCCcHHHhh-hcH-HHHHHHHHH
Q 009409          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG-ESLKDVPWKAIF-RSK-AVWAMIYAH  345 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~l~~  345 (535)
                      |+.|++.++..++..+....+|++++.......++......++.......... .+......++.. +++ .+..+.+..
T Consensus       168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (405)
T TIGR00891       168 RALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLV  247 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHH
Confidence            99999876666555555555555432211110000000000000000000000 000000011111 111 122233333


Q ss_pred             HHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM  425 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (535)
                      .+..........++|.|+.+.+|++..+.+.+.+...++.+++.++.+++.||+++|+         ....+.+...+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~  318 (405)
T TIGR00891       248 LFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK---------AYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh---------hhHHHHHHHHHHH
Confidence            4444445566788999998889999999999999999999999999999999998652         1222222221111


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      ........+.....+..++.++..............+..|+++++++.|+.+.+.++|+.++|.++|++.|..|+|...+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~  398 (405)
T TIGR00891       319 IPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL  398 (405)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence            11111122222333333444444444444455566777899999999999999999999999999999999987777665


Q ss_pred             HH
Q 009409          506 FA  507 (535)
Q Consensus       506 ~~  507 (535)
                      ..
T Consensus       399 ~~  400 (405)
T TIGR00891       399 AS  400 (405)
T ss_pred             Hh
Confidence            44

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=5.4e-33  Score=277.74  Aligned_cols=362  Identities=17%  Similarity=0.184  Sum_probs=270.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+..+.+..+..........+.+|.+.+++|.+..+.++..+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~   99 (394)
T PRK10213         20 SAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSC   99 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH
Confidence            44444444444444455556667899999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++.. .+++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++++.+.+|||+.|+
T Consensus       100 ~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~  178 (394)
T PRK10213        100 LLVS-FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFN  178 (394)
T ss_pred             HHHH-HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            7765 578889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh-hcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhh
Q 009409          274 IFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (535)
Q Consensus       274 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (535)
                      +.+++.+++.+... ..|++++++    .+.                      ....++.+++|.++...+..++.....
T Consensus       179 ~~~~l~~~~~l~~~~~~p~~~~~~----~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~  232 (394)
T PRK10213        179 AAAVMGVLCIFWIIKSLPSLPGEP----SHQ----------------------KQNTFRLLQRPGVMAGMIAIFMSFAGQ  232 (394)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCccc----ccc----------------------hhHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            98877665443332 234321100    000                      011356788999988777666666666


Q ss_pred             HHHHHhh-HHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          353 YTCLSWL-PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       353 ~~~~~~~-p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      +....++ |.|. +.+|+++.+.+.+....+++.+++..+.+++.||.++         +.......+.....+.+... 
T Consensus       233 ~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~---------~~l~~~~~~~~~~~~~l~~~-  301 (394)
T PRK10213        233 FAFFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK---------LALAGAPLVLAVSALVLTLW-  301 (394)
T ss_pred             HHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHH-
Confidence            6766776 5555 5679999999999999999999999999999998432         12222222222222222222 


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      ..+.+......++.|++.+...+.....+.+..+ ++.+++.+......++|..+||.++|.+.|..| +...+...+++
T Consensus       302 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~  379 (394)
T PRK10213        302 GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTL  379 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHH
Confidence            2233444455666777776666666666666664 667788888888889999999999999999875 65566555443


Q ss_pred             HHHH
Q 009409          512 FYLT  515 (535)
Q Consensus       512 ~~~~  515 (535)
                      .++.
T Consensus       380 ~~~~  383 (394)
T PRK10213        380 MLLT  383 (394)
T ss_pred             HHHH
Confidence            3333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.5e-33  Score=286.44  Aligned_cols=406  Identities=15%  Similarity=0.208  Sum_probs=282.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+..+.+.+...+.++..+....|.+.+ +|++..+.+++.+++.++..++++++|+++||+|||+++..+.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            3556666667777788888888888888776 599999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhh---hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc-cccc
Q 009409          192 ATALLPLL---AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG  267 (535)
Q Consensus       192 ~~~~~~~~---~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g  267 (535)
                      +.++....   .+++..+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|..+++.+.+... ...+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            87765432   2456678889999999999999989999999999999999999999999999999988877644 3579


Q ss_pred             hhHHHHHHHHHHHHHH-HHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHH
Q 009409          268 WESVFYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (535)
                      ||+.|++.+++.++.. +..++++++++....+..++.+. +..+..... .+.+.+.++...+.+++++.+|...+..+
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNEK-AEQELTAKEIFMQYVLPNKLLWYIAIANV  261 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccccccc-cccccchHHHHHHHHccCchHHHHHHHHH
Confidence            9999999888876654 44444555433211111000000 000000000 00000000111234678999999888888


Q ss_pred             HHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Q 009409          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (535)
Q Consensus       347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (535)
                      +.....+++.+++|.|+++.+|+++.+++++..+..+++++++++.|++.||+++++.      ............+...
T Consensus       262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~------~~~~~~~~~~~~~~~~  335 (438)
T TIGR00712       262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR------GATGVFFMTLVTIAVI  335 (438)
T ss_pred             HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHHH
Confidence            8888888899999999998889999999999999999999999999999999965421      1111111111111111


Q ss_pred             Hhhhc-CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhh-hHHHHHHHHHhcccCcchHH
Q 009409          427 LSSID-LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPG-IVGVALTGYLLDSTHSWSMS  504 (535)
Q Consensus       427 ~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~igp~i~G~l~~~~g~~~~~  504 (535)
                      ..... ..+........+..+.+.............+..+++.+|++.|+.+...++|+ +++|.+.|.+.|..| |...
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~  414 (438)
T TIGR00712       336 VYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGG  414 (438)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHH
Confidence            11111 12222222233333333222111112234566788999999999999988875 689999999999885 8888


Q ss_pred             HHHHHHHHHHHHHhhhhhccCCC
Q 009409          505 LFAPSIFFYLTGTIVWLAFASSK  527 (535)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~  527 (535)
                      +.+.+++.+++.+..+...++.|
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       415 FMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Confidence            88777766666666555555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=1.1e-33  Score=287.79  Aligned_cols=397  Identities=15%  Similarity=0.167  Sum_probs=286.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +|.++..+.+..+..+.....++.+.|.+.+++|.+.++.+++.+.+.++..++.+++|+++||+|||++++.+.+++++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            45666666666666666667788889999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhhhhhhhHHHH-HHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhH
Q 009409          192 ATALLPLLAGFMPGLVL-SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (535)
                      +.++.+ .+++++.+++ .|++.|++.+...+....++.++++ ++|++++++...+..+|..++|++++.+.+..|||+
T Consensus        97 ~~~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~  174 (455)
T TIGR00892        97 GMILAS-FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG  174 (455)
T ss_pred             HHHHHH-HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence            887764 5666676654 5789999998877777888889996 799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCc-chhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHh
Q 009409          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (535)
Q Consensus       271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (535)
                      .|++.+++.++..+..+++.+.++.......+ ++.................++..+....+++++|.++...+..++..
T Consensus       175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMF  254 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHH
Confidence            99999988765554444443322111000000 00000000000000000000001111125778999998888888888


Q ss_pred             hhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 009409          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (535)
                      .+.+....++|.|+++ +|++..+++++.++.+++.++++++.+++.||...++.     ++.....+.+..++.+++..
T Consensus       255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~l~~ll~~  328 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNGLTHLLCA  328 (455)
T ss_pred             HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999975 69999999999999999999999999999997421100     22222222222222222222


Q ss_pred             hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHH
Q 009409          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPS  509 (535)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~  509 (535)
                      . ..+....++..++.|++.+...+.......+.+++++++++.|++++..++|.++||.++|.+.+..|+|...|++.+
T Consensus       329 ~-~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       329 L-AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             H-hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence            2 233344455566677776666666666777778999999999999999999999999999999998877888888877


Q ss_pred             HHHHHHHH
Q 009409          510 IFFYLTGT  517 (535)
Q Consensus       510 ~~~~~~~~  517 (535)
                      ++.+++.+
T Consensus       408 ~~~li~~~  415 (455)
T TIGR00892       408 SIVVSAGL  415 (455)
T ss_pred             HHHHHHHH
Confidence            76555444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-33  Score=263.81  Aligned_cols=382  Identities=20%  Similarity=0.250  Sum_probs=303.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+.+..++....++.+..+++..+.+.+++|+|..|.+++.++..+...+..++.|.+.||+|.|++..++.++..+
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHH
Confidence            45777777788888889999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhhhh--hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc--
Q 009409          192 ATALLPLLAGF--MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--  267 (535)
Q Consensus       192 ~~~~~~~~~~~--~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--  267 (535)
                      ..+..++..++  ++.+++++++.|++.+ .+.+....++.+|||+++|.++|++. .+++|..+..+++..+....|  
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~  169 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL  169 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence            88777644333  3499999999999965 45678899999999999999999999 999999999999999998888  


Q ss_pred             -hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHH
Q 009409          268 -WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (535)
Q Consensus       268 -w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (535)
                       |+....+..+..++..+..++..++.++.+...++..                     ..+++.++++++.|.+.+.++
T Consensus       170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~~~~~~v~~~~~~W~lsllY~  228 (417)
T COG2223         170 AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------PAQLKAVFSNKDTWLLSLLYF  228 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------hhHHHHHhcCcchHHHHHHHH
Confidence             9999998888777765555555444433211111100                     023578889999999999999


Q ss_pred             HHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Q 009409          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (535)
Q Consensus       347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (535)
                      ....++.++..++|.|++++||.++.++|.+.....+.+.+.++++|+++||+|.+|+       .  ...+..++++..
T Consensus       229 ~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-------~--~~~f~~~~~~~~  299 (417)
T COG2223         229 ATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-------T--LAVFVGMALAAA  299 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-------H--HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997622       2  222222333332


Q ss_pred             HhhhcC------CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCc
Q 009409          427 LSSIDL------GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS  500 (535)
Q Consensus       427 ~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~  500 (535)
                      +.....      .+.......++.+++..+. ......-....+.+++.|.+.|+...++++|+..-|...|...+..|+
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~-GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGL-GNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhcc-CcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            222222      2222333333444444333 333333333345667899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhccCC
Q 009409          501 WSMSLFAPSIFFYLTGTIVWLAFASS  526 (535)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (535)
                      +...|.+...+.+++.+..+..+.|+
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998888888888777765

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.2e-32  Score=277.57  Aligned_cols=363  Identities=15%  Similarity=0.115  Sum_probs=276.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      ++...+.+.+..+...++...+.+.+|.+.+++|.|..+.++..+.+.+++.++.++.|+++||+|||+++..+.++.++
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            44555666667777778888899999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      +.++.. .+++++.+++.|++.|++.+...+...+.+.|.+|+++|++.+++......+|..++|.+++.+.++.+||+.
T Consensus        91 ~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~  169 (406)
T PRK15402         91 TCLAIL-LAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGM  169 (406)
T ss_pred             HHHHHH-HHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHH
Confidence            887764 5677889999999999999988888999999999999999999999998899999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhh
Q 009409          272 FYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (535)
Q Consensus       272 f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (535)
                      |++.+++.++..+.. ...|+++++.+++    ...   ++             ....++.++++|.++...+..++...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (406)
T PRK15402        170 FVLFAALAALSFFGLWRAMPETAGRVGEK----LSL---KE-------------LGRDYKLVLKNRRFVAGALALGLVSL  229 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcccccc----ccH---HH-------------HHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            999888776655433 3344432211110    000   00             01124678899999888777777776


Q ss_pred             hhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 009409          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (535)
Q Consensus       351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (535)
                      ..+....+.|.++.+.+|+++.+.+.......++.+++.++.+++.||++++        + ....+.+...+...+...
T Consensus       230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~--------~-~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR--------S-LIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------H-HHHHHHHHHHHHHHHHHH
Confidence            6667777889999888999999999888878888899999999999999764        1 222222222222222111


Q ss_pred             ----cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          431 ----DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       431 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                          ......+.++..++.+++.+...+...... ...+++++|++.+.++....+|..+|+.+.|.+++..+.+...+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~  378 (406)
T PRK15402        301 ATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNL  378 (406)
T ss_pred             HHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence                122334445556666666665444433333 33456899999999999999999999999999999876554333

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.6e-33  Score=284.44  Aligned_cols=368  Identities=17%  Similarity=0.179  Sum_probs=265.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+..+.+.++...++.....+..|.+.+++|+|..+.+++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~   95 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV   95 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            45666777788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      +.++.+ .+++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+..|||+.
T Consensus        96 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~  174 (426)
T PRK12307         96 GTGLSG-LASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA  174 (426)
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence            887765 6677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH---HHH
Q 009409          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH---FCG  348 (535)
Q Consensus       272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~  348 (535)
                      |++..+..++.+......|++++...++..++           .+..+...+.....++++++++.++...+..   ++.
T Consensus       175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
T PRK12307        175 FFVGLLPVLLVIYIRARAPESKEWEEAKLSGK-----------GKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI  243 (426)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-----------ccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            99855433332222222222211000000000           0000000000112456778888776543322   222


Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (535)
                      ....+.+..++|.|+++ .|+++.+.+.+.+...++.++++++.+++.||+++|         .....+.+...+.....
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~  313 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK---------KTFSIGLLMSFLFIFPL  313 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHH
Confidence            33334567889999975 599999999999999999999999999999999754         22223332222222222


Q ss_pred             hhcCCCcHHHHHHHHHHHHHH--hhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          429 SIDLGLPHWEIVGILTAGLAL--SSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       429 ~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      ......... ....+..+...  ............+.+|++++|++.|+.+.+..+|+.++|.+.|++.+..| +..
T Consensus       314 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~  388 (426)
T PRK12307        314 FRIPQDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGA  388 (426)
T ss_pred             HHHccccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHH
Confidence            211222222 22222233222  11222233445677889999999999999999999999999999999885 443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=2.4e-33  Score=279.84  Aligned_cols=358  Identities=17%  Similarity=0.181  Sum_probs=270.5

Q ss_pred             HHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhh
Q 009409          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (535)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (535)
                      +.......+++..|.+.+++|+|..+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.++.+ .+++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~~~~   92 (377)
T TIGR00890        14 FTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IADSLA   92 (377)
T ss_pred             HHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH-HHHHHH
Confidence            3444567788999999999999999999999999999999999999999999999999999999999887764 677889


Q ss_pred             HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHH
Q 009409          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (535)
Q Consensus       205 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~  284 (535)
                      .++++|++.|++.+...+.....+.+++| ++|++++++...+..+|..+++++.+.+.+..|||+.|++.+++.++..+
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888888887 68999999999999999998887877777788999999999988776655


Q ss_pred             Hhhh-cccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 009409          285 GFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF  363 (535)
Q Consensus       285 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l  363 (535)
                      .... +++++++..++..+.                   ..++...++.++++.++...+..++..........+.+.|.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (377)
T TIGR00890       172 LGAFLIGYPPGQLIKTNIEV-------------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG  232 (377)
T ss_pred             HHHHheecCchhccccCccc-------------------chhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4443 333322111100000                   00011235677888888877777776666666667777777


Q ss_pred             HHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcH-HHHHHH
Q 009409          364 SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH-WEIVGI  442 (535)
Q Consensus       364 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  442 (535)
                      + .+|.+..+.+.+.+...++.++++++.+++.||+++|+         ....+.....+...+......... ..+...
T Consensus       233 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T TIGR00890       233 Q-SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK---------TMSIVFGISAVGMAAMLFIPMLNDVLFLATV  302 (377)
T ss_pred             H-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            5 57899989999999999999999999999999998652         222333333333333222222122 222333


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHH
Q 009409          443 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL  514 (535)
Q Consensus       443 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~  514 (535)
                      ++.+++.+...........+.+++++++++.|+.+...++|..++|.+.|.+.+..| |...|.+.+++.++
T Consensus       303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~  373 (377)
T TIGR00890       303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHH
Confidence            445555554444444556677899999999999999999999999999999999885 88888776665444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=7.5e-34  Score=283.66  Aligned_cols=374  Identities=18%  Similarity=0.212  Sum_probs=276.3

Q ss_pred             HHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhh
Q 009409          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA  200 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~  200 (535)
                      +.++..+.++..+++..|.+.+++|.+..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.++.. .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~   80 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FS   80 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-Hh
Confidence            35667888999999999999999999999999999999999999999999999999999999999999888887775 56


Q ss_pred             hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHh-hhHHHhccccchhHHHHHHHHHH
Q 009409          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGL-LLAPPIIENLGWESVFYIFGLLG  279 (535)
Q Consensus       201 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~gw~~~f~~~~~~~  279 (535)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++| .+++.+.+..+||+.|++.+++.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999 57777777889999999988877


Q ss_pred             HHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHh
Q 009409          280 IAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (535)
Q Consensus       280 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (535)
                      ++..+.. +..+++++.......+++.....++  ..+.++.+.+..+..++.++++|.++.+.+..++.......+..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDG--DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDW  238 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCccccccc--ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            6554433 3444433221111111100000000  000000001111223567788999999888888888888889999


Q ss_pred             hHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc-CCCcHH
Q 009409          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-LGLPHW  437 (535)
Q Consensus       359 ~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  437 (535)
                      .|.|+++.+|++..+.+.+.....++.++++++.+++.||..+++.      ..............+...... ..+..+
T Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
T TIGR00881       239 SPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR------GPLAVFFMALIIVSLLVYWLNPAANPLM  312 (379)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence            9999998899999999999999999999999999999999754421      111111111111111111111 112223


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHH
Q 009409          438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMS  504 (535)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~  504 (535)
                      ..+..++.|...............+..|+++|+++.|+.+....+|+.++|.+.|.+.|..| |...
T Consensus       313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~  378 (379)
T TIGR00881       313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAGA  378 (379)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-cccc
Confidence            33334444444333333344456677899999999999999999999999999999999874 6543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.7e-32  Score=275.85  Aligned_cols=373  Identities=17%  Similarity=0.157  Sum_probs=271.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      +.+..+.+..++..++.....+.+|. +.+++|.|..+.|++.+++.+++.++++++|+++||+|||++++.+.++++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            55666778888888999999999997 67889999999999999999999999999999999999999999999887776


Q ss_pred             HHHHHhh--h-----hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc
Q 009409          193 TALLPLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (535)
Q Consensus       193 ~~~~~~~--~-----~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (535)
                      .++....  .     .++..+++.|+++|++.+...+....++.+++++++|++++++...+..+|.++|+.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            5544322  1     14567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH
Q 009409          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (535)
Q Consensus       266 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (535)
                      .||++.+++.+++.++..+.....++.++   .+ .++                       .++++.++  +++......
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-----------------------~~~~~~~~--~~~~~~~~~  225 (399)
T PRK05122        175 GGLAGLGLLIMLLALLGLLLARPRPAVPP---VK-GER-----------------------LPFRRVLG--RVWPYGMGL  225 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CC-ccc-----------------------hhHHHHHH--HHHHHHHHH
Confidence            99999988876665443333222221110   00 000                       01122222  122222233


Q ss_pred             HHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM  425 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (535)
                      .+....+.....++|.|+.+ .|.+  ..+.......++.++++++.+++.||++++        + ....+.....+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--------~-~~~~~~~~~~~~~  293 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRLGGL--------R-VAIVSLLVEILGL  293 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccH--------H-HHHHHHHHHHHHH
Confidence            34445556677888888865 4653  456666778888899999999999998754        2 2222333333333


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      .+... .++....++..++.|++.+...+.......+..+++++|++.|+++....+|..++|.+.|.+.+..| +...+
T Consensus       294 ~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~  371 (399)
T PRK05122        294 LLLWL-APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIF  371 (399)
T ss_pred             HHHHH-hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            33222 23334444555667777666555555556677889999999999999999999999999999999875 88888


Q ss_pred             HHHHHHHHHHHHhhhhhccCCCCC
Q 009409          506 FAPSIFFYLTGTIVWLAFASSKPQ  529 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~  529 (535)
                      .+.+++.+++.++.+...++++++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        372 LAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHHHHHhccccccc
Confidence            887776666665555554444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=1.6e-33  Score=284.83  Aligned_cols=380  Identities=13%  Similarity=0.044  Sum_probs=279.3

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHh-
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-  198 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-  198 (535)
                      .+..++..++.....+.+|.+.++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.... 
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         23 FIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence            3345566677778888899999999999999999999999999999999999999999999999988777766554432 


Q ss_pred             ---hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHH
Q 009409          199 ---LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIF  275 (535)
Q Consensus       199 ---~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  275 (535)
                         ..++++.+++.|++.|++.+...+...+++.+++|+++|+++.++......+|..+||.+++.+.+..+|++.|++.
T Consensus       103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~  182 (417)
T PRK10489        103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA  182 (417)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence               14567888899999999988888888999999999999999999999999999999999999999888999999998


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHH
Q 009409          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (535)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (535)
                      ++..++..+..+.+|++++++.+.    ++..          ++     ....++..+++|.++...+..++... ....
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (417)
T PRK10489        183 AAGTFITLLPLLRLPALPPPPQPR----EHPL----------RS-----LLAGFRFLLASPVVGGIALLGGLLTM-ASAV  242 (417)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCccc----ccch----------HH-----HHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence            877766666666666543221110    0000          00     00124566778887666555544333 3567


Q ss_pred             HHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 009409          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP  435 (535)
Q Consensus       356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (535)
                      ..++|.|+++.+|+++...|++.+...++.+++.++.+++.||.+++         .....+.+..++.+.+... .++.
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~-~~~~  312 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGL-MPMW  312 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHc-cchH
Confidence            78899999887899999999999999999999999999999874322         1222223333333333322 2223


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Q 009409          436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~  515 (535)
                      ....+..++.|++.+...+.......+..|++.||+++|+++...++|..+||.+.|.+.+..| +...+...+++.++.
T Consensus       313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~  391 (417)
T PRK10489        313 ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLII  391 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHH
Confidence            3334455556665554444444556666888899999999999999999999999999999885 566666666666665


Q ss_pred             HHhhhhhccCCCCCC
Q 009409          516 GTIVWLAFASSKPQN  530 (535)
Q Consensus       516 ~~~~~~~~~~~~~~~  530 (535)
                      +++++...++.|+++
T Consensus       392 ~~~~~~~~~~~~~~~  406 (417)
T PRK10489        392 GVLLLLVLGELRRFR  406 (417)
T ss_pred             HHHHHHhcccccccc
Confidence            566555555444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.2e-32  Score=273.56  Aligned_cols=357  Identities=14%  Similarity=0.082  Sum_probs=278.8

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHh
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (535)
                      +.+..++..++.....+.+|.+..+++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+++..+...
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            44667777888888899999999999999999999999999999999999999999999999999998888777766653


Q ss_pred             hh----hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHH
Q 009409          199 LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (535)
Q Consensus       199 ~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  274 (535)
                      ..    .+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|||+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~  163 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV  163 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33    17789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHH
Q 009409          275 FGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (535)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (535)
                      .++..++..+....++.+++++.+..+.+++.   .       ++     ....++..+++|.++...+..++.......
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (365)
T TIGR00900       164 DAVGFAISALLIVSVRIPELAASEIQALSNAV---L-------RD-----TREGIKFVLKNPLLRTLLLLALLFNLVFAP  228 (365)
T ss_pred             HHHHHHHHHHHHHhcccccCCCccccccchhH---H-------HH-----HHhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            88766655444444433222111111000000   0       00     011346778899998888877777777776


Q ss_pred             HH-HhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009409          355 CL-SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG  433 (535)
Q Consensus       355 ~~-~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (535)
                      .. .+.|.|.++.+|.+..+.+.+.....++.+++.++.+++.||++++         .....+....++.........+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  299 (365)
T TIGR00900       229 AIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVGLTPP  299 (365)
T ss_pred             HHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHHhhch
Confidence            66 8899999877899999999999999999999999999999998754         2222333333333333332222


Q ss_pred             CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      +.....+..++.|++.+...+.......+.+|+++|+++.|+.++..+++..++|.++|.+.|..|
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            233444556667777776666677777888999999999999999999999999999999998753

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=4.3e-32  Score=278.96  Aligned_cols=374  Identities=20%  Similarity=0.218  Sum_probs=279.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+..+++..++..++.+.+++.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            34556677888888999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++.. .+++++.+++.|+++|++.+...+...+++.+++|+++|++++++.....++|..+||.+++.+.++.|||+.|+
T Consensus        90 ~~~~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         90 LFCA-LSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHH-HhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            7664 567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhh-------------hhhh--hhhh-----------------hHHHhc
Q 009409          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI-------------NMKK--SLSA-----------------SLEEMG  321 (535)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~-----------------~~~~~~  321 (535)
                      +......+..+......++.+.... +.+.....             ...+  .+..                 ..++..
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN  247 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9877665554444333222211111 11100000             0000  0000                 000111


Q ss_pred             cCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 009409          322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (535)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (535)
                      ...+..+. +++|||.++...+..++...+......+.|.|++..+|.++.+++++.....++.+++.++.+++.||+++
T Consensus       248 ~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~  326 (471)
T PRK10504        248 NNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGY  326 (471)
T ss_pred             CCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            11112233 57899999988888888888877778889999987789999999999988888888888999999999986


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHhhh-cCCCcHH-HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHh
Q 009409          402 TGVETTMVRKICQTIAFLSPAVCMTLSSI-DLGLPHW-EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTV  479 (535)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  479 (535)
                      |         .....+.+..++...+... ......+ ..+..++.|++.+...........+.++++.++.++|+.++.
T Consensus       327 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  397 (471)
T PRK10504        327 R---------RVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI  397 (471)
T ss_pred             h---------HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence            4         2222333323322222222 1122222 233444555655555555566666778999999999999999


Q ss_pred             hhhhhhHHHHHHHHHhcccC
Q 009409          480 GAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       480 ~~lg~~igp~i~G~l~~~~g  499 (535)
                      ..+|..+|+.++|.+.+..|
T Consensus       398 ~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        398 MQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988764

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=4.8e-32  Score=272.30  Aligned_cols=379  Identities=12%  Similarity=0.087  Sum_probs=270.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+....++.++..+......+.++.+.+++|.|..+.|++.+.+.+++.++.+++|++.||+|||+++..+.++++++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~   92 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGH   92 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            34445555555666666666667777778999999999999999999999999999999999999999999999888876


Q ss_pred             HHHHh---hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHH-HHHhhhHHHhccccchh
Q 009409          194 ALLPL---LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS-VAGLLLAPPIIENLGWE  269 (535)
Q Consensus       194 ~~~~~---~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~gw~  269 (535)
                      ++...   ..++++.+++.|++.|++.+...+...+.+.+++|+++|++++|+..++.++|. +++|++++++.+..||+
T Consensus        93 ~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897        93 AAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            54421   235677888999999999888777788888899999999999999999999996 68999999999888977


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHh
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (535)
                      ..+|......++..+...++.+++++++.+ +++++.   +        +     ....++.++++|.++...+..++..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~  235 (402)
T TIGR00897       173 NTLWSALAFVLTGGVIALFSNKDIFTPQHM-QTREKF---S--------E-----LGKAATILFTNPNVLLGGMVRIINT  235 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCcccc-cCCcch---h--------h-----HHHHHHHHHcChhHHHHHHHHHHHH
Confidence            666654443333222222222221111100 000000   0        0     0012457889999998888888888


Q ss_pred             hhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH---HHHH
Q 009409          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA---VCMT  426 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  426 (535)
                      ...+++.++.|.|+++ +|++..+.+.+.....++.+++.++.|+++||+++|+        .......+...   ..+.
T Consensus       236 ~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~--------~~~~~~~l~~~~~~~~l~  306 (402)
T TIGR00897       236 IGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN--------TVRWFGGVGCGIFTLALY  306 (402)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHHHHHHHH
Confidence            8888999999999965 7999999999889999999999999999999998652        11111111111   1111


Q ss_pred             Hhhh-cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          427 LSSI-DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       427 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      .... ..++....++..++.|++.+...+ .... ..+.+|++||++.|+.+....+|+.++|.++|.+.|..| +...+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~-~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~  383 (402)
T TIGR00897       307 YIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAV-FPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVV  383 (402)
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHH-HHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHH
Confidence            1111 112233344455556665554432 2333 344678899999999999999999999999999999985 77777


Q ss_pred             HHHHHHHHHHHHhhhh
Q 009409          506 FAPSIFFYLTGTIVWL  521 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~  521 (535)
                      .+.+++.+++.++..+
T Consensus       384 ~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       384 WIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777766666555444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=9.7e-33  Score=285.18  Aligned_cols=372  Identities=21%  Similarity=0.222  Sum_probs=288.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+..+++..++..++....++.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            45667778888999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++.+ .+++++.+++.|+++|++.+...+...+++.|++|+++|+++++++.....+|..+||.+++++.++.|||+.|+
T Consensus        82 ~~~~-~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        82 LLCG-VAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHHh-CcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            7774 678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-hhcccCCCCCCCCCCcchhh---------------hhhhhhhhhh------------------HHH
Q 009409          274 IFGLLGIAWFSGF-KILQEGETSNGATLAPRSNY---------------INMKKSLSAS------------------LEE  319 (535)
Q Consensus       274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~------------------~~~  319 (535)
                      +.+++.++..+.. +.++++++...+ ..+....               ...+..+.++                  ..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASE-NFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE  239 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccC-CCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9887766554433 334443222111 1111000               0000000000                  001


Q ss_pred             hccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 009409          320 MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (535)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (535)
                      ..++.+..+ .+.+++|.++...+..++.....+....++|.|+++.+|+++.+++++..+..++.+++.++.|++.||+
T Consensus       240 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~  318 (485)
T TIGR00711       240 LTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI  318 (485)
T ss_pred             HcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            111111111 3678889998888888888888899999999999988999999999999999999999999999999999


Q ss_pred             HHcCCCchhHHHHHHHHHHHHHHHHHHHhh--hcCCCcH-HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH
Q 009409          400 IATGVETTMVRKICQTIAFLSPAVCMTLSS--IDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGIT  476 (535)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  476 (535)
                      ++|         .....+....++...+..  ...+... ......++.|++.+....+......+..|+++++++.|+.
T Consensus       319 ~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~  389 (485)
T TIGR00711       319 DPR---------KLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLS  389 (485)
T ss_pred             CcH---------HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHH
Confidence            754         223333333333333332  2222232 3344456677777666666666666778999999999999


Q ss_pred             HHhhhhhhhHHHHHHHHHhcc
Q 009409          477 NTVGAVPGIVGVALTGYLLDS  497 (535)
Q Consensus       477 ~~~~~lg~~igp~i~G~l~~~  497 (535)
                      ++.+.+|+.+|+.+.|.+.+.
T Consensus       390 ~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       390 NFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.2e-31  Score=271.99  Aligned_cols=384  Identities=17%  Similarity=0.134  Sum_probs=264.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHhhhhh-hhccc--CCCccchhHHH-----HHHHHHHHhhhccchhhhcccCCchh
Q 009409          110 PQRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRF--GWNSSVAGLVQ-----SSFFWGYALSQLPGGWLAKIFGGRKV  181 (535)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~g~r~~  181 (535)
                      +++++.+....+.+++.++|...++...|. +.+++  +.++. .+++.     ++.+++..+++++.|+++||+|||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            335577777888889999999999988775 55555  66666 45553     34556677889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhh--------HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHH
Q 009409          182 LQTGVLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSV  253 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  253 (535)
                      +..+.+++++++++.+ +++++.        .++++|+++|++.+..++....++.|++|+++|++..+....+..+|.+
T Consensus        97 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~  175 (438)
T PRK09952         97 LMLTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL  175 (438)
T ss_pred             HHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            9999999999998875 566655        5889999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHhc--------cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCC
Q 009409          254 AGLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLK  325 (535)
Q Consensus       254 ~g~~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (535)
                      +++.+...+.        +.+|||+.|++.++..++........||+++....    +.+    .       +  +.+.+
T Consensus       176 l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~----~~~----~-------~--~~~~~  238 (438)
T PRK09952        176 LSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQ----QHE----Q-------A--AAKKR  238 (438)
T ss_pred             HHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHH----Hhh----c-------c--ccccc
Confidence            9888776654        25799999998877654433332233332211000    000    0       0  00000


Q ss_pred             CCcHHHhhhcHHHHHHHH-HHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Q 009409          326 DVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV  404 (535)
Q Consensus       326 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  404 (535)
                      ....+.++++|+.+...+ ..++.....+....|.|.|+++.+|++......+....++..+++.++.|+++||+++|  
T Consensus       239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr--  316 (438)
T PRK09952        239 IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR--  316 (438)
T ss_pred             CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--
Confidence            111234667777766543 45556667788889999999888899887665566666777888899999999999865  


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH-H-hhhcCCCcHHH-HHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhh-
Q 009409          405 ETTMVRKICQTIAFLSPAVCMT-L-SSIDLGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-  480 (535)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-  480 (535)
                           + .. ..+.+...+... . ......+..+. +...++.+++.+...........+.+|++.|+++.|+.+..+ 
T Consensus       317 -----~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~  389 (438)
T PRK09952        317 -----R-VY-ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVAS  389 (438)
T ss_pred             -----H-HH-HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHH
Confidence                 2 21 222222222111 1 11112222332 223333445544444445556677789999999999976655 


Q ss_pred             hhhhhHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHhhhh
Q 009409          481 AVPGIVGVALTGYLLDST-HSWSMSLFAPSIFFYLTGTIVWL  521 (535)
Q Consensus       481 ~lg~~igp~i~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~  521 (535)
                      .+|+.++|.+.|++.+.. ++|...+.+.+++.++..+..+.
T Consensus       390 ~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        390 VVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999865 45777777766666655555443

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.2e-31  Score=271.94  Aligned_cols=359  Identities=14%  Similarity=0.107  Sum_probs=248.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHH-HHHH-----HHHHhhhccchhhhcccCCchhhHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQ-SSFF-----WGYALSQLPGGWLAKIFGGRKVLQTG  185 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~-s~~~-----~~~~~~~~~~g~l~dr~g~r~~~~~~  185 (535)
                      |++....+++..++.++|+..++...|.+.++++.+..+.+.+. +...     +...+++++.|+++||+|||+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            45678888899999999999999999999999999888765443 3222     22246789999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhh--------HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhh
Q 009409          186 VLIWSLATALLPLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (535)
                      .++++++.++++ ++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.
T Consensus        93 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         93 LSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            999999998876 555655        46899999999999999999999999999999999999999988888888888


Q ss_pred             hHHHhc--------cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcH
Q 009409          258 LAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (535)
Q Consensus       258 ~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (535)
                      +++.+.        +..|||++|++..+...+........+|+++           ....++         +.+ .+..+
T Consensus       172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~-----------~~~~~~---------~~~-~~~~~  230 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEE-----------FLARKH---------RPS-MREIF  230 (434)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHH-----------HHHhhh---------ccc-cccHH
Confidence            877663        4679999999754432222211111111100           000000         000 01123


Q ss_pred             HHhhhcHHHHHH-HHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 009409          330 KAIFRSKAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (535)
Q Consensus       330 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  408 (535)
                      +...++++.+.. .+..++.....+.+..|.|.|+++.+|++..+.+++..+..++++++.++.|+++||+++|      
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r------  304 (434)
T PRK15075        231 RSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR------  304 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence            344555555544 3334445566777889999999988899999999888888999999999999999999865      


Q ss_pred             HHHHHHHHHHHHHHHHHH-H-hhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh-hhh
Q 009409          409 VRKICQTIAFLSPAVCMT-L-SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGI  485 (535)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~  485 (535)
                        +............... . ...............++.+++.+...........+..|++.|+++.|+.+.++.. ++.
T Consensus       305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~  382 (434)
T PRK15075        305 --PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGG  382 (434)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhh
Confidence              2222111111111111 1 1111122222222233344444444444445567778999999999997655554 588


Q ss_pred             HHHHHHHHHhcccCc
Q 009409          486 VGVALTGYLLDSTHS  500 (535)
Q Consensus       486 igp~i~G~l~~~~g~  500 (535)
                      ++|.+.|.+.|..|.
T Consensus       383 ~~p~~~g~i~~~~g~  397 (434)
T PRK15075        383 FTPAISTWLIHVTGD  397 (434)
T ss_pred             hHHHHHHHHHHhcCC
Confidence            899999999998863

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.5e-32  Score=281.58  Aligned_cols=405  Identities=18%  Similarity=0.190  Sum_probs=274.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCC--------ccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWN--------SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (535)
                      ..+++.+..+...++...+.+.+|.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||++++.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~  108 (481)
T TIGR00879        29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA  108 (481)
T ss_pred             HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence            333444555666778888888899888888777        899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh--hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhH---HH
Q 009409          187 LIWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA---PP  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~  261 (535)
                      +++.++.++......  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++++++   +.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~  188 (481)
T TIGR00879       109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS  188 (481)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            998888877643333  2348999999999999999999999999999999999999999999999999999999   66


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhh---------hhh------hhHHHhccCCCC
Q 009409          262 IIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK---------SLS------ASLEEMGESLKD  326 (535)
Q Consensus       262 l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------~~~~~~~~~~~~  326 (535)
                      ..+..+||+.|++.++..++..+..++++++++....+...++.....++         ...      ....+.+.....
T Consensus       189 ~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (481)
T TIGR00879       189 LNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQ  268 (481)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhcc
Confidence            66778999999997776666666666666654211100000000000000         000      000000000011


Q ss_pred             CcHHHhhh------cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 009409          327 VPWKAIFR------SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (535)
Q Consensus       327 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~  400 (535)
                      ..++..++      .+.++...+..+...........+.|.+++ .+|++..+.+.......++.+++.++.+++.||++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  347 (481)
T TIGR00879       269 PSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFG  347 (481)
T ss_pred             ccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11233332      233333344444444444556677787775 57999988888889999999999999999999998


Q ss_pred             HcCCCchhHHHHHHHHHHHHHHHHHHHhh---hcCCC------cHHHHHHHHHHHHHHhh-hhhhhhhhhhhccCCcchh
Q 009409          401 ATGVETTMVRKICQTIAFLSPAVCMTLSS---IDLGL------PHWEIVGILTAGLALSS-FALSGLYCTHQDISPEYAS  470 (535)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g  470 (535)
                      +|+         ....+....++++.+..   .....      ....+....+.+.+.+. ..+.......+..|++.|+
T Consensus       348 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  418 (481)
T TIGR00879       348 RRP---------LLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP  418 (481)
T ss_pred             chH---------HHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence            651         22222222222222221   11111      22222222222222222 2233333446667888999


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q 009409          471 ILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQN  530 (535)
Q Consensus       471 ~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (535)
                      ++.|+.+...++|.+++|.+.|.+.+..+ +...|.+.+++.++++++.+...++.|+++
T Consensus       419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~  477 (481)
T TIGR00879       419 KGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETKGRT  477 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHHHHHHHHHHHheecccCCCCC
Confidence            99999999999999999999999999874 777787777766666666665555554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=2.2e-31  Score=266.67  Aligned_cols=353  Identities=18%  Similarity=0.206  Sum_probs=266.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      ++.+..+.+..+....+...+.+.+|.+.+++|.|..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            35555555556677788888999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      .++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++++.+..+||+.|
T Consensus        84 ~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  162 (385)
T TIGR00710        84 SLGLA-LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF  162 (385)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            87764 56778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-cccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhh
Q 009409          273 YIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (535)
                      ++.+++.++..+.... .|++++.+.+   ++.+     +             ....+++.+++|+++...+...+....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPYEAR---IQIS-----T-------------YFETFLLLLKSKMFWGYALIYGASFGG  221 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCccc---CCHH-----H-------------HHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            9988877665444433 4443222111   0000     0             001245678889888887777777777


Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh--h
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS--S  429 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  429 (535)
                      .+....+.|.++++.+|+++.+.+.+.....++.++++++.+++.||+++|       +...  .+.....+...+.  .
T Consensus       222 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~  292 (385)
T TIGR00710       222 FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK-------SLLR--MGLILFAVSAVLLEIT  292 (385)
T ss_pred             HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------HHHH--HHHHHHHHHHHHHHHH
Confidence            788888999999888999999999999999999999999999999999865       2221  1222222111111  1


Q ss_pred             hcCC-CcH-HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc
Q 009409          430 IDLG-LPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS  497 (535)
Q Consensus       430 ~~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  497 (535)
                      .... ... ..+...++.+++.+...+.......+.. |++++++.++.+.....++.+.+.+.|.+.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~  361 (385)
T TIGR00710       293 AILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF-PHVAGTASALFGTLRLVLGAIVGYLVSLIHGN  361 (385)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            1111 122 2233344455555555555544444444 57899999999998887666666677755443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=8.2e-32  Score=278.93  Aligned_cols=391  Identities=16%  Similarity=0.168  Sum_probs=266.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHH
Q 009409          111 QRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (535)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (535)
                      .+++.+..+++.+++..++....++.+|.+.+++|+|..+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            35677778888899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhH
Q 009409          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (535)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (535)
                      ++.++.+ ..++++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..++|.+++.+.+..+||+
T Consensus        97 ~~~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  175 (496)
T PRK03893         97 VGTLACG-FAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA  175 (496)
T ss_pred             HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            8887775 567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhc---------------cCCCCCcHH-----
Q 009409          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG---------------ESLKDVPWK-----  330 (535)
Q Consensus       271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-----  330 (535)
                      .|++.++..++.++....+|++++....+..+.+.....+.......+...               .......+.     
T Consensus       176 ~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (496)
T PRK03893        176 LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLG  255 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence            998755444433333334444322111100000000000000000000000               000000000     


Q ss_pred             ------------H--hhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHH
Q 009409          331 ------------A--IFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFA  396 (535)
Q Consensus       331 ------------~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~  396 (535)
                                  +  ..+.+......+..++.....+....++|.|+++.+|++..+.+.+.+...++.+++.++.|++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~  335 (496)
T PRK03893        256 LLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLG  335 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0  00001111111111111112224567899999878899999999999999999999999999999


Q ss_pred             HHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHH-HHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH
Q 009409          397 DNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI-VGILTAGLALSSFALSGLYCTHQDISPEYASILLGI  475 (535)
Q Consensus       397 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  475 (535)
                      ||+++|        +. ...+..+..+.............+.. ...+..+...............+.+|++++|+++|+
T Consensus       336 dr~g~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  406 (496)
T PRK03893        336 DWLGTR--------KA-YVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF  406 (496)
T ss_pred             HHhcch--------HH-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence            999865        12 22222222222222221122222222 222222222222233344456667888999999999


Q ss_pred             HHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHH
Q 009409          476 TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  512 (535)
Q Consensus       476 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~  512 (535)
                      .+....+|+.+||.+.|.+.|..| +...+...+++.
T Consensus       407 ~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~  442 (496)
T PRK03893        407 TYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL  442 (496)
T ss_pred             hhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence            999999999999999999999985 766665544333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=4.9e-33  Score=274.95  Aligned_cols=347  Identities=26%  Similarity=0.406  Sum_probs=269.7

Q ss_pred             HHHHHHHHhhhhhhHhhhh-hhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHh
Q 009409          120 SLAFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (535)
                      ++..++..++...+.+.+| .+.+++|.|..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.. 
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-
Confidence            4667788888889999999 79999999999999999999999999999999999999999999999999988855554 


Q ss_pred             hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHH
Q 009409          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (535)
Q Consensus       199 ~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  278 (535)
                      ++++.+.+++.|++.|++.+...+...+++.|++|+++|++++++......+|.+++|.+++++.+..+||+.|++.+++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~  160 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL  160 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence            44556799999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCC-cHHHhhhcHHHHHHHHHHHHHhhhhHHHH
Q 009409          279 GIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV-PWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (535)
Q Consensus       279 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (535)
                      .++..++ ..+++++++++..+...+++. .             ++.... .++.+.++|.+|...+..++.........
T Consensus       161 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (352)
T PF07690_consen  161 SLIAAILFILFLPEPPPPRERESPKESES-K-------------KPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS  226 (352)
T ss_dssp             HHHHHHHHHCCC---STTTT--SSTTTT----------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhhhhhccccccccccccccc-c-------------cccccccccccccccchhhhhhhhhhHHHHHHHHhh
Confidence            8777653 234444333332222211100 0             000011 24677777877756666666666778899


Q ss_pred             HhhHHHHHHHhCCC-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 009409          357 SWLPTYFSEELSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP  435 (535)
Q Consensus       357 ~~~p~~l~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (535)
                      .++|.|+.+.+|++ ..+.+.+.....+.++++.++.+++.||++++       +......................++.
T Consensus       227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (352)
T PF07690_consen  227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-------RRLLIAILLLILGALGLLLLPFSSSP  299 (352)
T ss_dssp             HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHHHCHH
T ss_pred             cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            99999988889999 89999999999999999999999999998753       22222222222222222222222344


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHH
Q 009409          436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGV  488 (535)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp  488 (535)
                      .+.++..++.|++.+...+.......+..|++++|++.|+.++..++|+.+||
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55666677788887777778888888889999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=266.30  Aligned_cols=360  Identities=13%  Similarity=0.071  Sum_probs=265.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      .+.+..+.+..++..++.....+.+|.+.+++|.|..++|++.+.+.+++.++++++|+++||+|||+++..+.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777888888899999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      ..+.+ .+++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+||.+++.+.+...|... 
T Consensus        85 ~~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-  162 (381)
T PRK03633         85 CAGLG-LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP-  162 (381)
T ss_pred             HHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH-
Confidence            87764 5778899999999999999988888888888889889999999999999999999999999998775433333 


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhh
Q 009409          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (535)
                      +..++........ .+.+.+++..+ +  +                      +..++++.+++|.++......+......
T Consensus       163 ~~~~~~~~~~~~~-~~~~~~~~~~~-~--~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (381)
T PRK03633        163 WVTGLVLAAILPL-LFTRILNQQAE-N--H----------------------DSTSIWPMLKLRQARLGVNGCIISGIVL  216 (381)
T ss_pred             HHHHHHHHHHHHH-HHhcccCCCCC-C--C----------------------CCCCHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3322222221111 11111111100 0  0                      0112356677877776555455555555


Q ss_pred             HHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 009409          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (535)
Q Consensus       353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (535)
                      .....++|.|+++ .|.+..+.+.+.+...++.++++...+++.||+++|         .....+.....+......   
T Consensus       217 ~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~---------~~l~~~~~~~~~~~~~~~---  283 (381)
T PRK03633        217 GSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL---------LVLRVQVFVVILGSIAML---  283 (381)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH---------HHHHHHHHHHHHHHHHHh---
Confidence            6667889999975 699999999999999999999999999999999764         122222222222222211   


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHH
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  512 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~  512 (535)
                      . ........++.+.+.....+.......+..++++++.+.+..+...++|..+||.++|++.|.+| +...|.+.+.+.
T Consensus       284 ~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~  361 (381)
T PRK03633        284 S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVS  361 (381)
T ss_pred             h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence            1 11222333445554444556666666677788888888888888899999999999999999985 777887766655


Q ss_pred             HHH
Q 009409          513 YLT  515 (535)
Q Consensus       513 ~~~  515 (535)
                      ++.
T Consensus       362 l~~  364 (381)
T PRK03633        362 FIY  364 (381)
T ss_pred             HHH
Confidence            433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.9e-33  Score=276.20  Aligned_cols=385  Identities=16%  Similarity=0.225  Sum_probs=275.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      ..++..++..++..+.+...++.. +..+.+|.+....+.+.+.++++++|++++++++.+.||++..+.+....+++++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            346667778888888998887766 5558899999999999999999999999999999999999999999999898888


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc------cc
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII------EN  265 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~~  265 (535)
                      ..++.+ ..++++.+++.|++.|+..+..+|....+++.||.++||++.+|++++..++|+++|++++..+.      ..
T Consensus       124 ~~~~~~-~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  124 FGFLTA-AVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHH-HHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            887765 47888999999999999999999999999999999999999999999999999999999999863      35


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH
Q 009409          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (535)
Q Consensus       266 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (535)
                      .||||.|++.++++++..++.++..++.+.+..-..++++....++..........++.++..+++.+++|.+|.+.+..
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~  282 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCY  282 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHH
Confidence            68999999999998877655544444444433333333332222222212222222225667788999999999999999


Q ss_pred             HHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI-AFLSPAVC  424 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~-~~~~~~~~  424 (535)
                      ++.....+++.+|+|.|+.+..|++..++..+.++..++++++.+++|.++||...-    . .++..... ..+...+.
T Consensus       283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~----~-~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI----F-ARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh----H-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999875679999999999999999999999999999996300    0 02222222 22222223


Q ss_pred             HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcc-hhHHHHHHHHhhhhhhhHHHH-HHHHHhcccCcch
Q 009409          425 MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY-ASILLGITNTVGAVPGIVGVA-LTGYLLDSTHSWS  502 (535)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~igp~-i~G~l~~~~g~~~  502 (535)
                      ....... ........+.+....+.....+...........++. +-+..+......+.++.++|. ..+.....+ .+.
T Consensus       358 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y-~~~  435 (495)
T KOG2533|consen  358 AISLLAA-AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRY-GWG  435 (495)
T ss_pred             HHHHHhh-ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcch-hhh
Confidence            2222222 223333333333333333334444444555454444 334444444444444444443 334444444 355


Q ss_pred             HHH
Q 009409          503 MSL  505 (535)
Q Consensus       503 ~~~  505 (535)
                      ..|
T Consensus       436 ~~f  438 (495)
T KOG2533|consen  436 AVF  438 (495)
T ss_pred             hHH
Confidence            566

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=3.7e-31  Score=266.09  Aligned_cols=368  Identities=15%  Similarity=0.151  Sum_probs=267.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      ....+.+..+...+....+.+.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++++++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~   96 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA   96 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence            33444555666778888999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHH
Q 009409          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (535)
Q Consensus       195 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  274 (535)
                      +.. .+++++.++++|+++|++.+...+....++.|+++++++++++++......+|..+||++++.+.++.|||+.|++
T Consensus        97 ~~~-~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403         97 ATL-FTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             HHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            764 6788899999999999998877777788899999999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhH
Q 009409          275 FGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (535)
Q Consensus       275 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (535)
                      .+++.++..+. .+.+|+++++++++ .+.      +.    .         ...++.+++||.+|...+..++.....+
T Consensus       176 ~~~~~~i~~~~~~~~lp~~~~~~~~~-~~~------~~----~---------~~~~~~ll~~~~~~~~~l~~~~~~~~~~  235 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPETVKRGAVP-FSA------KS----V---------LRDFRNVFRNRLFLTGAATLSLSYIPMM  235 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccCCC-CCh------HH----H---------HHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            98887665544 34456543221110 000      00    0         0124678899999998888888888888


Q ss_pred             HHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH-Hh-hhc
Q 009409          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT-LS-SID  431 (535)
Q Consensus       354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~  431 (535)
                      .+..+.|.++++.+|+++.+.++.......+..++..+.+++.+|..++       |...........+..+. .. ...
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~~~~~~~~ig~~l~~~~~~~~  308 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEP-------RFIWRAVPIQLVGLALLIVGNLLW  308 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8888999999988999999999988878888888777777765443221       11101111111111111 11 111


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      .+...+.++..++.+.+.+...+....... ......+|++.|+.+.....+..+++...|++.+..  -...|...+++
T Consensus       309 ~~~~~~~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~  385 (413)
T PRK15403        309 PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNG--GRLPFHLLAVV  385 (413)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHH
Confidence            222222344555555555554444443221 122334799999999999999999999999998874  34455444443


Q ss_pred             HH
Q 009409          512 FY  513 (535)
Q Consensus       512 ~~  513 (535)
                      +.
T Consensus       386 ~~  387 (413)
T PRK15403        386 AG  387 (413)
T ss_pred             HH
Confidence            33

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=2.5e-31  Score=266.64  Aligned_cols=366  Identities=16%  Similarity=0.121  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      +.+..+.+..++..+......+.+|. +.+++|.|..+.|++.+++.+++.++++++|+++||+|||++++.+.++..++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            33444555666777778888888886 67899999999999999999999999999999999999999999988776665


Q ss_pred             HHHHHh-------hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc
Q 009409          193 TALLPL-------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (535)
Q Consensus       193 ~~~~~~-------~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (535)
                      .+....       ..++++.+++.|+++|++.+...+...+++.+++|+++|++++++...+..+|.++||++++++.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            432211       1346788999999999999988888889999999999999999999999999999999999999998


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH
Q 009409          266 LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (535)
Q Consensus       266 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (535)
                      .|||+.+++..+..++.+......++.++++    .++ .                      ++++..+  .++...+..
T Consensus       175 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~----------------------~~~~~~~--~~~~~~~~~  225 (392)
T PRK12382        175 FGFAALALTTMVLPLLAWAFNGTVRKVPAHA----GER-P----------------------SLWSVVG--LIWKPGLGL  225 (392)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhccCCCCCc----ccC-c----------------------hHHHHHH--HHHHhHHHH
Confidence            9999887766554433332222222211100    000 0                      0111111  122222223


Q ss_pred             HHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM  425 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (535)
                      ++..........+.|.|+++ .|.+  ..+.......++.++++++.|++.||+++++.       .  ..+.....+..
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~--~~~~~~~~~~~  293 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-------A--IVSLLVETVGL  293 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-------h--HHHHHHHHHHH
Confidence            33344555667888888865 4665  34556666777888999999999999986522       1  12222222222


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      .+... .++.....+..++.+++.+...+.......+..++++||++.|+.++...+|..++|.+.|.+.|..| |...|
T Consensus       294 ~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~  371 (392)
T PRK12382        294 LLLWL-APTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVF  371 (392)
T ss_pred             HHHHH-cccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHH
Confidence            22222 23334444455566666665555555566677899999999999999999999999999999999885 88888


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 009409          506 FAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~~  522 (535)
                      .+.+++.++..++.+..
T Consensus       372 ~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        372 LAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88877666665555443

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=7.1e-31  Score=265.30  Aligned_cols=366  Identities=14%  Similarity=0.161  Sum_probs=271.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      ..+..+.+.++...+......+..|.+++++|+|..+.++..+.+.+++.+++++.|++.||+|||+++..+.++++++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~  105 (438)
T PRK10133         26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            45566677788888899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHH--hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-c-----
Q 009409          194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-N-----  265 (535)
Q Consensus       194 ~~~~--~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~-----  265 (535)
                      +++.  ..+++++.++++|+++|+|.+...+..+.++.++.++++|...+++.+....+|..++|.+++.+.. .     
T Consensus       106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~  185 (438)
T PRK10133        106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS  185 (438)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            7642  3567889999999999999999999999999998777777778999999999999999999876541 0     


Q ss_pred             --------------------cchhHHHHHHHHHHHHHHHHh--hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccC
Q 009409          266 --------------------LGWESVFYIFGLLGIAWFSGF--KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (535)
Q Consensus       266 --------------------~gw~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (535)
                                          .+||++|+....+..+..+..  ..+|+.++++.   .++ +                ..
T Consensus       186 ~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~---~~~-~----------------~~  245 (438)
T PRK10133        186 QDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---SDA-K----------------QG  245 (438)
T ss_pred             hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---ccc-c----------------cc
Confidence                                256666765443332222222  22232111100   000 0                00


Q ss_pred             CCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHH-HHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 009409          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYF-SEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (535)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (535)
                      ......++++++|.++...+..++.....+....|.+.|+ ++.+|+++.++++......++.++++++.+++.||+++|
T Consensus       246 ~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~  325 (438)
T PRK10133        246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_pred             chhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            0011246788999988887777888888888888999885 567899999999999999999999999999999999865


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh
Q 009409          403 GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV  482 (535)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  482 (535)
                              +.. ..+.++.+..+.+..... . .+....+.+.|++.+...+.......+..+ ++.+++.++..+ ..+
T Consensus       326 --------~~l-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~  392 (438)
T PRK10133        326 --------KVL-AAYALIAMALCLISAFAG-G-HVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVM-TII  392 (438)
T ss_pred             --------HHH-HHHHHHHHHHHHHHHHcC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhH-Hhc
Confidence                    222 222222222222222222 2 233456667888888888887777777544 457788888764 557


Q ss_pred             hhhHHHHHHHHHhcccCcchHHHHHHHHHH
Q 009409          483 PGIVGVALTGYLLDSTHSWSMSLFAPSIFF  512 (535)
Q Consensus       483 g~~igp~i~G~l~~~~g~~~~~~~~~~~~~  512 (535)
                      |+.++|.+.|.+.|..|+....|.+..++.
T Consensus       393 g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~  422 (438)
T PRK10133        393 GGGIVTPVMGFVSDAAGNIPTAELIPALCF  422 (438)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            899999999999998754667776544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=4.7e-31  Score=266.37  Aligned_cols=376  Identities=14%  Similarity=0.117  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccc-----hhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-----AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (535)
                      +.+..+.+..++..++...+.+.+|.+.+++|.+..+     .|++.+++.++..++.+++|+++||+|||+++..+.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   93 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence            3344556667777888888999999999999998665     48899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccch
Q 009409          189 WSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (535)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (535)
                      .+++.++.. ..++++.+++.|++.|++.+ ..+....++.+.+++++|++++++......+|.+++|.+++.+.+..+|
T Consensus        94 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  171 (408)
T PRK09874         94 MGIVMVLMG-LAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGL  171 (408)
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            888876664 56778899999999999865 5677788899999999999999999999999999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHHHhh-hcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHH-HHHHH
Q 009409          269 ESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHF  346 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  346 (535)
                      |+.|++.+++.++..+... +.+++++..+++  ++.   .        .+         ...+.+++++++.. ....+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~--------~~---------~~~~~~~~~~~~~~~~~~~~  229 (408)
T PRK09874        172 RPVFFITASVLFLCFLVTLFCIRENFQPVSKK--EML---H--------MR---------EVVTSLKNPKLVLSLFVTTL  229 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccccch--hhh---H--------HH---------HHHHhCcCCchHHHHHHHHH
Confidence            9999999887765544443 344332111100  000   0        00         01234556665443 33333


Q ss_pred             HHhhhhHHHHHhhHHHHHHHhCCChh---hHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 009409          347 CGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (535)
Q Consensus       347 ~~~~~~~~~~~~~p~~l~~~~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  423 (535)
                      +..........++|.|+.+..+....   ..+.+....+++.+++.+..|++.||+++++         ....+.....+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~---------~~~~~~~~~~~  300 (408)
T PRK09874        230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK---------ILITALIFSVL  300 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch---------hHHHHHHHHHH
Confidence            44444455667888888765433221   2455666677888889999999999998652         12222222222


Q ss_pred             HHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      ....... ..+.+...+..++.|++.+...+.......+..+++++|+.+|+.+....+|..+||.++|.+.+..| |..
T Consensus       301 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~  378 (408)
T PRK09874        301 LLIPMSF-VQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRA  378 (408)
T ss_pred             HHHHHHH-hccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhH
Confidence            2222222 22334444555667777776666666666667788999999999999999999999999999999874 888


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc
Q 009409          504 SLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      .|.+.+++.++..++.+...+
T Consensus       379 ~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        379 VFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            998888776666655554443

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=8.4e-31  Score=263.68  Aligned_cols=352  Identities=13%  Similarity=0.130  Sum_probs=264.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+..+.+..++.++....+.+.+|.+.+++|.+..+.+++.+++.+++.++++++|+++||+|||+++..+.++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   85 (401)
T PRK11043          6 GFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS   85 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence            33444444455677788888999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++.. ..++++.+++.|++.|++.+...+...+++.|+++++++++..+.......+|..++|.+++++.+..|||+.|+
T Consensus        86 ~~~~-~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~  164 (401)
T PRK11043         86 LGML-WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA  164 (401)
T ss_pred             HHHH-HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            7764 567788999999999999888888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhH
Q 009409          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (535)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (535)
                      +.+++.++..+..+.++++++++++    ++                    ++..+++.+++|.++...+...+.....+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
T PRK11043        165 TLFAITLLLILPTLRLKPSKKARKQ----SQ--------------------DALTFKQLLKSKTYLGNVLIFAACSAAFF  220 (401)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccc----ch--------------------HHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            9888877666555555543321110    00                    01124677888888776666666666667


Q ss_pred             HHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh-cC
Q 009409          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI-DL  432 (535)
Q Consensus       354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  432 (535)
                      ....+.|.++++ +|+++.+.|+......++.++++++.+++.||+++++.     .+ .......+....+.+... ..
T Consensus       221 ~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~  293 (401)
T PRK11043        221 AWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL-----LP-WLLVLFAVSVIAIWLASLLSH  293 (401)
T ss_pred             HHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-----HH-HHHHHHHHHHHHHHHHHHhcc
Confidence            778889999865 79999999988888888888999999999999876411     11 111111111111111111 12


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      ......+....+.+++.+...+.......+. .|+++|++.|+.++.+..++..++.+.|.+.+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        294 PSLVPLLIPFCVMAAANGAIYPIVVAQALRP-FPQATGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CcccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            2222333344455666665555544444443 3578999999999999999999999999998854

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=8.4e-31  Score=261.45  Aligned_cols=362  Identities=14%  Similarity=0.026  Sum_probs=261.2

Q ss_pred             HHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHH-HHHHHHHHHHHHHh
Q 009409          121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWSLATALLPL  198 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~~  198 (535)
                      +.+++..++.....+.+|. +.+++|.|..+.|++.+++.+...+.+++.|+++||+|||+.++. +.++..++.++. .
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF-A   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH-H
Confidence            4577778888888998887 578899999999999999999999999999999999999887665 444444455454 4


Q ss_pred             hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhH--HHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHH
Q 009409          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRA--VSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (535)
Q Consensus       199 ~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  276 (535)
                      .+++++.+++.|++.|.+.+...|...++..++.++++|++.  .++...+.++|.++||++++++.+..|||+.|++.+
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            677778888999999988888888888888888887777654  688888899999999999999999999999999998


Q ss_pred             HHHHHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHH
Q 009409          277 LLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (535)
Q Consensus       277 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (535)
                      ++.++..+.. +.+|+++++..++. .                       ..+.+..++++.++...+..++........
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGAL-T-----------------------RLEVRGLLASRDTRLLFVACTLMWGCNILY  218 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCccccc-C-----------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence            8776655444 34555332211100 0                       001234556777766655555555555566


Q ss_pred             HHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 009409          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP  435 (535)
Q Consensus       356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (535)
                      ..++|.|+++.+|.++.+.+.+........+++.++.+++.||+++|+         ......+...+....... .++.
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~---------~~~~~~~~~~~~~~~~~~-~~~~  288 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR---------LMLLAALAGVAFYTGLAA-DNSL  288 (375)
T ss_pred             HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHH-HHHH
Confidence            778899998889999999998887777778888999999999998652         122222222222222222 1222


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Q 009409          436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~  515 (535)
                      +......++.+++.+...+.......+ ..|++++++.|+.+...++|..++|.+.|.+.+..| +...|.+.+++.+++
T Consensus       289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~  366 (375)
T TIGR00899       289 WALLMLQLLNAIFIGILAGIGMLYFQD-LMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVA  366 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            333334444555555444444444444 456677899999999999999999999999999874 888888877766555


Q ss_pred             HHhh
Q 009409          516 GTIV  519 (535)
Q Consensus       516 ~~~~  519 (535)
                      .++.
T Consensus       367 ~~~~  370 (375)
T TIGR00899       367 LFCL  370 (375)
T ss_pred             HHHH
Confidence            5444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=3.3e-31  Score=273.24  Aligned_cols=407  Identities=16%  Similarity=0.166  Sum_probs=267.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhccc--------CCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ  183 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~  183 (535)
                      ..+..+...++.+..+++...+++..|.+.+++        |.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            456666777788888899999999888888877        888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh-----------hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHH
Q 009409          184 TGVLIWSLATALLPLL-----------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  252 (535)
                      ++.++++++.++.++.           .+.+..++++|+++|++.+...+...++++|++|+++|++++++...+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9999988887665431           12246788999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHhc--------cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhh-----hhhhHHH
Q 009409          253 VAGLLLAPPII--------ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKS-----LSASLEE  319 (535)
Q Consensus       253 ~~g~~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  319 (535)
                      ++++.+++.+.        +..|||+.|++.++..++..+..+++||+++....+.+.++.....++.     .....++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE  249 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            99988876553        3569999999988887776666667776543211111111100000000     0000000


Q ss_pred             hccCCC--CCcHHHhhhcHHHHH---HHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHH
Q 009409          320 MGESLK--DVPWKAIFRSKAVWA---MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQ  394 (535)
Q Consensus       320 ~~~~~~--~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~  394 (535)
                      ..+..+  ....+..+.-.....   .....+....+.+...++.|.+.+ ..|++....++.....++..+++.++.++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~  328 (479)
T PRK10077        250 IKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-TLGASTDIALLQTIIVGVINLTFTVLAIM  328 (479)
T ss_pred             HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            000000  000000000000000   111112222233445567787775 57888877777777888899999999999


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh-h-cCC-CcHHHHHHHHHHHHHHhh-hhhhhhhhhhhccCCcchh
Q 009409          395 FADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS-I-DLG-LPHWEIVGILTAGLALSS-FALSGLYCTHQDISPEYAS  470 (535)
Q Consensus       395 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g  470 (535)
                      ++||+++|         .....+.+..+++..+.. . ... ...+.....++.+.+.+. ..+.......+.+|+++|+
T Consensus       329 l~dr~g~r---------~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  399 (479)
T PRK10077        329 TVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG  399 (479)
T ss_pred             HHHHhcCh---------HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence            99999864         222333333333332221 1 111 122233333334433332 2234455666778889999


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHh------cccCcchHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 009409          471 ILLGITNTVGAVPGIVGVALTGYLL------DSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQ  529 (535)
Q Consensus       471 ~~~g~~~~~~~lg~~igp~i~G~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (535)
                      ++.|+.+..+.+|.++++.+.+.+.      +..+ +...|++.++..+++.++.+...+++|++
T Consensus       400 ~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            9999999999999999977776544      4554 55666666665566656555555555544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=4.6e-30  Score=257.65  Aligned_cols=352  Identities=16%  Similarity=0.144  Sum_probs=266.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      ++.+..+.+..+...+....+.+.+|.+.+++|.|..+.+++.+++.+++.++++++|+++||+|||+++.++.++..++
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            45555666666677788888889999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      .++.. ..++++.+++.|++.|++.+...+....+..|.++++++++++++...+..++..++|.+++.+.+..|||+.|
T Consensus        87 ~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f  165 (394)
T PRK11652         87 TLVAL-FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACY  165 (394)
T ss_pred             HHHHH-HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            87764 56778999999999999998888888888999999899999999999999999999999999999989999999


Q ss_pred             HHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhh
Q 009409          273 YIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (535)
Q Consensus       273 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (535)
                      ++.+++.++..+ ..++.+|+++.+++    +.+                   ....++..+++|.++...+..+.....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (394)
T PRK11652        166 LFLLLLGAGVTFSMARWMPETRPADAR----RTR-------------------VLASYRTLLSNRRFNCYLLMLIGTLAG  222 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCCccCccccc----hhH-------------------HHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            998877655433 33444543321110    000                   011245677888888766666666666


Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh-
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI-  430 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  430 (535)
                      ...+..+.|.++++.+|++..+.+++.....++.+++..+.+++.||.++.        ............+....... 
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  294 (394)
T PRK11652        223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWF  294 (394)
T ss_pred             HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence            666677888899888999999999988888888888889999999988632        12211222222222222111 


Q ss_pred             cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc
Q 009409          431 DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS  497 (535)
Q Consensus       431 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  497 (535)
                      ...+........++.+++.+...+.......+.. |+++|++.++.+....+|+.+++.++|.+.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        295 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPF-PYLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            1122333444455566666665666665555544 57889999999999999999999999988765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=9.2e-31  Score=261.58  Aligned_cols=377  Identities=13%  Similarity=0.043  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (535)
                      .+.+..++..++...+....+.+.+++|.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++++++.+++.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            45666777777666677777777899999999999999999999999999999999999999999999999888876653


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                       +..+   .++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.++|++.+. .|+..+++.+.
T Consensus        87 -~~~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~  161 (393)
T PRK11195         87 -FGIH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCAL  161 (393)
T ss_pred             -HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence             3444   278899999999999999999999999999999999999999999999999999999875 48888877766


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHH
Q 009409          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (535)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (535)
                      ..++..+....+|++++++++...+....   .+       +.     ...++.++++|.+....+..++..........
T Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~-------~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  226 (393)
T PRK11195        162 IYLLAALFNLFIPRLGARRPGQSWNPIAL---LR-------DF-----FHACRVLWRDKLGRFSLAGTTLFWGAGATLRF  226 (393)
T ss_pred             HHHHHHHHHhcCCCCcccccccCCCHHHH---HH-------HH-----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            55544455555665432211111110000   00       00     00135677888776665555555555566677


Q ss_pred             hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHH
Q 009409          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW  437 (535)
Q Consensus       358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (535)
                      .+|.|+++.+|.++.+.|++.....++.+++.++.+++.||.+.+       +  ....+.+. +........ .++.++
T Consensus       227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~-------~--~~~~g~~~-~~~~~~~~~-~~~~~~  295 (393)
T PRK11195        227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL-------R--VLPAGILM-GLVVLLMAL-QHSLLP  295 (393)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-------c--hHHHHHHH-HHHHHHHHH-HhHHHH
Confidence            788899888999999999999999999999999999998876543       1  11222222 222222222 222333


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcc-hhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Q 009409          438 EIVGILTAGLALSSFALSGLYCTHQDISPEY-ASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTG  516 (535)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~  516 (535)
                      ..+..++.|++.+...++.....++..+++. +|++.|+.++.++++..++..+.+.+ +..| ....+.+.++..++..
T Consensus       296 ~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        296 AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVAL  373 (393)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHHH
Confidence            3445556677766666555555555433443 69999999999999999999999966 4554 6666666555555555


Q ss_pred             HhhhhhccCCC
Q 009409          517 TIVWLAFASSK  527 (535)
Q Consensus       517 ~~~~~~~~~~~  527 (535)
                      .+.+.++.+++
T Consensus       374 ~~~~~~~~~~~  384 (393)
T PRK11195        374 AMALLWRWHRR  384 (393)
T ss_pred             HHHHHHHHHHh
Confidence            54444443333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=9.6e-31  Score=262.08  Aligned_cols=364  Identities=15%  Similarity=0.111  Sum_probs=262.1

Q ss_pred             HHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHh
Q 009409          120 SLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (535)
                      ....++...+.....+.++. +.+++|.|..+.|++.+...++..+.++++|+++||+|||+++..+.++.+++.++.. 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~-   94 (400)
T PRK11646         16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA-   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-
Confidence            34555566666666777665 6789999999999999999999999999999999999999999999999988887764 


Q ss_pred             hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHH
Q 009409          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (535)
Q Consensus       199 ~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  278 (535)
                      ..++++.+++.|++.|++.+...+...+++.+++|+++|++++++......+|..+||.+++++. ..|||+.|++.++.
T Consensus        95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~  173 (400)
T PRK11646         95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL  173 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            56778889999999999998888999999999999999999999999999999999999999998 67999999998877


Q ss_pred             HHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHH
Q 009409          279 GIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (535)
Q Consensus       279 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (535)
                      .++..+. .+..|+.+++ +    .+++                   ....+++++++|.++...+..+...........
T Consensus       174 ~~~~~i~~~~~~~~~~~~-~----~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKLS-T----VRTP-------------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVML  229 (400)
T ss_pred             HHHHHHHHHHhCCccccc-c----cchh-------------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            6654433 3333332110 0    0000                   011246778888887666555554444445567


Q ss_pred             hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcH
Q 009409          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH  436 (535)
Q Consensus       358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (535)
                      ++|.|+++. +.++.+.+.+.+...++..++....+++.|| ++.+        +. ...+....++...+.... ++..
T Consensus       230 ~~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~--------~~-~~~~~~~~~~~~~~l~~~-~~~~  298 (400)
T PRK11646        230 MLPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLE--------HR-LMAGLLIMSLSMFPIGMV-SNLQ  298 (400)
T ss_pred             hhhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--------HH-HHHHHHHHHHHHHHHHHh-hhHH
Confidence            899999875 4477888888887777777666666666665 3221        11 222333333333333222 2233


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCc---chHHHHHHHHHHH
Q 009409          437 WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS---WSMSLFAPSIFFY  513 (535)
Q Consensus       437 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~---~~~~~~~~~~~~~  513 (535)
                      +..+..++.+.+.+...+.......+..|++++|++.|+.+...++|..+||.++|.+.|..++   ....+...+++.+
T Consensus       299 ~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~  378 (400)
T PRK11646        299 QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGL  378 (400)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            3334444555555555566667777778999999999999999999999999999999998642   3445555444444


Q ss_pred             HHHHhhh
Q 009409          514 LTGTIVW  520 (535)
Q Consensus       514 ~~~~~~~  520 (535)
                      +..+...
T Consensus       379 ~~~~~~~  385 (400)
T PRK11646        379 ITLLALY  385 (400)
T ss_pred             HHHHHHH
Confidence            4444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=2.2e-30  Score=258.46  Aligned_cols=361  Identities=10%  Similarity=-0.039  Sum_probs=273.8

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHH-HHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLATALLP  197 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~-~~~~~~~~~  197 (535)
                      +.+.++..++....+.|++|.+.+++|+|..++|++.+++.+...++++++|+++||+||+........+ ..+..+...
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            5566777778888999999999999999999999999999999999999999999999985433222211 112222232


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                      ..+++++.+++.|+++|.+.+...|...++..++  +++|++.+|......++|.+++|++++.+.+++|||+.|++.++
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~  166 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA  166 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            3567788999999999999988889988887654  47889999999999999999999999999999999999998766


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHH
Q 009409          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (535)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (535)
                      ..++.++ ...++++.+++++.. +++                  ......+++++|+|++|.+.+..++...+......
T Consensus       167 ~~~~~~~-~~~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~  226 (382)
T TIGR00902       167 GLAFMLI-GFLIKPTIPPKDAIP-EDE------------------SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG  226 (382)
T ss_pred             HHHHHHH-HHHcCCCCCCCcccc-ccc------------------cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            5333333 233333211111100 000                  00112356888999999999988998888889999


Q ss_pred             hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHH
Q 009409          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW  437 (535)
Q Consensus       358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (535)
                      +.|.|+++ +|.+..+.|.+.....++.+++..+.+++.||++.+         ....++.+...+...+... .++.+.
T Consensus       227 ~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~-~~~~~~  295 (382)
T TIGR00902       227 FSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGA-IEAFPL  295 (382)
T ss_pred             HHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHh-HhhHHH
Confidence            99999976 799999999999999999999999999999999754         3334455555544444433 344455


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH-hhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Q 009409          438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNT-VGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~  515 (535)
                      .+...++.++..+...+....++.+. |+++++++.++++. ...+|.+++|.++|+++|+.| + ..|...+++.+++
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~  371 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHH
Confidence            66677888888888888888888876 88899999999874 567999999999999999985 4 5566656544433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=5.7e-30  Score=262.36  Aligned_cols=376  Identities=13%  Similarity=0.117  Sum_probs=268.2

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc-----CCchh-hHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKV-LQTGVLIWSL  191 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~-~~~~~~~~~~  191 (535)
                      .+++.++.+++.....+..+|.+.++.|.+..++|.. +.....+ ++.+++|+++||+     |||+. +..+.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            3455556777888888889999999999999999986 4444444 6889999999999     99885 6577666666


Q ss_pred             HHHHHHhhh--hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-ccch
Q 009409          192 ATALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGW  268 (535)
Q Consensus       192 ~~~~~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw  268 (535)
                      +...+++..  ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            665554432  4567888899999999999999999999999999999999999999999999999999999998 5799


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHH
Q 009409          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (535)
                      |..|++.+++.++..+..++.+|+++..+.   ++ ..   ++            ....++++.++++..|...+..++.
T Consensus       174 r~~f~i~a~l~ll~~l~~~~~~e~~~~~~~---~~-~~---~~------------~~~~~l~~~~~~~~~~~~ll~~~l~  234 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLLAPEPTDTIPV---PK-TL---EQ------------AVVAPLRDFFGRNNAWLILLLIVLY  234 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccc---cc-ch---hh------------hHHHHHHHHHcCcCHHHHHHHHHHH
Confidence            999999998877666655555554321100   00 00   00            0011356677777777776666666


Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH--HHH
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVS-ILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA--VCM  425 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~-~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~  425 (535)
                      ....+....+.+.|+.+.+|++..+.+.+. ....++.+++.++.|+++||++++        +.....+.+...  ..+
T Consensus       235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~--------~~l~i~~~l~~l~~l~~  306 (491)
T PRK11010        235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF--------RALMIFGILQGVSNAGY  306 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHH
Confidence            666667778888898777899999999887 455678999999999999999864        222222221111  111


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      .......++........++..+..+...........+..+++..++..|+.+...++|..+++.+.|++.|..| |...|
T Consensus       307 ~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f  385 (491)
T PRK11010        307 WLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFY  385 (491)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHH
Confidence            11122112222222223332222232233334455566788889999999999999999999999999999885 88888


Q ss_pred             HHHHHHHHHHHHhhhhhc
Q 009409          506 FAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~  523 (535)
                      .+.+++.+.+.++.+..+
T Consensus       386 ~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        386 LFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            887776666655555443

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.4e-30  Score=262.03  Aligned_cols=371  Identities=24%  Similarity=0.291  Sum_probs=270.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+....+.++...++....++..|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            45566666677777778888888999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      +.++.. ..++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++++.+..||++.
T Consensus        95 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  173 (398)
T TIGR00895        95 FTLLCA-LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL  173 (398)
T ss_pred             HHHHHH-HccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence            887764 5677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HHHhhhcccCCCCCCCCCCcchhhhhhh--hhhhhh----HHHhcc--CCCCCcHHHhhhc---HHHH
Q 009409          272 FYIFGLLGIAW-FSGFKILQEGETSNGATLAPRSNYINMK--KSLSAS----LEEMGE--SLKDVPWKAIFRS---KAVW  339 (535)
Q Consensus       272 f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~--~~~~~~~~~~~~~---~~~~  339 (535)
                      |++.+++.++. .+...+++++++....+..++......+  .....+    ..+.++  ...+..++.++++   +..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T TIGR00895       174 FYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITV  253 (398)
T ss_pred             hhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHH
Confidence            99987555443 3444455554322111110000000000  000000    000000  0001112223322   3344


Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      .+.+..++.....+....++|.+. +.+|++..+.+.+.....++.+++.++.+++.||++++         ........
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~  323 (398)
T TIGR00895       254 LLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALLLLL  323 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHHHHH
Confidence            445555566667777788899555 56799999999999999999999999999999999753         11122222


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHH
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYL  494 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  494 (535)
                      .......+.. ...+.....+..++.+++.+...+.......+.+|+++|+++.|+.+.+..+|..+||.++|++
T Consensus       324 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       324 GAVFAVLVGS-TLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            2222222222 1233444555566677777777777777788888999999999999999999999999999976

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=1.2e-30  Score=260.96  Aligned_cols=380  Identities=10%  Similarity=0.045  Sum_probs=270.8

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      +..+.+..++...+.....+.+|. +.+++|+|..+.|++.+++.+++.+++++.|+++||+|||++++++.++.+++.+
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            334555666677787888887766 5678999999999999999999999999999999999999999999988888777


Q ss_pred             HHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHH
Q 009409          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (535)
Q Consensus       195 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  274 (535)
                      +.. +.++++.++++|++.|.+.+...+...++..|.+++++|++++++.....++|.++||++++++.+ .+|+..|++
T Consensus        89 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~  166 (395)
T PRK10054         89 AIP-LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWL  166 (395)
T ss_pred             HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHH
Confidence            664 567778888889888888777788889999999999999999999999999999999999999875 699999999


Q ss_pred             HHHHHHHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhH
Q 009409          275 FGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (535)
Q Consensus       275 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (535)
                      .+++.++..+.. +.+++++++++++   ++      +              ....++.+++|.++...+..++......
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~~~~~~---~~------~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~  223 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEKAIATE---TG------S--------------VWSPSVLLQDKALLWFTCSGFLASFVSG  223 (395)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccc---hh------h--------------hhhhhhhccCceehHHHHHHHHHHHHHH
Confidence            887776654333 3344443221100   00      0              0012467788998888877777777766


Q ss_pred             HHHHhhHHHHHHH--hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       354 ~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      ....+.+.|+...  .+.+....+.+.....+.........+++.||.++|         .....+.....+.+......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~  294 (395)
T PRK10054        224 AFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFS  294 (395)
T ss_pred             HhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHc
Confidence            6666777777543  345566667777777777777777888899987654         22223333333333222222


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      .++.+...+...+.+++.....+.....+.+..|++.++++.|..+ ...+|..+||.++|.++|+.| +...|.+.+++
T Consensus       295 ~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~  372 (395)
T PRK10054        295 GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALA  372 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHH
Confidence            2222223344555666655555555556667788899999998765 567899999999999999985 66666554443


Q ss_pred             HHHHHHhhhhhccCCCCCCCCCC
Q 009409          512 FYLTGTIVWLAFASSKPQNFSTR  534 (535)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~  534 (535)
                      ..   +..++..++.+.++|.++
T Consensus       373 ~~---~~~~~~~~~~~~~~~~~~  392 (395)
T PRK10054        373 IV---AAWLLMLKGMRARPWGQP  392 (395)
T ss_pred             HH---HHHHHHHhccccCcccCC
Confidence            32   222333355566677664

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.1e-29  Score=254.78  Aligned_cols=348  Identities=15%  Similarity=0.123  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      |.+....+..++...+...+.+++|.+.+++|.|..+.++..+.+.++..+++++.|+++||+|||++++.+.++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS   82 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence            44445556666777777888899999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      .+.. .+++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|+
T Consensus        83 ~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~  161 (392)
T PRK10473         83 LLCS-LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY  161 (392)
T ss_pred             HHHH-HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence            7764 567778889999999999999899999999999999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhh
Q 009409          274 IFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH  352 (535)
Q Consensus       274 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  352 (535)
                      +.+++.++..+. ...++|+++++.+   ++..   .                ....++.++++.++...+...+.....
T Consensus       162 ~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (392)
T PRK10473        162 TMAAMGILVLLLSLFILKETRPARAP---AASS---K----------------PRENSESLLNRFFLSRLVITTLSVTVI  219 (392)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcccC---Cccc---h----------------HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            988877655443 3444544322110   0000   0                001245677887776655555555555


Q ss_pred             HHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 009409          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (535)
Q Consensus       353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (535)
                      ..+..+.|.++++.+|+++.+.+.+.+...++.+++.++.+++.||+++|       +  ....+.....+.........
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~-------~--~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR-------T--LMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------H--HHHHHHHHHHHHHHHHHHHH
Confidence            56677788888888899999999999999999999999999999999865       2  22222222222222222211


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      . .........+.+.+.+......  ......+.++++   |..+....++..+++.++|.+.+..|
T Consensus       291 ~-~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        291 S-HAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             H-HHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1 1222222223233322222211  112222333332   33344455677777888888887765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=8e-30  Score=255.36  Aligned_cols=366  Identities=15%  Similarity=0.151  Sum_probs=274.9

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (535)
                      +.++++.++..++..+..++.+|.+++++|+|..+.|++.+.+.+++.++.++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            45666777788888888899999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHhh--hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc--------
Q 009409          196 LPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------  265 (535)
Q Consensus       196 ~~~~--~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------  265 (535)
                      ....  .++++.+++.|++.|+|.+...+....++.+..|+++|++.+++.+...++|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            5322  356789999999999999999999999999999999999999999999999999999999877422        


Q ss_pred             ------------------cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCC
Q 009409          266 ------------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDV  327 (535)
Q Consensus       266 ------------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (535)
                                        .+||++|++.+++.++..+...+.+.++.++.+  .+++                   ....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~--~~~~-------------------~~~~  223 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD--AKQI-------------------SFSA  223 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--cccc-------------------cchh
Confidence                              369999999988776654444333322211100  0000                   0011


Q ss_pred             cHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 009409          328 PWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (535)
Q Consensus       328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (535)
                      ..++++|+|+++...+..+++.....+..++++.|.++.. +.+...++...+....+..+|+++.+++.||+++|    
T Consensus       224 ~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~----  299 (410)
T TIGR00885       224 SLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH----  299 (410)
T ss_pred             hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----
Confidence            2357788999998888888888888888899999996532 44445555566667778899999999999999764    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhH
Q 009409          407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV  486 (535)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i  486 (535)
                          +. ..+..+...++.++.....  .......+.+.+++.+..++.......+..+++....+.++...+  +|+.+
T Consensus       300 ----~~-l~i~~~~~~~~~ll~~~~~--~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~  370 (410)
T TIGR00885       300 ----KV-LMAYAIIGMALCLGSIFAG--GHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGI  370 (410)
T ss_pred             ----HH-HHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccch
Confidence                22 2233333333333333322  233455566677787777887777777777766655555555544  99999


Q ss_pred             HHHHHHHHhccc-----CcchHHHHHHHHHHHHH
Q 009409          487 GVALTGYLLDST-----HSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       487 gp~i~G~l~~~~-----g~~~~~~~~~~~~~~~~  515 (535)
                      +|++.|.+.|..     |++...|++...+.+..
T Consensus       371 ~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       371 VPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             HHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            999999999954     45777887766555443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=8.9e-30  Score=251.40  Aligned_cols=346  Identities=30%  Similarity=0.450  Sum_probs=291.6

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (535)
                      .+.+..+...++.....+..|.+.+++|.+..+.+++.+...++..++++++|+++||+|||+.+..+.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            44566777888888999999999999999999999999999999999999999999999999999999999988887775


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                       ..++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..++|.+++.+.+..+||+.|++.++
T Consensus        83 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          83 -FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             -HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             5577899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHH
Q 009409          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (535)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (535)
                      +.++..+...+++                                             |.++...+..++..........
T Consensus       162 ~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~  196 (352)
T cd06174         162 LGLLLALLLLFLL---------------------------------------------RLLLLLALAFFLLSFGYYGLLT  196 (352)
T ss_pred             HHHHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhHHHHHHH
Confidence            8776655554433                                             4566677777888888889999


Q ss_pred             hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHH
Q 009409          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW  437 (535)
Q Consensus       358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (535)
                      +.|.+.++.+|.+..+.+.......++..++.++.+++.||+++|       ++ ....+.....+....... .++...
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~i~~~~~~~-~~~~~~  267 (352)
T cd06174         197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-------RL-LLLIGLLLAALGLLLLAL-APSLAL  267 (352)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hH-HHHHHHHHHHHHHHHHHH-hccHHH
Confidence            999999887799999999999999999999999999999999865       10 233334333333333333 223445


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Q 009409          438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGT  517 (535)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~  517 (535)
                      ..+..++.+++.+...+.......+..|+++|++..|+.+...++|..++|.+.|.+.+.. ++...+.+.+++.++..+
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i  346 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAAL  346 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHH
Confidence            5566677788877777777888888888899999999999999999999999999999876 588888887776666555


Q ss_pred             hh
Q 009409          518 IV  519 (535)
Q Consensus       518 ~~  519 (535)
                      +.
T Consensus       347 ~~  348 (352)
T cd06174         347 LL  348 (352)
T ss_pred             Hh
Confidence            44

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=9.9e-30  Score=253.90  Aligned_cols=334  Identities=20%  Similarity=0.276  Sum_probs=245.9

Q ss_pred             hhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 009409          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (535)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (535)
                      ++...+.+.+|.+.+++|+|..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++..+.. ..++++.++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   83 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQLI   83 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHHH
Confidence            4556778999999999999999999999999999999999999999999999999999999888887775 567778999


Q ss_pred             HHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHH-h
Q 009409          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG-F  286 (535)
Q Consensus       208 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~-~  286 (535)
                      +.|++.|++.+...+...+++.|++++++|++++++......+|..++|.+++.+.+..+||+.|++.+++.++..+. .
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999899999999988877665443 3


Q ss_pred             hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH
Q 009409          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (535)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~  366 (535)
                      +.+++++++++++. .+.     ++             ...++++.+++|.++...+..++...+.+....+.|.++.+.
T Consensus       164 ~~~~~~~~~~~~~~-~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (377)
T PRK11102        164 FFIPETLPKERRQP-FHL-----RT-------------TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL  224 (377)
T ss_pred             HhCCccCcccccCC-CCh-----HH-------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            44454332211100 000     00             001245678888888877777777777777888889888888


Q ss_pred             hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH---HHHHHHHhhhcCCCcHH-HHHHH
Q 009409          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS---PAVCMTLSSIDLGLPHW-EIVGI  442 (535)
Q Consensus       367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~  442 (535)
                      +|+++.+.+.+.....++.+++.++.+++.||+++|       + . ...+...   ..+.+..... .+...+ ..+..
T Consensus       225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  294 (377)
T PRK11102        225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL-------N-M-LRFGLWIQFIMGIWLVVSAL-LDLGFWALVVGV  294 (377)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-------H-H-HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Confidence            899999999999999999999999999999999865       1 1 1222211   1111111111 111222 22222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhh-hhhhhHHHHHHH
Q 009409          443 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIVGVALTG  492 (535)
Q Consensus       443 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~igp~i~G  492 (535)
                      ...+.+.+...........+ ..|+.++++.++.+... .+|..+++.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        295 AAFVGCVSMISSNAMAVILD-EFPHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHhhHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22333333333333333333 45688999999987765 456666665544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.3e-30  Score=266.30  Aligned_cols=409  Identities=17%  Similarity=0.157  Sum_probs=268.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhccc-----CCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF-----GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGV  186 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~  186 (535)
                      +++.+.++.+..+..+++...++...|.+.+++     +.+..+.+++.+.+.+++.++.+++|+++||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            446667778888899999999999888876642     345667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh------hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHH
Q 009409          187 LIWSLATALLPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~~------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (535)
                      +++.++.++.+ .+.+      ++.++++|++.|++.+...+....+++|++|+++|++++++......+|.++++.++.
T Consensus        94 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASG-LSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHH-HccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888887765 3333      5789999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhcc-----------------------ccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCc-chhh--hhhh-h-h
Q 009409          261 PIIE-----------------------NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNY--INMK-K-S  312 (535)
Q Consensus       261 ~l~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~-~  312 (535)
                      .+..                       ..+||+.|.+.++..++.++..+++||+++....+.++ ++..  ..+. + .
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~  252 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK  252 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccc
Confidence            6532                       23799999888887777777778888887642111111 1111  0000 0 0


Q ss_pred             hhhhHHH---h--ccCCCCCcHHHhhhc---HHHHH----HHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHH----
Q 009409          313 LSASLEE---M--GESLKDVPWKAIFRS---KAVWA----MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW----  376 (535)
Q Consensus       313 ~~~~~~~---~--~~~~~~~~~~~~~~~---~~~~~----~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~----  376 (535)
                      ..++.++   .  +++..+.++++++++   ++.+.    ..+..++....+|+...+.|.+++ ..|++....+.    
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~  331 (502)
T TIGR00887       253 IEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYE  331 (502)
T ss_pred             cccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHH
Confidence            0000000   0  001111346666653   22211    222334445566777788999996 46886543221    


Q ss_pred             --------HHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC---CCcHHHHHHHHHH
Q 009409          377 --------VSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL---GLPHWEIVGILTA  445 (535)
Q Consensus       377 --------~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  445 (535)
                              ......++.+++.++.++++||+|+|         .....+..+.++++.+.....   ..........+..
T Consensus       332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR---------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  402 (502)
T TIGR00887       332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK---------PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ  402 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch---------hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                    22334456677889999999999875         222223322222222221111   1111111111111


Q ss_pred             HHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC---------cchHHHHHHHHHHHHHH
Q 009409          446 GLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH---------SWSMSLFAPSIFFYLTG  516 (535)
Q Consensus       446 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g---------~~~~~~~~~~~~~~~~~  516 (535)
                      .++.....+....+..+.+|++.|+++.|+.+.++.+|++++|.+.|++.+..+         ++...|++.+++.+++.
T Consensus       403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  482 (502)
T TIGR00887       403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI  482 (502)
T ss_pred             HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence            111111222333345667888999999999999999999999999999998531         23445666666555554


Q ss_pred             HhhhhhccCCCCCCCC
Q 009409          517 TIVWLAFASSKPQNFS  532 (535)
Q Consensus       517 ~~~~~~~~~~~~~~~~  532 (535)
                      +.. ++.+++|.++.+
T Consensus       483 i~~-~~lpEt~~~~le  497 (502)
T TIGR00887       483 LFT-LLIPETKGKSLE  497 (502)
T ss_pred             HHh-eEeccCCCCCHH
Confidence            443 444666655544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=99.98  E-value=7.2e-30  Score=264.82  Aligned_cols=377  Identities=17%  Similarity=0.122  Sum_probs=259.2

Q ss_pred             hhhhhhhcccCCC---ccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009409          135 VAIIPMSHRFGWN---SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (535)
Q Consensus       135 ~~~~~~~~~~g~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (535)
                      +..|.+.+|+|++   ..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.++.+ ++++++.+++.|+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~  188 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRL  188 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence            5678899999999   89999999999999999999999999999999999999999888887764 6788899999999


Q ss_pred             HhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhccc
Q 009409          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (535)
Q Consensus       212 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  291 (535)
                      +.|++.+...+...+++.|++|+++|+++.++...+..+|.+++|.+++.+.+   ||+.|++.++..++..+..+++||
T Consensus       189 l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999877653   999999999888777766677777


Q ss_pred             CCCCCCCCCCcchhhhhhhhh------------hhhh-HHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHh
Q 009409          292 GETSNGATLAPRSNYINMKKS------------LSAS-LEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSW  358 (535)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  358 (535)
                      +++....+.+.++.....++.            .... .++.++..++..+++++++|.++...+..++..+......+.
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG  345 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            654221111111100000000            0000 000011112346788999998887766555444433333333


Q ss_pred             hHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc-HH
Q 009409          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP-HW  437 (535)
Q Consensus       359 ~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  437 (535)
                      ++.++ +.++.+...   .....++..+++.++.+++.||+|+|         .......++.++++++........ .+
T Consensus       346 ~~~~~-~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~~~  412 (505)
T TIGR00898       346 LVLDL-GNLGGNIYL---DLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLYFL  412 (505)
T ss_pred             Hhccc-cccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCchHH
Confidence            33333 334555433   33455677888999999999999854         233333444444433333323222 33


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Q 009409          438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGT  517 (535)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~  517 (535)
                      .....++.+++..........+..+.+|++.|+++.|+.+++..+|++++|.+.+ +.+ .+ +...+.+.+++.+++++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHH
Confidence            3333334444444444555556677788999999999999999999999999999 544 32 44555555555555544


Q ss_pred             hhhhhccCCCCCCCC
Q 009409          518 IVWLAFASSKPQNFS  532 (535)
Q Consensus       518 ~~~~~~~~~~~~~~~  532 (535)
                      +.+ ..+++++++.+
T Consensus       490 ~~~-~lpet~~~~l~  503 (505)
T TIGR00898       490 LTL-FLPETKGVPLP  503 (505)
T ss_pred             HHH-cCcCCCCCCCC
Confidence            444 33455554443

>TIGR00896 CynX cyanate transporter

Probab=99.98  E-value=3.8e-30  Score=254.51  Aligned_cols=338  Identities=17%  Similarity=0.203  Sum_probs=253.4

Q ss_pred             hhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 009409          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (535)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (535)
                      .....+++.+|.+.+++|+|.++.+++.+++.+++.++.++.|+++||+|||+++.++.++.+++.++.  ..++++.++
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l~   91 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALLF   91 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHHH
Confidence            334567889999999999999999999999999999999999999999999999999988877776554  456678889


Q ss_pred             HHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc--chhHHHHHHHHHHHHHHHH
Q 009409          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GWESVFYIFGLLGIAWFSG  285 (535)
Q Consensus       208 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~  285 (535)
                      +.|++.|++.+...+....++.++++ ++|++++++.+.+..+|..+++.+++.+.+..  +||+.|.+.++..++... 
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~-  169 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL-  169 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-
Confidence            99999999998887788888889886 68999999999999999999999999888764  399999887765443322 


Q ss_pred             hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHH
Q 009409          286 FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE  365 (535)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~  365 (535)
                       ..+++.+++++++..                      ......++.+|+|.++...+..++....++....++|.|+++
T Consensus       170 -~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~  226 (355)
T TIGR00896       170 -AWIPQVRRRVAANQT----------------------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS  226 (355)
T ss_pred             -HHhhhhccccCCCCC----------------------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             223332211110000                      001123567788988887777777777888889999999976


Q ss_pred             HhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 009409          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA  445 (535)
Q Consensus       366 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (535)
                       +|++..+.+.+.+...++.++++++.|++.||++.+       + .......+..+++............+  ...++.
T Consensus       227 -~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  295 (355)
T TIGR00896       227 -HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ-------R-GIVAVLAVLQLVGLCGLLFAPMHGLW--AWALVL  295 (355)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-------h-HHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHH
Confidence             699999999999999999999999999999999654       2 22222223333232222222222222  234456


Q ss_pred             HHHHhhhhhhhhhhhhhcc-CCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          446 GLALSSFALSGLYCTHQDI-SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       446 g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      |++.+...+.......+.. ++++++...|+.+..++++..++|.+.|++.|+.|+|..
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            6666655555444444433 456789999999999999999999999999999987753

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=1.2e-28  Score=246.03  Aligned_cols=353  Identities=12%  Similarity=0.036  Sum_probs=257.6

Q ss_pred             HHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCc----hhhHHHHHHHHHHHHHHH
Q 009409          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR----KVLQTGVLIWSLATALLP  197 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~  197 (535)
                      .++..+.+...+.+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.   .....
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~---~~~~~   88 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF---AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH---HHHHH
Confidence            3555567778899999999999999999999999999999999999999999999994    3333222221   22223


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                      ..+++++.+++.|++.|++.+...|...+++.++  +++|+++++......++|.++||++++++.+++|||..|++.++
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            3457788889999999999888889888887776  35688899999999999999999999999999999999998876


Q ss_pred             HHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHH
Q 009409          278 LGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLS  357 (535)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  357 (535)
                      ..++..+.....++++++.++   ++.                 .+.....+++++|+|.+|...+..++..........
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~---~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~  226 (382)
T PRK11128        167 GVASMLLGQLLRPTIMPQGES---RQQ-----------------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYG  226 (382)
T ss_pred             HHHHHHHHHHccCCCCCcccc---ccc-----------------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHH
Confidence            554444333333332111100   000                 000122467899999999988888887777777888


Q ss_pred             hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHH
Q 009409          358 WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHW  437 (535)
Q Consensus       358 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (535)
                      +.|.|+++ .|++..+.|.+.....++.++...+.+++.||++++         .....+.+..++...+... .++.+.
T Consensus       227 ~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~-~~~~~~  295 (382)
T PRK11128        227 FSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGS-TTALPW  295 (382)
T ss_pred             HHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence            89999965 799999999999988888889999999999998754         2233344444443333332 334455


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH-HhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHH
Q 009409          438 EIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN-TVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  513 (535)
Q Consensus       438 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~  513 (535)
                      .++..++.|+..+...+....+..+ .+++++++..++.+ ....+|..+||.++|.+.|..| + ..++..+++.+
T Consensus       296 ~~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~  369 (382)
T PRK11128        296 LIVIQILHCGTFTVCHLAAMRYIAA-RPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVAL  369 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHH
Confidence            5566677777767666666655555 46777789999887 4456777999999999999986 3 34555444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=3.7e-29  Score=251.13  Aligned_cols=358  Identities=18%  Similarity=0.163  Sum_probs=255.6

Q ss_pred             HHHHhhhhhhHhhhhhhhcccC--CCccchhHHHHH-----HHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          124 VICNMDKVNLSVAIIPMSHRFG--WNSSVAGLVQSS-----FFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      +..++++..++...+.+.++..  .+..+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3456788888888787777654  445555555443     233334688999999999999999999999998888777


Q ss_pred             Hhhhhhhh--------HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc-----
Q 009409          197 PLLAGFMP--------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-----  263 (535)
Q Consensus       197 ~~~~~~~~--------~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----  263 (535)
                      + ..+++.        .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.+++++++..+.     
T Consensus        83 ~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        83 G-LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             h-hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            5 455543        47899999999999999999999999999999999999999999999999999877654     


Q ss_pred             ---cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHH--H
Q 009409          264 ---ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA--V  338 (535)
Q Consensus       264 ---~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  338 (535)
                         +..+||+.|++.+++.++..+.....+|+++.+..+.                    +++....++++.+++++  +
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  221 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------KHKKKRGPIRETLTKHRKPF  221 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------ccccccCCHHHHHHhchHHH
Confidence               3568999999877766555444444444322111000                    00111223456666654  6


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 009409          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF  418 (535)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  418 (535)
                      +...+..++.....+....++|.|+++.+|.+..+.+.+.....++.+++.++.+++.||+++|        +.......
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~--------~~~~~~~~  293 (394)
T TIGR00883       222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR--------PVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH--------HHHHHHHH
Confidence            6666777777777788889999999888899999999999999999999999999999999865        22221222


Q ss_pred             HHHHHH-HHHhhh-cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH-HHhhhhhhhHHHHHHHHHh
Q 009409          419 LSPAVC-MTLSSI-DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGIT-NTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       419 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~igp~i~G~l~  495 (535)
                      +..... ...... ...+........++.+++.+...+.......+.+|+++|+++.|+. +....+|..++|.++|.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence            221111 111111 1223333444455566666666666677777888999999999985 4556678889999999999


Q ss_pred             cccCcchHHHHHHHH
Q 009409          496 DSTHSWSMSLFAPSI  510 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~  510 (535)
                      |+.|.+...++..++
T Consensus       374 ~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       374 AMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHcCcchhHHHHHHH
Confidence            998756655555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.5e-29  Score=255.66  Aligned_cols=400  Identities=17%  Similarity=0.193  Sum_probs=310.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      |.+....++..+........++.+.+.++++++.+..+++|+.++....+.+..++.+.+.||+|.|.+.++|.++.+++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            45566666666666666777788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhH-HHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          193 TALLPLLAGFMPG-LVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       193 ~~~~~~~~~~~~~-l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      .++.+ ++++++. ++..-++.|+|.+..+......+..+|+ ++|+.+.|+..++.++|.++-|++..++.+..|||+.
T Consensus       125 ~~lss-F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~  202 (509)
T KOG2504|consen  125 LLLSS-FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGA  202 (509)
T ss_pred             HHHHH-HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHH
Confidence            98876 5555554 4556789999999999999999998887 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCC--------------------CCcch-hhhhhh--hhhhhhHHHhcc-----C
Q 009409          272 FYIFGLLGIAWFSGFKILQEGETSNGAT--------------------LAPRS-NYINMK--KSLSASLEEMGE-----S  323 (535)
Q Consensus       272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~--~~~~~~~~~~~~-----~  323 (535)
                      +++.+.+.+-.++....+.+......+.                    ..... .....+  .......++.++     .
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSP  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccc
Confidence            9999998876666665555522221111                    00000 000000  000000000011     0


Q ss_pred             CCCCcH---HHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 009409          324 LKDVPW---KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (535)
Q Consensus       324 ~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~  400 (535)
                      .+....   .++++++.++.+.+...+...+++....++|.|.. .+|++..++..+.++.++..++++++.|++.|+..
T Consensus       283 ~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  283 LQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG  361 (509)
T ss_pred             hhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence            111112   57899999999999999999999999999999997 67999999999999999999999999999999986


Q ss_pred             HcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhh
Q 009409          401 ATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG  480 (535)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  480 (535)
                      .+       +.....++.+..++....... ..+...++..++++|+..+.+.........+.++.++-..+.|+...+.
T Consensus       362 ~~-------~~~~~~~~ll~~gl~~~~~p~-~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~  433 (509)
T KOG2504|consen  362 IR-------ALVLFLLTLLIAGLARLFLPF-ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQ  433 (509)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHh
Confidence            43       345555555555555533333 2233445556677788777766666667778899999999999999999


Q ss_pred             hhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhc
Q 009409          481 AVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       481 ~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  523 (535)
                      .++..+||++.|++.|..|+|...|+..+++.++++.+.+...
T Consensus       434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999988877776655544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=3.7e-28  Score=243.36  Aligned_cols=364  Identities=13%  Similarity=0.054  Sum_probs=238.7

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHH-HHHhhhccchhhhcccCCchhhH-HHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATA  194 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~  194 (535)
                      .+.+..++..+......+.+|. +.+++|.|.+++|++.+...+ ++.++++++++ +||+|||+.++ .+.++.+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         19 AFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3344566777787888888777 678899999999999876655 55566655666 99999998754 45555555555


Q ss_pred             HHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccch--hhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          195 LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       195 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      +.+ ++++++.+++.+.+.|...+...|....++.++.++++|  +...++...+.++|.++||++++++.+++|||+.|
T Consensus        98 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f  176 (393)
T PRK15011         98 LFA-WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY  176 (393)
T ss_pred             HHH-HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence            543 566767766665555555567778888888887776555  34557888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhh
Q 009409          273 YIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (535)
Q Consensus       273 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (535)
                      ++.++..++..+.. ..+|+.+++++...  ++.                +.     .++  +.+..+......++....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~-----~~~--~~~~~~~~~~~~~~~~~~  231 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKELPLAT--GTL----------------EA-----PRR--NRRDTLLLFVICTLMWGT  231 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCCCcccc--ccc----------------cc-----ccc--ccccHHHHHHHHHHHHHH
Confidence            99988776654443 34554432211100  000                00     000  112223333333444445


Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      .+.+..+.|.|+++.+|+++.+.+.+.....++.+++.++.|+++||+++|       + .. ..+.......+..... 
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~-------~-~~-~~~~~~~~~~~~~~~~-  301 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR-------F-LM-RVAAVAGVCFYAGMLM-  301 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------H-HH-HHHHHHHHHHHHHHHH-
Confidence            556677899999888999999999888887788888999999999999865       2 11 2222222222222221 


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      .++........++.++..+...........+ ..|++++++.++++...++|..++|.++|.+.|..| +...+.+.+++
T Consensus       302 ~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~-~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~  379 (393)
T PRK15011        302 AHSPAILLGLQLLNAIYIGILGGIGMLYFQD-LMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVM  379 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            2233333333333333333322222333334 445679999999999999999999999999999874 88888776665


Q ss_pred             HHHHHHhhh
Q 009409          512 FYLTGTIVW  520 (535)
Q Consensus       512 ~~~~~~~~~  520 (535)
                      .+++.++.+
T Consensus       380 ~~~~~~~~~  388 (393)
T PRK15011        380 IIATLFCLL  388 (393)
T ss_pred             HHHHHHHHH
Confidence            555444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.4e-31  Score=249.68  Aligned_cols=379  Identities=15%  Similarity=0.166  Sum_probs=280.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      .++.+.++++...+.++|++.+....+.+++.+|++.+..|++.+.+.+.+.++.|++|+++||++||+++.+|..+|++
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            34778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-hhH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  270 (535)
                      +.++.+ +++.+|+++++|.+.|+|.+.+.|.++++++|.+|.++|++++++++.+..+|..+|.+.+..+.+..+ |||
T Consensus       111 Av~~~~-fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~  189 (493)
T KOG1330|consen  111 AVFASG-FSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRW  189 (493)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEE
Confidence            998886 557789999999999999999999999999999999999999999999999999999999999998776 999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhh
Q 009409          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (535)
Q Consensus       271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (535)
                      .|+..+++++++.++.+++.+++++....+.+.+....  +         .........+.+.+++.+....+.+....+
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~--~---------~~ts~~kDl~~l~~~~v~v~~sl~~~a~~f  258 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMV--K---------PFTSVWKDLKVLAKIKVFVLSSLGIIAAQF  258 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcCC--C---------CccchHHHHHHHHccCceeeehHHHHHHHH
Confidence            99999999988776666655544433222211111000  0         000111123455666766666666666666


Q ss_pred             hhHHHHHhhHHHHHHH---hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHH
Q 009409          351 GHYTCLSWLPTYFSEE---LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRK--ICQTIAFLSPAVCM  425 (535)
Q Consensus       351 ~~~~~~~~~p~~l~~~---~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~--~~~~~~~~~~~~~~  425 (535)
                      ...++..|.|.++...   .|++..+..++..+...++.+|..++|.++||+.+...+....+.  .....+....+..+
T Consensus       259 v~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L  338 (493)
T KOG1330|consen  259 VIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL  338 (493)
T ss_pred             hccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence            6667777777776433   355555666677788888999999999999997764333221121  22222222223333


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhh-hhhhccCCcchhHHHHHHHHhhhh-hhhHHHHHHHHHhcccCcch
Q 009409          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLY-CTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLDSTHSWS  502 (535)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~~  502 (535)
                      .+.........+..+.++++|............ ...+.++|++|.++.++-..+..+ |.+-+|.+.|.+.|+.-++.
T Consensus       339 ~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  339 FLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            333332333444445555666655555444433 445668999999999998877655 55666669999998764454

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=3.5e-29  Score=248.89  Aligned_cols=347  Identities=17%  Similarity=0.156  Sum_probs=242.3

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      ..++.++..+.+...+.+..|. +.+++|+|..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4566777778888999999996 999999999999999999999999999999999999999999999999999988777


Q ss_pred             Hhhhh-hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc----------c
Q 009409          197 PLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----------N  265 (535)
Q Consensus       197 ~~~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----------~  265 (535)
                      + ..+ +++.+++.|+++|++.+. .+....++++++|+++|++++++......+|..+++.+++.+..          .
T Consensus        85 ~-~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 G-LAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             H-HHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            5 556 788999999999999654 56678899999999999999999998888888888887776654          3


Q ss_pred             cchhHHHHH-HHHHHHHHH-HHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHH
Q 009409          266 LGWESVFYI-FGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (535)
Q Consensus       266 ~gw~~~f~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (535)
                      .+||+.|++ .+++..+.. +.....+++++.++++.+.+.+    .....      .+........+.+++|+++...+
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK----GARWS------VGTGALGDQLKVFRDRHTWILAL  232 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc----ccccc------ccchhHHHHHHHHhccchhhHHH
Confidence            489999944 454443333 3333334333221111000000    00000      00000013456788888888888


Q ss_pred             HHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 009409          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (535)
Q Consensus       344 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  423 (535)
                      ..++.....+.+..+.|.|+++.+|+++.+++.+.....+.+++++++.|++.||+++|       +...........+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~  305 (366)
T TIGR00886       233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-------RKLLMSFLGVAMGA  305 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-------hhHHHHHHHHHHHH
Confidence            87777777888899999999988999999999989999999999999999999999875       22222222222222


Q ss_pred             HHHHhhhcCCCcHHH-HHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhh
Q 009409          424 CMTLSSIDLGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPG  484 (535)
Q Consensus       424 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~  484 (535)
                      .++......+...+. ....++.....+...........+ ..|+++|++.|+.+.++++|+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       306 FLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPH-IFRRATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchh-hchhhcccHHHHHHHhccCCC
Confidence            222222111102222 222233333333322333333333 456899999999999988764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=1.1e-27  Score=240.77  Aligned_cols=373  Identities=13%  Similarity=0.092  Sum_probs=256.4

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc-----CCch-hhHHHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRK-VLQTGVLIWSLA  192 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~  192 (535)
                      +...++.+++........+|.+.++.|+|.+++|++..+...  .+..+++|+++||+     |||| ++.++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            455677888888999999999999999999999999776665  58999999999999     7775 677777777766


Q ss_pred             HHHHHhhh--hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc-cchh
Q 009409          193 TALLPLLA--GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGWE  269 (535)
Q Consensus       193 ~~~~~~~~--~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw~  269 (535)
                      ..++....  ++++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~  161 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG  161 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence            66654432  34566777878888888889999999999999999999999999999999999999999999885 5999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHh
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (535)
                      ..|++.+++.++..+..+..+|++++++++  ++.     .+.            ....+++++|+|.++...+..++..
T Consensus       162 ~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~--~~~-----~~~------------~~~~~~~l~~~~~~~~~l~~~~l~~  222 (402)
T PRK11902        162 NTYLLMAGLMLAGALTTLWAPEPEVPARPP--RSL-----GEA------------VVGPLRDFFSRRGAWALLLLIVLYK  222 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccc--chh-----HHH------------HHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            999999887766655555555543321110  000     000            0113567889999888777766666


Q ss_pred             hhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH--HHHH
Q 009409          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA--VCMT  426 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  426 (535)
                      ........+.+.++.+.+|+++.+.+++....+ ++.+++..+.+++.||++++       + ...........  +.+.
T Consensus       223 ~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~-------~-~l~~~~~~~~l~~l~~~  294 (402)
T PRK11902        223 LGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY-------R-SLMLFGVLQAVSNLGYW  294 (402)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH-------H-HHHHHHHHHHHHHHHHH
Confidence            554444445556676778999999998876554 46889999999999999865       2 22111111111  1111


Q ss_pred             HhhhcCCCcHHHHHHHHH----HHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcch
Q 009409          427 LSSIDLGLPHWEIVGILT----AGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWS  502 (535)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~  502 (535)
                      ......++.+......++    .++..+...........    .+..++..++.+....++..+++.++|.+.|..| |.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~  369 (402)
T PRK11902        295 VLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCN----RSFSATQYALLSALASVGRVYVGPTSGYLVEAYG-WP  369 (402)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hH
Confidence            112222222323333222    22223322333333333    3334555677777777888878889999999985 88


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccC
Q 009409          503 MSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      ..|.+.+++.+++.++.+...++
T Consensus       370 ~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        370 GFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            88888777666655554444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=2.2e-28  Score=245.99  Aligned_cols=381  Identities=12%  Similarity=0.071  Sum_probs=263.9

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCC-chhhHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIWSLATAL  195 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~  195 (535)
                      -+++.+|+.+.....+.+.++. +.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++.+++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            3566677777777787666555 677799999999999999999999999999999999965 77888887777677666


Q ss_pred             HHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhc--------ccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc
Q 009409          196 LPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS--------IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (535)
Q Consensus       196 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (535)
                      .. ..++++.+++.|++.|++.+...+...++..+.        .....|.+.+|      .+|.++||++++.+....+
T Consensus        86 ~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~  158 (418)
T TIGR00889        86 AA-QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS  158 (418)
T ss_pred             HH-HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch
Confidence            54 567778889999999998887777666654222        22223344444      5788999999988843334


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHH
Q 009409          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (535)
                      |+ .|++.+++.++..+..+.+||+++.++++  +. . .  ++           . .....+.++|+|.++.+.+..++
T Consensus       159 ~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~-~-~--~~-----------~-~~~~~~~~~k~~~~~~~~~~~~~  219 (418)
T TIGR00889       159 NI-QLYITAGSSALLGVFALTLPDIPVAKSTA--KM-S-I--KV-----------M-LGLDAFILFKNKRMAIFFFFSML  219 (418)
T ss_pred             hH-HHHHHHHHHHHHHHHHhcCCCCCCCcccc--cc-C-H--HH-----------H-hhhhHHHHhcCCCeeeHHHHHHH
Confidence            55 45566665555555555566543211110  00 0 0  00           0 00123567888988888777777


Q ss_pred             HhhhhHHHHHhhHHHHHHHhCCCh--------hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          348 GSWGHYTCLSWLPTYFSEELSLNL--------TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       348 ~~~~~~~~~~~~p~~l~~~~g~s~--------~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      ..........+.|.|+++ .|.++        ...+...+...+..+++.++.+++.||+|+|         .....+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~~~  289 (418)
T TIGR00889       220 LGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLSLV  289 (418)
T ss_pred             HHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHH
Confidence            766666677888888865 46543        5668888999999999999999999999864         33334444


Q ss_pred             HHHHHHHHhhhcCCCc---HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH-HhhhhhhhHHHHHHHHHh
Q 009409          420 SPAVCMTLSSIDLGLP---HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN-TVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~igp~i~G~l~  495 (535)
                      ...+...+........   ...++..++.+++.+...+.....+.+..|++.|+++.|+.+ ....+|.++||.++|++.
T Consensus       290 ~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       290 AWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4444333333222111   223345566666666666666667778889999999999997 567899999999999999


Q ss_pred             cccC-----cchHHHHHHHHHHHHHHHhhhhhccCCCCC-CCCCC
Q 009409          496 DSTH-----SWSMSLFAPSIFFYLTGTIVWLAFASSKPQ-NFSTR  534 (535)
Q Consensus       496 ~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  534 (535)
                      |..|     +|...|.+.+++.++++++.+.+.+++++| +.|++
T Consensus       370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  414 (418)
T TIGR00889       370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIKVDDR  414 (418)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCccc
Confidence            9865     378888888887777777777777766554 44554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=8.5e-29  Score=250.43  Aligned_cols=380  Identities=12%  Similarity=0.036  Sum_probs=250.8

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      .+.+.+++..+....+.+++|. +.+++|+|..+.|++.+++.+++.++++++|+++||+|||++++++..+.+++....
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         14 IFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3345566666666777777777 455599999999999999999999999999999999999999988766655443222


Q ss_pred             Hhh--h-----hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchh
Q 009409          197 PLL--A-----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (535)
Q Consensus       197 ~~~--~-----~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (535)
                      ...  .     ..+...++.+++.|.+.....+....+..+ . .+++++.+|......++|.+++|++++.+.+ .+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~  170 (420)
T PRK09528         94 FIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCch
Confidence            111  1     111122333444444444444444443322 2 2567888899999999999999999999876 4899


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHh
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (535)
                      +.|++.+++.++..+..+..+++++++....+++++    +          ++.......+..+|+|.++.+.+..++..
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~  236 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA----N----------ASAVSLKDALALLKLPKFWFLVLYVIGVA  236 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccccchhhhccchhc----c----------cccccHHHHHHHccCCCeEeehHHHHHHH
Confidence            999998887776665555554433222110000000    0          00000112346778888877666555555


Q ss_pred             hhhHHHHHhhHHHHHHHh---CCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Q 009409          350 WGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (535)
                      ..+.....++|.|+.+.+   +.+..+.|.+.+...++.+++.++.|++.||+++|+         ....+.++..+...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~---------~~~~~~~l~~~~~~  307 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN---------ALLLAGTIMAVRII  307 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch---------hhHHHHHHHHHHHH
Confidence            555556667888876554   456677888889899999999999999999998762         12222333333333


Q ss_pred             HhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH-HHHhhhhhhhHHHHHHHHHhcccCcchHHH
Q 009409          427 LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI-TNTVGAVPGIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      +... .++.++.+...++.++..+........+..+..+++.+++..+. .++...+|.+++|.+.|++.|..| |...|
T Consensus       308 l~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f  385 (420)
T PRK09528        308 GSGF-ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTY  385 (420)
T ss_pred             HHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHH
Confidence            3332 23344444445555555555455555566677888888888766 677889999999999999999885 88889


Q ss_pred             HHHHHHHHHHHHhhhhhccC
Q 009409          506 FAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~  525 (535)
                      ...+++.++..++.+...++
T Consensus       386 ~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        386 LILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            88777666665555544443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.9e-28  Score=223.52  Aligned_cols=362  Identities=21%  Similarity=0.236  Sum_probs=286.9

Q ss_pred             HhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHH
Q 009409          127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL  206 (535)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (535)
                      --..+.++|.++.+.+++|+|.+.+|++.++..+...++.++..++.+|+|.++.+..++++.+++..+-...  +...+
T Consensus        25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~--~~~~L  102 (395)
T COG2807          25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG--GLPLL  102 (395)
T ss_pred             chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cHHHH
Confidence            3566778899999999999999999999999999999999999999999999999999999999999887644  44788


Q ss_pred             HHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-chhHHHHHHHHHHHHHHHH
Q 009409          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSG  285 (535)
Q Consensus       207 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~  285 (535)
                      +.+-.+.|.|.+......+.++-+.|| ++-+..+|+|....++|.++++.+...+.++. |||....+-++.+++.++.
T Consensus       103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 78899999999999999999999999998887 7999999999988887777


Q ss_pred             hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHH
Q 009409          286 FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE  365 (535)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~  365 (535)
                      ++.-.. ++......                       .+..+-..++|||..|.+.+.+.+.+..+|....|+|.++.|
T Consensus       182 WlPq~~-r~~~~~~~-----------------------~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~  237 (395)
T COG2807         182 WLPQAL-REQAASIA-----------------------TKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID  237 (395)
T ss_pred             Hhhhcc-cccccccc-----------------------cccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            655431 11100000                       001112468899999999999999999999999999999986


Q ss_pred             HhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 009409          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA  445 (535)
Q Consensus       366 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (535)
                      . |+|+.++|.+.++..+..++..+....+.+|..++       |... ........+.+.-+.+.+...++..  .+++
T Consensus       238 ~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~-------r~~~-~~~~~~~l~G~~G~~~~P~~~~~lw--~~ll  306 (395)
T COG2807         238 R-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ-------RPLV-VLALLLMLVGLVGLLLAPGQLPILW--ALLL  306 (395)
T ss_pred             c-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc-------chHH-HHHHHHHHHHHHHHHHhhhhHHHHH--HHHH
Confidence            4 99999999999999999999999999999996654       2222 2222222222222222233323222  4666


Q ss_pred             HHHHhhhhhhhhhhh-hhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          446 GLALSSFALSGLYCT-HQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       446 g~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      |++.+...+.....+ .+..+++..+...|+.+.++++-...||.+.|++.|..|+|...+...+.+.+++.+.-+..-|
T Consensus       307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcch
Confidence            777555555555444 4446778899999999999999999999999999999999999988877766665555555444


Q ss_pred             CC
Q 009409          525 SS  526 (535)
Q Consensus       525 ~~  526 (535)
                      ++
T Consensus       387 ~~  388 (395)
T COG2807         387 NR  388 (395)
T ss_pred             hH
Confidence            43

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1.9e-28  Score=277.89  Aligned_cols=377  Identities=14%  Similarity=0.080  Sum_probs=267.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhh-hhhcccCCCc-cchhHHHHHHHHHHHhhhccchhhhcccCCchhhHH--HHHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAII-PMSHRFGWNS-SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT--GVLIWS  190 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~--~~~~~~  190 (535)
                      ++...++..+..++....+..... .+..+.+.+. ...++..+++.+++.++++++|+++||+|||+++..  ...+..
T Consensus        16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            333334444444444444444433 3444444433 446888889999999999999999999999997643  222222


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhH
Q 009409          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (535)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (535)
                      ....+.++..++++.++++|+++|++.+...|+..+++.+++++++|++++|+..++.++|.++||+++|++.+..+|++
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~  175 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            22223333457789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhh
Q 009409          271 VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSW  350 (535)
Q Consensus       271 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  350 (535)
                      .|+..+++.++.++..+.++++++.......... ..  ++     .        ...++.+.+++.+|...+..++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~  239 (1140)
T PRK06814        176 LVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRN-II--RS-----T--------ITLLKYAKADKRIWLAILGISWFWL  239 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccc-hH--HH-----H--------HHHHHHHhcCchHHHHHHHHHHHHH
Confidence            9966555555555555666654432211111000 00  00     0        0135678889999999888888888


Q ss_pred             hhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh-
Q 009409          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS-  429 (535)
Q Consensus       351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  429 (535)
                      ..+.+..++|.|+++.+|.++...|++.+...++.++|.++.|++.++...++.       .. ...++.....+.+.. 
T Consensus       240 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~-------~~-~~~~~~~~~~~~l~~~  311 (1140)
T PRK06814        240 VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY-------VP-IGALLMGLFGLDLAFA  311 (1140)
T ss_pred             HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee-------eh-HHHHHHHHHHHHHHhc
Confidence            888888999999999899999999999999999999999999999987654321       11 111111111111111 


Q ss_pred             -----------------hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHH
Q 009409          430 -----------------IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTG  492 (535)
Q Consensus       430 -----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G  492 (535)
                                       ....+.+..++..+++|++.+...+.....+.+..+++.+|+++|+.+++..+|..+++.++|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g  391 (1140)
T PRK06814        312 SSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA  391 (1140)
T ss_pred             ccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence                             111334445556667787777777777778888899999999999999999999999999999


Q ss_pred             HHhcccCcchHHHHHHHHHHHHH
Q 009409          493 YLLDSTHSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       493 ~l~~~~g~~~~~~~~~~~~~~~~  515 (535)
                      .+.+...++...+++.+++.++.
T Consensus       392 ~l~~~~~~~~~~~~~~~~~~~~~  414 (1140)
T PRK06814        392 LLQALGFSIPWIILFIALANLIV  414 (1140)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHH
Confidence            99865445666665544433333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.97  E-value=8.2e-28  Score=244.18  Aligned_cols=378  Identities=17%  Similarity=0.131  Sum_probs=288.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.+-.+.++.+++.++..+.....+.+..+..-|+...+++.++..+...+..+++|.++||++||++++.+.++.++..
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            44556667778888888888888888888888899999999999999999999999999999999999999988776655


Q ss_pred             HHHHhhh----hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchh
Q 009409          194 ALLPLLA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (535)
Q Consensus       194 ~~~~~~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (535)
                      ++++...    .+.+.+++.-++.|++.+...|...+++.+..|+++...++++.....+++.++||.++|.+....|-.
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~  169 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAA  169 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4443332    346788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHh
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGS  349 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  349 (535)
                      +.|.+.++..++.+......+++.+++..   +++..       ...        -+..++.+.++|.+...++..++..
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~~~~---~~e~~-------~~~--------l~~G~ryv~~~~~l~~~l~~~~~~~  231 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPPSSL---PRERF-------FSA--------LREGLRYVRSSPPLRSVLLRSFLFN  231 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccccc---chhhh-------hhh--------HHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999888776655555444433221111   11100       000        0112455666777776666666666


Q ss_pred             hhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 009409          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (535)
                      +....+...+|.+.++.+|.++...|++.+..++|+++|.++.+++.+|++.+         .....+.+..++.++...
T Consensus       232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLA  302 (524)
T ss_pred             HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHh
Confidence            66666777899999999999999999999999999999999999988877543         122233333343333333


Q ss_pred             hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHH
Q 009409          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPS  509 (535)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~  509 (535)
                      + ..+.+...+.+++.|.+.........+..+...|++.+|+++++++++...+..+|..+.|.+.+..| ...++.+.+
T Consensus       303 l-~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~  380 (524)
T PF05977_consen  303 L-SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAG  380 (524)
T ss_pred             c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHH
Confidence            3 23344445566667777666666666777788999999999999999999999999999999999985 666776666


Q ss_pred             HHHHHHHHhhh
Q 009409          510 IFFYLTGTIVW  520 (535)
Q Consensus       510 ~~~~~~~~~~~  520 (535)
                      ++.+++.++.+
T Consensus       381 ~~lll~~~~~~  391 (524)
T PF05977_consen  381 AALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHH
Confidence            55555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=8.9e-28  Score=224.67  Aligned_cols=357  Identities=16%  Similarity=0.127  Sum_probs=283.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      ..++.+...+++.++......+.+|.+++.++++..+++++...++.+|.++.++.|++.+|+|+|+.++.++.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34455566677777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH--hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc------
Q 009409          194 ALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN------  265 (535)
Q Consensus       194 ~~~~--~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------  265 (535)
                      .+..  ....++..+++.-|+.|.|.+...+..+.+++...++++....+++.+..+++|.+++|++++.+..+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            8873  23466788999999999999999999999999999998999999999999999999999999988762      


Q ss_pred             -------------cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHh
Q 009409          266 -------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAI  332 (535)
Q Consensus       266 -------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (535)
                                   ..|+++|.+.+...+++.+.....+.++.+.......                    +.+.....++
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~--------------------~~~~~~~~~l  232 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG--------------------ASGSAGLSSL  232 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc--------------------ccccchHHHH
Confidence                         2488888888877766665555544333222111000                    0001134688


Q ss_pred             hhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHH
Q 009409          333 FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKI  412 (535)
Q Consensus       333 ~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~  412 (535)
                      +++|+++...+..|++......+..|++.|+.+..|++..+++...+..+.+.++|++++.++..|+...        |.
T Consensus       233 ~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~  304 (422)
T COG0738         233 FQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KY  304 (422)
T ss_pred             HhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HH
Confidence            9999999999999999999999999999999887899999999999999999999999999999998653        23


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHH
Q 009409          413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTG  492 (535)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G  492 (535)
                      +...+.....++.....   .+..+.+.+.++.|++.+...|.......+..+ ++ ....|..-.+.-+|+++.|.+.|
T Consensus       305 Laf~a~~~ill~~~~~l---~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G  379 (422)
T COG0738         305 LAFYALIAILLLLAVAL---IGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQG  379 (422)
T ss_pred             HHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHH
Confidence            32222222222222222   223566667788899999999988888888777 44 33444445556789999999999


Q ss_pred             HHhcccCcchH
Q 009409          493 YLLDSTHSWSM  503 (535)
Q Consensus       493 ~l~~~~g~~~~  503 (535)
                      ++.|..|....
T Consensus       380 ~i~d~~g~~~~  390 (422)
T COG0738         380 VIADMFGIQLT  390 (422)
T ss_pred             HHHHhhhhHHH
Confidence            99999974333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=1.6e-27  Score=239.21  Aligned_cols=376  Identities=12%  Similarity=0.033  Sum_probs=260.7

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhh-hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      +..+...+++.+.....+.+.+|.+ .+++|.+..+.|++.+++.+++.++++++|+++||+|||+.++.+....+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3455566777888888888888874 567999999999999999999999999999999999999999887666554433


Q ss_pred             HHHh--h-----hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc
Q 009409          195 LLPL--L-----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (535)
Q Consensus       195 ~~~~--~-----~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (535)
                      ....  .     .+.+..+++.+++.|++.+...+....+..+..  ++++..+|......++|.++||++++.+.+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-ID  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cC
Confidence            2211  1     122334567788999998888888887776643  344567788888899999999999998865 59


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHH
Q 009409          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (535)
                      ||+.|++.+++.++..+..+..++++++++... +..+             ..++..+..++++++|||.++.+.+..++
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~  226 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-NALG-------------ANASAFSLKLALELFRQRKFWMFVLYVVG  226 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-cccc-------------cccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence            999999988887766555444433322111000 0000             00001111235678899998877777666


Q ss_pred             HhhhhHHHHHhhHHHHHHHh---CCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Q 009409          348 GSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC  424 (535)
Q Consensus       348 ~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (535)
                      ....+.....+.|.|+++.+   +.+....|.+.+...+..+++....+++.||+++|+         ...++....++.
T Consensus       227 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~---------~l~~~~~l~~l~  297 (396)
T TIGR00882       227 VACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN---------ALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHH
Confidence            66666666678899987665   456667788888888999999999999999998752         222333333333


Q ss_pred             HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH-HHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          425 MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI-TNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      ..+... .++.++.+...++.+.+.............+..+++.++++.+. .+....+|+.++|.++|++.|..| |..
T Consensus       298 ~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~  375 (396)
T TIGR00882       298 IIGSSF-ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQG  375 (396)
T ss_pred             HHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHH
Confidence            333222 33444445555555555443333333344555677777777766 678899999999999999999885 888


Q ss_pred             HHHHHHHHHHHHHHhh
Q 009409          504 SLFAPSIFFYLTGTIV  519 (535)
Q Consensus       504 ~~~~~~~~~~~~~~~~  519 (535)
                      +|.+.+++.++..++.
T Consensus       376 ~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       376 AYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988777666655543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=1.5e-28  Score=257.35  Aligned_cols=288  Identities=17%  Similarity=0.174  Sum_probs=225.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      .++.+++.++...+.....+..++.+.++|+++..+.|++.+.+.+++.++.++.+++.||+|||+++.++.++++++++
T Consensus        34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            33455556777777788888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhhh-------------------------------------------------h-hhhHHHHHHHHhhhccCCchhhH
Q 009409          195 LLPLLA-------------------------------------------------G-FMPGLVLSRVLVGIGEGVSPSAA  224 (535)
Q Consensus       195 ~~~~~~-------------------------------------------------~-~~~~l~~~~~~~G~~~~~~~~~~  224 (535)
                      +.++..                                                 + .+..++++|+++|+|.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            875321                                                 0 24567899999999999999999


Q ss_pred             HHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc----------------------chhHHHHHHHHHHHHH
Q 009409          225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL----------------------GWESVFYIFGLLGIAW  282 (535)
Q Consensus       225 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------gw~~~f~~~~~~~~~~  282 (535)
                      .+++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987542                      2777888888887776


Q ss_pred             HHHhhhcccCCCCCCCCCC-cchhhhhhhhhhhhhHHHhccCC--CCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhh
Q 009409          283 FSGFKILQEGETSNGATLA-PRSNYINMKKSLSASLEEMGESL--KDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (535)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (535)
                      .+.++++|++.+....... +.++....++.......+.....  ....++.+++||.++...+..++.....+++.+|+
T Consensus       274 ~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~l  353 (633)
T TIGR00805       274 SIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFL  353 (633)
T ss_pred             HHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677665433211100 00000000000000000000000  01235688999999999999999999999999999


Q ss_pred             HHHHHHHhCCChhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHc
Q 009409          360 PTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIAT  402 (535)
Q Consensus       360 p~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~  402 (535)
                      |.|+++.+|+++.+++++..+..+ +.+++.+++|+++||++.+
T Consensus       354 P~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       354 PKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence            999999999999999998887776 5678999999999998744

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.96  E-value=5.1e-26  Score=232.04  Aligned_cols=407  Identities=14%  Similarity=0.111  Sum_probs=280.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhh-cc--cCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMS-HR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIW  189 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~  189 (535)
                      +.+..+.+..+...++.+...+.+|.+. ++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.+++
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            3444555566666777777777777754 44  89999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccc---hhhHHHHHHHhhhhHHHHHhhhHHHhcccc
Q 009409          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE---RSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (535)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (535)
                      +++.++.+ .+++++.+++.|++.|+|.+...+...+++++++|+++   |+.++++++.+.++|.++||++++++.++.
T Consensus        90 ~~g~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924        90 MLGHFMLA-MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHH-hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99987775 55566788889999999999999999999999998654   888999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcccCCCCCC---CCCCcchhhhhhhh-------------hh--hhh-H----------
Q 009409          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNG---ATLAPRSNYINMKK-------------SL--SAS-L----------  317 (535)
Q Consensus       267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------------~~--~~~-~----------  317 (535)
                      ||++.|++.++..++..+.+...++..++.+   ....++++......             .+  .+. .          
T Consensus       169 g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (475)
T TIGR00924       169 GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTL  248 (475)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999999988655544444433332211111   10011100000000             00  000 0          


Q ss_pred             ------HHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhh----HHHHHhhHHHHHHH
Q 009409          318 ------EEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSILPPLASVL  387 (535)
Q Consensus       318 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~----~g~~~~~~~~~~~~  387 (535)
                            .....+ +.....+..|...+..+.+...+....+....+.++.+.++..+.+...    .+.+.++..+..++
T Consensus       249 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil  327 (475)
T TIGR00924       249 AVIIFFFRLAFK-PRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVV  327 (475)
T ss_pred             HHHHHHHHHHHh-ccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHH
Confidence                  000000 0011111122233444555555666666677777888887654443222    56778888888888


Q ss_pred             HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh--------cCCCcHHHHHHHHHHHHHHhhhhhhhhhh
Q 009409          388 VTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--------DLGLPHWEIVGILTAGLALSSFALSGLYC  459 (535)
Q Consensus       388 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  459 (535)
                      ..++..++..|..+|+.......|  +.+++++.++++.....        ...+.+|.++..++.+++.....+.....
T Consensus       328 ~~p~~~~~~~~l~~~~~~~~~~~k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~  405 (475)
T TIGR00924       328 GSPVLAMIWTRLGRKGKDPTTPLK--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSW  405 (475)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            887777776677665332222122  23444444444333221        12356677888888999988888888888


Q ss_pred             hhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          460 THQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       460 ~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      ..+..|++.||+++|+......+|..+++.+.+...+.. ++...|...++..++.+++.++..++
T Consensus       406 ~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (475)
T TIGR00924       406 WTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-GVTGVFGKIGLVTLLVGVVMALMVPW  470 (475)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            889899999999999999999999999999988777765 47767777776666666666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=5.4e-26  Score=227.75  Aligned_cols=367  Identities=11%  Similarity=0.054  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHH--HHHHHHHHHhhhccc-hhhhcccCCchhhHHHHHHH-HH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLV--QSSFFWGYALSQLPG-GWLAKIFGGRKVLQTGVLIW-SL  191 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~s~~~~~~~~~~~~~-g~l~dr~g~r~~~~~~~~~~-~~  191 (535)
                      +..+...++.+++......+.+|.+.++.|.|.+++|++  .++..+...+.++++ ++..||+||||..++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            556777888999999999999999999999999999997  466677777777777 55789999999876555332 21


Q ss_pred             HHHHHHhh--h-hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccch
Q 009409          192 ATALLPLL--A-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (535)
Q Consensus       192 ~~~~~~~~--~-~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (535)
                      +.......  . .....++...++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.++.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            22222211  2 21234455556666777788888888888888888888888889888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHH
Q 009409          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG  348 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  348 (535)
                      |..|++.+++.++..+..++++++++++++.  ++ +                   +..++++.+|+|.++...+..++.
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~--~~-~-------------------~~~~~~~~l~~~~~~~~~~~~~l~  220 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA--PL-A-------------------RRASLFRFFRRPLAWSLLALALLS  220 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc--ch-h-------------------hHHHHHHHHcCcCHHHHHHHHHHH
Confidence            9999999988776665555555443211100  00 0                   011246788999888888888888


Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH-HHHHH
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP-AVCMT  426 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  426 (535)
                      ..+......+.+.|++| .|+++.+.|.+.....+ ..+++..+.|++.||++++       + ... .+.+.. ...+.
T Consensus       221 ~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-------~-~l~-~~~~~~~~~~~~  290 (390)
T TIGR02718       221 AMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-------R-TFI-LGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-------H-HHH-HHHHHHHHHHHH
Confidence            88888888899999986 69999999998887764 5667789999999999865       2 222 222212 11111


Q ss_pred             Hhh-hc--CCCcHHH-HHHHHHHHHHHhhhhhhhhhhhhhccCC-cchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcc
Q 009409          427 LSS-ID--LGLPHWE-IVGILTAGLALSSFALSGLYCTHQDISP-EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW  501 (535)
Q Consensus       427 ~~~-~~--~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  501 (535)
                      ... ..  ....... .....+.++..+...........+..++ +.+++.+++.+...++|..++|.++|.++|..| +
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~  369 (390)
T TIGR02718       291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-Y  369 (390)
T ss_pred             HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence            111 10  1111222 2222222333333334444444455565 889999999999999999999999999999885 8


Q ss_pred             hHHHHHHHHHHHHH
Q 009409          502 SMSLFAPSIFFYLT  515 (535)
Q Consensus       502 ~~~~~~~~~~~~~~  515 (535)
                      ...|...+++.+++
T Consensus       370 ~~~f~~~~~~~l~a  383 (390)
T TIGR02718       370 AGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77887766655444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=1e-26  Score=264.76  Aligned_cols=367  Identities=16%  Similarity=0.106  Sum_probs=255.5

Q ss_pred             HHHHHHHH-hhhhhhHhhhhhhhcccCCCc--cchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          120 SLAFVICN-MDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       120 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      ++..++.. .+........+.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++..+..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~   94 (1146)
T PRK08633         15 LLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLI   94 (1146)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            33444433 333344444555666666654  447899999999999999999999999999999998877655554433


Q ss_pred             H--hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc--------c
Q 009409          197 P--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------L  266 (535)
Q Consensus       197 ~--~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~  266 (535)
                      .  ...++++.++++|++.|++.+...+...+++.|++++++|++++|+...+..+|.++|+++++++.+.        +
T Consensus        95 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~  174 (1146)
T PRK08633         95 VLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI  174 (1146)
T ss_pred             HHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            2  23466889999999999999999999999999999999999999999999999999999999999875        2


Q ss_pred             -chhHHHHHHHHHH-HHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHH
Q 009409          267 -GWESVFYIFGLLG-IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA  344 (535)
Q Consensus       267 -gw~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (535)
                       +|++.+.+.++.. ++.++..+.+++.++...... ++.......        +     ....++.+++++.++...+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~-----~~~~~~~l~~~~~~~~~~~~  240 (1146)
T PRK08633        175 LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-DKKKYLFPK--------L-----LWRNLKLLRSDRVLWLAIIG  240 (1146)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-cccccccHH--------H-----HHHHHHHHhcCcHHHHHHHH
Confidence             3445544444333 233334444554432221110 000000000        0     01124677888888888777


Q ss_pred             HHHHhhhhHHHHHhhHHHHHHHhCCChh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 009409          345 HFCGSWGHYTCLSWLPTYFSEELSLNLT-EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (535)
Q Consensus       345 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  423 (535)
                      .++.....+.+..++|.|+.+.+|++.. ..+++.+...++.+++.++.+++.||+++++.         ..++.+..++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~---------~~~~~~~~~~  311 (1146)
T PRK08633        241 LSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL---------VPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc---------hhHHHHHHHH
Confidence            7777777778888999999988999998 99999999999999999999999999875421         1222222222


Q ss_pred             HHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      ++++... ..+.+..++.+++.|++.+.........+.+..+++.+|+++|+.+++..+|.++++.+++.+.....++..
T Consensus       312 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~  390 (1146)
T PRK08633        312 SLFLLPT-APSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAG  390 (1146)
T ss_pred             HHHHHHH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence            2222222 223344455566677777766666667777778999999999999999999998888887776553213334


Q ss_pred             HHHHHHH
Q 009409          504 SLFAPSI  510 (535)
Q Consensus       504 ~~~~~~~  510 (535)
                      .+++.++
T Consensus       391 ~~~~~~~  397 (1146)
T PRK08633        391 LFYLIAL  397 (1146)
T ss_pred             HHHHHHH
Confidence            4444333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=8.1e-26  Score=230.50  Aligned_cols=406  Identities=12%  Similarity=0.100  Sum_probs=264.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSL  191 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  191 (535)
                      +-+..+++..+...++.+.....++. +.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.+++++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            44444555555566666666655444 677899999999999999998888889999999999 9999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhccccc--chhhHHHHHHHhhhhHHHHHhhhHHHhccccchh
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (535)
                      +.+++....+....+++.|+++|+|.|...|...+++.|.+|++  +|++++++++.+.++|.++||.+++++.++.|||
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            99887543332334558999999999999999999999999876  4578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCC---C-CCCCcchhhhh-----------hhhhhhh-hHHH--------------
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSN---G-ATLAPRSNYIN-----------MKKSLSA-SLEE--------------  319 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~-----------~~~~~~~-~~~~--------------  319 (535)
                      +.|++.++..++.++.+...++..++.   . ....+......           ....... ....              
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  253 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF  253 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            999997654443333333333221111   1 00011101000           0000000 0000              


Q ss_pred             hccCCCCCcHHHhhhcHHHHHHHHH--HHHHhhhhHHHHHhhHHHHHHHhCCChh----hHHHHHhhHHHHHHHHHHHHH
Q 009409          320 MGESLKDVPWKAIFRSKAVWAMIYA--HFCGSWGHYTCLSWLPTYFSEELSLNLT----EAAWVSILPPLASVLVTSIAA  393 (535)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~p~~l~~~~g~s~~----~~g~~~~~~~~~~~~~~~~~g  393 (535)
                      ..+..+.   .+.+|+|.+....+.  ..+....+....+.++.+.++..+.+..    ....+..+..+..++..++.+
T Consensus       254 ~~~~~~~---~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~  330 (489)
T PRK10207        254 FREAFKL---DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILA  330 (489)
T ss_pred             HHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHH
Confidence            0000000   145566655443322  3344444555567788888653333110    112233445566667888889


Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH-------hhhc--CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 009409          394 QFADNLIATGVETTMVRKICQTIAFLSPAVCMTL-------SSID--LGLPHWEIVGILTAGLALSSFALSGLYCTHQDI  464 (535)
Q Consensus       394 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  464 (535)
                      ++.||+++|+.......+...  ++++.++++..       ....  ..+.++.+...++.+++.....+.....+.+..
T Consensus       331 ~l~~rl~~r~~~~~~~~k~~~--G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a  408 (489)
T PRK10207        331 GIYTHLGSKGKDLSMPMKFTL--GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALV  408 (489)
T ss_pred             HHHHHHhhCCCCCCcHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            999999988654443344333  22222222211       1111  123455666778889999988999899999999


Q ss_pred             CCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc---------ccCcchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          465 SPEYASILLGITNTVGAVPGIVGVALTGYLLD---------STHSWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       465 ~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      |++.+|.++|+.+...++|+.++..+.+....         ..+.+...|...++..++++++++...+
T Consensus       409 P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        409 PQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888875531         0113566777766666666666655444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.6e-27  Score=219.74  Aligned_cols=352  Identities=14%  Similarity=0.109  Sum_probs=268.0

Q ss_pred             hhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccC
Q 009409          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG  218 (535)
Q Consensus       139 ~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~  218 (535)
                      .=.++.+-+.+++|++++.+.+...+..++.|.+.||+|+|..+++|++++...+++++ +.++++++++.|.++|+|.+
T Consensus        96 ~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen   96 AEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             hhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHHHHHHHHhhhhHH
Confidence            34455677899999999999999999999999999999999999999999999998885 77888999999999999999


Q ss_pred             CchhhHHHHhhhccccc-chhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 009409          219 VSPSAATDLIARSIPLE-ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNG  297 (535)
Q Consensus       219 ~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  297 (535)
                      .......++++|.||++ ||++++|+...+.++|..+||++||.+.+..|.+..|++.+++.++-..+.+++.++.+.+.
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            99999999999999864 57999999999999999999999999999999999999999999887777777666544333


Q ss_pred             CCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHH
Q 009409          298 ATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWV  377 (535)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~  377 (535)
                      +..                       .+..++.+++++|.++.........+.+....-..++.++.|.+.-+..+.|+.
T Consensus       255 ~~~-----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~  311 (464)
T KOG3764|consen  255 DST-----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLA  311 (464)
T ss_pred             ccc-----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeee
Confidence            111                       113356899999999998887777777777778889999988888556699999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 009409          378 SILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGL  457 (535)
Q Consensus       378 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  457 (535)
                      +....+...++..+.|.+.||++..       |......+.+............. +..-+++-.+..+++.+.......
T Consensus       312 fLp~~~~y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~-~~~~L~vp~~~l~~~i~~~dasl~  383 (464)
T KOG3764|consen  312 FLPASLSYAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFAT-SIAQLWVPNFGLGFGIGLADASLI  383 (464)
T ss_pred             ecccccchhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhh-hHHHHhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999854       22222233333332222222211 111122222222333232222222


Q ss_pred             h---hhhhccCC---cchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhc
Q 009409          458 Y---CTHQDISP---EYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       458 ~---~~~~~~~~---~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  523 (535)
                      .   ...+....   +..|.+.++......+|..+||.++|.+.+..| +.+...+.+..-++-+.++.+.+
T Consensus       384 P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG-F~wl~~iig~~n~iyapvl~ll~  454 (464)
T KOG3764|consen  384 PTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG-FEWLMTIIGILNLIYAPVLLLLR  454 (464)
T ss_pred             hhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   22222222   267899999999999999999999999999986 77776666665555555544443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=1.4e-25  Score=222.09  Aligned_cols=320  Identities=13%  Similarity=0.056  Sum_probs=230.9

Q ss_pred             hhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc-----CCchhh-HHHHHHHHHHHHHHHhhh--hh
Q 009409          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-----GGRKVL-QTGVLIWSLATALLPLLA--GF  202 (535)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~~~--~~  202 (535)
                      ..+++..|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||.+ +.+.++.++.....++..  .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456778899999999999999999755 555555 89999999998     898874 566666666655554332  34


Q ss_pred             hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc--------hhHHHHH
Q 009409          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG--------WESVFYI  274 (535)
Q Consensus       203 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--------w~~~f~~  274 (535)
                      .+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..|        ||..|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            45577777888888888899999999999999999999999999999999999999999988888        9999999


Q ss_pred             HHHHHHHHHHHhhhc-ccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHH---HHHHHHHHHHHhh
Q 009409          275 FGLLGIAWFSGFKIL-QEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKA---VWAMIYAHFCGSW  350 (535)
Q Consensus       275 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~  350 (535)
                      .++..++..+..++. +|+++.++ .  +++..    +   +         .+..++.++++|.   ++.+.+..++...
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~-~--~~~~~----~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDAS-V--PKPLT----Q---A---------VLKPIREFFQRKNMIQALLLLLLIVLYKL  223 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccc-c--chhHH----H---H---------HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            988776655554433 43221110 0  00000    0   0         0112456667664   7777777777788


Q ss_pred             hhHHHHHhhHHHHHHHhCCChhhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 009409          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPP-LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (535)
Q Consensus       351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (535)
                      +.+....++|.|+++ +|++..+.+.+....+ +..+++.++++++.||+++|       + .. ....++.++...+..
T Consensus       224 ~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-------~-~l-~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       224 GDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-------Y-AL-LLFGIVQALTNAGFV  293 (356)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-------H-HH-HHHHHHHHHHHHHHH
Confidence            888889999999987 8999999998877665 56789999999999999865       2 22 222222222222211


Q ss_pred             hc--C--------CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhh
Q 009409          430 ID--L--------GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA  481 (535)
Q Consensus       430 ~~--~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  481 (535)
                      ..  .        ...+......++.+++.+...+.......+..|++++|+.+|+.++..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       294 WLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            11  1        1223344445556777777777888888888999999999999988765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=8.5e-25  Score=222.80  Aligned_cols=343  Identities=13%  Similarity=0.095  Sum_probs=236.1

Q ss_pred             HhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc----cCCch-hhHHHHHHHHHHHHHHHhhh
Q 009409          127 NMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRK-VLQTGVLIWSLATALLPLLA  200 (535)
Q Consensus       127 ~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~~~  200 (535)
                      .+....+..+ .+.+.+++|++..++|++.++..+..++..++.|+++||    +|||| .++.+...++++.+++. ..
T Consensus        12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~-~~   90 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF-TT   90 (437)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH-hC
Confidence            3444445544 445778899999999999999999999999999999998    67744 56677777776665553 33


Q ss_pred             hh------hhHHHHHHHHhhhccCCchhhHHHHhhhcc-cccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-------cc
Q 009409          201 GF------MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------NL  266 (535)
Q Consensus       201 ~~------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~  266 (535)
                      ++      ...+++.+++.+++.+...+...++..+.. ++++|++..++...+..+|..+++.+.+.+..       ..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~  170 (437)
T TIGR00792        91 PDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKF  170 (437)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            22      345667788888888887777788888887 56899999999999888888887776655542       45


Q ss_pred             chhHHHHHHHHHHHHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH
Q 009409          267 GWESVFYIFGLLGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (535)
Q Consensus       267 gw~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (535)
                      +||+.+++.+++.++..+.. +..+|++++...+.+++.                   .....++.+++||.++...+..
T Consensus       171 g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~~  231 (437)
T TIGR00792       171 GWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKL-------------------SLKQIFKALFKNDQLLILCLAY  231 (437)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCC-------------------CHHHHHHHHhCCHHHHHHHHHH
Confidence            89999999988876665443 444443311110000000                   0011246788999999888888


Q ss_pred             HHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCM  425 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (535)
                      ++...+.+....+.+.|.+..++ +....+.+.....++.+++.++.+++.||+|+|         .....+....++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~  301 (437)
T TIGR00792       232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK---------ILFAGGILLMVLGY  301 (437)
T ss_pred             HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHH
Confidence            88877777766666767655555 455667777778899999999999999999864         22223333333333


Q ss_pred             HHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-------CCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          426 TLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDI-------SPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      .......++.....+..++.+++.+...+.......+..       +++.+|++.|+.++...+|..+++.+.|.+.+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       302 LIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333222222333344445556665555544444444433       3566899999999999999999999999999876


Q ss_pred             C
Q 009409          499 H  499 (535)
Q Consensus       499 g  499 (535)
                      |
T Consensus       382 G  382 (437)
T TIGR00792       382 G  382 (437)
T ss_pred             C
Confidence            4

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=4e-25  Score=214.35  Aligned_cols=391  Identities=13%  Similarity=0.036  Sum_probs=264.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccc-hhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSV-AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      ...++|+..|+ ---+.+.+.+.|.+.+++|+|..+ .|.+.+++..+|+++++++|+++||+|.|+++.++.+.+++..
T Consensus        28 ~~~~lC~fGF~-~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        28 LVLYLCFYGFM-AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHH-HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            33334444433 345778888999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      ++++ +++++..+.+.|++.|++.|... ....++..|+|+++|+++.|+..++..+|.++++++++. ...+|||+.+.
T Consensus       107 ~L~~-fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~  183 (511)
T TIGR00806       107 LLLL-LGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST  183 (511)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence            8886 57778999999999999999999 999999999999999999999999999999999999999 45679997665


Q ss_pred             HHHH---HHHHHHHHhhhcccCCCCCCCCCCcc---h---hhhhh-hhhhhhhHHHhccC------CCCCcHHHhhhcHH
Q 009409          274 IFGL---LGIAWFSGFKILQEGETSNGATLAPR---S---NYINM-KKSLSASLEEMGES------LKDVPWKAIFRSKA  337 (535)
Q Consensus       274 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  337 (535)
                      +.-+   ...+.+++.+++|.+++..-..+.+.   .   +.... .+......+..+..      .-...++...+|+.
T Consensus       184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~  263 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQ  263 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence            5432   23455666777775544211111000   0   00000 00000000000000      00112456678888


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 009409          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIA  417 (535)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  417 (535)
                      +..-.+-+.+..++++.+.+|......+.-+-....-|.+-++..+.+.+..+..|++-.++.+       .....+.+.
T Consensus       264 vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~-------~~~l~l~v~  336 (511)
T TIGR00806       264 LLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR-------WSKLLIAVV  336 (511)
T ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh-------hHHHHHHHH
Confidence            8888888888889999999988888865533222255667788888888888888887544321       012233333


Q ss_pred             HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHH----HH
Q 009409          418 FLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALT----GY  493 (535)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~----G~  493 (535)
                      .++-+.++++.. ..++.+...++.++++.......+.....++.....+..|..+|+++++..+-..+-..+.    |.
T Consensus       337 s~~~~gll~~m~-~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl  415 (511)
T TIGR00806       337 SAIQAGLVFWMS-QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGL  415 (511)
T ss_pred             HHHHHHHhhhhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEccccc
Confidence            333333333332 2445566667777777777766666777777888888889999999987765544444332    22


Q ss_pred             ---HhcccCcchHHHHHHHHHHHHHHH
Q 009409          494 ---LLDSTHSWSMSLFAPSIFFYLTGT  517 (535)
Q Consensus       494 ---l~~~~g~~~~~~~~~~~~~~~~~~  517 (535)
                         +.+.+--|..-|.+++++.++..+
T Consensus       416 ~l~i~~Qf~vY~~yf~~~~~i~~~~~~  442 (511)
T TIGR00806       416 GLQVRKQFRIYSVYFLVLSIICFFGAG  442 (511)
T ss_pred             CCCceeEEEehhhHHHHHHHHHHHHHH
Confidence               111121345455555554444444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.94  E-value=6.8e-24  Score=209.60  Aligned_cols=375  Identities=15%  Similarity=0.136  Sum_probs=272.8

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccC-CchhhHHHHHHHHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-GRKVLQTGVLIWSLATALLP  197 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~~~~~  197 (535)
                      ++..+|+.+.....+.|+++.+.++.|+|..|+|.+.++..+...+.++++|.++||.+ +|+++.+..++.++..... 
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~-   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL-   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH-
Confidence            34566677777788889999999999999999999999999999999999999999986 5677767666655555444 


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhH-HHhcccc---chhHHHH
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA-PPIIENL---GWESVFY  273 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~-~~l~~~~---gw~~~f~  273 (535)
                      ...++++.+++..++..+......|...++..+..+  ++++..|-....+++|.+++.+.. +.+....   +..+.++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            456667888888888888888888999988888775  566778888888888888886552 3333332   2345566


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhH
Q 009409          274 IFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (535)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (535)
                      +.++..++.....+.+|+.++++..+...++.                   ......+++|+|++..+.+..++......
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~~-------------------~~~~~~~llk~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKRSAKESVKKL-------------------LGLDALKLLKNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCcccc-------------------cchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            66665555555555666654222111111000                   00112478999999999999999998888


Q ss_pred             HHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009409          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG  433 (535)
Q Consensus       354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (535)
                      ...++.+.|+++.-|.+....+.++++..+.+++.-...+++..|+|.+         .++.++.+..++=..++....+
T Consensus       225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~~~  295 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYFSD  295 (400)
T ss_pred             HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999865447888888888898999999999999999999754         4455566666665555555433


Q ss_pred             CcHHHHHH----HHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHh-hhhhhhHHHHHHHHHhcccCc-----chH
Q 009409          434 LPHWEIVG----ILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTV-GAVPGIVGVALTGYLLDSTHS-----WSM  503 (535)
Q Consensus       434 ~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~lg~~igp~i~G~l~~~~g~-----~~~  503 (535)
                      +.+.....    ..+.|+.++.+......++.+..|++.|+++.|+++.. .++|..+|..++|+++|.+|.     +..
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA  375 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence            33332222    24588888888899999999999999999999998875 579999999999999998752     234


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc
Q 009409          504 SLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      .+.+.+++.++..++.++.+|
T Consensus       376 ~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            445555544444444444444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.94  E-value=1.4e-23  Score=203.07  Aligned_cols=392  Identities=13%  Similarity=0.069  Sum_probs=271.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhc-ccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (535)
                      |++....+...+++.++..++..++.|...+ +.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+..
T Consensus         5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL   84 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence            3455666677777788888899999888554 599999999999999999999999999999999997776554433221


Q ss_pred             H--HHHHH----Hhhhhh-hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc
Q 009409          191 L--ATALL----PLLAGF-MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (535)
Q Consensus       191 ~--~~~~~----~~~~~~-~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (535)
                      +  +....    .+...| +...+++.+..|++.....|...+++.++.  ++.+.-.|-..+.+++|.+++..++|.+.
T Consensus        85 ~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~  162 (412)
T PF01306_consen   85 LLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILF  162 (412)
T ss_dssp             HTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence            1  11111    111222 223344444556666666677777766654  46678889999999999999999999998


Q ss_pred             cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHH
Q 009409          264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (535)
Q Consensus       264 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (535)
                      + .+-+..||+..+.+++..++.+..+++.+++....+....+              +++.+.....+++|+|++|.+.+
T Consensus       163 ~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~k~~~fw~~~l  227 (412)
T PF01306_consen  163 N-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAK--------------KDKVSLKDVLSLFKMRNFWFFVL  227 (412)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS--------------------HHHHHHHTTSHHHHHHHH
T ss_pred             e-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccC--------------CCCCcHHHHHHHhcchhHHHHHH
Confidence            6 46678888877666555555444443322221111111000              00000112368899999999998


Q ss_pred             HHHHHhhhhHHHHHhhHHHHHHHh---CCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 009409          344 AHFCGSWGHYTCLSWLPTYFSEEL---SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (535)
Q Consensus       344 ~~~~~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  420 (535)
                      ........++.+....|.|+...+   +.+....|.+.+...+..++...+..++.+|+|.|         ....++..+
T Consensus       228 ~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i  298 (412)
T PF01306_consen  228 FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHH
Confidence            888888888888778888887533   33456688899999999999999999999999965         344444555


Q ss_pred             HHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHH-HHhhhhhhhHHHHHHHHHhcccC
Q 009409          421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGIT-NTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      +.+=...... .++++++.+.-.+.++-.........-++.+.++++..++...+. +...++|.++.+.++|.++|+.|
T Consensus       299 ~~iRi~~~~~-~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G  377 (412)
T PF01306_consen  299 MAIRIIGSGF-ATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG  377 (412)
T ss_dssp             HHHHHHHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence            5555444443 445666777778888888888888888899999999999999995 67789999999999999999995


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 009409          500 SWSMSLFAPSIFFYLTGTIVWLAFASSKPQNF  531 (535)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (535)
                       +...|++++.+.+...++..+..++.|++..
T Consensus       378 -~~~tylimg~iv~~~~li~~f~l~~~~~~~~  408 (412)
T PF01306_consen  378 -FQHTYLIMGLIVLPFTLISAFTLKKDKKQIV  408 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHS--SSSTTC
T ss_pred             -cHHHHHHHHHHHHHHHHHheeeecCCCcccc
Confidence             8888888888777777777777776666543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=197.65  Aligned_cols=355  Identities=15%  Similarity=0.084  Sum_probs=232.6

Q ss_pred             hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCC
Q 009409          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGV  219 (535)
Q Consensus       140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~  219 (535)
                      ..+..+.+..-.|.+.+.|.+...+.++.+|.++||+|||++++++.+..++..++. ..+.++..+++.|++.|+..+-
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgn  137 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGN  137 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCc
Confidence            333444566678999999999999999999999999999999999999988877776 4788876666669999999876


Q ss_pred             chhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc---ccchhHHHH---HHHHHHHH-HHHHhhhcccC
Q 009409          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---NLGWESVFY---IFGLLGIA-WFSGFKILQEG  292 (535)
Q Consensus       220 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~gw~~~f~---~~~~~~~~-~~~~~~~~~~~  292 (535)
                      . ....++++|++++++|+++++.+...+++|.++||.+||++.+   ..|--+.++   +..++... ...+.+++||+
T Consensus       138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            6 5678999999999999999999999999999999999999987   233222222   22222222 44566777777


Q ss_pred             CCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHH-------HHHHHHHHHHhhhhHHHHHhhHHHHHH
Q 009409          293 ETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV-------WAMIYAHFCGSWGHYTCLSWLPTYFSE  365 (535)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~p~~l~~  365 (535)
                      -+.+++. ++....   .+...+. ++ ..+.++..-...+||++.       ..+.+..+++...+-.+.++.+.+..+
T Consensus       217 L~~rk~~-~~~~~~---~~~~~~~-~~-~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~  290 (451)
T KOG2615|consen  217 LPLRKRN-DEHSTL---QEAADDR-LA-LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHG  290 (451)
T ss_pred             ccchhhc-ccccch---hhhhhhh-hh-hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcC
Confidence            5544333 110000   0000000 00 001111111123333322       223344444444444445555555567


Q ss_pred             HhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 009409          366 ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTA  445 (535)
Q Consensus       366 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (535)
                      .+|+++.+.|-+.+..++.+.+.+....+..+|.+..  .+   ......+......  +++... ...+..+..+..+.
T Consensus       291 rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~--~~---a~l~~~l~~~vP~--~llls~-~~~~~~l~~~s~l~  362 (451)
T KOG2615|consen  291 RFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN--IK---AVLLFSLLLIVPA--FLLLSL-ARTPVVLYLGSTLK  362 (451)
T ss_pred             ccCCChhhheeeeehhhHHHHHHHHhccccccccccc--hh---hHHHHHHHHHHHH--HHHHhc-cccchhhhHHHHHH
Confidence            7899999999999999998888888877777776421  00   1111112122122  122222 23345556666666


Q ss_pred             HHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHH
Q 009409          446 GLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSI  510 (535)
Q Consensus       446 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~  510 (535)
                      .+..+...+.....+....++++||+++|+..+.+.++-++||.+.|.+....-.-...+...+.
T Consensus       363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~  427 (451)
T KOG2615|consen  363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGA  427 (451)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHH
Confidence            66666666666666777788899999999999999999999999999988765333334433333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.93  E-value=6.5e-23  Score=210.42  Aligned_cols=397  Identities=12%  Similarity=0.116  Sum_probs=245.4

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~  193 (535)
                      +..+++..+...+..+.+.+.++. +.+++|++..+.+++.+.+........+++|+++|| +|||+++.++.++++++.
T Consensus        23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            334445555566666666666665 568899999999999888876666667899999999 599999999999999888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccc--hhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      .++....++.+.+++.|+++|++.+...+...+++.+++|+++  |..++++++.+.++|.++||.+++++.++.|||+.
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~  182 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA  182 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence            7775433455667788999999999999999999999997543  45688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh----hcccCCCCCCCCCCcchhhhh----------------hhhhhhhh----------HHHhc
Q 009409          272 FYIFGLLGIAWFSGFK----ILQEGETSNGATLAPRSNYIN----------------MKKSLSAS----------LEEMG  321 (535)
Q Consensus       272 f~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~----------~~~~~  321 (535)
                      |++.++..++..+.+.    .+++..+....++.+......                ........          .....
T Consensus       183 F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (500)
T PRK09584        183 FALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGK  262 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            9998765444332222    222221111111111111000                00000000          00000


Q ss_pred             cCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHH--HhCCCh------hhHHHHHhhHHHHHHHHHHHHH
Q 009409          322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE--ELSLNL------TEAAWVSILPPLASVLVTSIAA  393 (535)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~--~~g~s~------~~~g~~~~~~~~~~~~~~~~~g  393 (535)
                      ..   ...++.-++| .+.. +..++....++......|.++..  ..+.+.      ...+.+.++..+..++..++.+
T Consensus       263 ~~---~~~~~~~~~~-~~~~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~  337 (500)
T PRK09584        263 EA---FAMKGAARRK-MIVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILA  337 (500)
T ss_pred             HH---hhcCHHHHHH-HHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHH
Confidence            00   0001111222 2222 22334445556666666766543  112221      1244556667777777777777


Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC--------CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccC
Q 009409          394 QFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG--------LPHWEIVGILTAGLALSSFALSGLYCTHQDIS  465 (535)
Q Consensus       394 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  465 (535)
                      ++-+|.++|..     ....+.+++++.++++........        +.++.+...++.+++.....+.....+.+..|
T Consensus       338 ~~~~~l~~r~~-----~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP  412 (500)
T PRK09584        338 AIYNKMGDRLP-----MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP  412 (500)
T ss_pred             HHHHHhCcCCC-----cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc
Confidence            77777655421     122334444444444443222111        23467777888899999889999999999899


Q ss_pred             CcchhHHHHHHHHhhhhhhhHHHHHHHHHhc---------ccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          466 PEYASILLGITNTVGAVPGIVGVALTGYLLD---------STHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       466 ~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      ++.||+++|+......+|..++..+.+....         ..+.+...|...++..++.+++.+..
T Consensus       413 ~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~  478 (500)
T PRK09584        413 QRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT  478 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998776665655555555542211         11225677776666555454444443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=7.8e-23  Score=187.54  Aligned_cols=401  Identities=15%  Similarity=0.137  Sum_probs=269.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      +..............+-....+-..|.+....|.+..+..++......+..++...||.++|++|||+.+.+..+..++.
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~  156 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF  156 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH
Confidence            45555555555555555555566677788889999999999999999999999999999999999999999998887777


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      ..+- ..++++..+++.|.+.|+|.|+ .|...++-.+..|..+|...+-.. ..+.+|.++...++-....++||||..
T Consensus       157 ~~is-~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l  233 (528)
T KOG0253|consen  157 GVIS-GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLL  233 (528)
T ss_pred             HHhh-cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            7665 4788889999999999999999 888899999999988888877776 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhh------------------hhhhHHH-----hcc---CCCC
Q 009409          273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKS------------------LSASLEE-----MGE---SLKD  326 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-----~~~---~~~~  326 (535)
                      ...+....+...+.++++|.++..-.+..+.+.....++.                  .+.+.++     .+.   +...
T Consensus       234 ~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~r  313 (528)
T KOG0253|consen  234 FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVR  313 (528)
T ss_pred             HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccc
Confidence            9988777777888888888876543333222211110000                  0000000     000   0111


Q ss_pred             CcHHHhhhc---HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH-----------------hC--CChhhHHHHHhhHHHH
Q 009409          327 VPWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-----------------LS--LNLTEAAWVSILPPLA  384 (535)
Q Consensus       327 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~-----------------~g--~s~~~~g~~~~~~~~~  384 (535)
                      ....+++..   +..+.+...+|...+.+|+..-.....++..                 .+  .+...--.=..+..+.
T Consensus       314 g~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitsla  393 (528)
T KOG0253|consen  314 GGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLA  393 (528)
T ss_pred             cchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHh
Confidence            122333321   3334445555666666666544433333321                 11  1111111123455678


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 009409          385 SVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDI  464 (535)
Q Consensus       385 ~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  464 (535)
                      ...|.++.+++.||+|||         ..+...++..+++.++.....+...... ..+..-++..+.+.....+..+.+
T Consensus       394 efPGlLIt~~iverlGRK---------kTMal~l~~f~iflfll~~c~~rn~~tv-llf~arafisg~fqvaYvYtPEVy  463 (528)
T KOG0253|consen  394 EFPGLLITGVIVERLGRK---------KTMALSLILFGIFLFLLTTCKTRNAYTV-LLFTARAFISGAFQVAYVYTPEVY  463 (528)
T ss_pred             hCCchhHHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHhcCcchhHH-HHHHHHHHHhchheEEEEecCccc
Confidence            889999999999999964         4555666666665555544444333222 223333333444445555667778


Q ss_pred             CCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 009409          465 SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQ  529 (535)
Q Consensus       465 ~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (535)
                      |...|+++.|..+.+..+|+++.|.++ ...+..  ...+..+.+++++++++++.++.-++|.+
T Consensus       464 PTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s--~sl~i~vy~~~~ilagIavcffPiEtkGR  525 (528)
T KOG0253|consen  464 PTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS--TSLPIFVYGALFILAGIAVCFFPIETKGR  525 (528)
T ss_pred             chhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc--eeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence            889999999999999999999999998 444442  33444445555666666666665555544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=4.9e-23  Score=208.28  Aligned_cols=365  Identities=16%  Similarity=0.183  Sum_probs=253.1

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (535)
                      ++.....++.....+..++.+.+++|- .....|+.+.+.++..+..++.|+++|.+|||.+++.+.++..++.++.+ .
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-t  127 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-T  127 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-c
Confidence            333333445555556677889999995 46778999999999999999999999999999999999999999998774 8


Q ss_pred             hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHH
Q 009409          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (535)
Q Consensus       200 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~  279 (535)
                      +++...++++..+.|+|.|... .....++|..|.+.|+...++......+....+|.++..+..+.+|||.|++.+++.
T Consensus       128 A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~  206 (599)
T PF06609_consen  128 AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS  206 (599)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence            8888999999999999976665 456668999999999888887777666666678888887777789999999998876


Q ss_pred             HHHHHHhhh--cccCCCCCCCCCCcchhhhhhh--------------------------hhhhhhH--------------
Q 009409          280 IAWFSGFKI--LQEGETSNGATLAPRSNYINMK--------------------------KSLSASL--------------  317 (535)
Q Consensus       280 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~--------------  317 (535)
                      .+.++..++  .|++.++.+.+...+.+...+-                          ..|.+..              
T Consensus       207 ~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~  286 (599)
T PF06609_consen  207 GIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVA  286 (599)
T ss_pred             HHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHH
Confidence            554433322  2222221111111111111100                          0011110              


Q ss_pred             ---HHhccC--CCCCcHHHhhhc-HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChh---hHHHHHhhHHHHHHHH
Q 009409          318 ---EEMGES--LKDVPWKAIFRS-KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT---EAAWVSILPPLASVLV  388 (535)
Q Consensus       318 ---~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~---~~g~~~~~~~~~~~~~  388 (535)
                         -|....  ..-.| .+++|+ |.+...++..++....++....+.|......++-++.   ..++.....+++..+|
T Consensus       287 F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g  365 (599)
T PF06609_consen  287 FVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAG  365 (599)
T ss_pred             HHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHH
Confidence               010001  11122 467777 5566666777888888888889999998877777653   5677778888888899


Q ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH-HHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc
Q 009409          389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV-CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE  467 (535)
Q Consensus       389 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  467 (535)
                      ..+.+.+..++++-        |+.+..+.+.... +..+.....++....+...++.+++.+..........+-..|++
T Consensus       366 ~~i~g~l~~~ir~~--------Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~  437 (599)
T PF06609_consen  366 AVILGLLFSKIRHI--------KWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE  437 (599)
T ss_pred             HHHHHHHHHHccch--------hHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch
Confidence            99999999887532        2333333333332 22333344455445555566677777766666665565668999


Q ss_pred             chhHHHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          468 YASILLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       468 ~~g~~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      +.|++.|+..+++.+|+.+|..+..-++.
T Consensus       438 ~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  438 DIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999998876654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=4.7e-23  Score=203.20  Aligned_cols=368  Identities=15%  Similarity=0.133  Sum_probs=261.2

Q ss_pred             hHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHhhhccCCchhhHHHHhh
Q 009409          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (535)
Q Consensus       152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~  229 (535)
                      +.+.+++.+|.++|++..++++||+|||..+.++.++..++.++..  ...+++.+++++|++.|+..+........++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            5677899999999999999999999999999988887666655443  34577899999999999999999999999999


Q ss_pred             hcccccchhhHHHHHHHhhhhHHHHHhhhHH-Hhc-cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhh
Q 009409          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAP-PII-ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI  307 (535)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~-~l~-~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (535)
                      |..|++.||..-.....+..+|..++..++. .+. +...|++.+.+..+.+++.++...++||+|+.--.++.++++..
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~  222 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEAR  222 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHH
Confidence            9999999999999999999999999966653 333 34569999999999999999999999999876443222222211


Q ss_pred             ---hhhhhhh----------hhHHHh-ccCCCCCcHHHhhhcHHHHHHH-----HHHHHHhhhhHHHHHhhHHHHHHHhC
Q 009409          308 ---NMKKSLS----------ASLEEM-GESLKDVPWKAIFRSKAVWAMI-----YAHFCGSWGHYTCLSWLPTYFSEELS  368 (535)
Q Consensus       308 ---~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~p~~l~~~~g  368 (535)
                         +.-+...          .+.++. .++.+..++.++++++....-.     +...-...+.+.+..|...+++ ..|
T Consensus       223 ~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~-~aG  301 (485)
T KOG0569|consen  223 KALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK-TAG  301 (485)
T ss_pred             HHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH-HcC
Confidence               1111110          011111 1122556788999886655432     2222233344556666666665 469


Q ss_pred             CChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh---hcCCC--cHH---HHH
Q 009409          369 LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS---IDLGL--PHW---EIV  440 (535)
Q Consensus       369 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~---~~~  440 (535)
                      ++..++.+.....++...+..+++.++.||+|||         .+...+...+.+..+++.   ...+.  .+.   .++
T Consensus       302 ~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~  372 (485)
T KOG0569|consen  302 FTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIA  372 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999999999999999999999975         222333332222222111   11111  111   122


Q ss_pred             HHHHHHHHHhh-hhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhh
Q 009409          441 GILTAGLALSS-FALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIV  519 (535)
Q Consensus       441 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  519 (535)
                      +.+...++++. ..+.......+.++++.|+.+.++..++..+..++-...+-.+.+..|.  ..|+...+.+++..+..
T Consensus       373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~  450 (485)
T KOG0569|consen  373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYL  450 (485)
T ss_pred             HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHH
Confidence            33333333332 2444555567779999999999999999999999999999999999885  45666667777778888


Q ss_pred             hhhccCCCCCCC
Q 009409          520 WLAFASSKPQNF  531 (535)
Q Consensus       520 ~~~~~~~~~~~~  531 (535)
                      +...+++|.+..
T Consensus       451 ~~~lPETkgr~~  462 (485)
T KOG0569|consen  451 YRYLPETKGRTP  462 (485)
T ss_pred             HHhCcccCCCCH
Confidence            888888876543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7.3e-25  Score=193.59  Aligned_cols=362  Identities=14%  Similarity=0.126  Sum_probs=252.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSL  191 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~  191 (535)
                      ...+..+|+..|-+++.....+....++.++.+++.++..++.++|.....+.++++|++.|| +|.|..-++-+....+
T Consensus        43 ~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~  122 (459)
T KOG4686|consen   43 FMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL  122 (459)
T ss_pred             HHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence            344555566666677777777777788899999999999999999999999999999999997 6877666555555566


Q ss_pred             HHHHHHh--hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchh
Q 009409          192 ATALLPL--LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (535)
Q Consensus       192 ~~~~~~~--~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (535)
                      +.++++.  ..+.+|+++.+||+.|+|.-......+.+...||+.+|.+.++|+.....-+|+.+--.+.+++.+..+--
T Consensus       123 GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~  202 (459)
T KOG4686|consen  123 GQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRM  202 (459)
T ss_pred             HHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHh
Confidence            6655432  45778999999999999998888899999999999999999999999999999998888888877653210


Q ss_pred             ------H---HHHHHHHH-HHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhh-hcHHH
Q 009409          270 ------S---VFYIFGLL-GIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIF-RSKAV  338 (535)
Q Consensus       270 ------~---~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  338 (535)
                            .   .....+.. +...++....+--.+++..+.       ..+++...      .+..+   +.+.. -.|.+
T Consensus       203 ~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAeri-------lh~e~g~~------Ge~pk---Ltdv~~f~ppf  266 (459)
T KOG4686|consen  203 FPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERI-------LHLEEGFL------GEEPK---LTDVNTFYPPF  266 (459)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-------HhhhcCcc------cCCcc---cccccccCccH
Confidence                  0   01111111 111111111111000000000       00000000      00000   01111 24789


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH-HH
Q 009409          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT-IA  417 (535)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~-~~  417 (535)
                      |.+.++.+++..+.+.+...-|.++++++|+|+..++.+.+.....+.+.+++.|.++||.|++-.       ++.. ..
T Consensus       267 w~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-------wv~~a~~  339 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-------WVASACI  339 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-------hHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999997611       1111 11


Q ss_pred             HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc
Q 009409          418 FLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS  497 (535)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  497 (535)
                      ..+.+-..+.  +..-++   ...+.++|+......-..-..+...+|+++.|++.|+.+.+.++|-.+.|.++|.+.|.
T Consensus       340 ~tl~~H~~l~--Ft~lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  340 LTLLGHSGLF--FTFLSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HHHHHhhhHH--hhhccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            1111112221  111122   24455667666655554555566778999999999999999999999999999999998


Q ss_pred             cCcch
Q 009409          498 THSWS  502 (535)
Q Consensus       498 ~g~~~  502 (535)
                      -|+|.
T Consensus       415 ~g~y~  419 (459)
T KOG4686|consen  415 DGSYD  419 (459)
T ss_pred             CCchh
Confidence            87653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=5e-23  Score=214.06  Aligned_cols=412  Identities=15%  Similarity=0.084  Sum_probs=260.9

Q ss_pred             CCcccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhh
Q 009409           93 GTEEVGRASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWL  172 (535)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l  172 (535)
                      .+.++.++.+|+.+++.    ......+..........+..++..+  .+.++.+.....+..+++.+|..+|++++|++
T Consensus        68 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~l  141 (521)
T KOG0255|consen   68 PTLDPANPLNWPSWKKW----LLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPL  141 (521)
T ss_pred             CccCcCCcccccccccc----ccccccccceeEecCCCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheeh
Confidence            44555666666665532    2111222222222223333333333  46677788899999999999999999999999


Q ss_pred             hcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHH
Q 009409          173 AKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (535)
Q Consensus       173 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  252 (535)
                      +||+|||++++.+.++..++.++. .++++++.+++.|++.|++.++.......+++|++++++|+.+..+ ......++
T Consensus       142 sD~~GRk~~~~~~~~~~~i~~~~~-a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~  219 (521)
T KOG0255|consen  142 SDRFGRKPVLLVSLLLFIIFGILT-AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGG  219 (521)
T ss_pred             HhhcccHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHH
Confidence            999999999999999999999666 5889999999999999999999999999999999999999999999 88888999


Q ss_pred             HHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhh------hhhh---H------
Q 009409          253 VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKS------LSAS---L------  317 (535)
Q Consensus       253 ~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~------  317 (535)
                      .+++..++++..  +|||.+++..+..++.++..++.+|.++....+.+.++.....++.      ....   .      
T Consensus       220 ~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~  297 (521)
T KOG0255|consen  220 LMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLL  297 (521)
T ss_pred             HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHh
Confidence            999999999887  8999999999998877777555557665433222222111111110      0000   0      


Q ss_pred             HH--hccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHH
Q 009409          318 EE--MGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQF  395 (535)
Q Consensus       318 ~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l  395 (535)
                      +.  .....+...+..+++.|++....+...+.... +...++.-.+....+|.+...   ...+.+.....+....+..
T Consensus       298 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~-~~~~y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~  373 (521)
T KOG0255|consen  298 RPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV-FSLVYYGLSLNVSGLGGNIYL---NFTLSGLVELPAYFRNGLL  373 (521)
T ss_pred             hHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH-HhHHHHhhhhhhhhcCchHHH---HHHHHHHHHhhHHHHHHHH
Confidence            00  00111224467778877544443333333322 222222222233344544433   3344444677777778899


Q ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcH--HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHH
Q 009409          396 ADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPH--WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILL  473 (535)
Q Consensus       396 ~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  473 (535)
                      .|++||         +...........++++..........  .......+..++.+...........+.+|...|+.+.
T Consensus       374 ~~~~gR---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~  444 (521)
T KOG0255|consen  374 LPEFGR---------RPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAV  444 (521)
T ss_pred             HHHhCc---------HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            999864         34445555555555554444333222  2222222333333333444456667778999999999


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 009409          474 GITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQ  529 (535)
Q Consensus       474 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (535)
                      |..+....+|.+++|.+.-......  ....+.+.+.+..+.+.+..+..++++.+
T Consensus       445 ~~~~~~~~~~~i~ap~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  445 GAISAAARLGSILAPLFPLLLRQMF--PLLGLILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            9999999999999998876554432  22222223444445555554555544443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=207.86  Aligned_cols=401  Identities=15%  Similarity=0.126  Sum_probs=255.0

Q ss_pred             HHHHHHHHHhh--hhhhHhhhhhhhccc-----CCCc--cchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHH
Q 009409          119 TSLAFVICNMD--KVNLSVAIIPMSHRF-----GWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (535)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~~~~~~~~~-----g~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (535)
                      ..+..+..+.+  ....++....+.++.     ..+.  .+.+++.++..++..++++++|+++|++|||+.++++.+++
T Consensus        50 ~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~  129 (513)
T KOG0254|consen   50 AALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF  129 (513)
T ss_pred             HHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33444444443  344555555555532     2222  34589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc-cch
Q 009409          190 SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LGW  268 (535)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~gw  268 (535)
                      .++.++.+ +++++.+++++|++.|+|.|........+++|..|++.||...+.......+|..++..++....+. .+|
T Consensus       130 ~iG~ii~~-~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~W  208 (513)
T KOG0254|consen  130 LIGAIIIA-LAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGW  208 (513)
T ss_pred             HHHHHHHH-HhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccH
Confidence            99998875 7788999999999999999999999999999999999999999999999999999995555444332 489


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhh--hhhh---hhh--hHH--------HhccCCCCCcHHHhh
Q 009409          269 ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYIN--MKKS---LSA--SLE--------EMGESLKDVPWKAIF  333 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~--~~~--------~~~~~~~~~~~~~~~  333 (535)
                      |..+.+..+.+++..+..+++||+++.--+.....+....  ..+.   +..  +.+        +......+..+++++
T Consensus       209 r~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  288 (513)
T KOG0254|consen  209 RIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELF  288 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhc
Confidence            9999999998888877777788766543332222111110  0000   000  000        000011111233333


Q ss_pred             h----cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhH
Q 009409          334 R----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV  409 (535)
Q Consensus       334 ~----~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  409 (535)
                      +    ++.+....+..+....+.....+|.+.+++. .|.+... .......++..+++..+...+.||+|||       
T Consensus       289 ~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr-------  359 (513)
T KOG0254|consen  289 SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR-------  359 (513)
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH-------
Confidence            3    3344445566666666667778888988864 4666433 4455666777788888889999999864       


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhc----C-------CCcHHHHHHHHHHHHHHhhhhhhhh-hhhhhccCCcchhHHHHHHH
Q 009409          410 RKICQTIAFLSPAVCMTLSSID----L-------GLPHWEIVGILTAGLALSSFALSGL-YCTHQDISPEYASILLGITN  477 (535)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~  477 (535)
                        .+...+...+.++..+....    .       ....+.++..++.-..+.....+.. ....+.+|.+.|+.+.++..
T Consensus       360 --~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~  437 (513)
T KOG0254|consen  360 --KLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV  437 (513)
T ss_pred             --HHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence              33333333333333322211    0       1112222222222222222222222 24556688899999999999


Q ss_pred             HhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH-hhhhhccCCCCCCCC
Q 009409          478 TVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGT-IVWLAFASSKPQNFS  532 (535)
Q Consensus       478 ~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  532 (535)
                      .+..+...+-....-.+.+..+ ....|...+....+... .++...+++|.++.+
T Consensus       438 ~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sle  492 (513)
T KOG0254|consen  438 AVNWLWNFLISFFFPFITEALG-IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLE  492 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHheEEcccCCCCcHH
Confidence            9888877776666655655543 23344444444444444 566666777665543

>PTZ00207 hypothetical protein; Provisional

Probab=99.91  E-value=1.5e-21  Score=198.99  Aligned_cols=388  Identities=12%  Similarity=0.067  Sum_probs=266.3

Q ss_pred             hhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhh-----hh
Q 009409          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----GF  202 (535)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~  202 (535)
                      ...+.++.+.|.+.+++|+|..+.+++.++. ..+.++++++|++.||+|+|+++.++.++++++.++.++..     .+
T Consensus        41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s  119 (591)
T PTZ00207         41 SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS  119 (591)
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            3445677778889999999999999998874 45567788899999999999999999999999998876531     46


Q ss_pred             hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHH
Q 009409          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (535)
Q Consensus       203 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  282 (535)
                      ++.+++.|++.|+|.+...+.....+.+++| ++||+++|+...+.++|+++.+.+...+.. .+|++.|++.+++.++.
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999997 889999999999999999864444443433 46899999988887665


Q ss_pred             HHHhhhcccCCCCCC---CC--CCcchhhhhh----------------------------------------h--h----
Q 009409          283 FSGFKILQEGETSNG---AT--LAPRSNYINM----------------------------------------K--K----  311 (535)
Q Consensus       283 ~~~~~~~~~~~~~~~---~~--~~~~~~~~~~----------------------------------------~--~----  311 (535)
                      .++...+.++++...   ++  .+++++..++                                        +  +    
T Consensus       198 ~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~  277 (591)
T PTZ00207        198 GILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKV  277 (591)
T ss_pred             HHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            544444333222111   00  0111110000                                        0  0    


Q ss_pred             -----hh---------------------h-h-hH------H--------Hh---ccCCC------CCcHHHhhhcHHHHH
Q 009409          312 -----SL---------------------S-A-SL------E--------EM---GESLK------DVPWKAIFRSKAVWA  340 (535)
Q Consensus       312 -----~~---------------------~-~-~~------~--------~~---~~~~~------~~~~~~~~~~~~~~~  340 (535)
                           ..                     . + +.      +        +.   ....+      ..++.+.+++..+|.
T Consensus       278 ~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wl  357 (591)
T PTZ00207        278 GFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWC  357 (591)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHH
Confidence                 00                     0 0 00      0        00   00001      125677888999999


Q ss_pred             HHHHHHHHhhhhHHHHHhhHHHHHHHh-CCChhh--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 009409          341 MIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLTE--AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIA  417 (535)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~--~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  417 (535)
                      +.+..++.......+...+.+..+ .+ |.+...  ..++.++.++++.+|++..|.+.....+|+...+..|...+.+.
T Consensus       358 l~~~~~cg~g~gl~~~~N~~qI~~-sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~  436 (591)
T PTZ00207        358 LLWSIFCCVGAHFVIIFNARFIYT-ALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIP  436 (591)
T ss_pred             HHHHHHHhhCchheeeecHHHHHH-HhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            999999998888888888888775 45 763322  33378999999999999999998444333322111233333333


Q ss_pred             HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHH-HHHHHHHhc
Q 009409          418 FLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVG-VALTGYLLD  496 (535)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig-p~i~G~l~~  496 (535)
                      .+ +.+..+++....+. ..+.+..++.|++.+.........+.+.+. ++-|+-..+.....-+|..+- -.++|.++|
T Consensus       437 ~~-~~~~~lll~~~~p~-~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd  513 (591)
T PTZ00207        437 SV-CIITMLTLFLTLPK-AALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYT  513 (591)
T ss_pred             HH-HHHHHHHHHHHCCc-cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33 33333333332221 456778888899988877777777777777 888998888888888887776 568899997


Q ss_pred             ccC----c--------chHHHHHHHHHHHHHHHhhhhh
Q 009409          497 STH----S--------WSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       497 ~~g----~--------~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      +-.    +        +...|++++++.+++.++....
T Consensus       514 ~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        514 QQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             HHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence            531    1        5677888777777766665544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.91  E-value=1.2e-20  Score=189.90  Aligned_cols=355  Identities=16%  Similarity=0.113  Sum_probs=258.5

Q ss_pred             hhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH-HHHHHHhh-hhhhhHHHHHHHHhhhccCCchhhHHHHh
Q 009409          151 AGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL-ATALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLI  228 (535)
Q Consensus       151 ~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~G~~~~~~~~~~~~~~  228 (535)
                      .++..++..+..++..|+.|.++|+-|+||.++....+.++ ++.++.+. .++++...++.++.-++.+.......+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888888999999999999999987777665554443 44444333 34445555556666677778888889999


Q ss_pred             hhcccccch--------------------------hhHHHHHHHhhhhHHHHHhhhHHHhccc--------cchhHHHHH
Q 009409          229 ARSIPLEER--------------------------SRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWESVFYI  274 (535)
Q Consensus       229 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gw~~~f~~  274 (535)
                      .+..+++++                          ++..+.-.+.+++|+++.-++.-.+...        .+.|..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999988888                          9999999999999999888776655321        235888888


Q ss_pred             HHHHHHHHHHH-hhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhH
Q 009409          275 FGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (535)
Q Consensus       275 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (535)
                      .++..++..+. ++++|+.++.+..+.....    .+..+++-         ...++++.|.|.+..++++.+++.-+..
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~----~~~g~~~l---------~~t~k~~~~~~~~~~fLia~~l~~dg~~  298 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSY----LRFGFKRL---------WRTFKEIRKLRQLFLFLIAYFLYSDGVN  298 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCcchhH----HHHHHHHH---------HHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            88876655444 4444544332211111110    00011000         1124677788999999999999999999


Q ss_pred             HHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh----
Q 009409          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS----  429 (535)
Q Consensus       354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  429 (535)
                      .+......|.++.+|++..+...+.....+.+++|.++.+++.||+|.|..      +.+.........+.+....    
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~------~~l~~~l~~~~~i~~~g~~G~~~  372 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK------RTLLISLILWIIIPLYGLFGFWP  372 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999987511      1222221111122211111    


Q ss_pred             --hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHH
Q 009409          430 --IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFA  507 (535)
Q Consensus       430 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~  507 (535)
                        ....+.+...+..++.|++.+........+..+..|+++.+..+|+++..+...+.+||.+.|.+.+.+|+.+..+..
T Consensus       373 ~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~  452 (477)
T PF11700_consen  373 SFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF  452 (477)
T ss_pred             cccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence              113445556666678899999999999999999999999999999999999999999999999999999989999988


Q ss_pred             HHHHHHHHHHhhhhhcc
Q 009409          508 PSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       508 ~~~~~~~~~~~~~~~~~  524 (535)
                      ..++++++.++++....
T Consensus       453 l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  453 LLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            77766666665544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.91  E-value=7.5e-21  Score=190.10  Aligned_cols=391  Identities=12%  Similarity=0.098  Sum_probs=258.8

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhc----ccCCchhhHHH-HHHHHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQTG-VLIWSL  191 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~~  191 (535)
                      +.++...+-..+......+.++.+.+++|++....+++..+..+...+.+++.|+++|    |+|||+.++.+ .....+
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~   86 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF   86 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence            3445555556677778888888888999999999999999999999999999999999    59999999876 444444


Q ss_pred             HHHHHHhhhhhh-----------------hHHHHHHHHhhhccCCchhhHHHHhhhcccccch--hhHHHHHHHhhhhHH
Q 009409          192 ATALLPLLAGFM-----------------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEER--SRAVSFVFGGLSFGS  252 (535)
Q Consensus       192 ~~~~~~~~~~~~-----------------~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~  252 (535)
                      +.++++ .+++.                 ..++++-.+..++.....+...++++|..|+++|  +.+.++.+...++|.
T Consensus        87 ~l~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301        87 AVILIG-FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHH-hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            444443 33332                 1223333344557777888889999999998755  689999999999999


Q ss_pred             HHHhhhHHHh--cccc-------------chhHHHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhh
Q 009409          253 VAGLLLAPPI--IENL-------------GWESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSAS  316 (535)
Q Consensus       253 ~~g~~~~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (535)
                      ++|+.++++.  .+.+             +.|+.|++.+++.++..+ ..+..+|.+....++..+ ++..         
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~-~~~~---------  235 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN-SEAA---------  235 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-hhcc---------
Confidence            9999999875  2211             578999998877665544 444555544322111000 0000         


Q ss_pred             HHHhccCCCCCcHHHhhh-----cHHHHHHHHHHHHHhhhhHHHHHhhHHHHH-HHhCCChhh----------HHHHHhh
Q 009409          317 LEEMGESLKDVPWKAIFR-----SKAVWAMIYAHFCGSWGHYTCLSWLPTYFS-EELSLNLTE----------AAWVSIL  380 (535)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~-~~~g~s~~~----------~g~~~~~  380 (535)
                        +.++......++++++     .+.++.+++..++..++++.+..|...|+. +.|+-++..          ..+....
T Consensus       236 --~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~  313 (477)
T TIGR01301       236 --PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLML  313 (477)
T ss_pred             --cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHH
Confidence              0000000112333333     367889999999999999999999999986 455543211          1223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC----------------C----cHHHHH
Q 009409          381 PPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG----------------L----PHWEIV  440 (535)
Q Consensus       381 ~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~----~~~~~~  440 (535)
                      ..+...+.+++..++.+|+|.|        +..-.++.++.++++....+...                .    ....++
T Consensus       314 ~s~~~~i~s~~l~~l~~~~g~~--------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  385 (477)
T TIGR01301       314 NSVVLGITSIGMEKLCRGWGAG--------KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALI  385 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHH
Confidence            4555556666777888887642        12222332223333222211010                0    144455


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhccCC--cchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHH
Q 009409          441 GILTAGLALSSFALSGLYCTHQDISP--EYASILLGITNTVGAVPGIVGVALTGYLLDSTH-SWSMSLFAPSIFFYLTGT  517 (535)
Q Consensus       441 ~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g-~~~~~~~~~~~~~~~~~~  517 (535)
                      .+...|+..+.........+.+..++  +..|..+|+.|.+..+..++.....|.+.+..| +...++.+.++..+++++
T Consensus       386 ~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~  465 (477)
T TIGR01301       386 VFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGL  465 (477)
T ss_pred             HHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHH
Confidence            56667888777777777777777774  556999999999999999999999998777766 356667777777777777


Q ss_pred             hhhhhccCCCC
Q 009409          518 IVWLAFASSKP  528 (535)
Q Consensus       518 ~~~~~~~~~~~  528 (535)
                      +.+...+|.++
T Consensus       466 ~~~~~~~~~~~  476 (477)
T TIGR01301       466 LALILLPRPRV  476 (477)
T ss_pred             HHHHhCCCCCC
Confidence            77777766553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=2e-20  Score=187.80  Aligned_cols=395  Identities=13%  Similarity=0.084  Sum_probs=237.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc-CCchhhHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSL  191 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~  191 (535)
                      +-+..++...+...+..+.....+|. +.+++|++..+.+.+.+.+.....++++++|+++||+ |||++++++.++.++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l   88 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI   88 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence            44444555555566666667777776 4567899999999999999999999999999999999 999999999999888


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhccccc--chhhHHHHHHHhhhhHHHHHhhhHHHhccccchh
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWE  269 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~  269 (535)
                      +.+++.....+...+.+...+.++|.+...+...++++|.+|++  +|..++++.+...++|+.++|.+.+++.+..||+
T Consensus        89 g~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         89 GHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            87665422222223444444555666667777788999999875  6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCC---CCCCCcchhhhh---------------hh-hhhhhhHHH-----------
Q 009409          270 SVFYIFGLLGIAWFSGFKILQEGETSN---GATLAPRSNYIN---------------MK-KSLSASLEE-----------  319 (535)
Q Consensus       270 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~~-~~~~~~~~~-----------  319 (535)
                      +.|.+.++..++.++.++...+...+.   +++..++++...               .. .........           
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGL  248 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987665444333333222111110   011110000000               00 000000000           


Q ss_pred             -----hccCCCCCcHHHhhhcHH--HHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-----CCChhhHHHHHhhHHHHHHH
Q 009409          320 -----MGESLKDVPWKAIFRSKA--VWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-----SLNLTEAAWVSILPPLASVL  387 (535)
Q Consensus       320 -----~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~-----g~s~~~~g~~~~~~~~~~~~  387 (535)
                           ...  ++.  .+.-|+|.  +..+.+...+....+....+.+..|..+.-     |+. ....+..++..+..++
T Consensus       249 ~~~~~~~~--~~~--~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~  323 (493)
T PRK15462        249 GVLAKIYR--KAE--NQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVML  323 (493)
T ss_pred             HHHHHHHH--hcC--CHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHH
Confidence                 000  000  00012221  122223333333333444455555554432     322 1234556777777788


Q ss_pred             HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh--h---c---CCCcHHHHHHHHHHHHHHhhhhhhhhhh
Q 009409          388 VTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS--I---D---LGLPHWEIVGILTAGLALSSFALSGLYC  459 (535)
Q Consensus       388 ~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~  459 (535)
                      ..++.+++-.|..+++..+....|.  .++++..+++++...  .   .   ..+..|++...++..++--+..+.....
T Consensus       324 l~P~~a~lw~~l~~~~~~~s~~~Kf--a~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~  401 (493)
T PRK15462        324 CGVFLAWVVKESVAGNRTVRIWGKF--ALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQ  401 (493)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHH
Confidence            8888888777775443333323333  334443333332221  1   1   1245677777788888888889999998


Q ss_pred             hhhccCCcchhHHHHHHHHhh-hhhhhHHHHHHHHHhcc-----------cCcchHHHHHHHHHHHHH
Q 009409          460 THQDISPEYASILLGITNTVG-AVPGIVGVALTGYLLDS-----------THSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       460 ~~~~~~~~~~g~~~g~~~~~~-~lg~~igp~i~G~l~~~-----------~g~~~~~~~~~~~~~~~~  515 (535)
                      +.+..|++.+|..+|+..... .+|..++..+.+...+.           ...|...|...+...+++
T Consensus       402 ~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        402 ITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            999889999999999986533 45555555555444211           013455666666544444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.9e-23  Score=196.38  Aligned_cols=405  Identities=19%  Similarity=0.184  Sum_probs=276.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhccc--------CCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRF--------GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (535)
                      .+.+.+....+|....|...++...|.+...+        +++....+.+..+..+|.++||+++|++.||+|||+++..
T Consensus        40 fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~  119 (538)
T KOG0252|consen   40 FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGK  119 (538)
T ss_pred             HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhH
Confidence            45666677778888888888888777655443        1456677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh-------hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhh
Q 009409          185 GVLIWSLATALLPLLAG-------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (535)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (535)
                      .++++.+++++.+ ++.       -..++...|++.|+|.|+-+|...++.+|...++.||..++...+....|...|.+
T Consensus       120 ~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i  198 (538)
T KOG0252|consen  120 ELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI  198 (538)
T ss_pred             HHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence            9999999997554 331       14578899999999999999999999999999999999999999888888888877


Q ss_pred             hHHHhccc---------------cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCc-chhhhhhhhhh----hhhH
Q 009409          258 LAPPIIEN---------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAP-RSNYINMKKSL----SASL  317 (535)
Q Consensus       258 ~~~~l~~~---------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~  317 (535)
                      ++-.+...               .=||..|.+.++.+++.+..-+.+||+++.......+ +....+.++..    .++.
T Consensus       199 vt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~  278 (538)
T KOG0252|consen  199 VALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAES  278 (538)
T ss_pred             HHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhh
Confidence            76655421               1299999998888888888888888887654111111 00000000000    0000


Q ss_pred             H-HhccCCC---CCcHHHhhhc---HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHH--------HHhhH-
Q 009409          318 E-EMGESLK---DVPWKAIFRS---KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAW--------VSILP-  381 (535)
Q Consensus       318 ~-~~~~~~~---~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~--------~~~~~-  381 (535)
                      . +...+..   ...|...+..   +.++.....+|+...++|....+....++. .|+.+...-.        ...+. 
T Consensus       279 ~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia  357 (538)
T KOG0252|consen  279 TAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIA  357 (538)
T ss_pred             ccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHH
Confidence            0 0000001   1113333333   355566788899999999999888888863 4665444332        11111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc--HHHHHHHHHHHHHHhhhhhhhhh-
Q 009409          382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP--HWEIVGILTAGLALSSFALSGLY-  458 (535)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~-  458 (535)
                      ..+.++|..+...++|++|+         +.+.+.++.+..+..+......+..  ....+.+..+..+++.+.+.... 
T Consensus       358 ~~~~vPGyw~tv~~id~iGR---------k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf  428 (538)
T KOG0252|consen  358 VCSTVPGYWFTVYFIDIIGR---------KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTF  428 (538)
T ss_pred             HHccCCceeEEEEEeehhhh---------HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeE
Confidence            22223355556678999984         4677777777777666555433311  11112222333344445554443 


Q ss_pred             -hhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc-----ccCcchHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q 009409          459 -CTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD-----STHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQN  530 (535)
Q Consensus       459 -~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (535)
                       ..++.+|...|++..|+...++-+|+++|...++++.+     .. +...++++.+.+..+..+..+++. ++|.++
T Consensus       429 ivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~  504 (538)
T KOG0252|consen  429 IVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIP-ETKGKS  504 (538)
T ss_pred             EeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEee-cccccC
Confidence             34566888999999999999999999999999999999     54 478888888887766666555554 555544

>PRK09669 putative symporter YagG; Provisional

Probab=99.90  E-value=1.2e-20  Score=192.07  Aligned_cols=341  Identities=12%  Similarity=0.036  Sum_probs=218.9

Q ss_pred             HHhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc----cCCc-hhhHHHHHHHHHHHHHHHhh
Q 009409          126 CNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGR-KVLQTGVLIWSLATALLPLL  199 (535)
Q Consensus       126 ~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~~~~~~  199 (535)
                      ..+....++.+ .+.+.+.+|++..++|.+.++.-+..++..|+.|+++||    +||| +.++.+.+..+++..+.. .
T Consensus        21 ~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f-~   99 (444)
T PRK09669         21 CNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTF-Y   99 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHH-h
Confidence            33334444544 444788899999999999999999999999999999999    7774 555566666666654432 2


Q ss_pred             hhh------hhHHHHHHHHhhhccCCchhhHHHHhhhcc-cccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-------c
Q 009409          200 AGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-------N  265 (535)
Q Consensus       200 ~~~------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~  265 (535)
                      .++      ...+++..++.+.+.+.......++.+|+. ++++|.+..++......+|..+++.+...+..       .
T Consensus       100 ~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~  179 (444)
T PRK09669        100 TPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQ  179 (444)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            321      344555566667776677777788888987 56889998888888888888877765544332       2


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhh-cccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHH
Q 009409          266 LGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA  344 (535)
Q Consensus       266 ~gw~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (535)
                      .+|+..+.+.+++.++..+..++ .+|+.+++ ++  ++.                   .....++.++|||.++.+.+.
T Consensus       180 ~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~--~~~-------------------~~~~~~~~~~~n~~~~~l~~~  237 (444)
T PRK09669        180 KGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VD--NSS-------------------SVWKDLKLLLGNSQWRIMFIF  237 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-Cc--CCC-------------------CHHHHHHHHhCCchHHHHHHH
Confidence            47888888888776655444333 33321111 00  000                   001124678899999888877


Q ss_pred             HHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH-H
Q 009409          345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA-V  423 (535)
Q Consensus       345 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~  423 (535)
                      .++............+.|.+...+ +....+.+.....+..+++.++.+++.||+|+|       +..  ..+.+... .
T Consensus       238 ~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~-------~~~--~~~~~~~~~~  307 (444)
T PRK09669        238 NVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV-------RAF--KWTIVAFVIL  307 (444)
T ss_pred             HHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------HHH--HHHHHHHHHH
Confidence            776666655444444444443333 333344455555677788888999999999865       212  22222222 1


Q ss_pred             HHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccC-------CcchhHHHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          424 CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      .+.+.....++....++..++.+++.+...+.......+.++       .+..|...|..+.+..+|..+|+.++|.+.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        308 SALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222223333344555566677766666555555554443       3446788999999999999999999999998


Q ss_pred             ccC
Q 009409          497 STH  499 (535)
Q Consensus       497 ~~g  499 (535)
                      ..|
T Consensus       388 ~~G  390 (444)
T PRK09669        388 WVD  390 (444)
T ss_pred             HcC
Confidence            764

>TIGR00788 fbt folate/biopterin transporter

Probab=99.90  E-value=1.1e-21  Score=199.55  Aligned_cols=370  Identities=12%  Similarity=0.044  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccC-----CchhhHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVL  187 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~  187 (535)
                      ..+.++...++.+++. ...... .|.+.+++|++.++++...++..++..+-.+ +|+++||++     ||+.++++.+
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGL  103 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHH
Confidence            4455666677888888 554444 5557778999999999999999999988666 999999997     7777777766


Q ss_pred             HHH-HHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhh---HHHHHHHhhhhHHHHHhhhHHHhc
Q 009409          188 IWS-LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR---AVSFVFGGLSFGSVAGLLLAPPII  263 (535)
Q Consensus       188 ~~~-~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~~g~~~g~~~~~~l~  263 (535)
                      +.+ ++...++...++.....+..++.+++.+...+...+++.|..+ +++..   ..+......++|.++|+.++|.+.
T Consensus       104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            652 3322222112333344458899999999999999999999998 55544   334444455689999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHH
Q 009409          264 ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (535)
Q Consensus       264 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (535)
                      +.++|+..|++.+++.++..+...+++|+++....+..+++.... ........+...+.  .....+.+++|.++...+
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~l~~~~i~~~l~  259 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-ALLTLGVLANVKVQ--ILGLRGAIQLLEIAKPLI  259 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-hhhhhhHHHHHHHH--HHHHHHHHhcHHHHHHHH
Confidence            999999999999888877766667777753211111000000000 00000000000000  011345577888887665


Q ss_pred             HHHH-HhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Q 009409          344 AHFC-GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA  422 (535)
Q Consensus       344 ~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  422 (535)
                      ..++ +.........+. .+.++.+|+++...|++....+++.+++..+.+++.+|++.|         ....++.++.+
T Consensus       260 fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~~l~~  329 (468)
T TIGR00788       260 FIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTTLLYT  329 (468)
T ss_pred             HHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHH
Confidence            5555 222211111111 022346799999999999999999999888888887777643         22333333333


Q ss_pred             HHHHHhh-h----c----CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHH
Q 009409          423 VCMTLSS-I----D----LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGY  493 (535)
Q Consensus       423 ~~~~~~~-~----~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~  493 (535)
                      +...... .    .    .....+.....++.+++.+....+....+.+..|++.+|+.+|+.+++.++|..+++.++|.
T Consensus       330 ~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~  409 (468)
T TIGR00788       330 LSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL  409 (468)
T ss_pred             HHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221111 0    0    01222333344556666666677777888888999999999999999999999999999999


Q ss_pred             HhcccC
Q 009409          494 LLDSTH  499 (535)
Q Consensus       494 l~~~~g  499 (535)
                      +.+..|
T Consensus       410 l~~~~g  415 (468)
T TIGR00788       410 LMETIG  415 (468)
T ss_pred             HHHHcC
Confidence            999875

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.89  E-value=1.8e-20  Score=180.30  Aligned_cols=279  Identities=13%  Similarity=0.079  Sum_probs=204.7

Q ss_pred             hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc-------------
Q 009409          199 LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-------------  265 (535)
Q Consensus       199 ~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------  265 (535)
                      ..++++.+++.-++.|.|.+...+..+.++++..+++++++.+++.+..+++|..++|++++.+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4567799999999999999999999999999999999999999999999999999999999987732             


Q ss_pred             ---cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHH
Q 009409          266 ---LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMI  342 (535)
Q Consensus       266 ---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (535)
                         ..|+++|++.+++.++..+.+.+.+.++.+++..  ++...              ++.   ...+..+++|.++...
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~--~~~~~--------------~~~---~~~~~~~~~~~~~l~~  146 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV--ARVSS--------------GDT---TQKTSAFQFTHLVLGA  146 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc--ccccc--------------ccc---cchhhHHhhHHHHHHH
Confidence               4799999988777655555555543332211100  00000              000   0113467788888888


Q ss_pred             HHHHHHhhhhHHHHHhhHHHHHHH--hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 009409          343 YAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (535)
Q Consensus       343 l~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  420 (535)
                      +..+++.....++..|++.|+.+.  +|+++.+.+...+....+.++|+++.+++.||++.+        +.+ ..+.++
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~--------~~l-~~~~~l  217 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG--------RYL-AFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHH-HHHHHH
Confidence            888888889999999999999754  699999999999999999999999999999999865        222 222333


Q ss_pred             HHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCc
Q 009409          421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS  500 (535)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~  500 (535)
                      ..+...+.....  ........++.|++.+...+.......+..+ ++.+++.++. .++.+|++++|.+.|.+.|..| 
T Consensus       218 ~~~~~~l~~~~~--~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-  292 (310)
T TIGR01272       218 AVLLSIGAALTH--GYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-  292 (310)
T ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-
Confidence            333332222222  2333445566788888777777776666554 4566777775 5678999999999999999885 


Q ss_pred             chHHHHHHHH
Q 009409          501 WSMSLFAPSI  510 (535)
Q Consensus       501 ~~~~~~~~~~  510 (535)
                      ...+|++..+
T Consensus       293 ~~~a~~v~~~  302 (310)
T TIGR01272       293 IQLAFALPVP  302 (310)
T ss_pred             chHHHHHHHH
Confidence            7777765443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.88  E-value=2e-26  Score=235.66  Aligned_cols=399  Identities=18%  Similarity=0.212  Sum_probs=259.7

Q ss_pred             HHHHHHHhhhhhhHhhhhhhh--cccCCCc---------cchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHH
Q 009409          121 LAFVICNMDKVNLSVAIIPMS--HRFGWNS---------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~--~~~g~s~---------~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (535)
                      ++.+..+++...++...+...  ..++.+.         .+.+++.+...++..+|.+++|.++||+|||+.+.++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344666666666655544433  2232222         24688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh---hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc
Q 009409          190 SLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (535)
Q Consensus       190 ~~~~~~~~~~~~---~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (535)
                      .++.++.+ +++   +++.+.++|++.|++.|...+....++.|..|++.|++..++......+|.+++..++..+....
T Consensus        87 ~i~~~~~~-~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   87 IIGSILIA-FAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998775 666   78999999999999999999999999999999999999999999999999999988876654433


Q ss_pred             ---chhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhh-----hhhhhHHHh----ccC-CCCCcHHHhh
Q 009409          267 ---GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKK-----SLSASLEEM----GES-LKDVPWKAIF  333 (535)
Q Consensus       267 ---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~-~~~~~~~~~~  333 (535)
                         +||+.+++.++..++.++...++||.++.-..+.+.++.....++     ....+.++.    ++. ..+..+++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence               499999999998888777888889887654332222221111111     000000110    000 0113456666


Q ss_pred             hcHH----HHHHHHHHHHH-hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 009409          334 RSKA----VWAMIYAHFCG-SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (535)
Q Consensus       334 ~~~~----~~~~~l~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  408 (535)
                      +++.    +.......++. ..+.+....+.|.+++ ..|.+..  -.......+...++.++...+.||+|||+.    
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~----  318 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL----  318 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccc--cccccccccccccccccccccccccccccc----
Confidence            6643    22222222222 2233345556666664 4566655  223344556666777777899999997632    


Q ss_pred             HHHHHHHHHHHHHHHHHHHh----hhcCCC----cHHHHHHHHHHHHHHh-hhhhhhhhhhhhccCCcchhHHHHHHHHh
Q 009409          409 VRKICQTIAFLSPAVCMTLS----SIDLGL----PHWEIVGILTAGLALS-SFALSGLYCTHQDISPEYASILLGITNTV  479 (535)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  479 (535)
                           ...+....+++....    ......    ..+.++...+...... +..+....+..+.+|.+.|+++.|+...+
T Consensus       319 -----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~  393 (451)
T PF00083_consen  319 -----LIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAV  393 (451)
T ss_pred             -----cccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccc
Confidence                 222222222222222    111221    1222222222211222 22333334557778999999999999999


Q ss_pred             hhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCCCC
Q 009409          480 GAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFST  533 (535)
Q Consensus       480 ~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (535)
                      +.++++++|.+...+.+..+ ....+.+.+++.++..+..+.+.+++|.++.++
T Consensus       394 ~~i~~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e  446 (451)
T PF00083_consen  394 GRIGGFIIPFLFPYLFNNLG-GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEE  446 (451)
T ss_pred             cccccccccccccccccccc-ccccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence            99999999999988888764 344555556666777777788888888876543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.87  E-value=1.1e-19  Score=186.15  Aligned_cols=351  Identities=11%  Similarity=0.043  Sum_probs=225.7

Q ss_pred             HHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhc----ccCC-chhhHHHHHHHHHHHH
Q 009409          121 LAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGG-RKVLQTGVLIWSLATA  194 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~~  194 (535)
                      +..+...+....+.++++. +.+.+|++...+|.+..+.-+..++..|+.|.++|    |+|| |+.++.+....+++..
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            4444455555666666555 66778999999999999999999999999999999    5698 5566667777666654


Q ss_pred             HHHhhhhh------hhHHHHHHHHhhhccCCchhhHHHHhhhcc-cccchhhHHHHHHHhhhhHHHHHhhhHHHhcc---
Q 009409          195 LLPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---  264 (535)
Q Consensus       195 ~~~~~~~~------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---  264 (535)
                      ++ +..++      +..+++..++.+++.+...+...++..|.. +++||.+..++...+.++|..+.+.+...+.+   
T Consensus        93 ll-f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g  171 (473)
T PRK10429         93 LL-FSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG  171 (473)
T ss_pred             HH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44 33221      234555666777888888888889999988 58999999998777777776666555443322   


Q ss_pred             ----ccchhHHHHHHHHHHHHHHHHhh-hcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHH
Q 009409          265 ----NLGWESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (535)
Q Consensus       265 ----~~gw~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (535)
                          ..+|++..++.+++.++..+..+ ..+|+++....+..++++                 ...+..++.+++||.++
T Consensus       172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~n~~~~  234 (473)
T PRK10429        172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSH-----------------LTLKDIVALIYKNDQLS  234 (473)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccC-----------------CCHHHHHHHHhcCHHHH
Confidence                23577777777666655443333 344432111100000000                 00011245667899998


Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      .+++..++.....+....+.+.|++.. ..+....+.+.....++.+++.++.+++.||+|+|       +..  ..+.+
T Consensus       235 ~ll~~~~~~~~~~~~~~~~~~y~~~y~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-------~~~--~~~~~  304 (473)
T PRK10429        235 CLLGMALAYNIASNIINGFAIYYFTYV-IGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR-------ILW--AGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeEEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-------HHH--HHHHH
Confidence            888888888877777777777666533 33555666677777788899999999999999875       222  22222


Q ss_pred             HHHHHHHH-hh---hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccC-------CcchhHHHHHHHHhhhhhhhHHH
Q 009409          420 SPAVCMTL-SS---IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGV  488 (535)
Q Consensus       420 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~igp  488 (535)
                      +..+..+. ..   ...++.+..++..++.+++.+...........+.++       .+..|..+|..+.+..+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            21211111 11   112223333444455566666555554445554433       34467799999999999999999


Q ss_pred             HHHHHHhcccC
Q 009409          489 ALTGYLLDSTH  499 (535)
Q Consensus       489 ~i~G~l~~~~g  499 (535)
                      .+.|.+.+..|
T Consensus       385 ~i~g~~l~~~G  395 (473)
T PRK10429        385 FFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHcC
Confidence            99999987654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.87  E-value=2.5e-20  Score=176.99  Aligned_cols=398  Identities=14%  Similarity=0.129  Sum_probs=279.7

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHH
Q 009409          105 PWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT  184 (535)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (535)
                      ..|..++||.+++.+++..+.+.+.+..+++......+.+| +....-|...+|.+.+....+++-|+.||+|-|...++
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            44566778888888888888888888888887777777788 88888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh-----hhhh--HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhh
Q 009409          185 GVLIWSLATALLPLLA-----GFMP--GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (535)
Q Consensus       185 ~~~~~~~~~~~~~~~~-----~~~~--~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (535)
                      +..+.+++..+-....     +.++  ....+..+.+.+.........-+...||++++|..+..+-.++..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999987764332     2233  56688888888888777777788889999999999999999999999999999


Q ss_pred             hHHHhcccc------chhH--HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcH
Q 009409          258 LAPPIIENL------GWES--VFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPW  329 (535)
Q Consensus       258 ~~~~l~~~~------gw~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (535)
                      +...+..+.      .|..  .|+..+++..+.++...+...++++.+.........               +..-....
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~si  259 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKSI  259 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHHH
Confidence            988887543      3554  344444444333333333222222111111100000               00012235


Q ss_pred             HHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhH
Q 009409          330 KAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMV  409 (535)
Q Consensus       330 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~  409 (535)
                      ++.++|+++..+.+.+.+....+++..+.+-.-+. .-|++...+|....+..+++++++.+.|.+.||.++-       
T Consensus       260 ~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f-------  331 (480)
T KOG2563|consen  260 KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF-------  331 (480)
T ss_pred             HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH-------
Confidence            78899999999988888888888888777775564 3478878899999999999999999999999998542       


Q ss_pred             HHHHHHHHHHHHHHH-HHHh--hhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhH
Q 009409          410 RKICQTIAFLSPAVC-MTLS--SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV  486 (535)
Q Consensus       410 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i  486 (535)
                      +.... +......+. +.+.  .......++.+..+.++|.+.....+...-...+...|..-++..|+.+..+++-+++
T Consensus       332 k~~~~-v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~  410 (480)
T KOG2563|consen  332 KLTTL-VLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI  410 (480)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence            22222 222222222 2222  2223344555566667777777777766666667778888999999999999999999


Q ss_pred             HHHHHHHHhcccC----cchHHHHHHHHHHHHHHHhhhhhccCCCC
Q 009409          487 GVALTGYLLDSTH----SWSMSLFAPSIFFYLTGTIVWLAFASSKP  528 (535)
Q Consensus       487 gp~i~G~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (535)
                      -..+.+...+..+    .+... +.+...+++...++.+++...++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  411 LVFIMGILAEDLGPPGNTFPAN-IFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             HHHHHHHHhhccCCCCCCccch-hHhHHHHHHHHHHHhhhhhhHHh
Confidence            9999999998775    23222 33333344445555555443333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.87  E-value=6.5e-20  Score=185.84  Aligned_cols=345  Identities=18%  Similarity=0.188  Sum_probs=247.6

Q ss_pred             HHhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhc----ccCCchhhH-HHHHHHHHHHHHHHhh
Q 009409          126 CNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK----IFGGRKVLQ-TGVLIWSLATALLPLL  199 (535)
Q Consensus       126 ~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~-~~~~~~~~~~~~~~~~  199 (535)
                      ..+..+..+.+ .+.+.+.+|+++..+|.+..+..+..++..|+.|.++|    |+||||.++ ++....+++..++...
T Consensus        13 ~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~   92 (428)
T PF13347_consen   13 YNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP   92 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence            33344444444 55577888999999999999999999999999999999    799766555 6767777776665322


Q ss_pred             hh-------hhhHHHHHHHHhhhccCCchhhHHHHhhhccc-ccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-----
Q 009409          200 AG-------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-----  266 (535)
Q Consensus       200 ~~-------~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----  266 (535)
                      .+       ....+.+..++..++.........++..|..+ +++|.+..+....+..+|.++...+.+.+.+..     
T Consensus        93 ~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~  172 (428)
T PF13347_consen   93 PPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT  172 (428)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc
Confidence            12       12235677777799999999999999999996 578999999999988888876666666655322     


Q ss_pred             --chhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHH
Q 009409          267 --GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYA  344 (535)
Q Consensus       267 --gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  344 (535)
                        +|++..++.+++.++..+...+..++++.+..+..+                   +..-...++.+++||.++.+.+.
T Consensus       173 ~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l~~~  233 (428)
T PF13347_consen  173 SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRILLLA  233 (428)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHHHHH
Confidence              699999998888776655444443321111110000                   01112346788999999999999


Q ss_pred             HHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Q 009409          345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC  424 (535)
Q Consensus       345 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (535)
                      .++...+........+.|.+...|.+ ...+.+.....++.+++.++.++++||+|+|+.         ...+.+..++.
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~---------~~~~~~~~~~~  303 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV---------YIIGLLLAALG  303 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee---------hhhhHHHHHHH
Confidence            99988888888888898888877777 456667778889999999999999999987632         22333333333


Q ss_pred             HHHhhhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccC-------CcchhHHHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          425 MTLSSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       425 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      ..+..+.. ++..+.++..++.|++.+...........+..+       +++.|...|+.+....++..+++.+.|.+.+
T Consensus       304 ~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  304 FLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            33322222 556667777777888777766555555554433       4557999999999999999999999999987


Q ss_pred             ccC
Q 009409          497 STH  499 (535)
Q Consensus       497 ~~g  499 (535)
                      ..|
T Consensus       384 ~~G  386 (428)
T PF13347_consen  384 LVG  386 (428)
T ss_pred             HhC
Confidence            654

>PRK09848 glucuronide transporter; Provisional

Probab=99.86  E-value=6.2e-19  Score=179.90  Aligned_cols=347  Identities=11%  Similarity=0.038  Sum_probs=211.7

Q ss_pred             HHHHHHHhhhhhhHhhh-hhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc----CCchhh-HHHHHHHHHHHH
Q 009409          121 LAFVICNMDKVNLSVAI-IPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF----GGRKVL-QTGVLIWSLATA  194 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~~~~  194 (535)
                      +..+...+......+++ +.+.+.+|++..++|.+.++..+..++..+++|+++||.    |||+.+ ..+.+...+...
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            34444444554554443 457777899999999999999999999999999999996    666644 555554444443


Q ss_pred             HHHhhh----h--hhhHHHHHHHHhhhccCCchhhHHHHhhhcc-cccchhhHHHHHHHh-----hhhHHHHHhhhHHHh
Q 009409          195 LLPLLA----G--FMPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGG-----LSFGSVAGLLLAPPI  262 (535)
Q Consensus       195 ~~~~~~----~--~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~-----~~~g~~~g~~~~~~l  262 (535)
                      +.....    .  .....++..++.+++.+...+...++..+.. ++++|.+..++...+     ..++..++|.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848         95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            321111    1  1122344556677777777777777666655 446788877665543     335555666666543


Q ss_pred             cccc--chhHHHHHHHHHHHHHH-HHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHH
Q 009409          263 IENL--GWESVFYIFGLLGIAWF-SGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVW  339 (535)
Q Consensus       263 ~~~~--gw~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (535)
                      ....  +|.....+.+++.++.. +.....+|+.+++.++  .                     .....++.+++||.++
T Consensus       175 g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~--~---------------------~~~~~~~~l~~n~~f~  231 (448)
T PRK09848        175 PEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ--P---------------------SLKISLQTLKRNRPLF  231 (448)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC--C---------------------CHHHHHHHHhCCchHH
Confidence            2111  12111122222222222 2222233322111000  0                     0011256788999999


Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      ...+..++...+........|.|+++.+|.+....++......++.+++.++.+++.||+++|         ....++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---------~~~~~g~~  302 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK---------NTFLIGAL  302 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHH
Confidence            988888888888888888888888888888776666555555667788899999999999864         22223333


Q ss_pred             HHHHHHHHhhhcCCCcH-HHHHHHHHHHHHHhhhhhhhhhhhhhccCC-------cchhHHHHHHHHhhhhhhhHHHHHH
Q 009409          420 SPAVCMTLSSIDLGLPH-WEIVGILTAGLALSSFALSGLYCTHQDISP-------EYASILLGITNTVGAVPGIVGVALT  491 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~lg~~igp~i~  491 (535)
                      +..+............. ..++..++.+++.+...+.......+..+.       ++.|...|+.+....+|..+|+.+.
T Consensus       303 ~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        303 LGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333222222223 333445556666665555555555444443       3469999999999999999999999


Q ss_pred             HHHhcccC
Q 009409          492 GYLLDSTH  499 (535)
Q Consensus       492 G~l~~~~g  499 (535)
                      |.+.+..|
T Consensus       383 g~~l~~~G  390 (448)
T PRK09848        383 AFILGLSG  390 (448)
T ss_pred             HHHHHHcC
Confidence            99987654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=1.2e-18  Score=164.82  Aligned_cols=352  Identities=15%  Similarity=0.083  Sum_probs=257.3

Q ss_pred             ccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH-HHHHHHhhhh--hhhHHHHHHHHhhhccCCchhhH
Q 009409          148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL-ATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAA  224 (535)
Q Consensus       148 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~  224 (535)
                      .+..+...++..+..++..++.|.++|+.|+||.........++ +..++.+..+  +++..++...+..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            34567788888888899999999999999977766655444444 4444444444  45566777788888888889999


Q ss_pred             HHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhH--HHhc----------------cccchhHHHHHHHHHHHHHHHHh
Q 009409          225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA--PPII----------------ENLGWESVFYIFGLLGIAWFSGF  286 (535)
Q Consensus       225 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~----------------~~~gw~~~f~~~~~~~~~~~~~~  286 (535)
                      .+++.+..++++-++..++-.....+|+.+--++.  +.+.                +...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999989998888888888877765553  1111                22357888888888777666555


Q ss_pred             hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH
Q 009409          287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE  366 (535)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~  366 (535)
                      ++..++.+.... ...+  .  ..+..    ++.     ...++++.+++.+..+.++.+++.-+..++..+...|-.+.
T Consensus       217 ~~~v~~~~~~~~-~~~~--~--l~~g~----k~L-----~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~  282 (438)
T COG2270         217 ILNVHDAEKISS-PPPT--A--LRNGF----KEL-----KSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD  282 (438)
T ss_pred             Hhcccccccccc-cchH--H--HHHHH----HHH-----HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            554443332210 0000  0  00000    000     12357778888999999999999999999999999999989


Q ss_pred             hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 009409          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAG  446 (535)
Q Consensus       367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  446 (535)
                      +|++..+..++.....+.+++|+++.|++.||++.|..        +....++....++.....  ....-.++..+++|
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v--------l~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g  352 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV--------LMIGLVILSIAALYLIFL--EGELDFWILGLLVG  352 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee--------ehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHH
Confidence            99999999999999999999999999999999987622        222222223333333332  22344445556788


Q ss_pred             HHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhc
Q 009409          447 LALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  523 (535)
                      .+.+........+..+.+|+++.++.+|+++..+......||.+.+.+.+.+|+.+..+....++.++..++++...
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence            88899999999999999999999999999999999999999999999999999988888877765555554444433

>PRK11462 putative transporter; Provisional

Probab=99.83  E-value=5.7e-17  Score=165.07  Aligned_cols=344  Identities=13%  Similarity=0.046  Sum_probs=213.0

Q ss_pred             HHHHHHhhhhhhHhhhh-hhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc----cCCchh-hHHHHHHHHHHHHH
Q 009409          122 AFVICNMDKVNLSVAII-PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKV-LQTGVLIWSLATAL  195 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~~  195 (535)
                      ..+...+....++.++. .+.+..|+++..+|.+..+.-+.-++..|+.|.++||    +||||. ++++.+.++++..+
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l   96 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL   96 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence            33333444445555444 4778889999999999999999999999999999996    687655 45565666666655


Q ss_pred             HHhhhhh------hhHHHHHHHHhhhccCCchhhHHHHhhhccc-ccchhhHHHHHHHhhhhHHHHHhhhHHHhccc---
Q 009409          196 LPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN---  265 (535)
Q Consensus       196 ~~~~~~~------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  265 (535)
                      + +..+.      ...+++..++..++.........++.++..+ ++||.+..++...+..+|..+++.+...+.+.   
T Consensus        97 l-f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~  175 (460)
T PRK11462         97 A-YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG  175 (460)
T ss_pred             H-HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4 33321      2335556666788888888888888888885 79999999999999999988887776555433   


Q ss_pred             ----cchhHHHHHHHHHHHHHHHHhhh-cccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHH
Q 009409          266 ----LGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWA  340 (535)
Q Consensus       266 ----~gw~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (535)
                          .+|+....+.+++.+++..+.+. .+|.++. +.   ++..   .                +..++..++||.++.
T Consensus       176 ~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-~~---~~~~---~----------------~~~l~~~~~Nk~~~~  232 (460)
T PRK11462        176 DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-PP---TTTS---M----------------REDLRDIWQNDQWRI  232 (460)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-Cc---cCCC---H----------------HHHHHHHhCChHHHH
Confidence                25777777777766555443333 2222111 10   0000   0                012457788888877


Q ss_pred             HHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 009409          341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (535)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  420 (535)
                      +....++..............|.+..+|. +...+.+.....++.+++.+++++++||+++|       + .........
T Consensus       233 l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk-------~-~~~~~~~~~  303 (460)
T PRK11462        233 VGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV-------T-IFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-------H-HHHHHHHHH
Confidence            76666666555555545555455433443 33445566677788889999999999999764       2 211111211


Q ss_pred             HHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccC-------CcchhHHHHHHHHhhhhhhhHHHHHHHH
Q 009409          421 PAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDIS-------PEYASILLGITNTVGAVPGIVGVALTGY  493 (535)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~igp~i~G~  493 (535)
                      ....+.+......+....++..++.+++.+...........+..+       .+..|...+..+....+|..+++.+.|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        304 AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            121222222222222223333344454443333222223333222       3344666788889999999999999999


Q ss_pred             Hhccc
Q 009409          494 LLDST  498 (535)
Q Consensus       494 l~~~~  498 (535)
                      +++..
T Consensus       384 iL~~~  388 (460)
T PRK11462        384 MLAYG  388 (460)
T ss_pred             HHHHc
Confidence            98764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=1.6e-17  Score=169.35  Aligned_cols=288  Identities=16%  Similarity=0.192  Sum_probs=226.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      ..+.++++..+.+.+....+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-++.+++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            45667777788888888778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhh----------------------------------------------------hhHHHHHHHHhhhccCCch
Q 009409          194 ALLPLLAGF----------------------------------------------------MPGLVLSRVLVGIGEGVSP  221 (535)
Q Consensus       194 ~~~~~~~~~----------------------------------------------------~~~l~~~~~~~G~~~~~~~  221 (535)
                      ++.++- +.                                                    +..++++.++.|+|....+
T Consensus       177 ll~alP-Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  177 LLFALP-HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHhCh-HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            887532 11                                                    1147788999999999999


Q ss_pred             hhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-------------------chhHHHHHHHHHHHHH
Q 009409          222 SAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------------------GWESVFYIFGLLGIAW  282 (535)
Q Consensus       222 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------------------gw~~~f~~~~~~~~~~  282 (535)
                      +...+|+-|...+++-+..+|+......+|+++|-++++++...+                   -|...|++.+.+.++.
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886421                   2777888888888888


Q ss_pred             HHHhhhcccCCCCCCCCCCcchhhhhhhhhh-hhhHHHhccCCC--CCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhh
Q 009409          283 FSGFKILQEGETSNGATLAPRSNYINMKKSL-SASLEEMGESLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWL  359 (535)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  359 (535)
                      .+.++++|.+.+...++...++....+.+.. ........+..+  ....+++++||.+....+...+....+.++.+|+
T Consensus       336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence            8888888887665443211111100000000 000000000001  1235788999999999999999999999999999


Q ss_pred             HHHHHHHhCCChhhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHc
Q 009409          360 PTYFSEELSLNLTEAAWVSILPPLA-SVLVTSIAAQFADNLIAT  402 (535)
Q Consensus       360 p~~l~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~l~dr~~~~  402 (535)
                      |.|++.+||.++..+..+.....+. ..+|.+++|++..|+.-+
T Consensus       416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence            9999999999999999888666664 457888899999998543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.81  E-value=8.1e-17  Score=156.06  Aligned_cols=386  Identities=16%  Similarity=0.196  Sum_probs=241.6

Q ss_pred             hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHhhhcc
Q 009409          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLA-GFMPGLVLSRVLVGIGE  217 (535)
Q Consensus       140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~G~~~  217 (535)
                      +.+.+|++++++.-+.+.|..---+.++++|+++|| +|+|+++..+.+++.++.++++..+ .....+++..++.++|.
T Consensus        52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~  131 (498)
T COG3104          52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT  131 (498)
T ss_pred             ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence            344455999999888888887777899999999999 5999999999999999998886543 45678999999999999


Q ss_pred             CCchhhHHHHhhhccccc--chhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccCCCC
Q 009409          218 GVSPSAATDLIARSIPLE--ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETS  295 (535)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  295 (535)
                      |..-+...++++|.+|++  +|-..+++++++.++|+.++|++.+++.++.||...|-+.++-..+.++.+...++.-..
T Consensus       132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            999999999999999753  377889999999999999999999999999999999999988877766666655432221


Q ss_pred             CCC----CCCcchhhhhh-h----hhhhhh--HHHhccCCC-----------CCcHHHhh------hc-HHHHH---HHH
Q 009409          296 NGA----TLAPRSNYINM-K----KSLSAS--LEEMGESLK-----------DVPWKAIF------RS-KAVWA---MIY  343 (535)
Q Consensus       296 ~~~----~~~~~~~~~~~-~----~~~~~~--~~~~~~~~~-----------~~~~~~~~------~~-~~~~~---~~l  343 (535)
                      ...    ........... .    ......  .....+...           ...+.+.+      .+ ++.+.   +.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl  291 (498)
T COG3104         212 IGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFL  291 (498)
T ss_pred             CCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence            111    11110000000 0    000000  000000000           00000000      11 12222   222


Q ss_pred             HHHHHhhhhHHHHHhhHHHHHHH-----hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 009409          344 AHFCGSWGHYTCLSWLPTYFSEE-----LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF  418 (535)
Q Consensus       344 ~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  418 (535)
                      ...++...+....+.+..|..+.     +|++ ....+.-++..+.-++..++..++..|.++++..+....|.......
T Consensus       292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l  370 (498)
T COG3104         292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLIL  370 (498)
T ss_pred             HHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHH
Confidence            22222222222233344444322     2221 12334557777777888888889988877766544433443333333


Q ss_pred             HHHHHHHHHhh---h----cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHH
Q 009409          419 LSPAVCMTLSS---I----DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALT  491 (535)
Q Consensus       419 ~~~~~~~~~~~---~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  491 (535)
                      ..+...++...   .    ...+..|.+...++..++--+..+.....+.+..|+...+.++|+.......|..++..+.
T Consensus       371 ~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va  450 (498)
T COG3104         371 AGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVA  450 (498)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceec
Confidence            32222222222   1    1124567777788888888888999999999989998888888887766666666666555


Q ss_pred             HH------HhcccCcchHHHHHHHHHHHHHHHhhhhhccCCC
Q 009409          492 GY------LLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK  527 (535)
Q Consensus       492 G~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (535)
                      +.      ..+.. .....|...+....+....++...++.+
T Consensus       451 ~~~~~~~~~~~~~-~~~~~F~~~g~v~i~~~~~~~~~~~~~~  491 (498)
T COG3104         451 GLTAVTDPAYTAF-IEGRVFGTIGVVAIVIGILLLLLSPKLN  491 (498)
T ss_pred             ccccccchhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            52      22332 3556676666666666665555544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.79  E-value=8.6e-16  Score=146.25  Aligned_cols=353  Identities=18%  Similarity=0.172  Sum_probs=244.8

Q ss_pred             hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccC-----CchhhHHHHH-HHHHHHHHHHh----hhh--------
Q 009409          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVL-IWSLATALLPL----LAG--------  201 (535)
Q Consensus       140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~-~~~~~~~~~~~----~~~--------  201 (535)
                      +..|++++....+.+.++.++.. ...+.+|+.+|+.+     ||..+++... +.+.+..+...    .+.        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            56788999999999999988775 56899999999998     7777765443 33333322211    122        


Q ss_pred             hhh---HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHH---H
Q 009409          202 FMP---GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI---F  275 (535)
Q Consensus       202 ~~~---~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~---~  275 (535)
                      .+.   ...+...+.|+|.+...+...++++|..++++|+++.++...+.-+|.+++..+.+.+.+.+.-.-..-+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            111   3445567889999999999999999999999999999999999999999999999999887663322222   2


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHH
Q 009409          276 GLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (535)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (535)
                      +++.++..++..+=.|++.++.....++++.                 .-...++++..+|+...+.+..++...+++.=
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~-----------------~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~Q  227 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAAAERPRP-----------------PFREAWRQVWASPQARRFFVFLFLGTLAFFMQ  227 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCCCCCCc-----------------cHHHHHHHHHhCCChhHHHHHHHHHHHHHHhh
Confidence            2222222222222223222222211111100                 00123567778898888888888888888887


Q ss_pred             HHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 009409          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLP  435 (535)
Q Consensus       356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (535)
                      ...+-.|--+.+|+++.+...+......+..+|..+.|++..|-    ..+.+..+.  .......+..++......++.
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~----~~~~~~a~~--G~~~~~~~f~lii~a~~~~~~  301 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR----LGKKRTAAL--GCLLGALAFALIILAGPLGSP  301 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCchHHHHH--HHHHHHHHHHHHHHHHhcccc
Confidence            88888888899999999999999999999999999999877642    222211222  111122222223333334566


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc----C-----cchHHHH
Q 009409          436 HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST----H-----SWSMSLF  506 (535)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----g-----~~~~~~~  506 (535)
                      +......+++|++.+.+.........+...+++.|..+|.....+.++..++..++|.+.|..    +     .|..+|.
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~  381 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA  381 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            777788899999999999998888888888999999999999999999999999999888742    2     2555665


Q ss_pred             HHHHHHHHHH
Q 009409          507 APSIFFYLTG  516 (535)
Q Consensus       507 ~~~~~~~~~~  516 (535)
                      +=++.++++.
T Consensus       382 lEa~ll~~a~  391 (403)
T PF03209_consen  382 LEAVLLLAAL  391 (403)
T ss_pred             HHHHHHHHHH
Confidence            5555444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.78  E-value=1.9e-20  Score=191.16  Aligned_cols=379  Identities=17%  Similarity=0.229  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (535)
                      ++.+++..+.+.+........+..+++.|+++.++.|++.+.+-++..+..++..++.+|..|-+++-++.+++++++++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHH
Confidence            34455556666566666677788999999999999999999999999999999999999998989999999999998877


Q ss_pred             HHhhhhh--------------------------------------------------hhHHHHHHHHhhhccCCchhhHH
Q 009409          196 LPLLAGF--------------------------------------------------MPGLVLSRVLVGIGEGVSPSAAT  225 (535)
Q Consensus       196 ~~~~~~~--------------------------------------------------~~~l~~~~~~~G~~~~~~~~~~~  225 (535)
                      +++ .+.                                                  +..++++.++.|+|.+..++...
T Consensus        85 ~~l-Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   85 FAL-PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             Hhc-cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            642 111                                                  13478889999999999999999


Q ss_pred             HHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc---------------------cc-hhHHHHHHHHHHHHHH
Q 009409          226 DLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN---------------------LG-WESVFYIFGLLGIAWF  283 (535)
Q Consensus       226 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~g-w~~~f~~~~~~~~~~~  283 (535)
                      +|+-|..++++-+..+|+..+...+|+++|-++++.+...                     .| |-..|++.+++.++..
T Consensus       164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a  243 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA  243 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999877642                     12 6667777777777777


Q ss_pred             HHhhhcccCCCCCCCCCCcchhhh-hhhhhhhhh-HHHh-----ccCCC--CCcHHHhhhcHHHHHHHHHHHHHhhhhHH
Q 009409          284 SGFKILQEGETSNGATLAPRSNYI-NMKKSLSAS-LEEM-----GESLK--DVPWKAIFRSKAVWAMIYAHFCGSWGHYT  354 (535)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  354 (535)
                      +..+.+|+.-+...+...+++... +.++...+. .++.     .+..+  ....+++++||.+....+...+......+
T Consensus       244 ipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G  323 (539)
T PF03137_consen  244 IPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSG  323 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            777777776554411111111000 000000000 0000     01111  23457899999999999999999999999


Q ss_pred             HHHhhHHHHHHHhCCChhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh---
Q 009409          355 CLSWLPTYFSEELSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI---  430 (535)
Q Consensus       355 ~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  430 (535)
                      +.+++|.|++.+++.++.++.++.....+ ++++|.+++|++.+|++-+....   .+......++........+..   
T Consensus       324 ~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~---~~~~~v~~~v~~~~~~~~~~~~C~  400 (539)
T PF03137_consen  324 FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA---AKFCIVVSIVSVILYSPLFFLGCP  400 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH---HHHHHHHHHHHHHHHHHHHeecCC
Confidence            99999999999999999999988766655 66688899999999986542211   122222222211110000000   


Q ss_pred             -------cCCC--------------------------------------cHHHH-HHHHHHHHHHhhhhhhhhhhhhhcc
Q 009409          431 -------DLGL--------------------------------------PHWEI-VGILTAGLALSSFALSGLYCTHQDI  464 (535)
Q Consensus       431 -------~~~~--------------------------------------~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~  464 (535)
                             ..+.                                      ....+ +.+++..+..+....+......+.+
T Consensus       401 ~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V  480 (539)
T PF03137_consen  401 NPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCV  480 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccC
Confidence                   0000                                      00111 1112222233333445555667789


Q ss_pred             CCcchhHHHHHHHHhh-hhhhhHHHHHHHHHhccc
Q 009409          465 SPEYASILLGITNTVG-AVPGIVGVALTGYLLDST  498 (535)
Q Consensus       465 ~~~~~g~~~g~~~~~~-~lg~~igp~i~G~l~~~~  498 (535)
                      ++++|+.+.|+...+. -+|.+-||+++|.+.|..
T Consensus       481 ~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  481 PPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -----------------------------------
T ss_pred             ChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            9999999999988665 558899999999999964

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.9e-15  Score=148.07  Aligned_cols=353  Identities=14%  Similarity=0.128  Sum_probs=245.1

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc----cCC-chhhHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGG-RKVLQTGVLIWSL  191 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~-r~~~~~~~~~~~~  191 (535)
                      .-.+..+...........++.. +.+.+|+++..+|.+..+.-+--++..|+.|.++||    +|| |+.++.+.+-+++
T Consensus        16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i   95 (467)
T COG2211          16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI   95 (467)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence            3344555555566666666555 778899999999999999999999999999999996    666 4556666677777


Q ss_pred             HHHHHHhhhhh------hhHHHHHHHHhhhccCCchhhHHHHhhhcc-cccchhhHHHHHHHhhhhHHHHHhhhHHHhcc
Q 009409          192 ATALLPLLAGF------MPGLVLSRVLVGIGEGVSPSAATDLIARSI-PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (535)
Q Consensus       192 ~~~~~~~~~~~------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (535)
                      .+.++ +.+++      ..-.++...+.+++.+....+..++.+++. +++||.+..++...+..+|..+...+.+.+..
T Consensus        96 ~~~l~-F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211          96 VAVLL-FITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             HHHHH-HcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665 34442      345677788899999999888899998888 46999999999999999997777666655543


Q ss_pred             -------ccchhHHHHHHHHHHHHHHHHhhh-cccCCCCCCCCCC-cchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhc
Q 009409          265 -------NLGWESVFYIFGLLGIAWFSGFKI-LQEGETSNGATLA-PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRS  335 (535)
Q Consensus       265 -------~~gw~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (535)
                             ..||+..-++.+++..+..+..++ .+|...+...... .+.+                   .+..+..+++|
T Consensus       175 ~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~-------------------~~~~~~~~~~N  235 (467)
T COG2211         175 LFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLK-------------------LKDSFLLIFKN  235 (467)
T ss_pred             HhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccccc-------------------HHHHHHHHHcc
Confidence                   347888888877777665544443 3333321111110 0000                   01113467899


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      |++...++..++...+..........|.+..+|.+.............+.+++.++..++.+|+|+|         ....
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk---------~~~~  306 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK---------KLFL  306 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH---------HHHH
Confidence            9999988888888888887888888888777788888887777777777778899999999999875         3333


Q ss_pred             HHHHHHHHHHHHhhhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhc-------cCCcchhHHHHHHHHhhhhhhhHH
Q 009409          416 IAFLSPAVCMTLSSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQD-------ISPEYASILLGITNTVGAVPGIVG  487 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~g~~~g~~~~~~~lg~~ig  487 (535)
                      .+.++..+......+.. ++..+.++..++.+++.+...+..-....+.       ...+..|...|.+.++.-+|.+++
T Consensus       307 ~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala  386 (467)
T COG2211         307 IGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA  386 (467)
T ss_pred             HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            44444444433333333 3334444444555555554444333333322       244567999999999999999999


Q ss_pred             HHHHHHHhcccC
Q 009409          488 VALTGYLLDSTH  499 (535)
Q Consensus       488 p~i~G~l~~~~g  499 (535)
                      ..+.|++.+..|
T Consensus       387 ~~~~g~~L~~~G  398 (467)
T COG2211         387 GFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHcC
Confidence            999999998765

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.75  E-value=3.2e-16  Score=153.72  Aligned_cols=392  Identities=16%  Similarity=0.146  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcc--cCCCccchhHHHHHHHHHHHhhhccchhhhcccCC-chhhHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQTGVLIW  189 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~  189 (535)
                      ||.+.+..+..|+..+..+++.+..-.+.++  .+.+.+..|++.++..++.+++.++.|+...|.+. |+.++.+.++.
T Consensus        33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence            4777777788888888888877775555555  77888999999999999999999999999999986 88888888888


Q ss_pred             HHHHHHHHhh---hh-hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc
Q 009409          190 SLATALLPLL---AG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (535)
Q Consensus       190 ~~~~~~~~~~---~~-~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (535)
                      .++.++....   .+ .-+.++++|++.|+|.+.. ...-+|+++....++|.++++....+..+|.++||.+...+...
T Consensus       113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            8888776322   23 4578999999999997765 46678888888778999999999998888888888887766531


Q ss_pred             --cc-----------hhHHHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHH
Q 009409          266 --LG-----------WESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKA  331 (535)
Q Consensus       266 --~g-----------w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (535)
                        .|           +..+-|+.+++.++.++ +..++.|.......+..+.++.      .....+  +.+..+     
T Consensus       192 g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~------~~~~~~--~~~~~~-----  258 (488)
T KOG2325|consen  192 GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE------EKSDIE--KVKKPK-----  258 (488)
T ss_pred             cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh------hccchh--hhccCC-----
Confidence              11           34556667766665544 4444555443332221111100      000000  000000     


Q ss_pred             hhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHH----hhHHHHHHHHHHHHHHHHHHHHHcCCCch
Q 009409          332 IFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS----ILPPLASVLVTSIAAQFADNLIATGVETT  407 (535)
Q Consensus       332 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~----~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  407 (535)
                       +.....+.+.+..+..........+..+.+....++.+..++-...    +..++......  .....-|+++-  .. 
T Consensus       259 -~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~--l~~~f~~l~~i--~~-  332 (488)
T KOG2325|consen  259 -LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILL--LLYIFTRLGKI--DK-  332 (488)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHH--HHHHHHHhhhh--cc-
Confidence             0112334445555555555555566666666667777655554333    33222222222  22333333320  00 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh--hhcCCC-c--------------------------HHHHH--HHHHHHHHHhhhhhhh
Q 009409          408 MVRKICQTIAFLSPAVCMTLS--SIDLGL-P--------------------------HWEIV--GILTAGLALSSFALSG  456 (535)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~--------------------------~~~~~--~~~~~g~~~~~~~~~~  456 (535)
                        |+. +..+++....+..+.  ...... +                          .+.+.  ..+++|.+.-......
T Consensus       333 --r~~-~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~  409 (488)
T KOG2325|consen  333 --RRI-ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTAL  409 (488)
T ss_pred             --cee-eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchH
Confidence              111 112212222221111  110000 0                          00001  1122233322223335


Q ss_pred             hhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCCC
Q 009409          457 LYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKP  528 (535)
Q Consensus       457 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (535)
                      .+...+...|.+++++.|++...+..+..++|.+...+....| +...+.+..+.+++...+.....++.++
T Consensus       410 ~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~~l~~~~~~r~~~  480 (488)
T KOG2325|consen  410 DTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVAALWIVFLKRLVP  480 (488)
T ss_pred             HHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5566677899999999999999999999999999999999885 7777766666555555554444444433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.63  E-value=1.1e-13  Score=138.05  Aligned_cols=362  Identities=17%  Similarity=0.133  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCcc-chhHHHHHH----HHHHHhhhccchhhhcccCCchhhHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSS-VAGLVQSSF----FWGYALSQLPGGWLAKIFGGRKVLQTGVL  187 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~s~~----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (535)
                      +.......+-.|..++......+..+.....++.+.. ..+......    .+...+..+..|.++||+|||..+....+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            4556666666666666666666666666666554322 223333333    56777889999999999999999999988


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhcc--CCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc
Q 009409          188 IWSLATALLPLLAGFMPGLVLSRVLVGIGE--GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN  265 (535)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  265 (535)
                      ...+..+... +.. +|.++    +.|+..  +.......++++|....++|...+|+.+.....+..++|.+++++.+.
T Consensus       101 ~~~l~~~~~~-~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen  101 GTILPALCLL-FQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHHhHHHHH-HHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            8777765553 333 23333    444433  355677888999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHH-HhhhcccCCCCCCCCC-CcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHH
Q 009409          266 LGWESVFYIFGLLGIAWFS-GFKILQEGETSNGATL-APRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY  343 (535)
Q Consensus       266 ~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  343 (535)
                      .|.-.+|++..+..++..+ ...++||+..++.+.. ..++.........     +..+...  .....-.+|..+.+.+
T Consensus       175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS-----HVADAFQ--SLTKVGPDRLLLLLLL  247 (463)
T ss_pred             cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch-----hhhhhhh--hhcccCCCccchHHHH
Confidence            9999999998888766554 4445555544333321 1100000000000     0000000  0011112344555444


Q ss_pred             HHHHHhhhhHHHHH-hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHH-HHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 009409          344 AHFCGSWGHYTCLS-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA-QFADNLIATGVETTMVRKICQTIAFLSP  421 (535)
Q Consensus       344 ~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~  421 (535)
                      ..++.......-.. .++.|+...++++..+.+.+.+..+....++..+.. .+...++.+         ....++...-
T Consensus       248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~---------~~i~lGl~~~  318 (463)
T KOG2816|consen  248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK---------RLISLGLLSE  318 (463)
T ss_pred             HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hHhhHHHHHH
Confidence            44444333332212 446778888999999999999999999999888877 566666644         2444555555


Q ss_pred             HHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      .+....+.+.. ..+..+...+. ........+.........++++++|++.++...+..+...++|.+.+.++..+
T Consensus       319 ~~~~~~~af~~-~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  319 FLQLLLFAFAT-ETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHHHHHHhc-cchhhhHHHHH-HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            55555544432 22333333333 33334456666667777789999999999999999999999999999887543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.58  E-value=7.8e-14  Score=140.27  Aligned_cols=348  Identities=16%  Similarity=0.144  Sum_probs=215.1

Q ss_pred             HhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccC-----CchhhHHHHHHHHHHHHHHHhhhh---hhhH
Q 009409          134 SVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG-----GRKVLQTGVLIWSLATALLPLLAG---FMPG  205 (535)
Q Consensus       134 ~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~~---~~~~  205 (535)
                      ....|.+.+++|+++.+...+.++..+...+ .++.|.++|-+.     ||+.++++.++..++.+.++....   +...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            4446678899999999999988888888754 678899999863     555556666665444444443333   4566


Q ss_pred             HHHHHHHhhhccCCchhhHHHHhhhccc--ccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHH
Q 009409          206 LVLSRVLVGIGEGVSPSAATDLIARSIP--LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (535)
Q Consensus       206 l~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~  283 (535)
                      ..++.++..+|.+.......+.+.|...  ++++|...+.......+|.+++..++|.+.+..++++.|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            7777888899999999999999999883  34578889999999999999999999999999999999999988877766


Q ss_pred             HHhhhcccCCCCCCCCCC---cchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHH-HHHHHhhhhHHHHHhh
Q 009409          284 SGFKILQEGETSNGATLA---PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIY-AHFCGSWGHYTCLSWL  359 (535)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~  359 (535)
                      +..+++.++++.......   .++.........++.         ...+.+.++.+.+|...+ ..++............
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~  239 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQ---------LSELWRALQQRAIWQPILFFIFFFNLPPSISSASS  239 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccE
Confidence            555555554221111100   000000000000000         112356677787777665 3333222211110100


Q ss_pred             HHHHHHHhC---CChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh-hhc----
Q 009409          360 PTYFSEELS---LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS-SID----  431 (535)
Q Consensus       360 p~~l~~~~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----  431 (535)
                      -.+..+..+   +++...+.+..+..++.++|..+..+    +..++.    .|+......++.....+.-. ...    
T Consensus       240 fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~----~~~~~~----~R~~~~~t~~~~~~~~l~~~~lv~~~n~  311 (433)
T PF03092_consen  240 FYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRK----YFSNWS----WRRIFVVTTLVSVLASLFDLLLVTRWNL  311 (433)
T ss_pred             EEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCC----HHHHHHHHHHHHHHHhcccEEEEEEEee
Confidence            001122345   88888887776666666665555444    333221    24443333333222222111 110    


Q ss_pred             ---CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          432 ---LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       432 ---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                         .++.+..+.-.++..........+......+..|+...|+.+++..++.++|..++..++..+.+..+
T Consensus       312 ~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  312 DLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             eeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               01111112222334444444556666778888999999999999999999999999999999988765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=9.4e-15  Score=138.48  Aligned_cols=188  Identities=18%  Similarity=0.118  Sum_probs=152.9

Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc--CC
Q 009409          102 YWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GG  178 (535)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~  178 (535)
                      .|+...+.--+.+.+.++++++++.++.+..+.-+.|. +.|..|+|..++++..++|-++...|.+++|+++||+  ||
T Consensus       240 ~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr  319 (448)
T COG2271         240 AWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR  319 (448)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence            34444444445678889999999999999999999888 6677899999999999999999999999999999995  66


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhh-HHHHH
Q 009409          179 RKVLQTGVLIWSLATALLPLLAG--FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAG  255 (535)
Q Consensus       179 r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g  255 (535)
                      |....+...+....+++....++  ++....++.++.|+..-+..........|..|++..|++.|+...+..+ |.+++
T Consensus       320 R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a  399 (448)
T COG2271         320 RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALA  399 (448)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhc
Confidence            66655544443333434334444  3578888999999998888888888889999999999999999999999 99999


Q ss_pred             hhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          256 LLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       256 ~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      ....+++.+.+||...|++..+.++++.+....+
T Consensus       400 ~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         400 GLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             CCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888776665544444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.55  E-value=2.7e-14  Score=143.86  Aligned_cols=162  Identities=18%  Similarity=0.228  Sum_probs=129.5

Q ss_pred             hhhHhhhhhhhcccCCCc--------cchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhh-
Q 009409          131 VNLSVAIIPMSHRFGWNS--------SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-  201 (535)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~--------~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-  201 (535)
                      .......+.+.++.|.+.        .+.+...++..++..++.++.|+++||+|+|+++.++.++.+++..+.....+ 
T Consensus       225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~  304 (418)
T TIGR00889       225 QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE  304 (418)
T ss_pred             HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            334455566666666543        66799999999999999999999999999999999999988887655543222 


Q ss_pred             --hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHH-HhhhhHHHHHhhhHHHhccc------cchhHHH
Q 009409          202 --FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIEN------LGWESVF  272 (535)
Q Consensus       202 --~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~------~gw~~~f  272 (535)
                        +++.+++.+++.|++.+...+....++.+++|+++|++++|+.+ ...++|.++||+++|++.++      +||++.|
T Consensus       305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f  384 (418)
T TIGR00889       305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMW  384 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHH
Confidence              23556778999999998888888999999999999999999997 67889999999999999987      4699999


Q ss_pred             HHHHHHHHHHH-HHhhhcccC
Q 009409          273 YIFGLLGIAWF-SGFKILQEG  292 (535)
Q Consensus       273 ~~~~~~~~~~~-~~~~~~~~~  292 (535)
                      ++.+++.++.. +..++++++
T Consensus       385 ~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       385 LFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHHHhCCc
Confidence            98888766554 444444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.53  E-value=2.2e-12  Score=121.30  Aligned_cols=249  Identities=16%  Similarity=0.126  Sum_probs=174.1

Q ss_pred             HHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhH
Q 009409          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPG  205 (535)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (535)
                      ...+...-+|+.-.+.+++|++..+++.+....+....+..++.|.++||+|||+..++.+++++++++.-  ..++++.
T Consensus        46 a~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k--~~~~~~~  123 (354)
T PF05631_consen   46 AMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK--HSSNYPV  123 (354)
T ss_pred             HHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--hccccHH
Confidence            33444555666556667899999999999999999999999999999999999999999999998888653  5677899


Q ss_pred             HHHHHHHhhhccCCchhhHHHHhh-hc----ccccchhhHHHHHH-HhhhhHHHHHhhhHHHhccccch--hHHHHHHHH
Q 009409          206 LVLSRVLVGIGEGVSPSAATDLIA-RS----IPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGW--ESVFYIFGL  277 (535)
Q Consensus       206 l~~~~~~~G~~~~~~~~~~~~~~~-~~----~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw--~~~f~~~~~  277 (535)
                      ++++|++.|++.+....+..+++. |.    +|++..+..++... ..+++-.+.+.+++.++.+..+.  ..+|....+
T Consensus       124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~  203 (354)
T PF05631_consen  124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV  203 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence            999999999999999888887664 32    23233344444444 33455566677777777776554  778888777


Q ss_pred             HHHHHHHHh-hhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHH
Q 009409          278 LGIAWFSGF-KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (535)
Q Consensus       278 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (535)
                      +.++..+.. ...+|+...........+.   .                ...++.+.+||+++.+.++..+.-...|.+.
T Consensus       204 ~l~~~~~~I~~~W~ENyg~~~~~~~~~~~---~----------------~~a~~~i~~d~ril~LG~~qslFE~smy~FV  264 (354)
T PF05631_consen  204 LLAVAAVLILKTWPENYGDTSSSSSLSGS---F----------------REAWRAILSDPRILLLGLIQSLFEGSMYLFV  264 (354)
T ss_pred             HHHHHHHHHHhcccccCCCcccccchHHH---H----------------HHHHHHHHcCchhHHHHHHHHHHHHHHHHhe
Confidence            665554433 3444543322111000000   0                0124677889999999999999988888875


Q ss_pred             H-hhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 009409          357 S-WLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN  398 (535)
Q Consensus       357 ~-~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr  398 (535)
                      . |.|..-.   +-...-.|++++.+.++.++|+.+..++..+
T Consensus       265 flWtPaL~~---~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  265 FLWTPALDP---DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             eeeeceecC---CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5 5555441   1123347889999999999988887765553

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.53  E-value=2.7e-13  Score=139.88  Aligned_cols=172  Identities=12%  Similarity=0.097  Sum_probs=129.6

Q ss_pred             HHHHhhhhhhHhhhhhhh-cccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHH-HH-hhh
Q 009409          124 VICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LP-LLA  200 (535)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~-~~~  200 (535)
                      +......+.+..++|.+. +++|++..+.++..+...++..++.+++|+++||+|||+.+.++.++..++... .. ..+
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  339 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS  339 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            334445555666777755 668999888888888888999999999999999999999988877654433322 11 123


Q ss_pred             hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-chhHHHHHHHHHH
Q 009409          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLG  279 (535)
Q Consensus       201 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~~~~~  279 (535)
                      ++...+++++++.|++.+...+....++.+.+|++.|++++|+.+....+++.++|.+.+++.+.. +|+..+++..+.+
T Consensus       340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~  419 (490)
T PRK10642        340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA  419 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            445667788888888777666777888889999999999999866666777889999999988764 4787777777777


Q ss_pred             HHHHHHhhhcccCCCC
Q 009409          280 IAWFSGFKILQEGETS  295 (535)
Q Consensus       280 ~~~~~~~~~~~~~~~~  295 (535)
                      ++.++..+++||+++.
T Consensus       420 ~i~~~~~~~~pes~~~  435 (490)
T PRK10642        420 VIGLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHHHhccccCC
Confidence            7666666777876654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.53  E-value=2e-13  Score=136.91  Aligned_cols=159  Identities=16%  Similarity=0.111  Sum_probs=127.8

Q ss_pred             hhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 009409          131 VNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLS  209 (535)
Q Consensus       131 ~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  209 (535)
                      ..+....|. +.+++|.+..+.+++.+...+...++.+++|+++||+|||+.+..+.+...+..... ...++.+.+++.
T Consensus       233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~  311 (393)
T PRK15011        233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM-LMAHSPAILLGL  311 (393)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHH
Confidence            334455665 456789999999999888888888899999999999999998887766554444333 345666677788


Q ss_pred             HHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       210 ~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      +++.+++.+...+....+..|.+| ++|++++++++....+|..++|.++|.+.+..||+..|++.+++.++.++..++.
T Consensus       312 ~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        312 QLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            888888777777777788888887 5699999999999999999999999999999999999998888877777766666


Q ss_pred             cc
Q 009409          290 QE  291 (535)
Q Consensus       290 ~~  291 (535)
                      ++
T Consensus       391 ~~  392 (393)
T PRK15011        391 KD  392 (393)
T ss_pred             cC
Confidence            53

>PRK10054 putative transporter; Provisional

Probab=99.50  E-value=1.2e-12  Score=131.05  Aligned_cols=176  Identities=13%  Similarity=0.102  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      +.++.+.+..++...+.+....++|.|+++.+|++..+.|++.+...++.++++++.|+++||+|+|+         ...
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~---------~~~   77 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR---------YML   77 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch---------hHH
Confidence            45677778888888888999999999999889999999999999999999999999999999998752         222


Q ss_pred             HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      ++.+...+...+.... ++....++...+.+.+.+...+....+..+..++++|+++.|+.+...++|.+++|.++|.+.
T Consensus        78 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         78 LAITAFASGFIAIPLV-NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333322 222333333344454444445555566677788999999999999999999999999999988


Q ss_pred             cccCcchHHHHHHHHHHHHHHHhhhhhc
Q 009409          496 DSTHSWSMSLFAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~  523 (535)
                      + . +|...|.+.+++.++..++..+..
T Consensus       157 ~-~-g~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        157 M-Q-SINLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             H-h-ccCcHHHHHHHHHHHHHHHHHHHH
Confidence            6 4 488888877766665544444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.50  E-value=3.6e-13  Score=142.28  Aligned_cols=139  Identities=12%  Similarity=0.034  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcc
Q 009409          153 LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (535)
Q Consensus       153 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~  232 (535)
                      +...+..++.+++.++.|+++||+|||++++++.++.+++.++++ +.++...+++++++.|++.+..++...++++|++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~-~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS-FGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            335566688899999999999999999999999999888887775 4444567778888889888888899999999999


Q ss_pred             cccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccCC
Q 009409          233 PLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (535)
Q Consensus       233 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  293 (535)
                      |.+.|++++|+..+...+|.++||++++.+.+. +...+|++.+++.++..++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999988764 466788888877777666677777644

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.50  E-value=1.6e-13  Score=136.72  Aligned_cols=154  Identities=16%  Similarity=0.117  Sum_probs=127.2

Q ss_pred             hhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhh-hhhHHH
Q 009409          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-FMPGLV  207 (535)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  207 (535)
                      .........+.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++.....+ +...++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T TIGR00890       220 SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFL  299 (377)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHH
Confidence            3333444555667889999999999999999999999999999999999999999988887777765543222 122344


Q ss_pred             HHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHH
Q 009409          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (535)
Q Consensus       208 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  282 (535)
                      +..++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       300 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       300 ATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            567788888888888888899999999999999999999999999999999999999999999999988776654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.50  E-value=8.1e-14  Score=117.63  Aligned_cols=134  Identities=29%  Similarity=0.508  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccc
Q 009409          155 QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL  234 (535)
Q Consensus       155 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~  234 (535)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++.. ..++++.+.+.+++.|++.+...+....++.|.+|+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   82 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP   82 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence            4456778889999999999999999999999888887776664 456678889999999999999999999999999999


Q ss_pred             cchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      ++|++.+++.+....+|..++|.+++.+.+..+|++.|++.+++.++..+...++
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999888776655544444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.50  E-value=7.4e-13  Score=133.23  Aligned_cols=161  Identities=20%  Similarity=0.141  Sum_probs=131.6

Q ss_pred             hhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009409          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (535)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (535)
                      .....++|.+.++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+.+++..
T Consensus       233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  309 (399)
T PRK05122        233 GTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMALIGA  309 (399)
T ss_pred             HHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHH
Confidence            3444555555556665  3456777888899999999999999999999999988888777776654 455667778889


Q ss_pred             HHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcc
Q 009409          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (535)
Q Consensus       211 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  290 (535)
                      ++.|++.+...+.....+.+.+|+++|++++++++....+|..++|++.|++.+..||++.|++.+++.++..+....++
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999888888888889999999999999999999999999999999999999999999998888777766666665


Q ss_pred             cCCC
Q 009409          291 EGET  294 (535)
Q Consensus       291 ~~~~  294 (535)
                      ++++
T Consensus       390 ~~~~  393 (399)
T PRK05122        390 RRAP  393 (399)
T ss_pred             cccc
Confidence            5443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.48  E-value=2.8e-11  Score=117.15  Aligned_cols=336  Identities=14%  Similarity=0.087  Sum_probs=221.9

Q ss_pred             hhhhhcc-cCCCccchh-HHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 009409          137 IIPMSHR-FGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVG  214 (535)
Q Consensus       137 ~~~~~~~-~g~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  214 (535)
                      .|.+.+. .|++..|+. -+.-...-.+.+..++...+.|..|.|++++++.+...+...++ .+.++...+-+..++.|
T Consensus        27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll-l~~~sv~~mq~~q~~yg  105 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL-LFGTSVLAMQLMQFFYG  105 (412)
T ss_pred             hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHCcHHHHHHHHHHHH
Confidence            4445554 788888774 45555556677788899999999999999999988866666555 57788899999999999


Q ss_pred             hccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc--ccchhHHHHHHHHHHHHHHHHhhhcccC
Q 009409          215 IGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--NLGWESVFYIFGLLGIAWFSGFKILQEG  292 (535)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~  292 (535)
                      ++.+. ..+..+++-...++++-.++.+...++..+|..++.++|-.+..  ..+++...++......+.++..+++|.+
T Consensus       106 ~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  106 LATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99765 56778888888898999999999999999999999999988775  4457777777666666667777778776


Q ss_pred             CCCCCCCCCcch----h---hhhhhhhhhhh--HHHhccCCC----------CCcHHHhhhcHHHHHHHHHHHHHhhhhH
Q 009409          293 ETSNGATLAPRS----N---YINMKKSLSAS--LEEMGESLK----------DVPWKAIFRSKAVWAMIYAHFCGSWGHY  353 (535)
Q Consensus       293 ~~~~~~~~~~~~----~---~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~  353 (535)
                      ++.....+....    .   ....++....+  .++..+..+          ...+++..++|.++.-.+-+.+..++++
T Consensus       185 ~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~  264 (412)
T PF01770_consen  185 KRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYY  264 (412)
T ss_pred             CcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHH
Confidence            543221111100    0   00000000000  000000000          1124556678988888888888899999


Q ss_pred             HHHHhhHHHHHHH--hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          354 TCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       354 ~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      .+.++......+.  -+-....-|.+-+...+.+.++.+..|++..++.+.       .........++.+.++++... 
T Consensus       265 qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm~~-  336 (412)
T PF01770_consen  265 QVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLMSF-  336 (412)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHHHH-
Confidence            9888888888654  133444557788888888888888889885444321       222223333333333333332 


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV  482 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  482 (535)
                      .++.+...++.++.+.............++.....|..|.++|+++++..+
T Consensus       337 t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  337 TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence            344455555666666555555555555667778888889999888876544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03545 putative arabinose transporter; Provisional

Probab=99.47  E-value=1.1e-12  Score=131.57  Aligned_cols=152  Identities=18%  Similarity=0.094  Sum_probs=122.3

Q ss_pred             hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 009409          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIG  216 (535)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~  216 (535)
                      .|.+.++.|.+..+.+++.+...++..++.++.|++.||+|+|+.. .+..+..++..+.....++.+.++++.++.|++
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3445666899999999999999999999999999999999988654 444444444433333456667778888999998


Q ss_pred             cCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcc
Q 009409          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQ  290 (535)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~  290 (535)
                      .+...+.....+.+..| ++|++++|+++....+|..+||+++|.+.++.|++..|++.+++.++..+......
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            87777777788888766 78999999999999999999999999999999999999999888776655544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.46  E-value=2e-13  Score=138.27  Aligned_cols=147  Identities=12%  Similarity=0.049  Sum_probs=124.3

Q ss_pred             cccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCch
Q 009409          142 HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSP  221 (535)
Q Consensus       142 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~  221 (535)
                      .+.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+ +.++.+.+++.+++.|++.+...
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHH
Confidence            34466777889999999999999999999999999999999998888888776664 56667788889999999988877


Q ss_pred             hhHHHHhhhcccccchhhHHHH-HHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          222 SAATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       222 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      +....++.+.+|++.++...+. ++....+|.+++|.++|++.+..||+..|++.+++.++..++....
T Consensus       334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  402 (420)
T PRK09528        334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFT  402 (420)
T ss_pred             HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999998888887665 6777889999999999999999999999999888876655444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.46  E-value=7.6e-13  Score=135.80  Aligned_cols=174  Identities=15%  Similarity=0.068  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      +..+++..++.+........+.|. +.+++|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~  339 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT  339 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            344555555566666667777886 4567999999999999999999999999999999999999887765544433322


Q ss_pred             HHH-hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhh-HHHHHhhhHHHhcc--------
Q 009409          195 LLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIE--------  264 (535)
Q Consensus       195 ~~~-~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~--------  264 (535)
                      +.. ...++...+.+.+++.|++.............|.+|++.+|++.|+.+...++ |.+++|.+.|++.+        
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~  419 (467)
T PRK09556        340 LGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPI  419 (467)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccc
Confidence            221 12344455667888888654444434446677999999999999999999886 77999999999999        


Q ss_pred             ----ccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          265 ----NLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       265 ----~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                          ..||+..|++.+++.++..+..+.+
T Consensus       420 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        420 FGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence                5789999999877776655544443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.46  E-value=1.1e-12  Score=130.87  Aligned_cols=164  Identities=16%  Similarity=0.014  Sum_probs=139.4

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (535)
                      .+..++.......+....|.+.+++|.+..++|++.+...++..++.++++++.||+|+|+.+.++.++.++...+.+ .
T Consensus       211 l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~  289 (382)
T TIGR00902       211 LAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-A  289 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-h
Confidence            344444555566666677777788999999999999999999999999999999999999999999999888887765 5


Q ss_pred             hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHH-HhhhhHHHHHhhhHHHhccccchhHHHHHHHHH
Q 009409          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL  278 (535)
Q Consensus       200 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  278 (535)
                      .++.+.+++.+++.|+..+...+....++.+. |+++|++.+++++ ...++|.++||.++|++.++.|+ ..|++.+++
T Consensus       290 ~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~  367 (382)
T TIGR00902       290 IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAII  367 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence            77778889999999999999999999999988 8889999999986 46789999999999999999997 667777777


Q ss_pred             HHHHHHHh
Q 009409          279 GIAWFSGF  286 (535)
Q Consensus       279 ~~~~~~~~  286 (535)
                      .++.++..
T Consensus       368 ~~~~~~~~  375 (382)
T TIGR00902       368 AAAAFFLI  375 (382)
T ss_pred             HHHHHHHH
Confidence            66554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=4.6e-13  Score=135.21  Aligned_cols=159  Identities=19%  Similarity=0.167  Sum_probs=127.3

Q ss_pred             hhhhhHhhhhhhhcccCCCcc----chhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhh
Q 009409          129 DKVNLSVAIIPMSHRFGWNSS----VAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMP  204 (535)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  204 (535)
                      ......+.++.+.++.+.+..    ..+.+.++..++..++.+++|++.||+|||+.+..+.++..++.+... ..++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~  312 (408)
T PRK09874        234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPL  312 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHH
Confidence            334455556665555433333    245666677788888999999999999999999988887766665543 445667


Q ss_pred             HHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHH
Q 009409          205 GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFS  284 (535)
Q Consensus       205 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~  284 (535)
                      .+++.+++.|++.+...+...+.+.+..+++++++.++++.....+|..+||.++|.+.+..||++.|++.+++.++..+
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  392 (408)
T PRK09874        313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV  392 (408)
T ss_pred             HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            78889999999999999999999989899899999999999999999999999999999999999999999888776655


Q ss_pred             Hhhh
Q 009409          285 GFKI  288 (535)
Q Consensus       285 ~~~~  288 (535)
                      ....
T Consensus       393 ~~~~  396 (408)
T PRK09874        393 YSWN  396 (408)
T ss_pred             HHHH
Confidence            5444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.45  E-value=1.4e-12  Score=128.41  Aligned_cols=166  Identities=28%  Similarity=0.359  Sum_probs=145.0

Q ss_pred             HHHHHHhhhhhhHhhhhhhhccc-CCCccchhHHHHHHHHHHHhhhccchhhhcccCCch-hhHHHHHHHHHHHHHHHhh
Q 009409          122 AFVICNMDKVNLSVAIIPMSHRF-GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRK-VLQTGVLIWSLATALLPLL  199 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~  199 (535)
                      ..+........+....|.+.++. |.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+... .
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  261 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-L  261 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-H
Confidence            34445556666677777766654 999999999999999999999999999999999999 99999888888887765 5


Q ss_pred             hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHH
Q 009409          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLG  279 (535)
Q Consensus       200 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~  279 (535)
                      .++.+.+++..++.|++.+...+....++.+..|+++|++.+++.+....+|..++|.+.+.+.+..+|++.|++.+++.
T Consensus       262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~  341 (352)
T cd06174         262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA  341 (352)
T ss_pred             hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence            55568888999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhh
Q 009409          280 IAWFSGFKI  288 (535)
Q Consensus       280 ~~~~~~~~~  288 (535)
                      ++..+....
T Consensus       342 ~i~~i~~~~  350 (352)
T cd06174         342 LLAALLLLL  350 (352)
T ss_pred             HHHHHHhee
Confidence            776655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.45  E-value=8.8e-13  Score=133.03  Aligned_cols=161  Identities=23%  Similarity=0.085  Sum_probs=129.1

Q ss_pred             hhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 009409          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (535)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (535)
                      .....+..+.|.+.++.|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++.. ..++.+.+.
T Consensus       234 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  312 (406)
T PRK11551        234 IVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGML  312 (406)
T ss_pred             HHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHHH
Confidence            3344455567888888999999999999999999999999999999999999998887666555555443 344556677


Q ss_pred             HHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-chhHHHHHHHHHHHHHHHHh
Q 009409          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAWFSGF  286 (535)
Q Consensus       208 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~  286 (535)
                      +..++.|++.+...+...+++.+.+|+++|++.+|+.+....+|..+||.++|++.++. +|...+++.+...++..+..
T Consensus       313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            77888888888888888999999999999999999999999999999999999998875 46666666655555544444


Q ss_pred             hhc
Q 009409          287 KIL  289 (535)
Q Consensus       287 ~~~  289 (535)
                      +.+
T Consensus       393 ~~~  395 (406)
T PRK11551        393 LLL  395 (406)
T ss_pred             HHH
Confidence            444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.44  E-value=2.6e-12  Score=128.05  Aligned_cols=155  Identities=15%  Similarity=0.150  Sum_probs=126.1

Q ss_pred             hHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 009409          133 LSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRV  211 (535)
Q Consensus       133 ~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  211 (535)
                      .....|. +.+++|.+..+.+++.+...+...++.++.|++.||+|||+++.++.++..+..... ...++.+.+++.++
T Consensus       218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  296 (375)
T TIGR00899       218 YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL-AADNSLWALLMLQL  296 (375)
T ss_pred             HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            3344455 457789999999999888877788889999999999999999888776655544443 24456677778888


Q ss_pred             HhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       212 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      +.|++.+...+....++.|..| +++++++++++....+|..++|.++|.+.+..||+..|++.+++.++..+...++
T Consensus       297 ~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       297 LNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            9999888888888888889887 5677999999999999999999999999999999999999888877766655544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.43  E-value=4e-12  Score=127.54  Aligned_cols=157  Identities=20%  Similarity=0.196  Sum_probs=129.1

Q ss_pred             hhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 009409          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (535)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (535)
                      .......+.|.+.++.|.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++.. ..++.+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  307 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVALA  307 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHHHH
Confidence            3334455556655666654  356677778888889999999999999999999998888777776654 4566677788


Q ss_pred             HHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhh
Q 009409          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (535)
Q Consensus       209 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  288 (535)
                      +.++.|++.+...+...+.+.+.+++++|++++|+++....+|..++|.+++++.++.||++.|++.+++.++..+....
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            89999999988888888888999999999999999999999999999999999999999999999998877666555443

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=1.9e-12  Score=129.89  Aligned_cols=171  Identities=13%  Similarity=0.181  Sum_probs=134.5

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhh-cccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (535)
                      +.+..++.......+..+.|.+. +++|++..+.+++.+.+.++..++.++.|+++||+++|+.+.....+..+...+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~  289 (394)
T PRK03699        210 LAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence            33444444445556667778765 66899999999999999999999999999999999999998887776655554442


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                       ..++...+.+..++.|++.+...+...++..+..+ +++++..+.......+|..++|.+.|++.+..||+..+++.++
T Consensus       290 -~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~  367 (394)
T PRK03699        290 -NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANG  367 (394)
T ss_pred             -HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHH
Confidence             44555566677788898888788887777777666 5567888999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhhccc
Q 009409          278 LGIAWFSGFKILQE  291 (535)
Q Consensus       278 ~~~~~~~~~~~~~~  291 (535)
                      +.++..+....+++
T Consensus       368 ~~~~~~~~~~~~~~  381 (394)
T PRK03699        368 LYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87766555555444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.42  E-value=7.4e-12  Score=125.44  Aligned_cols=166  Identities=14%  Similarity=0.040  Sum_probs=127.3

Q ss_pred             HHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhh
Q 009409          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  201 (535)
                      .+++..........+.|.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+.++..+..++..+.....+
T Consensus       213 ~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~  292 (393)
T PRK09705        213 YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL  292 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc
Confidence            33344455556666777777779999999999999999999999999999999999999998887776666554432333


Q ss_pred             hhhHHHHHHHHhhhccCCchhhHHHHhhhccc-ccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-hhHHHHHHHHHH
Q 009409          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLLG  279 (535)
Q Consensus       202 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~  279 (535)
                      +...+  ..++.|++.+...+.......+.++ ++++++.+|+.+....++..++|.+.|++.+..| |+..|++.++..
T Consensus       293 ~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~  370 (393)
T PRK09705        293 QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV  370 (393)
T ss_pred             hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            32222  2346688888888877777777774 5789999999999999999999999999999876 788888877766


Q ss_pred             HHHHHHhhhc
Q 009409          280 IAWFSGFKIL  289 (535)
Q Consensus       280 ~~~~~~~~~~  289 (535)
                      ++..+....+
T Consensus       371 ~~~~~~~~~~  380 (393)
T PRK09705        371 VGLMIITLRF  380 (393)
T ss_pred             HHHHHHHHHh
Confidence            6554444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.42  E-value=3.5e-12  Score=127.42  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=126.8

Q ss_pred             hhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009409          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (535)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (535)
                      .....++|.+.++.|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+..  . .. .......
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~-~~-~~~~~~~  292 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L-SQ-AAMAPAL  292 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h-hh-HHHHHHH
Confidence            344456787777889999999999999999999999999999999999999988877776665443  2 22 3344567


Q ss_pred             HHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       211 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      ++.|++.....|...+.+.|..|+++++...+......++|.++||.++|++.++.||++.|++.+.+.++..+..+..
T Consensus       293 ~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        293 FILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            7788877778899999999999888888888888889999999999999999999999999999888776655444433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.42  E-value=2.9e-12  Score=128.48  Aligned_cols=168  Identities=14%  Similarity=0.064  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhh-hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchh--hHH------HHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKV--LQT------GVL  187 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--~~~------~~~  187 (535)
                      ....+..+........+....|.+ .+++|.+..+.+++.+...++..++.+++|+++||+|||+.  ...      +.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL  297 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            334445555566666677777764 56689999999999999999999999999999999999961  111      111


Q ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc
Q 009409          188 IWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (535)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (535)
                      +.++...... ..++....+...++.+++. ...+...+++.|.+|+++|++++++.+....+|..++|.+.+++.+..|
T Consensus       298 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       298 VLSLLMFATN-YVNIPYAALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHHHHHHHhc-cchhHHHHHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            1111111111 1223233333334444444 4788999999999999999999999999999999999999999999988


Q ss_pred             -hhHHHHHHHHHHHHHHHHh
Q 009409          268 -WESVFYIFGLLGIAWFSGF  286 (535)
Q Consensus       268 -w~~~f~~~~~~~~~~~~~~  286 (535)
                       |++.|++.+++.++..+..
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       376 SFAGALMVVAALALIGALSY  395 (399)
T ss_pred             chhHHHHHHHHHHHHHHHHH
Confidence             9999999888776655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.42  E-value=5.8e-13  Score=133.53  Aligned_cols=164  Identities=15%  Similarity=0.125  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhhh-cccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH-H
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT-A  194 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~  194 (535)
                      ....+..+.............|.+. +++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..+.. .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (394)
T TIGR00883       222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP  301 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            3344444455555566666777755 7789999999999999999999999999999999999998876554443333 1


Q ss_pred             HHHhh--hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHH-HHhhhhHHHHHhhhHHHhccccc-hhH
Q 009409          195 LLPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLG-WES  270 (535)
Q Consensus       195 ~~~~~--~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~g-w~~  270 (535)
                      +....  .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++. .....+|..++|.++|.+.++.| |++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~  381 (394)
T TIGR00883       302 LLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYA  381 (394)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchh
Confidence            21112  244556667788889888888899999999999999999999984 55667899999999999999888 888


Q ss_pred             HHHHHHHHHH
Q 009409          271 VFYIFGLLGI  280 (535)
Q Consensus       271 ~f~~~~~~~~  280 (535)
                      .++...+..+
T Consensus       382 ~~~~~~~~~l  391 (394)
T TIGR00883       382 IGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHHH
Confidence            8777665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.41  E-value=1.6e-11  Score=123.90  Aligned_cols=176  Identities=13%  Similarity=0.133  Sum_probs=125.1

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHH-HHcCCCchhHHHHH
Q 009409          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL-IATGVETTMVRKIC  413 (535)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~~~~  413 (535)
                      .+.++.+....+...+.+|++..++|.|+++.+|++..+++.+.........++.+++|+++||+ |+|        + .
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr--------r-~   78 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR--------M-A   78 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH--------H-H
Confidence            35667777777888889999999999999988999999999999999999999999999999999 754        2 2


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc--chhHHHHHHHHhhhhhhhHHHHHH
Q 009409          414 QTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE--YASILLGITNTVGAVPGIVGVALT  491 (535)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~igp~i~  491 (535)
                      ..++.+...+...+............+...+..++.+...+.......+.+|++  +|.++.++.+...++|+.++|.+.
T Consensus        79 iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~  158 (493)
T PRK15462         79 VMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC  158 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence            233333333333222221111222333333344444544454455666767765  699999999999999999999999


Q ss_pred             HHHhcccCcchHHHHHHHHHHHHHHHhhhh
Q 009409          492 GYLLDSTHSWSMSLFAPSIFFYLTGTIVWL  521 (535)
Q Consensus       492 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  521 (535)
                      |++.+..| |...|.+.++..++ +++.+.
T Consensus       159 g~L~~~~G-w~~~F~iaaigm~l-~li~~~  186 (493)
T PRK15462        159 GYAQEEYS-WAMGFGLAAVGMIA-GLVIFL  186 (493)
T ss_pred             HHHHhhhC-hHHHHHHHHHHHHH-HHHHHH
Confidence            99999874 99999886654433 333333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.41  E-value=3.7e-12  Score=129.44  Aligned_cols=172  Identities=14%  Similarity=0.019  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhhh-cccCCCccchhHHHHHHHHHHHhhhccchhhhccc--CCchhh-HHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVL-QTGVLIWSLAT  193 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~-~~~~~~~~~~~  193 (535)
                      .+.+..+........+..+.|.+. +++|++..+.++..+.+.++..++.+++|+++||+  ++|+.. ....+...+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~  326 (434)
T PRK11663        247 LLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSV  326 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHH
Confidence            334444445555556666777755 67899999999999999999999999999999998  333332 22111111111


Q ss_pred             HHHH-hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          194 ALLP-LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       194 ~~~~-~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      .... ....+...+.+..+..|++...........+.|.+|+++|++++|+.+....+|.+++|.+.|++.++.||+..|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f  406 (434)
T PRK11663        327 GSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFF  406 (434)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHH
Confidence            1111 112222333344455555433333334456788899899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 009409          273 YIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~~~  289 (535)
                      ++.+++.++..+.....
T Consensus       407 ~~~~~~~~~~~~~~~~~  423 (434)
T PRK11663        407 VVISIAAGISALLLLPF  423 (434)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99988877665544433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.41  E-value=2e-12  Score=130.78  Aligned_cols=161  Identities=19%  Similarity=0.119  Sum_probs=132.5

Q ss_pred             hhHhhhhhhhcc-cCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009409          132 NLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (535)
Q Consensus       132 ~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (535)
                      .+....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++.. ..++.+.+.++.
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~  319 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILAVLCL  319 (417)
T ss_pred             hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHHHHHH
Confidence            345567776666 899999999999999999999999999999998888888888777777765553 556666777888


Q ss_pred             HHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHH-HHHhhhc
Q 009409          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW-FSGFKIL  289 (535)
Q Consensus       211 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~-~~~~~~~  289 (535)
                      ++.|++.+...+...+++.+..|++.|++++|++.....+|..+||.+.|.+.+..|++..+++.+++.++. .+....+
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            899998887777788899999998999999999999999999999999999999999999998887766554 4444444


Q ss_pred             ccCC
Q 009409          290 QEGE  293 (535)
Q Consensus       290 ~~~~  293 (535)
                      ++.+
T Consensus       400 ~~~~  403 (417)
T PRK10489        400 GELR  403 (417)
T ss_pred             cccc
Confidence            5444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.41  E-value=1.4e-11  Score=126.08  Aligned_cols=169  Identities=10%  Similarity=0.093  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH--hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHcCCCchhHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE--LSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKI  412 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~  412 (535)
                      +.++.+.+..++..++++++..++|.|+++.  +|++..+++.+.....++..++.+++|+++|| +|+|         .
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~---------~   80 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK---------K   80 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH---------H
Confidence            4566677778888899999999999999877  89999999999999999999999999999999 7864         3


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc---chhHHHHHHHHhhhhhhhHHHH
Q 009409          413 CQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE---YASILLGITNTVGAVPGIVGVA  489 (535)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~igp~  489 (535)
                      .+..+.+..++...+.... ++.....++.++.+++.+...+.......+.++++   +|+++.++.+...++|..+||.
T Consensus        81 ~l~~~~~~~~~g~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~  159 (475)
T TIGR00924        81 TMVLGGIVLMLGHFMLAMS-IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPL  159 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhc-ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHH
Confidence            3344444444444444332 23334445556677777666666666666666654   4888999999999999999999


Q ss_pred             HHHHHhcccCcchHHHHHHHHHHHHH
Q 009409          490 LTGYLLDSTHSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       490 i~G~l~~~~g~~~~~~~~~~~~~~~~  515 (535)
                      ++|++.+..| |...|.+.++..+++
T Consensus       160 l~g~l~~~~g-~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       160 LAGVIAENYG-YHVGFNLAAVGMVIG  184 (475)
T ss_pred             HHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence            9999999874 999998877544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.41  E-value=1.3e-12  Score=133.44  Aligned_cols=176  Identities=13%  Similarity=0.033  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhhhc-ccCCCccchhHHHHHHHHHHHhhhccchhhhccc--CCchhhH-HHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQ-TGVLIWSLAT  193 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~~~~~~~  193 (535)
                      ...+..++.+........++|.+.+ +.|++..+.+++.+.+.++..++.+++|+++||+  +||+... ....+..++.
T Consensus       257 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~  336 (452)
T PRK11273        257 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            3344444444444556667888555 4799999999999999999999999999999999  5554332 2222223332


Q ss_pred             HHHHhh-hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHH-HhhhHHHhccccchhHH
Q 009409          194 ALLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVA-GLLLAPPIIENLGWESV  271 (535)
Q Consensus       194 ~~~~~~-~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~gw~~~  271 (535)
                      ++.... .++.+..+++.++.|.+..........+..|.+|+++||+++|+.+....+|..+ +|.++|++.+..||+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~  416 (452)
T PRK11273        337 IVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG  416 (452)
T ss_pred             HHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHH
Confidence            222111 2233344445555565433333334456779999999999999999888887654 79999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCC
Q 009409          272 FYIFGLLGIAWFSGFKILQEGE  293 (535)
Q Consensus       272 f~~~~~~~~~~~~~~~~~~~~~  293 (535)
                      |++.++.+++.++....+...+
T Consensus       417 f~~~~~~~~~~~~~~~~~~~~~  438 (452)
T PRK11273        417 FMVMIGGSILAVILLIVVMIGE  438 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            9998887776665555554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=2.3e-12  Score=133.63  Aligned_cols=149  Identities=16%  Similarity=0.151  Sum_probs=117.1

Q ss_pred             hhHhhhhhhh-cccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh-hhhhhHHHHH
Q 009409          132 NLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGLVLS  209 (535)
Q Consensus       132 ~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~  209 (535)
                      .....+|.+. +++|.+..+.+++.+...++..++.+++|+++||+|||+++..+.++..+..++.... ..+.+.+.+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            3456677766 5899999999999999999999999999999999999999888876655554433222 2333334444


Q ss_pred             HHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHH
Q 009409          210 RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (535)
Q Consensus       210 ~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~  280 (535)
                      .++.++......+...+++.+.+|+++|++.+++.+....+|..+||+++|.+.+.+||+..++..++...
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~  443 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT  443 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence            55554444445566778889999999999999999999999999999999999999999988877665443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=7.7e-12  Score=120.43  Aligned_cols=176  Identities=17%  Similarity=0.140  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      ++...+....+........+++.-|.+.+..|+|.+.++++.-.|.++..+|.++.|+++|| +.|+.+.....+.++..
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~  290 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL  290 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence            44444444444444445556666788888999999999999999999999999999999999 99999999988888888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFY  273 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~  273 (535)
                      +.+.+..++.+..++.-++.|+............+++ ..++.+..+.+++....++|..+|..++|.+.+++|+....+
T Consensus       291 l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~  369 (394)
T COG2814         291 LALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGW  369 (394)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            8877777877777788888888888777777777777 445899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccc
Q 009409          274 IFGLLGIAWFSGFKILQE  291 (535)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~  291 (535)
                      +.+++.++.++..+....
T Consensus       370 ~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         370 VGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999988777666554433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.39  E-value=4.1e-12  Score=130.95  Aligned_cols=177  Identities=16%  Similarity=0.102  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      ++.+...++..+...........+.|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            44555555555555555566667788888899999988899999999999999999999999999999999988777776


Q ss_pred             HHHHHhh----hh------hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh
Q 009409          193 TALLPLL----AG------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (535)
Q Consensus       193 ~~~~~~~----~~------~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (535)
                      .++....    .+      +...+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555411    11      2222333333333333334466677889999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          263 IENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       263 ~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      .++.+|++.|++.++++++..+...++
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHhee
Confidence            999999999999888877665555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.39  E-value=4.3e-12  Score=127.65  Aligned_cols=168  Identities=14%  Similarity=0.122  Sum_probs=126.8

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhH-HHHHHHHHHHHHHHh
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-TGVLIWSLATALLPL  198 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~  198 (535)
                      .+..+...........+.|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+....
T Consensus       228 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       228 GMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3444445555566677788888889999999999999999999999999999999999988764 333333333222211


Q ss_pred             h----hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHH
Q 009409          199 L----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYI  274 (535)
Q Consensus       199 ~----~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~  274 (535)
                      .    .++.+.+++..++.|++.+...+ ....+.+..| ++|++++|+.+....+|..++|.+++.+.+..||+..|++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~  385 (402)
T TIGR00897       308 IPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWI  385 (402)
T ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            1    23455667788888888776544 3456666554 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 009409          275 FGLLGIAWFSGFKIL  289 (535)
Q Consensus       275 ~~~~~~~~~~~~~~~  289 (535)
                      .+++.++..+...++
T Consensus       386 ~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       386 FAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            988876655554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.38  E-value=1.1e-12  Score=133.86  Aligned_cols=162  Identities=18%  Similarity=0.172  Sum_probs=127.7

Q ss_pred             HHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc--CCchhhHHH--HHHHHHHHHHH
Q 009409          121 LAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTG--VLIWSLATALL  196 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~--~~~~~~~~~~~  196 (535)
                      +..++..+.......++|.+.+++|.+..+.+++.++..++..++++++|+++||.  ++|+...++  .++.+++.++.
T Consensus       248 ~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~  327 (455)
T TIGR00892       248 SGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC  327 (455)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555667777788999999999999999999999999999999984  334333332  23333333333


Q ss_pred             HhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-chhHHHHHH
Q 009409          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIF  275 (535)
Q Consensus       197 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~  275 (535)
                       ...++++.+++.+++.|++.+...+...+++.|.+|++++++.+|+++....+|.++||.++|.+.+.. +|++.|++.
T Consensus       328 -~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~  406 (455)
T TIGR00892       328 -ALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYAS  406 (455)
T ss_pred             -HHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHh
Confidence             345667788889999999999999999999999999999999999999999999999999999999877 599999998


Q ss_pred             HHHHHHHH
Q 009409          276 GLLGIAWF  283 (535)
Q Consensus       276 ~~~~~~~~  283 (535)
                      +++.++..
T Consensus       407 ~~~~li~~  414 (455)
T TIGR00892       407 GSIVVSAG  414 (455)
T ss_pred             hHHHHHHH
Confidence            88765543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.38  E-value=2.3e-11  Score=120.00  Aligned_cols=166  Identities=19%  Similarity=0.244  Sum_probs=129.0

Q ss_pred             HHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Q 009409          342 IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP  421 (535)
Q Consensus       342 ~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  421 (535)
                      .+..++...........+|.++.+++|.+..+.+++.+...++..++.++.|+++||+|+|         .....+.+..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~l~~~~~~~   72 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR---------RVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH---------HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------eeEeehhhhh
Confidence            3455666666677778888677778999999999999999999999999999999999865         2444444444


Q ss_pred             HHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcc
Q 009409          422 AVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSW  501 (535)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  501 (535)
                      ++...+..+. .+.+..++..++.|++.+...+.....+.+..++++|++++|+.+....+|..++|.+++.+.+.. +|
T Consensus        73 ~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~  150 (352)
T PF07690_consen   73 ALGSLLLAFA-SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GW  150 (352)
T ss_dssp             HHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HH
T ss_pred             hhHHHHhhhh-hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-cc
Confidence            4442222222 334466677778888888888888888888899999999999999999999999999999999776 48


Q ss_pred             hHHHHHHHHHHHHHHHh
Q 009409          502 SMSLFAPSIFFYLTGTI  518 (535)
Q Consensus       502 ~~~~~~~~~~~~~~~~~  518 (535)
                      ...|++.+++.++..++
T Consensus       151 ~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhh
Confidence            88888888777766554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.38  E-value=4e-11  Score=120.40  Aligned_cols=173  Identities=13%  Similarity=0.154  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 009409          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF  418 (535)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  418 (535)
                      +.+....++...+.+.+..++|.|+++.+|.+..+.|++.+...+...+.+++.|+++||+++|         .....+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k---------~~l~~~~   83 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK---------PMIVTGM   83 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch---------HHHHHHH
Confidence            4555777788888888999999999888999999999999999999999999999999999864         2333344


Q ss_pred             HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          419 LSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      ....+....... .++.++.++..++.|++.+...+.....+.+..++++++++.|+.+...++|..+||.++|++. ..
T Consensus        84 ~~~~~~~~~~~~-~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~  161 (400)
T PRK11646         84 LMRAAGFATMAI-AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY  161 (400)
T ss_pred             HHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            444444443333 2344455566666777766666666667777789999999999999999999999999999999 44


Q ss_pred             CcchHHHHHHHHHHHHHHHhhhhhc
Q 009409          499 HSWSMSLFAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       499 g~~~~~~~~~~~~~~~~~~~~~~~~  523 (535)
                       +|...|++.+++.++..++.....
T Consensus       162 -g~~~~f~~~~~~~~~~~i~~~~~~  185 (400)
T PRK11646        162 -DFRLVCATGAVLFVLAAAFNAWLL  185 (400)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhC
Confidence             488888877665555544443333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.37  E-value=5.3e-11  Score=122.57  Aligned_cols=175  Identities=11%  Similarity=0.092  Sum_probs=124.3

Q ss_pred             HhhhcH-HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHcCCCchh
Q 009409          331 AIFRSK-AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTM  408 (535)
Q Consensus       331 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~  408 (535)
                      +.+++| .++......++..+++|.+..++|.|+++.+|++..+++.+............+++|+++|| +|+|      
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r------   88 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK------   88 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH------
Confidence            344665 58888888899999999999999999999999999998877776665555556789999999 4864      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcc--hhHHHHHHHHhhhhhhhH
Q 009409          409 VRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY--ASILLGITNTVGAVPGIV  486 (535)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i  486 (535)
                         .....+.++..+...+.....+......++.++.+++.+...+.......+.+++++  ++.+.++.+...++|..+
T Consensus        89 ---~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~  165 (500)
T PRK09584         89 ---RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF  165 (500)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence               233344444443333333322222334445556677766666666566666666543  456888999999999999


Q ss_pred             HHHHHHHHhcccCcchHHHHHHHHHHHHH
Q 009409          487 GVALTGYLLDSTHSWSMSLFAPSIFFYLT  515 (535)
Q Consensus       487 gp~i~G~l~~~~g~~~~~~~~~~~~~~~~  515 (535)
                      +|.++|++.+..| |...|.+.++..+++
T Consensus       166 gp~i~g~l~~~~g-~~~~F~i~~i~~~i~  193 (500)
T PRK09584        166 SMLATPWLAAKYG-WSVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHHHHHHHhhC-HHHHHHHHHHHHHHH
Confidence            9999999999884 999998866544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.36  E-value=2.6e-12  Score=129.47  Aligned_cols=146  Identities=11%  Similarity=0.111  Sum_probs=117.8

Q ss_pred             hhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 009409          130 KVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (535)
Q Consensus       130 ~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (535)
                      ........|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++.........++.+.+.+
T Consensus       254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (405)
T TIGR00891       254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGL  333 (405)
T ss_pred             HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            3344445555 556789999999999999999999999999999999999999988877653333332223445455666


Q ss_pred             HHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-hhHHHHHH
Q 009409          209 SRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIF  275 (535)
Q Consensus       209 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~  275 (535)
                      ..++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|+++|++.++.| |+..+...
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       334 GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            66777877777778888999999999999999999999999999999999999999988 88766653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.36  E-value=3.4e-12  Score=132.25  Aligned_cols=175  Identities=12%  Similarity=0.051  Sum_probs=116.1

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcccCCCccchhH------------HHHHHHHHHHhhhccchhhhcccCCchhhHHHHH
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL------------VQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVL  187 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (535)
                      ....+...+..+......|.+.++.|.+..+.+.            ...+..++..++.+++++++||+|||++++++..
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~  373 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Confidence            3334433334444455578877888887653321            1233445566688889999999999999988887


Q ss_pred             HHHHHHHHHHhhhh---hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc
Q 009409          188 IWSLATALLPLLAG---FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (535)
Q Consensus       188 ~~~~~~~~~~~~~~---~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (535)
                      +.+++..+.+...+   ....+...-+...++.....+..+.+.+|.+|.+.|++++|+.+....+|.+++|.+.+++.+
T Consensus       374 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       374 ILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence            77766655543221   111122221222222233446677788999999999999999999999999999999999887


Q ss_pred             c----------cchhHHHHHHHHHHHHHHHHhhhcccCCC
Q 009409          265 N----------LGWESVFYIFGLLGIAWFSGFKILQEGET  294 (535)
Q Consensus       265 ~----------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  294 (535)
                      .          .++...|++.+++.++..+..+++||++.
T Consensus       454 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       454 HGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence            3          34566788887777666555566666443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09952 shikimate transporter; Provisional

Probab=99.36  E-value=1e-11  Score=126.31  Aligned_cols=167  Identities=14%  Similarity=0.102  Sum_probs=119.7

Q ss_pred             HHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh--h-
Q 009409          125 ICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL--A-  200 (535)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~-  200 (535)
                      ...........+.|. +.+++|.+......+..+..+...++.+++|+++||+|||+++..+.++..++.+.....  . 
T Consensus       261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
T PRK09952        261 CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333444445555565 456788888766666666677778888999999999999999888866654443322111  1 


Q ss_pred             hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHh-hhhHHHHHhhhHHHhcccc--chhHHHHHHHH
Q 009409          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENL--GWESVFYIFGL  277 (535)
Q Consensus       201 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~--gw~~~f~~~~~  277 (535)
                      ++...+++..++.|++.+...+..++++.|.+|.+.|+...++.+.. ..+|+.++|.+.+++.+..  +|+..+.+.++
T Consensus       341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~  420 (438)
T PRK09952        341 SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLA  420 (438)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            23334445566677887777888899999999999999999986544 4589999999999998743  48888888877


Q ss_pred             HHHHHHHHhhhccc
Q 009409          278 LGIAWFSGFKILQE  291 (535)
Q Consensus       278 ~~~~~~~~~~~~~~  291 (535)
                      +.++..+..+.+++
T Consensus       421 ~~~i~~v~~~~~~~  434 (438)
T PRK09952        421 GCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHHccc
Confidence            77776666665544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.35  E-value=6.7e-11  Score=121.19  Aligned_cols=168  Identities=11%  Similarity=0.115  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHcCCCchhHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMVRKICQ  414 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~~~~~~  414 (535)
                      +.++.+....+...+++|+...+++.|+++.+|++..+++.+...+.....+..+++|+++|| +|+|         ...
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r---------~~~   84 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK---------RTI   84 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH---------HHH
Confidence            567777788888899999999999999999999999999888888887788888899999999 8865         333


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc--chhHHHHHHHHhhhhhhhHHHHHHH
Q 009409          415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPE--YASILLGITNTVGAVPGIVGVALTG  492 (535)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~igp~i~G  492 (535)
                      ..+.++..+...............+++..+.+++.+...+.....+.+.+|++  +|+.+.++.+...++|..+||.++|
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            34444433333333332222223335566677777777777777788878776  4578999999999999999999999


Q ss_pred             HHhcccCcchHHHHHHHHHHH
Q 009409          493 YLLDSTHSWSMSLFAPSIFFY  513 (535)
Q Consensus       493 ~l~~~~g~~~~~~~~~~~~~~  513 (535)
                      ++.+..| |.+.|++.++...
T Consensus       165 ~l~~~~g-w~~~F~i~~i~~~  184 (489)
T PRK10207        165 VIADKFG-YSVTYNLCGAGLI  184 (489)
T ss_pred             HHHHhhC-hHHHHHHHHHHHH
Confidence            9999985 9999988655333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.33  E-value=6.8e-11  Score=121.67  Aligned_cols=156  Identities=12%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             hhhhhcccCCCccchhHHHH-HHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH---HhhhhhhhHHHHHHHH
Q 009409          137 IIPMSHRFGWNSSVAGLVQS-SFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRVL  212 (535)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~  212 (535)
                      .|.+.+++|++..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.++..++.   ....++...+.+..++
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34456779999999999974 6668999999999999999999988777665544443222   1112343344445566


Q ss_pred             hhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccC
Q 009409          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEG  292 (535)
Q Consensus       213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~  292 (535)
                      ..++.+...+...++..+..+++.+++.+++.+....+|..+++.++|++.+..||+..|.+.+++++..++....++++
T Consensus       326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555566788888899988999999999999999999999999999999999999999888887776666665543

>PRK10504 putative transporter; Provisional

Probab=99.33  E-value=1.5e-10  Score=119.26  Aligned_cols=177  Identities=14%  Similarity=0.141  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      +.+|.+.+..++.....+.+..++|.+.+ .+|.++.+.+++.+...++..++.++.|+++||+|+|       +  ...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r-------~--~~~   79 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR-------N--IFF   79 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-------H--HHH
Confidence            46777778888888888888999999996 4899999999999888899999999999999999875       2  222


Q ss_pred             HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      .+.+..+++...... ..+....++..++.|++.+...+.......+..++++++++.|+.+...++|..++|.++|.+.
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         80 TAIVLFTLGSLFCAL-SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            223333333333222 2344455666777888877777777777777788999999999999999999999999999999


Q ss_pred             cccCcchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          496 DSTHSWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      +.. +|...|.+...+..+..++.....+
T Consensus       159 ~~~-gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        159 EYA-SWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             hhc-cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            987 4998998876655555554444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.32  E-value=8.4e-12  Score=123.93  Aligned_cols=196  Identities=17%  Similarity=0.068  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCc
Q 009409          100 ASYWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR  179 (535)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r  179 (535)
                      ..-++.+++...|+...+.+.+....+..+.+.+..+...+.++.|++..++-++.....+...+..+++..+.||+|||
T Consensus       256 ~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR  335 (485)
T KOG0569|consen  256 ISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR  335 (485)
T ss_pred             CcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            33444455556667766676777777777777788888889999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhh---hhh--h---HHHHHHHHhhhccC-CchhhHHHHhhhcccccchhhHHHHHHHhhhh
Q 009409          180 KVLQTGVLIWSLATALLPLLA---GFM--P---GLVLSRVLVGIGEG-VSPSAATDLIARSIPLEERSRAVSFVFGGLSF  250 (535)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~---~~~--~---~l~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  250 (535)
                      +.++++..++.+..+++....   +..  |   ..+++.++..++.+ +.-|..+-+.+|.+|++.|+.++++......+
T Consensus       336 pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~  415 (485)
T KOG0569|consen  336 PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWL  415 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHH
Confidence            999999988887776654321   111  1   12334444333333 23578889999999999999999999999999


Q ss_pred             HHHHHhhhHHHhccccchhHHHHHHHHHHH-HHHHHhhhcccCCCCC
Q 009409          251 GSVAGLLLAPPIIENLGWESVFYIFGLLGI-AWFSGFKILQEGETSN  296 (535)
Q Consensus       251 g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~-~~~~~~~~~~~~~~~~  296 (535)
                      +..+-......+.+.+|- +.|++..+.++ ..+..+..+||++.+.
T Consensus       416 ~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  416 SNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            999999888888888776 56666666554 4456777788876544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.32  E-value=1.1e-10  Score=115.85  Aligned_cols=171  Identities=15%  Similarity=0.064  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      .+.+..++...+.......+|.|..+ .+.+..+.+++.+...++.+++.++.|+++||+|+|         .....+.+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~~~~~~~   72 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK---------KVMIGADL   72 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh---------HHHHHHHH
Confidence            34556667777777778888988865 699999999999999999999999999999999875         22222222


Q ss_pred             HHHHHHHHhhhcC----CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          420 SPAVCMTLSSIDL----GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       420 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      ...+...+.....    .+.+..++..++.|++.+...+.......+..++++|+++.|+.+....+|..++|.+++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        73 IRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222111111    134455566677788877777777778888889999999999999999999999999999999


Q ss_pred             cccCcchHHHHHHHHHHHHHHHhhhh
Q 009409          496 DSTHSWSMSLFAPSIFFYLTGTIVWL  521 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~~~~~~~~~~~~  521 (535)
                      +.. +|...|.+.++..++..+..+.
T Consensus       153 ~~~-g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       153 ATL-GIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHh-hHHHHHHHHHHHHHHHHHHHHh
Confidence            887 4888887766655554444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.29  E-value=1.6e-11  Score=122.47  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCC-chhhHH-HHHHHHHHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGG-RKVLQT-GVLIWSLAT  193 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~-r~~~~~-~~~~~~~~~  193 (535)
                      ..+.+..+........+....|. +.+++|.+..+.++..+.+.++..++.++.|++.||..+ |+.... .........
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  298 (379)
T TIGR00881       219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS  298 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            34444445555555556666666 456689999999999999999999999999999998643 332222 111111111


Q ss_pred             HHHHhh--hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          194 ALLPLL--AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       194 ~~~~~~--~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      +.....  ..+....+++.++.|+......+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.++.||++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       299 LLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            111111  233345566677778766666666778889999999999999999999999999999999999999999876


Q ss_pred             H
Q 009409          272 F  272 (535)
Q Consensus       272 f  272 (535)
                      |
T Consensus       379 f  379 (379)
T TIGR00881       379 F  379 (379)
T ss_pred             C
Confidence            4

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.29  E-value=3.4e-11  Score=114.72  Aligned_cols=175  Identities=22%  Similarity=0.204  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      ...+++.|+..+.+.-.++..+|. +.+++|.+..+.|...+.+.+...+..+.+|+++||+|.+|+..+....++++..
T Consensus       220 ~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~  299 (417)
T COG2223         220 TWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAA  299 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHH
Confidence            335677777777777788888888 7788999999999999999999999999999999999999999999888888887


Q ss_pred             HHHhhh------hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-
Q 009409          195 LLPLLA------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-  267 (535)
Q Consensus       195 ~~~~~~------~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-  267 (535)
                      +.....      .+....++..+..+++.+.........+...++ ++-|.+.|+..+.+.+|+..-|...+...+..| 
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            776554      333333333333344444444456677777787 688999999999999999999999999998887 


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhccc
Q 009409          268 WESVFYIFGLLGIAWFSGFKILQE  291 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~~~~~~~~~  291 (535)
                      +...|++...+.+++.+.......
T Consensus       379 ~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         379 YTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888877765555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.29  E-value=4.7e-11  Score=119.28  Aligned_cols=154  Identities=17%  Similarity=0.099  Sum_probs=124.5

Q ss_pred             HhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHH
Q 009409          127 NMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGL  206 (535)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (535)
                      ......+....|.+.++.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+ ..++.+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~  296 (382)
T PRK11128        218 QGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWL  296 (382)
T ss_pred             HHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence            33344444555666678999999999999999999999999999999999999999999888877766654 56777888


Q ss_pred             HHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHH-HhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHH
Q 009409          207 VLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWF  283 (535)
Q Consensus       207 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~  283 (535)
                      ++..++.|++.+...+....++.+. +++++++.++... ....+|..+||.++|.+.+.+|+ ..|+..+++.++.+
T Consensus       297 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        297 IVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            8899999999998888888888886 5567788899886 55678889999999999999988 46666666655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.28  E-value=3.9e-10  Score=113.69  Aligned_cols=175  Identities=13%  Similarity=0.056  Sum_probs=126.8

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      ...+.+++...-...+....| .+++++|.+..+.|++.+...++..++.+..|++.||+|+|         .....+.+
T Consensus        12 ~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r---------~~~~~~~~   81 (412)
T TIGR02332        12 FLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR---------RWIAGIMV   81 (412)
T ss_pred             HHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH---------HHHHHHHH
Confidence            334444444444445555566 66678999999999999999999999999999999999975         23334444


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc--
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS--  497 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~--  497 (535)
                      +..+...+... .++...+++.-++.|++.+...+.....+.+.+++++|+++.|+.+....+|..+++.+++++.+.  
T Consensus        82 ~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  160 (412)
T TIGR02332        82 LWGIASTATMF-ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG  160 (412)
T ss_pred             HHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44444443333 334555666677888888877766666677778889999999999999999999999999998752  


Q ss_pred             ---cCcchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          498 ---THSWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       498 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                         ..+|+..|.+.++..++..++.++..++
T Consensus       161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence               1259999998777666655555555443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.28  E-value=6.4e-08  Score=96.94  Aligned_cols=273  Identities=11%  Similarity=0.002  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCC-----CccchhHHHHHHHHHHHhh-hccchhhhcccCCchhhHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW-----NSSVAGLVQSSFFWGYALS-QLPGGWLAKIFGGRKVLQTGVL  187 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~  187 (535)
                      +-++.+.+.+|+..+..+..-    .+.+.+.+     +...+.++.+...+...+. .++.+++++|++|++++-+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILR----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            334344444544444444433    35555554     3467889998888877766 8999999999999999888777


Q ss_pred             HHHHHHHHHHhh----hhh--------------------------hhHHHHHHHHhhhccCCchh-hHHHHhhhcccccc
Q 009409          188 IWSLATALLPLL----AGF--------------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEE  236 (535)
Q Consensus       188 ~~~~~~~~~~~~----~~~--------------------------~~~l~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~  236 (535)
                      .+....+++++.    .+.                          .|...+......+....... ..++++.|.++.+|
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            666665554433    011                          12333444455555555555 78899999999999


Q ss_pred             hhhHHHHHHHhhhhHHHHHhhhHHHhccc--------cchh----HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcch
Q 009409          237 RSRAVSFVFGGLSFGSVAGLLLAPPIIEN--------LGWE----SVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRS  304 (535)
Q Consensus       237 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~gw~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (535)
                      -.+-.+++..+.++|.++++.+..++.+.        ..|.    ..+.+.++..++...+...+.+....++.... .+
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~  241 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYN-PA  241 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc-hh
Confidence            99999999999999999999998887631        1242    23344444444444444444332211111000 00


Q ss_pred             hhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhh----HHHHHhh
Q 009409          305 NYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE----AAWVSIL  380 (535)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~----~g~~~~~  380 (535)
                      +...         ++..+..-...++.++++|.++.+.+...+++.....+....-..+.+.+- ++.+    .|.+...
T Consensus       242 ~~~~---------k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~  311 (472)
T TIGR00769       242 LKEK---------KVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTW  311 (472)
T ss_pred             hccc---------cCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence            0000         000000112346788999999988888888777766666555555655543 3322    2334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 009409          381 PPLASVLVTSIAAQFADNLIA  401 (535)
Q Consensus       381 ~~~~~~~~~~~~g~l~dr~~~  401 (535)
                      .++..++..++.+++.+|+|-
T Consensus       312 ~gi~tl~~~l~~~~l~~~~Gw  332 (472)
T TIGR00769       312 TGVVSVTMMLLSGNVIRKYGW  332 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhhH
Confidence            555565666667888888874

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=3.2e-11  Score=122.59  Aligned_cols=150  Identities=15%  Similarity=0.071  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcc-cCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHH-HH
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL-LP  197 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~  197 (535)
                      ++..+........+..+.|.+.++ +|++..+.++....+.++..++.+++|+++||+|||+++..+.++..+.... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            333444455555667778886554 8999999999988999999999999999999999999988765543322211 11


Q ss_pred             h--hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhh-hhHHHHHhhhHHHhccccchh
Q 009409          198 L--LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL-SFGSVAGLLLAPPIIENLGWE  269 (535)
Q Consensus       198 ~--~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~~~~~l~~~~gw~  269 (535)
                      .  ..+++..+.+..++.|++.+...+....++.|.+|++.|+..+++..... .+++.++|.+.+++.+..|++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            1  12232333344555566666666667788899999999999999965544 456788999999999988864

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.27  E-value=6.9e-10  Score=114.71  Aligned_cols=176  Identities=11%  Similarity=0.062  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 009409          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIA  417 (535)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  417 (535)
                      +..+.+..++...-...+...+|.+.. .+|.+..+.+++.+.+.++..++.+..|+++||+|+|         .....+
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~-~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk---------~~l~~~   77 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSM-TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK---------RLLMLG   77 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHH
Confidence            344556666666666677888898875 6899999999999999999999999999999999865         333344


Q ss_pred             HHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-CCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          418 FLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDI-SPEYASILLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      .++..+...+... .++....+++-++.|++.+...+.....+.+.+ ++++|+++.|+......+|..+||.++|.+.+
T Consensus        78 ~~~~~~~~~~~~~-a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         78 GTLFGLASLAAAF-SPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4444443333333 344555666667788877766665555555555 67899999999999999999999999999999


Q ss_pred             ccCcchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          497 STHSWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       497 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      .. +|++.|++...+.++..++.+...++
T Consensus       157 ~~-gwr~~f~i~~~~~~~~~~l~~~~l~~  184 (495)
T PRK14995        157 HF-YWGSVFLINVPIVLVVMGLTARYVPR  184 (495)
T ss_pred             cC-ChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            87 59999988776666555555444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.26  E-value=5.3e-10  Score=112.02  Aligned_cols=157  Identities=13%  Similarity=0.097  Sum_probs=118.4

Q ss_pred             HhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009409          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (535)
Q Consensus       348 ~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (535)
                      .....+.....+|.+. +.+|.++.+.++..+...++..+++++.|++.||+|+|         .....+.++.++...+
T Consensus        32 ~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr---------~~~~~~~~~~~~~~~~  101 (394)
T PRK10213         32 LIIVEFLPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR---------YVVILFAVLLTLSCLL  101 (394)
T ss_pred             HHHHHHHHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH---------HHHHHHHHHHHHHHHH
Confidence            3334445555677766 46899999999999999999999999999999999864         3333444444444333


Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHH
Q 009409          428 SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFA  507 (535)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~  507 (535)
                      ... .++....++..++.|++.+...+.....+.+.+++++|+++.++.....++|..++|.+++.+.+.. +|+..|++
T Consensus       102 ~~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~  179 (394)
T PRK10213        102 VSF-ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNA  179 (394)
T ss_pred             HHH-HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHH
Confidence            333 2445555666677888877777777777778889999999999999999999999999999999988 49999988


Q ss_pred             HHHHHHHHH
Q 009409          508 PSIFFYLTG  516 (535)
Q Consensus       508 ~~~~~~~~~  516 (535)
                      .+++.++..
T Consensus       180 ~~~l~~~~~  188 (394)
T PRK10213        180 AAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHH
Confidence            766554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.26  E-value=3e-10  Score=113.59  Aligned_cols=174  Identities=15%  Similarity=0.050  Sum_probs=124.2

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      ......++...........+|.+. +.+|.+..+.+++.+...++..++.++.|++.||+|+|         .....+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r---------~~~~~~~~   78 (385)
T TIGR00710         9 LLGCLSILGPLGIDMYLPAFPEIA-ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR---------PVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHH
Confidence            333344444445555556677665 56899999999999999999999999999999999865         22223333


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      ...+....... .++....++..++.|++.+...+.......+..++++|+++.|+.+....+|..++|.++|.+.+.. 
T Consensus        79 ~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  156 (385)
T TIGR00710        79 IFALSSLGLAL-SNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-  156 (385)
T ss_pred             HHHHHHHHHHH-HccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence            33333333332 2334445555667777777666777777778788999999999999999999999999999999987 


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          500 SWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      +|...+.+.+++.++..++.+...++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       157 SWHAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            48888887776665555555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.26  E-value=1.3e-10  Score=111.97  Aligned_cols=160  Identities=11%  Similarity=0.057  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhhhc---ccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPMSH---RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      +.+..+..|+.......+..+.+.+.+   .+|++..+.++..+.+..++.++.++.+++.||+|+|+++.++..+..++
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~  221 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            333444554444455566666676554   36999999999999999999999999999999999999988887776666


Q ss_pred             HHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHH
Q 009409          193 TALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF  272 (535)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  272 (535)
                      .++.. ..+. ......-++.|++.+..+|...+...+..++ +.+.+.++. ....+|.+++|++.|.+.+..|.+..|
T Consensus       222 ~~l~~-~~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~  297 (310)
T TIGR01272       222 SIGAA-LTHG-YVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAF  297 (310)
T ss_pred             HHHHH-HcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHH
Confidence            64443 3333 2233466688999999999999999888874 456667775 567799999999999999999999998


Q ss_pred             HHHHHHH
Q 009409          273 YIFGLLG  279 (535)
Q Consensus       273 ~~~~~~~  279 (535)
                      ++..+..
T Consensus       298 ~v~~~~~  304 (310)
T TIGR01272       298 ALPVPCY  304 (310)
T ss_pred             HHHHHHH
Confidence            8654443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.26  E-value=1.6e-10  Score=116.87  Aligned_cols=180  Identities=17%  Similarity=0.128  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCc--hhhHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVLIW  189 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~  189 (535)
                      .+.+....+++++..-+.+++... ...-.+++|++..+...+.-+..+..++|.+++|++.||+|.|  +++.++++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            344445555665555455555444 4445568999999999999999999999999999999999999  8988888887


Q ss_pred             HHHHHHHHhh--------hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHH
Q 009409          190 SLATALLPLL--------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP  261 (535)
Q Consensus       190 ~~~~~~~~~~--------~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  261 (535)
                      .+..+.. .+        .++.+.+.+.-++.|++.|..++..-++.++..|+++.+..+|++....-..+.+||++.+.
T Consensus       360 ~~i~~~g-~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  360 IIIPLYG-LFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHH-HHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555443 33        45557889999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc-hhHHHHHHHHHHHHHHHHhhhcccCC
Q 009409          262 IIENLG-WESVFYIFGLLGIAWFSGFKILQEGE  293 (535)
Q Consensus       262 l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~  293 (535)
                      +.+..| -|+.++...++.++.+++...++.++
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhccchh
Confidence            998876 89999988888777777776665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=1.4e-10  Score=117.91  Aligned_cols=146  Identities=13%  Similarity=0.055  Sum_probs=108.9

Q ss_pred             hhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhh-hhHHHHHH
Q 009409          132 NLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSR  210 (535)
Q Consensus       132 ~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~  210 (535)
                      .+...+|.+.++.|.+..+.+.+.+...++..++.+++|++.||+|||+.+..+.++..+..++.....+. ...+.+..
T Consensus       249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        249 PIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            34556777777789999999999999999999999999999999999999988877765554443222222 12222222


Q ss_pred             HHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       211 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                      +..+++.....+....++.|.+|++.|++++|+......+|..++|.+.+++.+..|+....++...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~  395 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA  395 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            2233333334455667889999999999999999999999999999999999999887655444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.26  E-value=2.2e-08  Score=99.00  Aligned_cols=371  Identities=12%  Similarity=0.031  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhhhcccC-CCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHH---
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWS---  190 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~---  190 (535)
                      ....+.+.++++..+.-++..+.|.+..+.. -+.--.+...-.-.+..+++.+..|.+.||..|.++...+.+.--   
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence            3446677888888888888888888666652 233333334444445666788888999999999998776654321   


Q ss_pred             -HHHHHHHh-hh--h-----h--hhHHHHHHHHhhhccCCchh-hHHHHhhhcc------cccchhhHHHHHHHhhhhHH
Q 009409          191 -LATALLPL-LA--G-----F--MPGLVLSRVLVGIGEGVSPS-AATDLIARSI------PLEERSRAVSFVFGGLSFGS  252 (535)
Q Consensus       191 -~~~~~~~~-~~--~-----~--~~~l~~~~~~~G~~~~~~~~-~~~~~~~~~~------~~~~r~~~~~~~~~~~~~g~  252 (535)
                       +++.+... +.  .     .  ...+++.-.+.|........ ...+.=-||.      +++.+.+..+...-.--+..
T Consensus        83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence             11111111 11  1     1  11122222222221111111 1111112332      34566777888888888999


Q ss_pred             HHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc--------ccCCCCCCCCCCcchhhhh---hhhhhhhhHHHhc
Q 009409          253 VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL--------QEGETSNGATLAPRSNYIN---MKKSLSASLEEMG  321 (535)
Q Consensus       253 ~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  321 (535)
                      +++|++.|.+.+..+.+...++.++..++.++.=.++        |+-..++..+..+..+...   .++..........
T Consensus       163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (432)
T PF06963_consen  163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLW  242 (432)
T ss_pred             HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHH
Confidence            9999999999998899988888887776654332221        1111111110000000000   0000000000000


Q ss_pred             c--CCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 009409          322 E--SLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL  399 (535)
Q Consensus       322 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~  399 (535)
                      +  ......|+..++++.+....-. .+.++...++...+..|+... |+++...|..-....+.++.|.++..++.+|+
T Consensus       243 ~~~~~~~~~w~~Y~~q~vflas~al-alLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri  320 (432)
T PF06963_consen  243 NPLRTIIRGWRTYFRQPVFLASFAL-ALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI  320 (432)
T ss_pred             HHHHHHhccHHHHHhCHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0  0112356677777755544433 333444566778888899765 99999999999999999999999999999999


Q ss_pred             HHcCCCchhHHHHHHHHH--HHHHHHHHHHhhhcCCCc--HHH----HHHHHHHHHHHhhhhhhhhhhhhhccCCcchhH
Q 009409          400 IATGVETTMVRKICQTIA--FLSPAVCMTLSSIDLGLP--HWE----IVGILTAGLALSSFALSGLYCTHQDISPEYASI  471 (535)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  471 (535)
                      |..|       .-...+.  ......+...+ +..+++  ...    +.+..+-=++.-++-.......++.+|+++||+
T Consensus       321 Glvr-------~G~~~l~~q~~~L~~~v~~~-~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~  392 (432)
T PF06963_consen  321 GLVR-------AGLWSLWWQWVCLALCVVSF-WAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGA  392 (432)
T ss_pred             cchh-------hHHHHHHHHHHHHHHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhH
Confidence            8542       1111111  11111111111 222222  111    112222223444455666667778899999999


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          472 LLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       472 ~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      ..|+-+...++...+.-.+ +.+..
T Consensus       393 v~gvq~sl~~lf~ll~~~~-~ii~~  416 (432)
T PF06963_consen  393 VSGVQNSLQSLFELLSFVL-TIIFP  416 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhccC
Confidence            9999999999887765544 44443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.26  E-value=4.2e-10  Score=111.75  Aligned_cols=159  Identities=14%  Similarity=0.147  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 009409          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI  416 (535)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  416 (535)
                      .+|...+..++.....+....+.|.++++.+|++..+.+++.+...++..++.++.|+++||+|+|         .....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence            355666777777777788889999878888999999999999999999999999999999999865         22333


Q ss_pred             HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          417 AFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      +.+...+...+......+....++..++.|++.+. .......+.+..++++|+++.++.....++|..+++.+++.+.+
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33433433333333221334444555666666443 34455566677888999999999998888888888888877665


Q ss_pred             c---------cCcchHHH
Q 009409          497 S---------THSWSMSL  505 (535)
Q Consensus       497 ~---------~g~~~~~~  505 (535)
                      .         ..+|...+
T Consensus       152 ~~~~~~~~~~~~~w~~~~  169 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAF  169 (366)
T ss_pred             HHHhcccccccccccchh
Confidence            2         11477777

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.25  E-value=7.7e-10  Score=111.02  Aligned_cols=179  Identities=9%  Similarity=0.054  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      |-+....+..+....+.......+|.+.+ .+|.+..+.++..+...++..++.++.|+++||+|+|         ....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r---------~~l~   72 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAA-DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK---------PVAI   72 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh---------HHHH
Confidence            34444555566666666666778888775 5799999999999999999999999999999999865         2233


Q ss_pred             HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      .+.+...+...+... .++....++..++.|.+.+.........+.+..++++|+++.|+.+....++..++|.+++.+.
T Consensus        73 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         73 PGAALFIIASLLCSL-AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333332 2333444555566777766666666667777788999999999999999999999999999988


Q ss_pred             cccCcchHHHHHHHHHHHHHHHhhhhhccCC
Q 009409          496 DSTHSWSMSLFAPSIFFYLTGTIVWLAFASS  526 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (535)
                      +.. +|...+.+.+++.++..++.+...+++
T Consensus       152 ~~~-g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        152 LKF-PWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             hCc-ChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            876 588888887766665555544444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.25  E-value=1.1e-10  Score=120.43  Aligned_cols=167  Identities=11%  Similarity=-0.022  Sum_probs=122.6

Q ss_pred             HHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhh-
Q 009409          123 FVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG-  201 (535)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-  201 (535)
                      .+....+.+....+.|.+.++.|.+....++......+...++.+++++++||+|||++++.+.++.+++.+++..... 
T Consensus       280 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        280 VFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             HHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3334444555566778888899999888888888888889999999999999999999999999888887766543211 


Q ss_pred             hh--hHHHHHHHHhhhccCC-chhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh------ccccchhHHH
Q 009409          202 FM--PGLVLSRVLVGIGEGV-SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI------IENLGWESVF  272 (535)
Q Consensus       202 ~~--~~l~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~gw~~~f  272 (535)
                      +.  .....+.++.+++.+. ..|....+++|.+|+++|++++|+......+|.++++.+.+.+      .+..+|++.|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~  439 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSY  439 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHH
Confidence            11  1222333444444333 3367789999999999999999999999999998886665544      4578899999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 009409          273 YIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~~~  289 (535)
                      ++.++++++..+..+++
T Consensus       440 ~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        440 WIYGCMGVLAALFMWKF  456 (479)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99887766655544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.25  E-value=4.7e-10  Score=112.11  Aligned_cols=177  Identities=14%  Similarity=0.174  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      +.++.+.+..++.....+.....+|.+.+ ++|.+..+.+++.+...++..++.++.|++.||+|+|         ....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~   72 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAH-DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK---------HILL   72 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHH-HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH---------HHHH
Confidence            45667777778888888888888988764 6899999999999999999999999999999999864         2333


Q ss_pred             HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          416 IAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      .+.+..++...+... .++....++..++.|++.+...+.......+..++++|+++.|+......+|..++|.+++.+.
T Consensus        73 ~~~~~~~~~~~l~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         73 FLVALCVIGNAMFTL-SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            444444444444333 3345555666677777766655555555666678888999999999999999999999999999


Q ss_pred             cccCcchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          496 DSTHSWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       496 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      +.. +|+..|.+.++..++..+..+...+
T Consensus       152 ~~~-gwr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        152 QEF-SWRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             hhc-cHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            887 4999998877755555444433333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.25  E-value=1.5e-10  Score=113.06  Aligned_cols=180  Identities=12%  Similarity=0.062  Sum_probs=132.7

Q ss_pred             HhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHH
Q 009409          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVR  410 (535)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  410 (535)
                      +++.++.+..+.+...+..++...+.+++=-++++ ++..+..-|...+....+.++.-++.+++.+|+|+-++      
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v------  438 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV------  438 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce------
Confidence            45667777777777777777777788888777764 57777788888888889999999999999999986432      


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhh-hhhhhHHHH
Q 009409          411 KICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIVGVA  489 (535)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~igp~  489 (535)
                         +.+++..-..-++.+.. ..++|..+..-++-|+..+.++.....++....||+.++++.|+..... ++|-.+|++
T Consensus       439 ---~~lgLa~~~~Rf~~~S~-L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl  514 (618)
T KOG3762|consen  439 ---MYLGLACNVGRFLYYSY-LQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL  514 (618)
T ss_pred             ---eeehhhHHHHHHHHHHH-hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence               22333333333333333 4555655666688888899999999999999999999999999988554 889999999


Q ss_pred             HHHHHhcccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          490 LTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       490 i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      ++|.+.+.+| ....|.+.++.+++..++...+
T Consensus       515 IGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  515 IGGFVVERFG-ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             hhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999985 5666666555555444443333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=9.1e-11  Score=120.00  Aligned_cols=158  Identities=20%  Similarity=0.128  Sum_probs=136.0

Q ss_pred             hhhhhHhhhhhhh-cccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHH
Q 009409          129 DKVNLSVAIIPMS-HRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLV  207 (535)
Q Consensus       129 ~~~~~~~~~~~~~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~  207 (535)
                      ....+...+|.+. +++|.+...+|++.+++.+|..++.++.+++.+|+++++++..+.++++++.+.++ +.++.+..+
T Consensus       233 ~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~~~  311 (524)
T PF05977_consen  233 FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWLAL  311 (524)
T ss_pred             hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHHHH
Confidence            3334445577754 56899999999999999999999999999999999999999999998888887775 666778888


Q ss_pred             HHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhh
Q 009409          208 LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFK  287 (535)
Q Consensus       208 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  287 (535)
                      +..++.|++.........+.+....|++.||++++++.+....+..+|.++.|.+.+.+|.+..+.+.++..++..++..
T Consensus       312 ~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  312 IALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999988888999999999999999999999999999999999999999999999999887776555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11043 putative transporter; Provisional

Probab=99.25  E-value=5.9e-10  Score=112.24  Aligned_cols=169  Identities=11%  Similarity=0.005  Sum_probs=116.3

Q ss_pred             HHHHHHHhhhhHHHHHhhHHH--HHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          342 IYAHFCGSWGHYTCLSWLPTY--FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       342 ~l~~~~~~~~~~~~~~~~p~~--l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      .+..+...........+.|.+  +.+.+|.++.+.+++.+...++..++.++.|+++||+++|         ..+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~   79 (401)
T PRK11043          9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK---------PVLLAGLS   79 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc---------HHHHHHHH
Confidence            333333444445555555554  4567899999999999999999999999999999999875         22223333


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      ...+...+... .++.....+..++.|++.+...........+.+++++++.+.+..+....++..++|.++|++.+.. 
T Consensus        80 ~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-  157 (401)
T PRK11043         80 LFALGSLGMLW-VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-  157 (401)
T ss_pred             HHHHHHHHHHH-hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            33333333222 2333444455566666655545544555667788888999999999999999999999999999988 


Q ss_pred             cchHHHHHHHHHHHHHHHhhhh
Q 009409          500 SWSMSLFAPSIFFYLTGTIVWL  521 (535)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~  521 (535)
                      +|...|++.+++.++..++.+.
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        158 GWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH
Confidence            4888888777666555544443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.24  E-value=4e-10  Score=116.56  Aligned_cols=174  Identities=13%  Similarity=0.150  Sum_probs=129.7

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      .+.+..++...........+|.+.+ .+|.+..+.+++.+...++..++.++.|++.||+|+|         .....+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~~~~   75 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAG-DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR---------RLFLISTF   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH---------HHHHHHHH
Confidence            3445555555555667777887775 6899999999999999999999999999999999864         23333333


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      ...+...+... .++....++..++.|++.+...+.....+.+.+++++|+++.|+.+....+|..++|.++|++.+.. 
T Consensus        76 ~~~~~~~~~~~-~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-  153 (485)
T TIGR00711        76 AFTLGSLLCGV-APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-  153 (485)
T ss_pred             HHHHHHHHHhC-cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-
Confidence            33333333333 2345556666777888877777777778888889999999999999999999999999999999987 


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          500 SWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      +|...|++.+.+.++..++.+...++
T Consensus       154 ~w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       154 HWRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             CceehhhhhhHHHHHHHHHHHHHcCC
Confidence            48888887766555555544444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.24  E-value=2.9e-11  Score=123.29  Aligned_cols=149  Identities=16%  Similarity=0.189  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhhcc-cCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (535)
                      +++..++............+.+.++ ++ +..+.+++.++..++..++.+++++++||+|+|+++..+.++.+++.++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  305 (437)
T TIGR00792       227 LCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF  305 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443 44 566778888888999999999999999999999999999888777776654


Q ss_pred             hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhccc-------ccchhhHHHHHHHhhhhHHHHHhhhHHHhccccch
Q 009409          198 LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (535)
Q Consensus       198 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (535)
                      ...++.+.+++..++.|++.+...+...++++|..+       ++.+|..+|+.+....+|..+++.+.|.+.+..||
T Consensus       306 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       306 FAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            433455667778888999999889999999988865       45679999999999999999999999999887666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.24  E-value=1.3e-10  Score=118.19  Aligned_cols=163  Identities=15%  Similarity=0.080  Sum_probs=105.5

Q ss_pred             HhhhhhhHhhhhhh-hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHh-h--hhh
Q 009409          127 NMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL-L--AGF  202 (535)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~--~~~  202 (535)
                      ......+..++|.+ .+++|.+..+.++..++..+...+++++.|+++||+|||+++.++.++.++....... .  .++
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS  335 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            44445566677774 4668999999999999888888899999999999999999887765544333321111 1  122


Q ss_pred             hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhh-HHHHHhhhHHHhccccc-hhHHHHHHHHHHH
Q 009409          203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG-WESVFYIFGLLGI  280 (535)
Q Consensus       203 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~  280 (535)
                      ....+..-.+.+++.+...+....+++|++|++.|++++|+.+....+ .....|.+.+.+ +..| |...+++.++..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHH
Confidence            222222222222333333455677889999999999999998876554 344577877755 4445 6556666666665


Q ss_pred             HHHHHhhhcc
Q 009409          281 AWFSGFKILQ  290 (535)
Q Consensus       281 ~~~~~~~~~~  290 (535)
                      +..+..++++
T Consensus       415 i~~~~~~~l~  424 (432)
T PRK10406        415 VAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHhh
Confidence            5555555443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.23  E-value=6.6e-10  Score=109.82  Aligned_cols=163  Identities=13%  Similarity=0.033  Sum_probs=117.7

Q ss_pred             hhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 009409          350 WGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS  429 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (535)
                      .....+...+|.+.+ ++|.+..+.|++.+...++..++.+..|+++||+|+|        +. ............... 
T Consensus         5 ~~~~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr--------~~-~~~~~~~~~~~~~~~-   73 (368)
T TIGR00903         5 AIWVTFSPVLSLVAE-DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR--------WF-LFGSLATFAAAAGRL-   73 (368)
T ss_pred             HHHHHHHhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--------HH-HHHHHHHHHHHHHHH-
Confidence            344556677777765 6899999999999999999999999999999999854        22 222222222221111 


Q ss_pred             hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHH
Q 009409          430 IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPS  509 (535)
Q Consensus       430 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~  509 (535)
                      ....+....++.-++.|++.+. .........+..|+++|++++++.+....+|..+++.+++.+.+.. +|+..|++.+
T Consensus        74 ~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~  151 (368)
T TIGR00903        74 LDPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIA  151 (368)
T ss_pred             HHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHH
Confidence            1113445566667777777664 3444445567789999999999999999999999999999999887 5999998877


Q ss_pred             HHHHHHHHhhhhhccC
Q 009409          510 IFFYLTGTIVWLAFAS  525 (535)
Q Consensus       510 ~~~~~~~~~~~~~~~~  525 (535)
                      ++.++..++.+...++
T Consensus       152 ~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       152 AVAAAGIILVLAALPA  167 (368)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            7666666655555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00895 2A0115 benzoate transport

Probab=99.23  E-value=6.7e-11  Score=118.80  Aligned_cols=142  Identities=20%  Similarity=0.196  Sum_probs=114.6

Q ss_pred             HHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh
Q 009409          120 SLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL  199 (535)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  199 (535)
                      .+..+...........+.|.+.+++|.+..+.++..+...++..++.+++|++.||+|+|+..... .+.++...+....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  334 (398)
T TIGR00895       256 WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGST  334 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHH
Confidence            333444445555566677888889999999999999999999999999999999999999554444 3334443333333


Q ss_pred             hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh
Q 009409          200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (535)
Q Consensus       200 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (535)
                      .++.+.+++..++.|++.+...+...+++.+.+|+++|++++|+......+|..+||.++|++
T Consensus       335 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       335 LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            445567778889999999999999999999999999999999999999999999999999876

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.5e-10  Score=117.80  Aligned_cols=176  Identities=20%  Similarity=0.194  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccC--CchhhHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFG--GRKVLQTGVLIWSL  191 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~  191 (535)
                      +.+..+.+...+..++..+....+|.+.++.|.+..+...+.++..+...++.++.|+++|+..  ++.+..+++++.++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4556666777777888888888999999999999999999999999999999999999999988  45556666666666


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-hhH
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WES  270 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~  270 (535)
                      +.+.. ...++++.++..-.+.|++.|........++.|..+.++...+.|+.....+++.++||+++|.+.+..| |..
T Consensus       378 ~~~~~-p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  378 ARLFL-PFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            66555 4677779999999999999999988888899999999999999999999999999999999999998877 999


Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 009409          271 VFYIFGLLGIAWFSGFKILQ  290 (535)
Q Consensus       271 ~f~~~~~~~~~~~~~~~~~~  290 (535)
                      .|+..++..++....++..+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999998887776666666

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.20  E-value=1.1e-10  Score=117.56  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=106.8

Q ss_pred             hhhhhcccCCCccchhHHHHHHH-HHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH---HhhhhhhhHHHHHHH-
Q 009409          137 IIPMSHRFGWNSSVAGLVQSSFF-WGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL---PLLAGFMPGLVLSRV-  211 (535)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~-  211 (535)
                      .+.+.+++|++..+++++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+..   +...++.+.+++.-+ 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            34567779999999999987654 5688999999999999999998877766655544332   122234444444443 


Q ss_pred             ---HhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhh
Q 009409          212 ---LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (535)
Q Consensus       212 ---~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  288 (535)
                         ..|++.+...+....++.+.+|.+    ..++.....++|..+++.++|.+.+..||+..|.+.++++++.++....
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence               455555566666666777766644    4456666667888777789999999999999999988888776655544


Q ss_pred             ccc
Q 009409          289 LQE  291 (535)
Q Consensus       289 ~~~  291 (535)
                      .+.
T Consensus       389 ~~~  391 (402)
T PRK11902        389 MRG  391 (402)
T ss_pred             Hhh
Confidence            443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=1.4e-10  Score=116.53  Aligned_cols=141  Identities=12%  Similarity=0.056  Sum_probs=115.7

Q ss_pred             cCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhh
Q 009409          144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSA  223 (535)
Q Consensus       144 ~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~  223 (535)
                      .+.+....|++.++..+...++.+..|++.||+|+|+.+.++.++.++...+.. ..++.+.+++.+++.|++.......
T Consensus       249 ~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       249 PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHHHHH
Confidence            355667789999999999999999999999999999999999888888776654 4566677888899999987665555


Q ss_pred             HHHHhhhcccccchhhHHHH-HHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHH
Q 009409          224 ATDLIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSG  285 (535)
Q Consensus       224 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~  285 (535)
                      ...+..+..+++.++...+. ++....+|.+++++++|++.+..||+..|++.+++.++..+.
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            66677777777777776666 678899999999999999999999999999998887665444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.20  E-value=7.3e-10  Score=110.98  Aligned_cols=163  Identities=16%  Similarity=0.145  Sum_probs=117.8

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 009409          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ  414 (535)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  414 (535)
                      +|.++.+.+..++..++........+.+. ..++.+..+.+++.+...+...++.++.|+++||+++|+.         +
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v---------l   71 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV---------M   71 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh---------h
Confidence            35566777777777776665666666665 4678899999999999999999999999999999998732         1


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHH
Q 009409          415 TIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYL  494 (535)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  494 (535)
                      ..+.++..+......... + .  ++..++.|++.+...+.....+.+.+|+++|++++|+.+....+|..+||.++|.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~-~-~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         72 FIANGIKLLGCLLMLFGI-H-P--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-H-H--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221111111111 1 1  34456678888888888888888889999999999999999999999999999999


Q ss_pred             hcccCcchHHHHHHHHHHH
Q 009409          495 LDSTHSWSMSLFAPSIFFY  513 (535)
Q Consensus       495 ~~~~g~~~~~~~~~~~~~~  513 (535)
                      .+..  +...+.+.+.+.+
T Consensus       148 ~~~~--~~~~~~i~~~~~~  164 (393)
T PRK11195        148 ADPH--AEAALAVCALIYL  164 (393)
T ss_pred             HHHH--HHHHHHHHHHHHH
Confidence            9863  5656655544333

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.19  E-value=7.1e-10  Score=106.43  Aligned_cols=393  Identities=11%  Similarity=0.036  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc----cCCchhhHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI----FGGRKVLQTGVLIW  189 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~~~~~  189 (535)
                      +.++.++...+...+++..=..+.+++.+++|++....+.+.-...+...+.+++.|..+||    +||||.++....+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            44445555555666777777778888999999999999999999999999999999999996    89888877655443


Q ss_pred             -HHHHHHHHhhhhhhh-----------------HHHHHHHHhhhccCCchhhHHHHhhhcccccchhh-HHHHHHHhhhh
Q 009409          190 -SLATALLPLLAGFMP-----------------GLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR-AVSFVFGGLSF  250 (535)
Q Consensus       190 -~~~~~~~~~~~~~~~-----------------~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~  250 (535)
                       +++.+++. .+.++.                 .+++...+.=++.-.....+-+++.|....+++.+ +++.+.....+
T Consensus       112 i~~~l~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  112 IAVSLFLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHhhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence             44444443 333322                 23344444445666778888999999997777766 99999999999


Q ss_pred             HHHHHhhhHHHhcccc--c---hhHHHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCC
Q 009409          251 GSVAGLLLAPPIIENL--G---WESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESL  324 (535)
Q Consensus       251 g~~~g~~~~~~l~~~~--g---w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (535)
                      |+.+|-.++++.--+.  .   -+.++..+...-...+. +.+...++... .....+++.  ..+.      .+.+.+.
T Consensus       191 GnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~-l~~~~~~~~--s~~~------~~~~~~~  261 (498)
T KOG0637|consen  191 GNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSES-LWYPQEKPL--SPKG------TTARSKS  261 (498)
T ss_pred             cceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccc-cccccccCC--CCCc------ccccccc
Confidence            9999988887443211  1   11222222222111111 11111111100 000000000  0000      0000000


Q ss_pred             CCC-----cHHHh-hhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCChhh----------------HHHHHhhH
Q 009409          325 KDV-----PWKAI-FRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLTE----------------AAWVSILP  381 (535)
Q Consensus       325 ~~~-----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~----------------~g~~~~~~  381 (535)
                      .+.     .+..+ ...|..+.+.+...+...+.+.+.-|...++-+ .|+-++..                ..+-..+.
T Consensus       262 ~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~in  341 (498)
T KOG0637|consen  262 SKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLN  341 (498)
T ss_pred             cCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHH
Confidence            000     01111 224678888888888888888888777777733 34432211                12334566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh-------c---CCCcHHHHHHHH-HHHHHHh
Q 009409          382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI-------D---LGLPHWEIVGIL-TAGLALS  450 (535)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~-~~g~~~~  450 (535)
                      .+...+.+....++.+|+|.|++............++............       .   .....+..+..+ ..+.-..
T Consensus       342 s~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a  421 (498)
T KOG0637|consen  342 SIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLA  421 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccc
Confidence            6667777888889999998654433221111111111110000000000       0   000000010000 0110000


Q ss_pred             hhhhhhhhhhhh-cc--CCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Q 009409          451 SFALSGLYCTHQ-DI--SPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGT  517 (535)
Q Consensus       451 ~~~~~~~~~~~~-~~--~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~  517 (535)
                      . .......... ..  ....+|...|+.|..-.+..++.....|.+.+..|+-+..-+..++..++++.
T Consensus       422 ~-t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~  490 (498)
T KOG0637|consen  422 I-TFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG  490 (498)
T ss_pred             c-ccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence            0 0000000010 01  11224778888888888999998888899999887665555554444444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.19  E-value=2.9e-10  Score=112.82  Aligned_cols=169  Identities=18%  Similarity=0.234  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhhhcccC-CCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIPMSHRFG-WNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP  197 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  197 (535)
                      ..+..++.+.....+..+.+.+.++.| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+.+++=..+.+
T Consensus       212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            334445666777777888888888888 7888888888888888888889999999999999999999999888887776


Q ss_pred             hhhhhhhHHHHH----HHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHh-hhhHHHHHhhhHHHhccccchhH--
Q 009409          198 LLAGFMPGLVLS----RVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENLGWES--  270 (535)
Q Consensus       198 ~~~~~~~~l~~~----~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~gw~~--  270 (535)
                      ..+++.+...+.    ..+.|+..+..+.....++.+..|++.|+++++++.+. .++|.++|.+++|++.+++|-+.  
T Consensus       292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~  371 (400)
T PF03825_consen  292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF  371 (400)
T ss_pred             HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence            554543443333    45699999999999999999999999999999998875 67999999999999999877543  


Q ss_pred             ----HHHHHHHHHHHHHHHhh
Q 009409          271 ----VFYIFGLLGIAWFSGFK  287 (535)
Q Consensus       271 ----~f~~~~~~~~~~~~~~~  287 (535)
                          .+.+.+++.++..+.+.
T Consensus       372 ~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  372 DWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence                44444444444433333

>TIGR00898 2A0119 cation transport protein

Probab=99.19  E-value=7.4e-11  Score=122.63  Aligned_cols=151  Identities=17%  Similarity=-0.033  Sum_probs=114.2

Q ss_pred             hhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHhhhcc
Q 009409          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF-MPGLVLSRVLVGIGE  217 (535)
Q Consensus       139 ~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~G~~~  217 (535)
                      ...++++.+.   .+...+..+...++.++.+++.||+|||+.+.++.++.+++.++.....+. .+..++..++.+++.
T Consensus       348 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       348 LDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             ccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            3444455443   233344556667788899999999999999999988888777666543332 134455556667777


Q ss_pred             CCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccCCC
Q 009409          218 GVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGET  294 (535)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  294 (535)
                      +...+....+.+|.+|++.|++++|+.+....+|.+++|.+.+ + ...++...+++.+++.++..+..+++||++.
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            7778888999999999999999999999999999999999998 4 3456778888888887777777777776543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.18  E-value=2.8e-10  Score=114.12  Aligned_cols=155  Identities=15%  Similarity=0.047  Sum_probs=115.6

Q ss_pred             hhhhHhhhhhhhcccCCCccchhHHHHHHHH-HHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh-----hhhh
Q 009409          130 KVNLSVAIIPMSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-----AGFM  203 (535)
Q Consensus       130 ~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~  203 (535)
                      ........+.+.+|.|++.+++|++...... ...++.++.|++.||+|+|+.+..+.++.++..+.....     ..+.
T Consensus       224 ~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (390)
T TIGR02718       224 AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGI  303 (390)
T ss_pred             HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcH
Confidence            3333445566667789999999999888764 666778999999999999999988776553333222111     1222


Q ss_pred             hHHHHHHHHhhhccCCchhhHHHHhhhcccc-cchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHH
Q 009409          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAW  282 (535)
Q Consensus       204 ~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~  282 (535)
                      ..++....+.+++.+...+...+.+.+..++ +.+++.+++.+...++|..+||.++|++.+..||+..|++.+++.++.
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       304 AVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            2334445556666777777777787777765 789999999999999999999999999999999999999887766654


Q ss_pred             HH
Q 009409          283 FS  284 (535)
Q Consensus       283 ~~  284 (535)
                      .+
T Consensus       384 ~~  385 (390)
T TIGR02718       384 IL  385 (390)
T ss_pred             HH
Confidence            43

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.17  E-value=4.2e-10  Score=100.80  Aligned_cols=127  Identities=18%  Similarity=0.113  Sum_probs=107.1

Q ss_pred             hhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccC
Q 009409          139 PMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEG  218 (535)
Q Consensus       139 ~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~  218 (535)
                      .+++.+|+|+...+.+.+..+....+..++.|.++||+|++.+.+.+..+..+..-..  ..-+.+.=++...+.|+..+
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~--l~Ft~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG--LFFTFLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh--HHhhhccHHHHHHHHhhhHH
Confidence            3788999999999999999999999999999999999999999888776655544222  11222444577788999988


Q ss_pred             CchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc
Q 009409          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (535)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (535)
                      ......+..++...|+++.|++.|..+...++|-++.|+++|++.++-|
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            8888889999999999999999999999999999999999999998654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.17  E-value=2.2e-10  Score=117.71  Aligned_cols=178  Identities=16%  Similarity=0.049  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhh-hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhh--------HH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVL--------QT  184 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~--------~~  184 (535)
                      +.+..+.+..+........+..++|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            334455566666666667777788875 566899999999999999999999999999999998755322        11


Q ss_pred             HHHHH--HHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh
Q 009409          185 GVLIW--SLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (535)
Q Consensus       185 ~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (535)
                      +....  ++..+.......+....+++..+.+.+.+...+.......+..| +.+|.++++.+....+|+.++|.+.+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111  11111111112233334444555555555555555555567666 5899999999999999999999999998


Q ss_pred             cccc---chhHHHHHHHHHHHHHHHHhhhcccC
Q 009409          263 IENL---GWESVFYIFGLLGIAWFSGFKILQEG  292 (535)
Q Consensus       263 ~~~~---gw~~~f~~~~~~~~~~~~~~~~~~~~  292 (535)
                      .+..   +|+..|++.++..++..+........
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~  452 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSA  452 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            7643   48999999888777766665555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.17  E-value=2.1e-09  Score=107.93  Aligned_cols=174  Identities=8%  Similarity=-0.063  Sum_probs=117.3

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      ......++...........+|.+. +.+|.++.+.+++.+...++..++.++.|+++||+|+|         .....+..
T Consensus        12 ~~~~~~~~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr---------~~~~~~~~   81 (394)
T PRK11652         12 MLVLLVAVGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR---------PVILVGMS   81 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh---------HHHHHHHH
Confidence            334444444444445555677766 46899999999999999999999999999999999865         22222333


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      ...+....... .++....++..++.|++.+...+.......+..++++++.+.+..+....++..++|.++|.+.+..|
T Consensus        82 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g  160 (394)
T PRK11652         82 IFILGTLVALF-AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG  160 (394)
T ss_pred             HHHHHHHHHHH-HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            33333332222 23344445555666666555444444455555777889999999999999999999999999998774


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          500 SWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                       |...|.+.+++.++..++.....++
T Consensus       161 -~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        161 -WRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence             8888888766555444444333333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.16  E-value=6.4e-10  Score=113.23  Aligned_cols=179  Identities=11%  Similarity=0.016  Sum_probs=117.5

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 009409          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ  414 (535)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  414 (535)
                      ++.++...+...+.......+....|. +++ .|+++.+.+++.+...++..++.++.|+++||+|+|+.         .
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~---------~   94 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPY-LVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF---------L   94 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHH-HHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee---------h
Confidence            334444444444444333344555664 444 59999999999999999999999999999999986522         2


Q ss_pred             HHHHHHHHHHHHHhhhcC---CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHH
Q 009409          415 TIAFLSPAVCMTLSSIDL---GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALT  491 (535)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  491 (535)
                      ..+.++.++...+.....   .+.....+..++.|++.+...+.....+.+.+|+++|++++|+.+....+|+.++|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712        95 PAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            223333233322222111   12222334445566666655555666667778899999999999999999999999888


Q ss_pred             HHHhcccCcchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          492 GYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       492 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      +.+.+...+|+..|++.+++.++..++.++..+
T Consensus       175 ~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       175 LLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            876654346999998877766665555554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.16  E-value=4.4e-09  Score=105.74  Aligned_cols=171  Identities=12%  Similarity=0.036  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 009409          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIA  417 (535)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  417 (535)
                      ++.+....+...+........+|.+ ++.+|.+..+.|++.+...++..++.+..|++.||+|+|         .....+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r---------~~~~~g   74 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK---------AGILLG   74 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHH
Confidence            3444455555555554555677766 567899999999999999999999999999999999965         333444


Q ss_pred             HHHHHHHHHHhhh--cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          418 FLSPAVCMTLSSI--DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       418 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      .++.++...+...  ..++....++..++.|.+.+.........+.+..+++++++..++.+...++|..++|.+++.+.
T Consensus        75 ~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        75 LFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444333221  12233445556677788888777777777777778889999999999999999999999999886


Q ss_pred             ccc-------------------------CcchHHHHHHHHHHHHHHHh
Q 009409          496 DST-------------------------HSWSMSLFAPSIFFYLTGTI  518 (535)
Q Consensus       496 ~~~-------------------------g~~~~~~~~~~~~~~~~~~~  518 (535)
                      ...                         .+|+.+|.+.+++.++..++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            431                         13777887776655544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.14  E-value=4.4e-09  Score=106.07  Aligned_cols=162  Identities=8%  Similarity=0.016  Sum_probs=113.9

Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      ...+...+|.+. +.+|.+..+.+...+...++..++.++.|+++||+|+|         .....+.....+....... 
T Consensus        29 ~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r---------~~l~~~~~~~~~~~~~~~~-   97 (406)
T PRK15402         29 NDMIQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR---------PVMLAGVAFFILTCLAILL-   97 (406)
T ss_pred             hhhHhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHHHH-
Confidence            334455566555 56899999999999999999999999999999999865         2223333333333333332 


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      .++....++..++.|.+.+...+.......+.+++++++++.++......++..++|.+++.+.+.. +|...|++.+++
T Consensus        98 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-~w~~~~~~~~~~  176 (406)
T PRK15402         98 AQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL-PWRGMFVLFAAL  176 (406)
T ss_pred             HccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHH
Confidence            2334444555566666666555555566667788889999999998888899999999999999976 588888887776


Q ss_pred             HHHHHHhhhhhccC
Q 009409          512 FYLTGTIVWLAFAS  525 (535)
Q Consensus       512 ~~~~~~~~~~~~~~  525 (535)
                      .++..+..+...++
T Consensus       177 ~~~~~~~~~~~~~~  190 (406)
T PRK15402        177 AALSFFGLWRAMPE  190 (406)
T ss_pred             HHHHHHHHHHhCCC
Confidence            66555544444443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=2.8e-08  Score=98.14  Aligned_cols=316  Identities=16%  Similarity=0.105  Sum_probs=190.9

Q ss_pred             hhHH-HHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhh
Q 009409          151 AGLV-QSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA  229 (535)
Q Consensus       151 ~~~~-~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~  229 (535)
                      .|.. .++.+..+.++.++.+.+.|+.|.|+.++++...+....+..  +-.|-+-+++...+.|+|.+..+.....+++
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf--l~~N~y~~yfssallG~Gaallw~GqG~ylt  128 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF--LFPNSYYLYFSSALLGFGAALLWTGQGGYLT  128 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH--HhcchHHHHHHHHHhhhhHHheecccceehh
Confidence            3443 778888999999999999999999999999999987777554  3344477899999999999999999999999


Q ss_pred             hcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc--------chh-HH----------HHHHHHHHH---HHHHHhh
Q 009409          230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--------GWE-SV----------FYIFGLLGI---AWFSGFK  287 (535)
Q Consensus       230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------gw~-~~----------f~~~~~~~~---~~~~~~~  287 (535)
                      +...++.+.+..++..+....+.++|..+...+..+.        +-+ +.          ..+.+++..   +..+...
T Consensus       129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~  208 (461)
T KOG3098|consen  129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFD  208 (461)
T ss_pred             hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhee
Confidence            9999999999999999999999999977765554321        111 11          111111111   1111111


Q ss_pred             hcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH-
Q 009409          288 ILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-  366 (535)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~-  366 (535)
                      +.|.+......+.. +       .......         ...-+++++|+...+....+..++...-.....|..+.-. 
T Consensus       209 ~~p~~~~~~~~~~~-~-------~~~~~~l---------~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~  271 (461)
T KOG3098|consen  209 FLPSKDVVNCKSSS-E-------TSFSELL---------KLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR  271 (461)
T ss_pred             ecCccchhhhhhhc-c-------ccHHHHH---------HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence            12211110000000 0       0000000         0123566778887777666665555555556666665422 


Q ss_pred             -hCCC-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc-C-CC--------
Q 009409          367 -LSLN-LTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID-L-GL--------  434 (535)
Q Consensus       367 -~g~s-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--------  434 (535)
                       .+.+ ....++.....+++.++++...+.+.+|..+.+.++      .+.++..+-.....+.... + +.        
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~------~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~  345 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKP------TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSP  345 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCc------chhHHHHHHHHHHHHHhccccccCCCCCCccc
Confidence             2322 333455566677777888888888888876554332      2223333222222222211 1 11        


Q ss_pred             -------cHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHH
Q 009409          435 -------PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTG  492 (535)
Q Consensus       435 -------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G  492 (535)
                             .....+..++.|++-+............ ..|++|..+.++.-.-..++..++-....
T Consensus       346 ~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~-~~~~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  346 PLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIAL-LYPDDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             ccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence                   1133344456677666655555555555 44888898888888877777666554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.14  E-value=1.9e-09  Score=107.61  Aligned_cols=162  Identities=14%  Similarity=0.080  Sum_probs=118.7

Q ss_pred             hHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 009409          352 HYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID  431 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (535)
                      .......+|.+.+ .+|.+..+.+++.+...++..++.++.|++.||+|+|         .....+.+...+...+... 
T Consensus         7 ~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~i~~~~~~~-   75 (377)
T PRK11102          7 IDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK---------PVILGGTLVFALAAVACAL-   75 (377)
T ss_pred             HHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh---------HHHHHHHHHHHHHHHHHHH-
Confidence            3455677888885 5799999999999999999999999999999999854         2233333333333333332 


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHH
Q 009409          432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIF  511 (535)
Q Consensus       432 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~  511 (535)
                      .++.....+..++.|++.+...+.......+..++++|+++.|+.+....+|..++|.+++.+.+.. +|...|.+.+++
T Consensus        76 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~  154 (377)
T PRK11102         76 AQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALA  154 (377)
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHH
Confidence            2334445555666777777666666677777788899999999999999999999999999999987 488888877666


Q ss_pred             HHHHHHhhhhhccC
Q 009409          512 FYLTGTIVWLAFAS  525 (535)
Q Consensus       512 ~~~~~~~~~~~~~~  525 (535)
                      .++..++.....++
T Consensus       155 ~~~~~~~~~~~~~~  168 (377)
T PRK11102        155 AILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHhCCc
Confidence            65555544444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.14  E-value=4.4e-09  Score=108.03  Aligned_cols=166  Identities=16%  Similarity=0.208  Sum_probs=109.1

Q ss_pred             HHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Q 009409          345 HFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVC  424 (535)
Q Consensus       345 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (535)
                      .++.....+....++|.+. +.+|++..+.+++.+...++..++.++.|+++||+|+|         .....+.+..++.
T Consensus        45 ~~~~~~~~~~~~~~~~~l~-~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r---------~~~~~~~~~~~~~  114 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIR-DNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR---------YGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHH
Confidence            3333444444555556554 67899999999998889999999999999999999865         2223333333333


Q ss_pred             HHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc----c---
Q 009409          425 MTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD----S---  497 (535)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~----~---  497 (535)
                      ..+.... .+....++..++.|++.+... .....+.+.+++++||+++|+.+...++|..+++.+.+.+..    .   
T Consensus       115 ~~~~~~~-~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        115 VFCMSLV-SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             HHHHHHh-cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3333332 233344444556666655432 334456666888999999999998888888888777665532    1   


Q ss_pred             -cCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          498 -THSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       498 -~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                       ..+|+..|++.+++.++..++.++.
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             1158999998877666655555444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.14  E-value=3.8e-09  Score=106.53  Aligned_cols=159  Identities=10%  Similarity=0.070  Sum_probs=112.3

Q ss_pred             HHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 009409          355 CLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGL  434 (535)
Q Consensus       355 ~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (535)
                      ...-+|.. .+.+|.+....+...+.+.++..++.++.|+++||+|+|         ..+..+..+..+...+... .++
T Consensus        35 ~~p~l~~i-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~-a~~  103 (413)
T PRK15403         35 IQPGIINV-VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR---------PVLITGALIFTLACAATLF-TTS  103 (413)
T ss_pred             hccCHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch---------HHHHHHHHHHHHHHHHHHH-cCC
Confidence            34444553 457899999999999999999999999999999999875         2233333333333333333 234


Q ss_pred             cHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHH
Q 009409          435 PHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL  514 (535)
Q Consensus       435 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~  514 (535)
                      ....+++-++.|++.+...........+.++++++++++++.+....+|..+||.+++.+.+.. +|...|++.+++.++
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~-gw~~~f~~~~~~~~i  182 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            4455566677777665444444444555678888999999999999999999999999999876 599999887776665


Q ss_pred             HHHhhhhhccC
Q 009409          515 TGTIVWLAFAS  525 (535)
Q Consensus       515 ~~~~~~~~~~~  525 (535)
                      ..+..+...++
T Consensus       183 ~~~~~~~~lp~  193 (413)
T PRK15403        183 AFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHhCCC
Confidence            55444443443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.13  E-value=7.5e-10  Score=98.29  Aligned_cols=317  Identities=16%  Similarity=0.116  Sum_probs=182.6

Q ss_pred             hhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 009409          129 DKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVL  208 (535)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  208 (535)
                      +...-+|++-.+-+.+|+...++|.+.-..+-..+++..+.|.++||.|||+..+.-++.+.++++-  -.++.+-.+++
T Consensus        52 gDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT--KhSpqYkVLmV  129 (454)
T KOG4332|consen   52 GDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT--KHSPQYKVLMV  129 (454)
T ss_pred             hhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh--hcCCceEEEee
Confidence            3444566777788889999999999888888888899999999999999999887766666655532  35666788999


Q ss_pred             HHHHhhhccCCchhhHHHH-hhhcccccchhhHHHHHH--------HhhhhHHHHHhhhHHHhcccc--chhHHHHHHHH
Q 009409          209 SRVLVGIGEGVSPSAATDL-IARSIPLEERSRAVSFVF--------GGLSFGSVAGLLLAPPIIENL--GWESVFYIFGL  277 (535)
Q Consensus       209 ~~~~~G~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~--------~~~~~g~~~g~~~~~~l~~~~--gw~~~f~~~~~  277 (535)
                      +|.+-|+..+..+....++ +.|..  ++|+.-.-+..        .+..+-.+++.+.+..+.+.+  |--.+|-..+.
T Consensus       130 GR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAac  207 (454)
T KOG4332|consen  130 GRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAAC  207 (454)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHH
Confidence            9999999998887777664 44443  33433322221        334445566666666666654  34445544333


Q ss_pred             HHHH-HHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHH
Q 009409          278 LGIA-WFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCL  356 (535)
Q Consensus       278 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  356 (535)
                      +..+ ..++..-..|+......+   + ...   +..            +...+.+..++++.++.-+..+.-...|.+.
T Consensus       208 fLaigmAvil~~W~ENygdps~~---k-dll---tqf------------~gaa~aiaSD~ki~LLG~iqsLFE~smytFV  268 (454)
T KOG4332|consen  208 FLAIGMAVILSSWSENYGDPSEN---K-DLL---TQF------------KGAARAIASDEKIALLGAIQSLFEGSMYTFV  268 (454)
T ss_pred             HHHHHHHHHHhhhhhccCChhhh---H-HHH---HHh------------hHhHHHHhcchHHHHHHHHHHHHhhhhheee
Confidence            2222 222222222322211100   0 000   000            0012455667777666555555555555443


Q ss_pred             -HhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhh----h-
Q 009409          357 -SWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSS----I-  430 (535)
Q Consensus       357 -~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  430 (535)
                       .|.|..=-+..+   .--|.+++-+.++..+|+-+..++..|-..+   .-....    +.+++....+.+..    . 
T Consensus       269 FLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~---ve~ymq----ivf~vs~a~l~Lpilt~~vs  338 (454)
T KOG4332|consen  269 FLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPK---VESYMQ----IVFLVSIAALLLPILTSSVS  338 (454)
T ss_pred             eeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcc---cchHHH----HHHHHHHHHHHHHHHHhccC
Confidence             344432211112   2246778888888888888777776653221   111111    22222222222111    1 


Q ss_pred             -cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHH
Q 009409          431 -DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNT  478 (535)
Q Consensus       431 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  478 (535)
                       ...++...+++++++-...+.+++...-.-.+.+|++.|++.+.++..
T Consensus       339 P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRv  387 (454)
T KOG4332|consen  339 PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRV  387 (454)
T ss_pred             CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheec
Confidence             123444556666667777787788877777777888888877666544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.12  E-value=7.9e-10  Score=105.60  Aligned_cols=177  Identities=18%  Similarity=0.111  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhh-hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVA-IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      .+....++.++..=+.+.+... ...-..++|++..+..++.....+..++|++++|++.||+|.|+++.++.+++.+.+
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            3334444444433333333333 333445999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-hhHHH
Q 009409          194 ALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVF  272 (535)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f  272 (535)
                      +... +......+.++-.+.|+..|+.+..+-++..+..|+++-++.+|+++...-.++.+||.+.+.+.+..| -|..+
T Consensus       333 ~~~~-~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         333 LYLI-FLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHH-HccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            6653 444446777888999999999999999999999999999999999999999999999999999987654 77777


Q ss_pred             HHHHHHHHHHHHHhhhcccC
Q 009409          273 YIFGLLGIAWFSGFKILQEG  292 (535)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~  292 (535)
                      ....++.++.++....+|.+
T Consensus       412 ~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         412 LSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHhhHhhEEeecCC
Confidence            77777666666666666655

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.2e-08  Score=95.46  Aligned_cols=360  Identities=14%  Similarity=0.097  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhc-----ccCCchhhHH-HHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQT-GVL  187 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~-~~~  187 (535)
                      +-+..+.+.+..++.-..... .+|.+.+.-|.|.++.+...-++ ..+ ..-++|.++.|     |+||||..++ +..
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hHH-HHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            455566677888888887777 99999998899988876443322 232 34678999999     9999886554 333


Q ss_pred             HHHHHHHHHHhhhhh----------hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhh
Q 009409          188 IWSLATALLPLLAGF----------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLL  257 (535)
Q Consensus       188 ~~~~~~~~~~~~~~~----------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  257 (535)
                      +.+..+.+++...+.          ...+....++.-+..+.-..+...+.-.+.++++.|.+......+...|.++|..
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            434444343332221          1223334466667777777777777778888899999988888888888888876


Q ss_pred             hHHHhcc-------ccch---------hHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhc
Q 009409          258 LAPPIIE-------NLGW---------ESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMG  321 (535)
Q Consensus       258 ~~~~l~~-------~~gw---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (535)
                      +.-.+..       ..+|         ....++.+.+.++.-....+..++++...    .++.....++.+        
T Consensus       188 ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~----~~e~~~~i~~~y--------  255 (510)
T KOG3574|consen  188 VFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV----DEELELGIHESY--------  255 (510)
T ss_pred             eeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh----hhhhhcCHHHHH--------
Confidence            6433322       0112         22333444444444434444433332221    111111111110        


Q ss_pred             cCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 009409          322 ESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (535)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (535)
                           .-++++++-|.+..+..+....-.++.+-....+.-+.| .|++..+.+++..+.    ++..++.+....|+..
T Consensus       256 -----k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~----~plqI~l~~~~gk~ta  325 (510)
T KOG3574|consen  256 -----KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPL----VPLQIALPLYIGKWTA  325 (510)
T ss_pred             -----HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeeh----hhHHHhhhhhheeecC
Confidence                 123566777777777777777777777777888888875 599998887665443    3444444444444432


Q ss_pred             c-CCCchhHHHHHHHHHHHH--HHHHHHHhhhcC-C-C---cH--HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhH
Q 009409          402 T-GVETTMVRKICQTIAFLS--PAVCMTLSSIDL-G-L---PH--WEIVGILTAGLALSSFALSGLYCTHQDISPEYASI  471 (535)
Q Consensus       402 ~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~-~---~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  471 (535)
                      . +.-....|....-+....  .+.....-.+.. + .   ..  ..+....+.+.............-++..+|..-|+
T Consensus       326 ~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggT  405 (510)
T KOG3574|consen  326 GPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGT  405 (510)
T ss_pred             CCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCcc
Confidence            1 111111111111111111  111111111111 0 0   11  11111223333333344445555666678999999


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          472 LLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       472 ~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      .+.+.|+..++|+-.-..+++.+.|..
T Consensus       406 ymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  406 YMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence            999999999999999999999998854

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.10  E-value=1e-08  Score=102.61  Aligned_cols=149  Identities=11%  Similarity=0.004  Sum_probs=101.4

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 009409          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ  414 (535)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  414 (535)
                      +|.++...+..++.....+.+....+.+-++.+|++..+.+++.+++.++..++++..|++.||+|.|        + ..
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R--------~-v~  103 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR--------R-WT  103 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------H-HH
Confidence            35666666666666666666666666666557999999999999999999999999999999999975        2 22


Q ss_pred             HHHHHHHHHHHHHhhhc----CCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHH
Q 009409          415 TIAFLSPAVCMTLSSID----LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVAL  490 (535)
Q Consensus       415 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i  490 (535)
                      .++.+..++........    .++....++..++.|++ +.........+..-+|+++||++.|+....+++|..+++.+
T Consensus       104 ~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l  182 (462)
T PRK15034        104 VFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV  182 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence            23333333333333221    13334445555667776 44556666667777889999999999977777777766555


Q ss_pred             HHH
Q 009409          491 TGY  493 (535)
Q Consensus       491 ~G~  493 (535)
                      ...
T Consensus       183 ~p~  185 (462)
T PRK15034        183 APL  185 (462)
T ss_pred             HHH
Confidence            543

>TIGR00896 CynX cyanate transporter

Probab=99.09  E-value=1.8e-09  Score=106.76  Aligned_cols=141  Identities=14%  Similarity=0.023  Sum_probs=108.8

Q ss_pred             HHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc-CCchhhHHHHHHHHHHHHHHHhhhhhh
Q 009409          125 ICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLAGFM  203 (535)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~  203 (535)
                      +..........+.|.+.++.|.+..+.+++.+...++..+++++.|++.||+ +||+.+.++.++.+++.++..+..++ 
T Consensus       208 ~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  286 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-  286 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-
Confidence            3334444556677887778899999999999999999999999999999999 56666777777766666555433222 


Q ss_pred             hHHHHHHHHhhhccCCchhhHHHHhhhccc-ccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc
Q 009409          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (535)
Q Consensus       204 ~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (535)
                      ... ...++.|++.+...+...+.+.+..+ +++++..+++.+....+|.+++|.+.|++.++.|
T Consensus       287 ~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       287 GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222 24567899999888887777765554 5667899999999999999999999999998765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.09  E-value=1.6e-08  Score=92.31  Aligned_cols=164  Identities=16%  Similarity=0.139  Sum_probs=124.7

Q ss_pred             HHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhh-----
Q 009409          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA-----  200 (535)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----  200 (535)
                      .....+.++.+-|.+++.+|+|++|.+.+.+...+|..+ .++.|.+.|++|++.++.++.+...++........     
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~   92 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP   92 (250)
T ss_pred             hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence            334667788889999999999999999999999999876 58899999999999999999998888887664432     


Q ss_pred             -hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHH-
Q 009409          201 -GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLL-  278 (535)
Q Consensus       201 -~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~-  278 (535)
                       ..++.+.+..++.|.+.+...........+.|| ++||++.|+.-...++++.+-..+...+.+.-.-+ .+.+.++. 
T Consensus        93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~-fll~la~~~  170 (250)
T PF06813_consen   93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSS-FLLFLAVLP  170 (250)
T ss_pred             ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHH-HHHHHHHHH
Confidence             235667777778888877777777777778898 68999999999999999998888877776653333 33444443 


Q ss_pred             HHHHHHHhhhcccC
Q 009409          279 GIAWFSGFKILQEG  292 (535)
Q Consensus       279 ~~~~~~~~~~~~~~  292 (535)
                      .++.++...++++.
T Consensus       171 ~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  171 AVVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHHhhheecc
Confidence            33444444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.08  E-value=5.5e-09  Score=119.46  Aligned_cols=172  Identities=12%  Similarity=0.107  Sum_probs=115.1

Q ss_pred             HhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHH----HHHHhCC-ChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009409          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY----FSEELSL-NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVE  405 (535)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~----l~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  405 (535)
                      .+++++.++.+++..++..++.+.....++.+    +.+..+. +....++..+...+..++..++.|+++||+++|+. 
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~-   84 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL-   84 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH-
Confidence            45677777777777666666544333222222    2111111 12456777788888999999999999999997621 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhh
Q 009409          406 TTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGI  485 (535)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~  485 (535)
                          .+............  .+......+.+.++++.++.|++.+.+.+.....+.+.+++++++.++|+.++...+|.+
T Consensus        85 ----~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~  158 (1140)
T PRK06814         85 ----AKILKFAEIGIAAL--AIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL  158 (1140)
T ss_pred             ----HHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence                00111111111111  111222244566677778888888888888888888889999999999999999999999


Q ss_pred             HHHHHHHHHhcccCcchHHHHHHHH
Q 009409          486 VGVALTGYLLDSTHSWSMSLFAPSI  510 (535)
Q Consensus       486 igp~i~G~l~~~~g~~~~~~~~~~~  510 (535)
                      +||.++|++.+.. +|...|...++
T Consensus       159 igp~l~g~l~~~~-~~~~~~~~~~~  182 (1140)
T PRK06814        159 LGTIIGGLATISG-NFVILVALLMG  182 (1140)
T ss_pred             HHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            9999999999987 48777744333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.07  E-value=8.5e-08  Score=100.59  Aligned_cols=152  Identities=19%  Similarity=0.234  Sum_probs=122.8

Q ss_pred             hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHHHHHHHHHhhhh-------hhhHHHH
Q 009409          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAG-------FMPGLVL  208 (535)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~  208 (535)
                      ...+.+.+|.+.+.+..+...+....-+.++++|+++|+ +|+++.+.++.++..++.++++..+.       .....++
T Consensus        11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~   90 (654)
T TIGR00926        11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLL   90 (654)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHH
Confidence            344556689999999889888888888999999999996 79999999999998888877653221       1123567


Q ss_pred             HHHHhhhccCCchhhHHHHhhhccccc---chhhHHHHHHHhhhhHHHHHhhhHHHhcccc-------chhHHHHHHHHH
Q 009409          209 SRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-------GWESVFYIFGLL  278 (535)
Q Consensus       209 ~~~~~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------gw~~~f~~~~~~  278 (535)
                      +..+.++|.|++-|...+...|.++++   +|-..+.++..+.++|+.+++++.+++.+..       +|...|.+.+++
T Consensus        91 gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~  170 (654)
T TIGR00926        91 GLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAIL  170 (654)
T ss_pred             HHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHH
Confidence            788889999999999999999999754   3677888899999999999999999887443       699999999888


Q ss_pred             HHHHHHHhhh
Q 009409          279 GIAWFSGFKI  288 (535)
Q Consensus       279 ~~~~~~~~~~  288 (535)
                      .++.++++..
T Consensus       171 m~ia~lvf~~  180 (654)
T TIGR00926       171 MILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHH
Confidence            7776655544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=9.8e-10  Score=103.56  Aligned_cols=153  Identities=16%  Similarity=0.145  Sum_probs=127.4

Q ss_pred             hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 009409          367 LSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAG  446 (535)
Q Consensus       367 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  446 (535)
                      .+-..++.|++++...+..++.+++.|.+.||+|.|         ..+.+++..+.....++.+. ++.+..+++-.+-|
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~---------ipm~~Gl~vmf~sTilFafg-~sy~~l~vAR~LQg  170 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK---------IPMVAGLFVMFLSTILFAFG-NSYPMLFVARSLQG  170 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc---------cHHHHHHHHHHHHHHHHHHc-chhHHHHHHHHHhh
Confidence            355678899999999999999999999999999865         55566666666666666553 34456677788899


Q ss_pred             HHHhhhhhhhhhhhhhccCCcc-hhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          447 LALSSFALSGLYCTHQDISPEY-ASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      ++.++........+++.++.|. |++++|+.-....+|..+||+++|.++|..| +...|.++++++++...+.++..+.
T Consensus       171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCc
Confidence            9999988899999999888766 6999999999999999999999999999985 8999999999888888888887766


Q ss_pred             CCCCC
Q 009409          526 SKPQN  530 (535)
Q Consensus       526 ~~~~~  530 (535)
                      ++.++
T Consensus       250 ~~~~~  254 (464)
T KOG3764|consen  250 TEMDP  254 (464)
T ss_pred             cccCc
Confidence            55544

>PRK10133 L-fucose transporter; Provisional

Probab=99.06  E-value=2.6e-08  Score=101.13  Aligned_cols=149  Identities=11%  Similarity=0.065  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 009409          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTI  416 (535)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  416 (535)
                      .+..+.+..+...+.........|.+ ++.+|.++.+.|++.+...++..++.++.|++.||+|+|         ..+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r---------~~l~~   96 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIIT   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHH
Confidence            34455566666666777777888887 678999999999999999999999999999999999965         33334


Q ss_pred             HHHHHHHHHHHh--hhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHH
Q 009409          417 AFLSPAVCMTLS--SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYL  494 (535)
Q Consensus       417 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  494 (535)
                      +.++.++...+.  ....++....++..++.|++.+.........+.+..++++++...++.+....+|..++|.+++.+
T Consensus        97 g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133         97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443332  122334455566677888888877777777666544445555679999999999999999998866


Q ss_pred             h
Q 009409          495 L  495 (535)
Q Consensus       495 ~  495 (535)
                      .
T Consensus       177 ~  177 (438)
T PRK10133        177 I  177 (438)
T ss_pred             H
Confidence            5

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.05  E-value=1e-09  Score=107.07  Aligned_cols=158  Identities=15%  Similarity=0.107  Sum_probs=131.0

Q ss_pred             hHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 009409          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVL  212 (535)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  212 (535)
                      +..+...+.++-+.+...+|.+.++..+.-++.-.+..++.+|+|.|+.++++.+++++=..+.+ ++++.+.+.+.+.+
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i~~~klL  321 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVISLIKLL  321 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHH
Confidence            44455555555666777899999999999999999999999999999999999999887776664 67777899999999


Q ss_pred             hhhccCCchhhHHHHhhhcccccchhhHHHHH-HHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhccc
Q 009409          213 VGIGEGVSPSAATDLIARSIPLEERSRAVSFV-FGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQE  291 (535)
Q Consensus       213 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  291 (535)
                      .|+-.+........++++.+|++-.++...+. +...++|.++.+.++|.+.|+.|.+.+|++++.+.++..++..+..+
T Consensus       322 H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  322 HALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            99999999999999999999988888888885 67888999999999999999999999999999887766555444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.04  E-value=3.4e-09  Score=107.57  Aligned_cols=152  Identities=20%  Similarity=0.175  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhhhcc-cCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATA  194 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~  194 (535)
                      +..+.+..++............+.+.++ +|.+ ...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.+
T Consensus       227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~  305 (428)
T PF13347_consen  227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFL  305 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHH
Confidence            3345555556666666666666665555 4544 6778888899999999999999999999999999999999999888


Q ss_pred             HHHhhh-hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccc-------cchhhHHHHHHHhhhhHHHHHhhhHHHhcccc
Q 009409          195 LLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (535)
Q Consensus       195 ~~~~~~-~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (535)
                      +..+.. ++.+.+++..++.|++.+...+...++++|..+.       ++.|..+|.++....+|..+++.+.+.+.+..
T Consensus       306 ~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  306 LLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             HHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            876554 5778999999999999999999999999998863       34588999999999999999999999887654


Q ss_pred             ch
Q 009409          267 GW  268 (535)
Q Consensus       267 gw  268 (535)
                      |+
T Consensus       386 Gy  387 (428)
T PF13347_consen  386 GY  387 (428)
T ss_pred             Cc
Confidence            43

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.03  E-value=1.9e-07  Score=90.77  Aligned_cols=324  Identities=15%  Similarity=0.098  Sum_probs=179.6

Q ss_pred             hHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhc
Q 009409          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (535)
Q Consensus       152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~  231 (535)
                      +.+.-+-.+...+..+.+.++.+|+..+.-..+..++.+++.++.+ ++++.+.-+++-.+.+++.|........+.. .
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va-~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~  139 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVA-FSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F  139 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhee-eccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence            4455566677778888888999998766555566666677776664 6677788888999999999988888777754 5


Q ss_pred             ccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-ccchhHHHHHHHHHHHHHHHHhh-hcccCCCCCCCCCCcchhhhhh
Q 009409          232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWESVFYIFGLLGIAWFSGFK-ILQEGETSNGATLAPRSNYINM  309 (535)
Q Consensus       232 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  309 (535)
                      +++    ...+-+.++.+.++++|+..--.+.+ ..+.|..+.+...+.++..+.++ .++.+++.......+.+... .
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~-~  214 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA-E  214 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc-c
Confidence            553    35788888888899999887766665 23457788887777655544433 44433322211111110000 0


Q ss_pred             hhhhhhhHHH-hccCCCCCcHHHhh-hcHHHHHHHHHHHHHhhhhHHHHH-hhHHHHH-HHhCCChhhHHHHHhhHHHHH
Q 009409          310 KKSLSASLEE-MGESLKDVPWKAIF-RSKAVWAMIYAHFCGSWGHYTCLS-WLPTYFS-EELSLNLTEAAWVSILPPLAS  385 (535)
Q Consensus       310 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~-~~~g~s~~~~g~~~~~~~~~~  385 (535)
                      ++....+.++ ..+...+..+++-+ +-+.+...++-.++.++..|.++. ..|...- ....-...+..++...+.++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GV  294 (402)
T PF02487_consen  215 DDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGV  294 (402)
T ss_pred             ccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHHH
Confidence            0000000000 00111112222222 223333355555555555555533 3333321 111112333445555566665


Q ss_pred             HHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH--hhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 009409          386 VLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL--SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD  463 (535)
Q Consensus       386 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  463 (535)
                      .+++--...+  |+  |       +.++..+.-.+-.+.+++  .....++.+..++.++..|+..|..+......+.++
T Consensus       295 FISRSS~~~~--ri--r-------~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~  363 (402)
T PF02487_consen  295 FISRSSLPFF--RI--R-------RLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEE  363 (402)
T ss_pred             hhhhcceeee--eh--h-------hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            5554432221  11  1       111111111111111111  111123344455566777888888888888888888


Q ss_pred             cCCcchhHHHHHHHHhhhhhhhHHHHHHHH
Q 009409          464 ISPEYASILLGITNTVGAVPGIVGVALTGY  493 (535)
Q Consensus       464 ~~~~~~g~~~g~~~~~~~lg~~igp~i~G~  493 (535)
                      .++++|-.++|.......+|..++..++-.
T Consensus       364 ~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  364 VPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999888888777766543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.02  E-value=1.1e-08  Score=117.40  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=111.9

Q ss_pred             HhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCh--hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 009409          331 AIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNL--TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (535)
Q Consensus       331 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  408 (535)
                      ..++++.++.+.+..++..+........+..++...++.+.  ...+++.++..++.+++.++.|+++||+|+|      
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk------   77 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN------   77 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH------
Confidence            45677778777777777766665555555555555556543  3467778888899999999999999999975      


Q ss_pred             HHHHHHHHHHHHHHH--HHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhH
Q 009409          409 VRKICQTIAFLSPAV--CMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIV  486 (535)
Q Consensus       409 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i  486 (535)
                         ..+..+.++.++  .+........+...+++..++.|++.+...+....++.+.+++++|++++|+.+....+|.++
T Consensus        78 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~l  154 (1146)
T PRK08633         78 ---RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILA  154 (1146)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHH
Confidence               222222221111  111111112334555666677888888777777778888899999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 009409          487 GVALTGYLLDS  497 (535)
Q Consensus       487 gp~i~G~l~~~  497 (535)
                      ||.++|++.+.
T Consensus       155 g~~l~~~l~~~  165 (1146)
T PRK08633        155 GTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.00  E-value=4.1e-10  Score=108.43  Aligned_cols=178  Identities=11%  Similarity=0.105  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 009409          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF  418 (535)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  418 (535)
                      ..+.+...+...-.|.+-..++- .++.+|.++...|++...+.+...++++++|++.||++|++         ++.++.
T Consensus        36 ~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~---------v~~vG~  105 (493)
T KOG1330|consen   36 VILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKR---------VIAVGI  105 (493)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcce---------EEeeHH
Confidence            33444444444444444443332 34578999999999999999999999999999999998653         334444


Q ss_pred             HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          419 LSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      .+-.+..+...+. ...+...+.-.+.|++-+.+.+.....+.+.++.++|++++++++.....|..+|-..++++.+..
T Consensus       106 ~iW~~Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  106 FIWTLAVFASGFS-NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            4444444333332 233444556678899999999999999999999999999999999999999999999999999998


Q ss_pred             CcchHHHHHHHHHHHHHHHhhhhhccCCC
Q 009409          499 HSWSMSLFAPSIFFYLTGTIVWLAFASSK  527 (535)
Q Consensus       499 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (535)
                      +.|+++|...+++.++.+++++++.+...
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            88999999999988888888887766544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.99  E-value=2e-09  Score=100.21  Aligned_cols=132  Identities=12%  Similarity=0.058  Sum_probs=100.9

Q ss_pred             HHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchh
Q 009409          159 FWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERS  238 (535)
Q Consensus       159 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~  238 (535)
                      .+.-.-|.++.+++.||+|||+++..+.++++++.++.. .+.+-..+.+..|..-++.++.+.+.+.|..|++|..-|+
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~-~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLT-TCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            344557889999999999999999999999999887764 3333234444444555555666778899999999999999


Q ss_pred             hHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhcccCC
Q 009409          239 RAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGE  293 (535)
Q Consensus       239 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  293 (535)
                      ...|....+.-+|+++.|+++  +....+-..+..+.+.+.++..+..+++|-+.
T Consensus       470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            999999999999999999999  33334445566666777777777777777544

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.99  E-value=3.5e-08  Score=97.20  Aligned_cols=133  Identities=10%  Similarity=-0.005  Sum_probs=102.4

Q ss_pred             HHHhhHHHHHHHhCCChhh-HHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 009409          355 CLSWLPTYFSEELSLNLTE-AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG  433 (535)
Q Consensus       355 ~~~~~p~~l~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (535)
                      ...+...++.+.+|++..+ .|.+...+..+..+..+.+|+++||+|.|         ..+.++.+...+...+..+. .
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa-~  113 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLG-T  113 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHH-H
Confidence            3444455666789999999 99999999999999999999999999865         23333444333333333332 2


Q ss_pred             CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      +...+.+.-+++|++.+... ....++..-+|+++|++++|+.+....+|.++++++++.+. .+|
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g  177 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG  177 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence            34455666788899988877 77788888899999999999999999999999999999944 443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09848 glucuronide transporter; Provisional

Probab=98.94  E-value=4.8e-09  Score=107.20  Aligned_cols=151  Identities=14%  Similarity=0.092  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhh-hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      ...+..++............|.+ .+.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~  311 (448)
T PRK09848        232 MLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF  311 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            33444444444444455556654 44567666555554555567778899999999999999999999988877776665


Q ss_pred             Hhhh-hhhhHHHHHHHHhhhccCCchhhHHHHhhhccccc-------chhhHHHHHHHhhhhHHHHHhhhHHHhccccch
Q 009409          197 PLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLE-------ERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (535)
Q Consensus       197 ~~~~-~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (535)
                      .... ++++.+++..++.|+|.+...+...++.+|..+.+       ++|..+|..+....+|..+|+.+.+.+.+..|+
T Consensus       312 ~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        312 FWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4322 34566667788899999999999999999988754       358999999999999999999999988765554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.91  E-value=7.9e-09  Score=109.13  Aligned_cols=152  Identities=13%  Similarity=0.151  Sum_probs=111.4

Q ss_pred             HHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC---------
Q 009409          362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL---------  432 (535)
Q Consensus       362 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  432 (535)
                      -++++++++..+.|++.+...++.+++.++.+++.||.++++.         +.++.++.++..++.....         
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~---------i~~g~ll~~lg~ll~alphf~~~~y~~~  128 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV---------IGIGCAIMGLGSFLLSLPHFLSGRYSYS  128 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE---------EEecHHHHHHHHHHHhChHHhcCCcccc
Confidence            4456799999999999999999999999999999999987633         2223333333332222210         


Q ss_pred             ----------------------------------------C-CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhH
Q 009409          433 ----------------------------------------G-LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASI  471 (535)
Q Consensus       433 ----------------------------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  471 (535)
                                                              . ....++++-++.|++.+...+....++.+.+++++|+.
T Consensus       129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~  208 (633)
T TIGR00805       129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL  208 (633)
T ss_pred             ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence                                                    0 12234567788888888888888888888899999999


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhcccC---------------------cchHHHHHHHHHHHHHHHhhhhh
Q 009409          472 LLGITNTVGAVPGIVGVALTGYLLDSTH---------------------SWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       472 ~~g~~~~~~~lg~~igp~i~G~l~~~~g---------------------~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      +.|+.+....+|..+|+.++|++.+.+.                     .|...|++.+++.++.++.++.+
T Consensus       209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999886542                     25566777776666655544433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.90  E-value=2.9e-08  Score=91.77  Aligned_cols=373  Identities=13%  Similarity=0.066  Sum_probs=219.5

Q ss_pred             cccCCCccchh-HHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCc
Q 009409          142 HRFGWNSSVAG-LVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS  220 (535)
Q Consensus       142 ~~~g~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~  220 (535)
                      .+.|++..+.. -+.-...-.+.+.-++.=.+.|....|++++.-.+.....-.++ .+.++.+.+=+.-++.|...+ .
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l-v~g~sV~~mQvlE~FyG~~tA-a  111 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML-VFGPSVKAMQVLEFFYGPATA-A  111 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHH-HhcCCchheeeehhhcChHHH-H
Confidence            44566655543 12222222344444555568899888998887655544444333 467777777788888888754 4


Q ss_pred             hhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc--cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 009409          221 PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN--LGWESVFYIFGLLGIAWFSGFKILQEGETSNGA  298 (535)
Q Consensus       221 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (535)
                      ..+.++++-...+|+++.++.|...+..-.|-..|..++-.+...  .++...=++......+......++|..++....
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f  191 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYF  191 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhh
Confidence            456778888888999999999999999999999999888887753  344444444444445556666777776633221


Q ss_pred             CCCcchhhh-hhhhhhh-hhHHH-hccC--CCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCChh
Q 009409          299 TLAPRSNYI-NMKKSLS-ASLEE-MGES--LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL-SLNLT  372 (535)
Q Consensus       299 ~~~~~~~~~-~~~~~~~-~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~  372 (535)
                      ...+++... +.++... .+..+ .+..  .-...+....+||.+..-.+-..+..++++.+.++.....++.- +-...
T Consensus       192 ~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~v  271 (433)
T KOG3810|consen  192 HRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANV  271 (433)
T ss_pred             hcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhh
Confidence            111111100 0000000 00000 0000  00112345678888888888888899999999998888886542 11122


Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhh
Q 009409          373 EAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSF  452 (535)
Q Consensus       373 ~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  452 (535)
                      .-|..-++..+.++++.++.|++.-++.+.       +...+.++.+.-+.++++.. ...+.++..++.++........
T Consensus       272 yNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~-~t~~Iw~~Ya~yvlfr~~y~l~  343 (433)
T KOG3810|consen  272 YNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMA-QTQHIWVCYAGYVLFRVIYQLT  343 (433)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhh-cccceehhhhhHHHHHhhHhhh
Confidence            234455666677777777777775544322       33444444333333333333 3445666677777776666666


Q ss_pred             hhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC----------cchHHHHHHHHHHHHHHHhhhhh
Q 009409          453 ALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH----------SWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       453 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g----------~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      .......++.+...|.-|..+|++.++.-+-..   ++.-.+.|..|          -|..-|.+.+.+.++...+.+..
T Consensus       344 itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQs---ilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  344 ITIATFQIARNLSSELFGLVFGINTFVALILQS---ILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             hhHHHHHHHHhhhhhhheeeeehHHHHHHHHHH---hheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            666666677778889999999998886654333   33333444211          24445666666666665655544


Q ss_pred             ccCCC
Q 009409          523 FASSK  527 (535)
Q Consensus       523 ~~~~~  527 (535)
                      .++.+
T Consensus       421 ~~~~~  425 (433)
T KOG3810|consen  421 CRRNK  425 (433)
T ss_pred             hhcCC
Confidence            44433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.90  E-value=8.5e-08  Score=96.71  Aligned_cols=182  Identities=14%  Similarity=0.086  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH----HHHcCCCchhHHHH
Q 009409          337 AVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADN----LIATGVETTMVRKI  412 (535)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr----~~~~~~~~~~~~~~  412 (535)
                      ++..+....+...+++.....+++.|++ .+|.+....++++....+.+++..++.|+++||    +|+|        +.
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR--------rp   75 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR--------RP   75 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh--------HH
Confidence            3344455555666666667788888885 689999999999999999999999999999995    7765        23


Q ss_pred             HHHHHHHHHHHHHHHhhhcCC------------Cc----HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcch--hHHHH
Q 009409          413 CQTIAFLSPAVCMTLSSIDLG------------LP----HWEIVGILTAGLALSSFALSGLYCTHQDISPEYA--SILLG  474 (535)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--g~~~g  474 (535)
                      .+..+.+...+.+.+.....+            ..    ...++++.+..++......+....+.+..|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            333333333333333322111            00    1222333344445555666667777787887755  68999


Q ss_pred             HHHHhhhhhhhHHHHHHHHH--hccc------------CcchHHHHHHHHHHHHHHHhhhhhccCCC
Q 009409          475 ITNTVGAVPGIVGVALTGYL--LDST------------HSWSMSLFAPSIFFYLTGTIVWLAFASSK  527 (535)
Q Consensus       475 ~~~~~~~lg~~igp~i~G~l--~~~~------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (535)
                      +.+...++|..+|+.++|+.  .+.+            .++...|++.++++++..++..+..++..
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            99999999999999999875  2221            15677888877777777666666665543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.90  E-value=6.2e-08  Score=95.84  Aligned_cols=166  Identities=10%  Similarity=-0.007  Sum_probs=105.7

Q ss_pred             HHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 009409          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (535)
Q Consensus       353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (535)
                      ..+...+|.++++ .|++..+.|++... .+...+ .++.|+++||++.|+..+   |+..+..+.+..++.........
T Consensus         5 ~~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Gr---r~~~l~~~~~~~~~~~~~l~~~~   78 (356)
T TIGR00901         5 GLVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGR---RRSWLVLTQVLLLSLLLILSFLV   78 (356)
T ss_pred             hhHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCc---cHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456678888864 69999999988644 444444 889999999984321110   23222333333333322222221


Q ss_pred             C-CcH-HHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCc-------chH
Q 009409          433 G-LPH-WEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHS-------WSM  503 (535)
Q Consensus       433 ~-~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~-------~~~  503 (535)
                      + ... ......++.+.+.+...+.....+.+..++++|+.+.|+......+|.++++.+++.+.+..|.       |..
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence            1 222 2222333445555555566666777878999999999999999999999999999999988742       888


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc
Q 009409          504 SLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      .|.+.+++.++..+..++..+
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            898877765554444333333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.90  E-value=3.1e-11  Score=123.53  Aligned_cols=182  Identities=21%  Similarity=0.123  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+..+.+..+....+......+.+.+.++.+.+..  -+......+...++.+++..+.||+|||++++.+..+.++
T Consensus       251 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  251 RKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAI  328 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            34444444444444445555566667788888888777  2222233345556777888999999999999999888777


Q ss_pred             HHHHHH---hh-hhh----hhHHHHHHHHhhhc-cCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh
Q 009409          192 ATALLP---LL-AGF----MPGLVLSRVLVGIG-EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (535)
Q Consensus       192 ~~~~~~---~~-~~~----~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (535)
                      +.+.++   .. .++    -...+++-.+..++ ..+..+..+.+.+|.+|.+.|++..++......++.++++.+...+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~  408 (451)
T PF00083_consen  329 CSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYL  408 (451)
T ss_pred             cccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            766553   11 111    01112222222222 2234466678889999999999999999999999999999998888


Q ss_pred             ccccchhHHHHHHHHHH-HHHHHHhhhcccCCCC
Q 009409          263 IENLGWESVFYIFGLLG-IAWFSGFKILQEGETS  295 (535)
Q Consensus       263 ~~~~gw~~~f~~~~~~~-~~~~~~~~~~~~~~~~  295 (535)
                      .+..+-...|++.+++. +...+..+++||++..
T Consensus       409 ~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  409 FNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            87776333455544444 4445666777877654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.90  E-value=5.5e-09  Score=107.36  Aligned_cols=153  Identities=13%  Similarity=0.014  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHH
Q 009409          116 IGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATAL  195 (535)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  195 (535)
                      +..+.+..++............+.+.+...-+....+++.++..++..++.+++++++||+|+|+.+.++..+..++.+.
T Consensus       233 ~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~  312 (473)
T PRK10429        233 LSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV  312 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            33344444444555555666666666655445666777777777888999999999999999999999888776655544


Q ss_pred             HHh----hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhccc-------ccchhhHHHHHHHhhhhHHHHHhhhHHHhcc
Q 009409          196 LPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-------LEERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (535)
Q Consensus       196 ~~~----~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (535)
                      ...    ..++.+.+++..++.|++.+...+...++++|..+       .+..|..+|......-+|..+++.+.|++.+
T Consensus       313 ~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        313 LLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322    13445566777788899999999999999999865       3345668999999999999999999999886


Q ss_pred             ccch
Q 009409          265 NLGW  268 (535)
Q Consensus       265 ~~gw  268 (535)
                      ..|+
T Consensus       393 ~~Gy  396 (473)
T PRK10429        393 LIGY  396 (473)
T ss_pred             HcCC
Confidence            5554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.89  E-value=2.7e-08  Score=83.56  Aligned_cols=134  Identities=12%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhh
Q 009409          378 SILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGL  457 (535)
Q Consensus       378 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  457 (535)
                      .....++..++.++.+++.||+++|         ...........+....... .++.....+..++.+++.+...+...
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~   73 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK---------PVLLVGLFIFVLSTAMFAL-SSNITVLIIARFLQGFGAAFALVAGA   73 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh---------HHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4556778889999999999999865         2222333333333322222 23344455556677777776666666


Q ss_pred             hhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          458 YCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       458 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      ....+..++++|+++.++.+....+|..++|.+.|.+.+.. ++...+.+.+++.++..+..+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880        74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhc
Confidence            77778788999999999999999999999999999999876 47777777666555554444443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.88  E-value=8e-08  Score=90.07  Aligned_cols=166  Identities=15%  Similarity=0.049  Sum_probs=132.0

Q ss_pred             HHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhccc-CCchhhHHHHHHHHHHHHHHHhhh
Q 009409          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWSLATALLPLLA  200 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~  200 (535)
                      .+-++.+..+..-.++|.+..|.|+|..+.|++.+...+......+....+.+|. ++|+..+...+++.++.+.+.+..
T Consensus       216 fmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P  295 (395)
T COG2807         216 FMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP  295 (395)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            3334556667778889999999999999999999999999999999999999965 567777777677667766665444


Q ss_pred             hhhhHHHHHHHHhhhccCCchhhHHHHhhhccc-ccchhhHHHHHHHhhhhHHHHHhhhHHHhcccc-chhHHHHHHHHH
Q 009409          201 GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIP-LEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLL  278 (535)
Q Consensus       201 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-gw~~~f~~~~~~  278 (535)
                      .+  ..+...++.|+|.+..++....++.+..+ +++.++..+..+..+.+=..+||.+.|++.|.. +|+..++..+..
T Consensus       296 ~~--~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~  373 (395)
T COG2807         296 GQ--LPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA  373 (395)
T ss_pred             hh--HHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence            33  22222599999999999999999988874 567788888888888888999999999999875 599999888877


Q ss_pred             HHHHHHHhhhc
Q 009409          279 GIAWFSGFKIL  289 (535)
Q Consensus       279 ~~~~~~~~~~~  289 (535)
                      .+++.+.-+..
T Consensus       374 ~i~m~i~Gl~a  384 (395)
T COG2807         374 TLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHhhc
Confidence            77666554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.85  E-value=7.6e-08  Score=94.34  Aligned_cols=179  Identities=13%  Similarity=0.094  Sum_probs=135.2

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhC----CChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHH
Q 009409          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELS----LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVR  410 (535)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~  410 (535)
                      .|.++.+...-+.--+++|++...+..|+...++    ++.+++.-++..+....=+..+++||++||+-.+       |
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~-------~   92 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT-------R   92 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch-------h
Confidence            4677788888899999999999999999988888    9988887777766666667788899999998654       3


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcc--hhHHHHHHHHhhhhhhhHH
Q 009409          411 KICQTIAFLSPAVCMTLSSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY--ASILLGITNTVGAVPGIVG  487 (535)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~ig  487 (535)
                       ..+.++.++..+.-+++.... ......++++.+++++.+.+=+.....+.+..++++  |-.++++..+..++|+.++
T Consensus        93 -~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~  171 (498)
T COG3104          93 -RTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA  171 (498)
T ss_pred             -HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence             334444555555555444432 345567777778888888888877777777766533  6778888999999999999


Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          488 VALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       488 p~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      |.+.+++.+.+| |...|...++-..++.+..++.
T Consensus       172 p~i~~~~~~~~g-~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         172 PIITGLLAINYG-WHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             HHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999985 9999988776555544443333

>PRK09669 putative symporter YagG; Provisional

Probab=98.84  E-value=2.3e-08  Score=101.99  Aligned_cols=141  Identities=10%  Similarity=0.054  Sum_probs=101.4

Q ss_pred             hhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhh-hhhhhHH
Q 009409          128 MDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL-AGFMPGL  206 (535)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l  206 (535)
                      ......+...+.+.++.--+....+.+.....++..++.+++++++||+|+|+.+..+.++.+++.+..... .++.+.+
T Consensus       243 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (444)
T PRK09669        243 TAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLI  322 (444)
T ss_pred             HHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence            333333333344434332233444556666677778888999999999999999998877665444333222 3556667


Q ss_pred             HHHHHHhhhccCCchhhHHHHhhhcccc-------cchhhHHHHHHHhhhhHHHHHhhhHHHhccccch
Q 009409          207 VLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (535)
Q Consensus       207 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (535)
                      ++..++.|++.+...+...++++|..+.       +..|..++..+....+|..+|+.++|.+.+..|+
T Consensus       323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8888899999999999999999998852       2346678889999999999999999998876665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.1e-08  Score=102.89  Aligned_cols=179  Identities=14%  Similarity=0.032  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhc-ccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCc---------hhhH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSH-RFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR---------KVLQ  183 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r---------~~~~  183 (535)
                      ..+..+.+..+........+..+.|.+.+ -+|++..+.|++.++..+...+..+++|.++||.-+|         ..-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            34556677777888888889999999555 5899999999999999999999999999999987552         2333


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCc-hhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh
Q 009409          184 TGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVS-PSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (535)
                      ++....+++.+++++.........+.-+..+.+..+. .+....-..|.. ++.-+..+|+.+....++.+++|.+.+.+
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            4445555555555444422221222222222222222 233333333334 48889999999999999999999999999


Q ss_pred             ccc---cchhHHHHHHHHHHHHHHHHhhhcccCC
Q 009409          263 IEN---LGWESVFYIFGLLGIAWFSGFKILQEGE  293 (535)
Q Consensus       263 ~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~  293 (535)
                      .+.   ..||++|++.+++.++..+++.++-..+
T Consensus       417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e  450 (466)
T KOG2532|consen  417 VTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGE  450 (466)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHhchheeEeecCc
Confidence            842   4799999999998888776666664333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.83  E-value=2.1e-08  Score=94.17  Aligned_cols=143  Identities=12%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             hHHHHHhhHHHHHHHhC----CChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009409          352 HYTCLSWLPTYFSEELS----LNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (535)
                      .|.+.++....++...|    -+...+|++-+.++++..+.++..|.++||+|||         ..+.++.+..++...+
T Consensus        44 L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk---------pvll~c~~~va~s~ll  114 (451)
T KOG2615|consen   44 LYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRK---------PVLLACLIGVALSYLL  114 (451)
T ss_pred             hhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCch---------HHHHHHHHHHHHHHHH
Confidence            34444555444544333    3556789999999999999999999999999964         5555666655655555


Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc---ccCcchHH
Q 009409          428 SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD---STHSWSMS  504 (535)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~---~~g~~~~~  504 (535)
                      .... .+....++.-++.|++-+. ......++.+.+++++|+.+++.+++..++|.++||.++|++.+   ..|+|..+
T Consensus       115 ~~~S-~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~a  192 (451)
T KOG2615|consen  115 WALS-RNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFA  192 (451)
T ss_pred             HHHH-HHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchH
Confidence            4442 2222223335666666554 44556677788899999999999999999999999999999998   56666554


Q ss_pred             H
Q 009409          505 L  505 (535)
Q Consensus       505 ~  505 (535)
                      +
T Consensus       193 l  193 (451)
T KOG2615|consen  193 L  193 (451)
T ss_pred             H
Confidence            4

>PTZ00207 hypothetical protein; Provisional

Probab=98.79  E-value=7.3e-07  Score=92.04  Aligned_cols=162  Identities=10%  Similarity=-0.002  Sum_probs=103.1

Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (535)
                      ....|.+..+.|. +++.+|++..+.+.+...... ...+.++.|++.||+|+|         ....++.+...+..++.
T Consensus        40 ~g~~y~fsv~s~~-L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R---------~vllig~ll~~iG~ll~  108 (591)
T PTZ00207         40 TSFMYAFNLISGA-MQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPR---------PIFVLSMTVFCLGTLLF  108 (591)
T ss_pred             HHHHHHHHHHHHH-HHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHH
Confidence            3344566666665 456789999999988765333 335666789999999864         34444444444444444


Q ss_pred             hhcC-----CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchH
Q 009409          429 SIDL-----GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSM  503 (535)
Q Consensus       429 ~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~  503 (535)
                      ....     .+.+.+.+..++.|++.+...+.......+.+ |++||.+.|+......+|+++.+.+...+...  ++..
T Consensus       109 ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~F-p~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~  185 (591)
T PTZ00207        109 ALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVF-PSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSA  185 (591)
T ss_pred             HHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHH
Confidence            3321     23333445556667666655565555555545 68899999999999999998655555444432  4666


Q ss_pred             HHHHHHHHHHHHHHhhhhhcc
Q 009409          504 SLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      .|++.+++.++..++.+.+.+
T Consensus       186 ~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        186 YFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHhhee
Confidence            677766666666555555544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.79  E-value=1.5e-07  Score=90.48  Aligned_cols=161  Identities=34%  Similarity=0.496  Sum_probs=127.5

Q ss_pred             HHHHHHHhhhhhhHhhhhhhhcccCCCc--cchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHh
Q 009409          121 LAFVICNMDKVNLSVAIIPMSHRFGWNS--SVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPL  198 (535)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~  198 (535)
                      ...+....+........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.++...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~   88 (338)
T COG0477           9 LAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL   88 (338)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence            3344444666777778888888887766  58899999999999999999999999999998888887654455444433


Q ss_pred             hhh-hhhHHHHHHHHhhhccCCchhhHHHHhhhcccc-cchhhHHHHHHH-hhhhHHHHHhhhHHHhccc--cchhHHHH
Q 009409          199 LAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-EERSRAVSFVFG-GLSFGSVAGLLLAPPIIEN--LGWESVFY  273 (535)
Q Consensus       199 ~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l~~~--~gw~~~f~  273 (535)
                      ... +.+.+++.|++.|++.+...+...+++.+++++ ++|+...+.... ...+|..++|.+++.+...  .+||+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (338)
T COG0477          89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL  168 (338)
T ss_pred             CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            333 478899999999999999999999999999987 678999999888 5888999999888777654  67999777


Q ss_pred             HHHHHHHH
Q 009409          274 IFGLLGIA  281 (535)
Q Consensus       274 ~~~~~~~~  281 (535)
                      +.......
T Consensus       169 ~~~~~~~~  176 (338)
T COG0477         169 LAALLGLL  176 (338)
T ss_pred             HHHHHHHH
Confidence            76655543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.8e-08  Score=96.95  Aligned_cols=183  Identities=13%  Similarity=0.046  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhH--------HHHHH-HHHHHhhhccchhhhcccCCchhhHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGL--------VQSSF-FWGYALSQLPGGWLAKIFGGRKVLQT  184 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~s~~-~~~~~~~~~~~g~l~dr~g~r~~~~~  184 (535)
                      +.++..+..+|+.....+..+.....+.+..|+.+.+...        ...+. ..++..+-.+...++|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5566667778877777777777788888888876555443        11111 22333466778899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhh-ccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhH
Q 009409          185 GVLIWSLATALLPLLAGF----MPGLVLSRVLVGI-GEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (535)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (535)
                      +.+++++..+.++ ...+    ...++++..+..+ +.-+.......+-+|.+|.+-|+..-|+..+.+-+|+++|....
T Consensus       384 GF~~~~i~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F  462 (538)
T KOG0252|consen  384 GFFIMTIFFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGF  462 (538)
T ss_pred             hHHHHHHHHHHHc-CCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHh
Confidence            9999998887765 3333    1223333323222 22233445566778999999999999999999999999999999


Q ss_pred             HHhcc-----ccchhHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 009409          260 PPIIE-----NLGWESVFYIFGLLGIAWFSGFKILQEGETSNG  297 (535)
Q Consensus       260 ~~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  297 (535)
                      .++.+     ..|.|++|++.+.+.++..+..+++||++.+..
T Consensus       463 ~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l  505 (538)
T KOG0252|consen  463 LYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSL  505 (538)
T ss_pred             hHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence            99998     789999999999999999999999997665443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.3e-06  Score=83.37  Aligned_cols=159  Identities=14%  Similarity=0.064  Sum_probs=117.5

Q ss_pred             HHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh--
Q 009409          353 YTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI--  430 (535)
Q Consensus       353 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  430 (535)
                      ...+..+-..+++.++++..+++++...+..+..++.+..+++.+|+|.|         ..+.+++.+.++.+.++..  
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk---------~gi~lgL~l~avg~~lF~pAa   99 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK---------AGIVLGLLLYAVGAALFWPAA   99 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHhhhh
Confidence            33444455566689999999999999999999999999999999999965         3444555555555555432  


Q ss_pred             cCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc-------------
Q 009409          431 DLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS-------------  497 (535)
Q Consensus       431 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~-------------  497 (535)
                      ...+....++++++.+.+.+........++...-+++..+.-+.+...+..+|++++|.+++.+..+             
T Consensus       100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            2233344455667788888888888888888878888889999999999999999999999999883             


Q ss_pred             -----cCcchHHHHHHHHHHHHHHHhhh
Q 009409          498 -----THSWSMSLFAPSIFFYLTGTIVW  520 (535)
Q Consensus       498 -----~g~~~~~~~~~~~~~~~~~~~~~  520 (535)
                           ..++...+...+..+++..+...
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~  207 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLIL  207 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                 23456666666554444444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.71  E-value=1.2e-07  Score=93.84  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhh-hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      +-+...++.+++.....++.+.....+ ..-+|.+.....+.......+..++.+++.++.+|+|+|+++..+.++..++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~  315 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG  315 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence            444445556666666777777666664 3446777777778888888888888999999999999999999999999999


Q ss_pred             HHHHHhhh-hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccc-------cchhhHHHHHHHhhhhHHHHHhhhHHHhcc
Q 009409          193 TALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPL-------EERSRAVSFVFGGLSFGSVAGLLLAPPIIE  264 (535)
Q Consensus       193 ~~~~~~~~-~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  264 (535)
                      .++..+.. ++...+++..++.++|.+...+..+++++|..+-       +.-|...+......-+|.+++..+.|++.+
T Consensus       316 ~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         316 YLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88875544 4567788888999999999999999999987642       334778888888888999999988888876


Q ss_pred             ccc
Q 009409          265 NLG  267 (535)
Q Consensus       265 ~~g  267 (535)
                      ..|
T Consensus       396 ~~G  398 (467)
T COG2211         396 AIG  398 (467)
T ss_pred             HcC
Confidence            544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.70  E-value=3.3e-05  Score=78.08  Aligned_cols=277  Identities=11%  Similarity=0.013  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHH-HHHhhhccchhhhcccCCchhhHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVLIWS  190 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (535)
                      ++-++.+.+.+|+..+..+..-..=.. +....  .+..+..+-....+ ...++..+..++++++++.+++-+....+.
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            344445555555555554444333222 11111  55666666665555 344567788999999999998887766655


Q ss_pred             HHHHHHHhhh--------hh----------------------hhHHHHHHHHhhhccCCchh-hHHHHhhhcccccchhh
Q 009409          191 LATALLPLLA--------GF----------------------MPGLVLSRVLVGIGEGVSPS-AATDLIARSIPLEERSR  239 (535)
Q Consensus       191 ~~~~~~~~~~--------~~----------------------~~~l~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~r~~  239 (535)
                      ....+.+++-        ++                      .|...+...+.-+-.+...+ .-+.+..|.++.+|..+
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKR  180 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKR  180 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5554444320        00                      01222333333333334333 46888999999999999


Q ss_pred             HHHHHHHhhhhHHHHHhhhHHHhcc---------ccchhHHHHHHH----HHHHHHHHHhhhcccCCCCCCCCCCcchhh
Q 009409          240 AVSFVFGGLSFGSVAGLLLAPPIIE---------NLGWESVFYIFG----LLGIAWFSGFKILQEGETSNGATLAPRSNY  306 (535)
Q Consensus       240 ~~~~~~~~~~~g~~~g~~~~~~l~~---------~~gw~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (535)
                      ..+++..+.++|.++++.+..++.+         ...|...+....    +.+++.......+.+....++... +..+.
T Consensus       181 fYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-~~~~~  259 (491)
T PF03219_consen  181 FYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-PSAKK  259 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-hhhhc
Confidence            9999999999999999999988877         123554333222    222222333333332211111110 00000


Q ss_pred             hhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhH---HHHHhhHHH
Q 009409          307 INMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEA---AWVSILPPL  383 (535)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~---g~~~~~~~~  383 (535)
                      ..++         ..+..-...++.++++|.+..+.+...+++.....+....-..+++.+.-+....   |-.....++
T Consensus       260 ~kk~---------k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGi  330 (491)
T PF03219_consen  260 KKKK---------KPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGI  330 (491)
T ss_pred             cccc---------CCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHH
Confidence            0000         0000112346788899999998888888888777776666666665543332222   334455566


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 009409          384 ASVLVTSIAAQFADNLIA  401 (535)
Q Consensus       384 ~~~~~~~~~g~l~dr~~~  401 (535)
                      ..++..++++.+.+|+|-
T Consensus       331 vtii~~~l~~~iir~~GW  348 (491)
T PF03219_consen  331 VTIIMMFLSSNIIRRFGW  348 (491)
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            666666777888888774

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.69  E-value=4.2e-08  Score=96.23  Aligned_cols=167  Identities=17%  Similarity=0.110  Sum_probs=141.6

Q ss_pred             HHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhh
Q 009409          122 AFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAG  201 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  201 (535)
                      ..++.+.+...+..++-...+|.|-.....|........+-++.-++.+++.+|+|+-+++..++.+.++=.+..+ ..+
T Consensus       379 ~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S-~L~  457 (618)
T KOG3762|consen  379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS-YLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH-Hhc
Confidence            3334445555555666667888998888889888888888888889999999999999999999999888777765 567


Q ss_pred             hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHh-hhhHHHHHhhhHHHhccccchhHHHHHHHHHHH
Q 009409          202 FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG-LSFGSVAGLLLAPPIIENLGWESVFYIFGLLGI  280 (535)
Q Consensus       202 ~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~  280 (535)
                      |.|+.+-.-+++|+..+.++....+|+++..||+-|+.+.++.... .++|-.+|.++||.+.+.+|-|..|++.++.++
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl  537 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACL  537 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHH
Confidence            7799999999999999999999999999999999999999997764 569999999999999999999999999998887


Q ss_pred             HHHHHhhhc
Q 009409          281 AWFSGFKIL  289 (535)
Q Consensus       281 ~~~~~~~~~  289 (535)
                      +.++....+
T Consensus       538 ~~l~~~~~i  546 (618)
T KOG3762|consen  538 VTLALFISI  546 (618)
T ss_pred             HHHHHHHHh
Confidence            766555443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.68  E-value=0.00017  Score=70.87  Aligned_cols=276  Identities=12%  Similarity=-0.008  Sum_probs=156.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccC---CCccchhHHHHHHHH-HHHhhhccchhhhcccCCchhhHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFG---WNSSVAGLVQSSFFW-GYALSQLPGGWLAKIFGGRKVLQTGVL  187 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~  187 (535)
                      .++-++.+.+.+++..+..+..-    .+.+.+.   ..+..+.++-+...+ +..+..++.+++.+++.+.+++-+.+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            34444444444444444433333    3444443   356667788888877 666888999999999999999887777


Q ss_pred             HHHHHHHHHHhhhh--------h-----------h------------hHHHHHHHHhhhccCCchh-hHHHHhhhccccc
Q 009409          188 IWSLATALLPLLAG--------F-----------M------------PGLVLSRVLVGIGEGVSPS-AATDLIARSIPLE  235 (535)
Q Consensus       188 ~~~~~~~~~~~~~~--------~-----------~------------~~l~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~  235 (535)
                      .+....+++++.-.        +           .            |...+...+.-+-.+.... .-+....|....+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            66666655544321        0           0            2222222222232233333 4567778888889


Q ss_pred             chhhHHHHHHHhhhhHHHHHhhhHHHhcccc-c---------hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchh
Q 009409          236 ERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-G---------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSN  305 (535)
Q Consensus       236 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g---------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (535)
                      |..+-+++++.+.+++..++..+..++.++. .         .+..+.+.++.+++++....++.+.-..++....+..+
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~  260 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKK  260 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhc
Confidence            9999999999999999999999998887632 1         34445555555555555555443322211110000000


Q ss_pred             hhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHH---HHHhhHH
Q 009409          306 YINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAA---WVSILPP  382 (535)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g---~~~~~~~  382 (535)
                      ..+.++         .+..-...++.+.++|.++.+.+...+++.+...+-...-.-.++.+-.+.+...   .+....+
T Consensus       261 kk~~~k---------~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tg  331 (509)
T COG3202         261 KKKKKK---------LKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTG  331 (509)
T ss_pred             cccccc---------ccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHH
Confidence            000000         0000112457788899999888888888877776655444444444433333332   2333444


Q ss_pred             HH-HHHHHHHHHHHHHHHH
Q 009409          383 LA-SVLVTSIAAQFADNLI  400 (535)
Q Consensus       383 ~~-~~~~~~~~g~l~dr~~  400 (535)
                      +. .++...+++.+.+|.|
T Consensus       332 vv~~v~~~~~~s~~ir~~G  350 (509)
T COG3202         332 VVSLVVFLFPGSNLIRRVG  350 (509)
T ss_pred             HHHHHHHHhhhHHHHHHhh
Confidence            44 3445566777777765

>TIGR00788 fbt folate/biopterin transporter

Probab=98.65  E-value=7.2e-08  Score=98.60  Aligned_cols=151  Identities=14%  Similarity=0.101  Sum_probs=119.3

Q ss_pred             hcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhh---------hhhhHHHHHHH
Q 009409          141 SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLA---------GFMPGLVLSRV  211 (535)
Q Consensus       141 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~  211 (535)
                      .+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+......         ++.+.++...+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            357899999999999999999999999999999999999999999988877764432111         22234556667


Q ss_pred             HhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc-----hhHHHHHHHHHHH---HHH
Q 009409          212 LVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-----WESVFYIFGLLGI---AWF  283 (535)
Q Consensus       212 ~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----w~~~f~~~~~~~~---~~~  283 (535)
                      +.+++.+........++++..|++.+|+..++..+..++|..+++.+++.+.+..|     ++..+....+..+   +.+
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l  439 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL  439 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999999999999999999998877     6555554444332   333


Q ss_pred             HHhhhccc
Q 009409          284 SGFKILQE  291 (535)
Q Consensus       284 ~~~~~~~~  291 (535)
                      ....++|+
T Consensus       440 ~~~~llP~  447 (468)
T TIGR00788       440 PLLHLLPR  447 (468)
T ss_pred             HHHHhCCC
Confidence            33345564

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.59  E-value=2.3e-06  Score=87.44  Aligned_cols=155  Identities=8%  Similarity=-0.002  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Q 009409          341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLS  420 (535)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  420 (535)
                      ..+..+........+..++..|+.+..|+++..+|.+..+.-+.-.+.-++.|+++||...|.-+   .|.++. .+.+.
T Consensus        14 Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr---~rp~il-~g~i~   89 (460)
T PRK11462         14 YGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGK---FRPWVL-FGALP   89 (460)
T ss_pred             hccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCC---cchhHh-HHHHH
Confidence            33444455566667778899999999999999999999999999999999999999986543211   133333 33222


Q ss_pred             HHHHHHHhhhcCCC-----cHHHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCcchhHHHHHHHHhhhhhhhHHHHHHHHH
Q 009409          421 PAVCMTLSSIDLGL-----PHWEIVGILTAGLALSSFALSGLYCTHQD-ISPEYASILLGITNTVGAVPGIVGVALTGYL  494 (535)
Q Consensus       421 ~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  494 (535)
                      .++.+.+....++.     ..+..+..+++..+......+......+. -++++|++..+.......+|..+++.+...+
T Consensus        90 ~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl  169 (460)
T PRK11462         90 FGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL  169 (460)
T ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333322222221     12333333444555555555544444443 3478899999999999999988888887666


Q ss_pred             hcccC
Q 009409          495 LDSTH  499 (535)
Q Consensus       495 ~~~~g  499 (535)
                      .+..|
T Consensus       170 v~~~g  174 (460)
T PRK11462        170 VNLIG  174 (460)
T ss_pred             HHHhC
Confidence            65443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.58  E-value=8.5e-06  Score=79.98  Aligned_cols=374  Identities=10%  Similarity=0.006  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhhhcc--cCCCccchhHHHHHHHHHHHhhhccchhhhc-----ccCCchhhHHH-HHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPMSHR--FGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-----IFGGRKVLQTG-VLI  188 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~-~~~  188 (535)
                      .++.+.|++++.-.......+|.+.++  -+.|.++.+... +....+. .-++|.++.|     |+||||..++= ..+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fS-la~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l   80 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFS-LASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL   80 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeee-eeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence            356677888887776666678888888  788888876432 2222222 3456666666     79999876643 233


Q ss_pred             HHHHHHHHHhhhh------------------h-----hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHH
Q 009409          189 WSLATALLPLLAG------------------F-----MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF  245 (535)
Q Consensus       189 ~~~~~~~~~~~~~------------------~-----~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  245 (535)
                      .++..+..+...+                  .     ...+....++.=+..+.-..+.....-.+..+++++.+..-..
T Consensus        81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt  160 (544)
T PF13000_consen   81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT  160 (544)
T ss_pred             HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence            3333333222110                  0     0012233333334444444555555555667788888888888


Q ss_pred             HhhhhHHHHHhhhHHHhccc----------------cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCC-CCCcchhhhh
Q 009409          246 GGLSFGSVAGLLLAPPIIEN----------------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGA-TLAPRSNYIN  308 (535)
Q Consensus       246 ~~~~~g~~~g~~~~~~l~~~----------------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  308 (535)
                      .+.++|..++-.+.-.+-+.                ..-.....+.|.+.++..+...+++++++.... ...+..+..+
T Consensus       161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~  240 (544)
T PF13000_consen  161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSD  240 (544)
T ss_pred             hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccc
Confidence            88888888776665444320                111222333444444444444455444332111 1100000000


Q ss_pred             ---hhhh-hhhhHH---HhccCCCC---CcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHH
Q 009409          309 ---MKKS-LSASLE---EMGESLKD---VPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVS  378 (535)
Q Consensus       309 ---~~~~-~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~  378 (535)
                         ++.. ..++.+   +.+...-+   ..+.+++|-|.+..+.+..+..-.++.+.-.....-+.| .|++.++.+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~  319 (544)
T PF13000_consen  241 GKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLV  319 (544)
T ss_pred             ccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHH
Confidence               0000 000000   00000000   123456777888888888888877777766667777765 599988877554


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCc-------------hh-----------HHHHHHHHHH-HHHHHH-HHH-hhhc
Q 009409          379 ILPPLASVLVTSIAAQFADNLIATGVET-------------TM-----------VRKICQTIAF-LSPAVC-MTL-SSID  431 (535)
Q Consensus       379 ~~~~~~~~~~~~~~g~l~dr~~~~~~~~-------------~~-----------~~~~~~~~~~-~~~~~~-~~~-~~~~  431 (535)
                      .    ..++..++.|+++.|+.+.+.-.             .+           .+.++..... +++++. ... ..+.
T Consensus       320 l----i~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP  395 (544)
T PF13000_consen  320 L----IDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFP  395 (544)
T ss_pred             H----HhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCC
Confidence            3    34555566666666664322100             00           1111111110 111111 111 1111


Q ss_pred             -CC-CcHHHHHHH----HHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc
Q 009409          432 -LG-LPHWEIVGI----LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS  497 (535)
Q Consensus       432 -~~-~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  497 (535)
                       .+ .+.+.++..    ++..+............-++..+|..-|+.+.+.|++.|+|+-.-..+.=++.|.
T Consensus       396 ~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  396 SDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence             11 112222111    1122222223333444445667899999999999999999998887777677663

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.57  E-value=3.4e-05  Score=79.72  Aligned_cols=155  Identities=19%  Similarity=0.121  Sum_probs=121.4

Q ss_pred             hHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHHHHHHHHHhhhhh---------
Q 009409          133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWSLATALLPLLAGF---------  202 (535)
Q Consensus       133 ~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~---------  202 (535)
                      ..+.+..+..++|.+...+.-..+.+.-.....++.+++++|- +||-+++.++.++..++..+..+.+.-         
T Consensus        57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            3566777888899888888888888888888899999999997 589999999888877775544332211         


Q ss_pred             ---------------hhHHHHHHHHhhhccCCchhhHHHHhhhccc---cc-c--hhhHHHHHHHhhhhHHHHHhhhHHH
Q 009409          203 ---------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIP---LE-E--RSRAVSFVFGGLSFGSVAGLLLAPP  261 (535)
Q Consensus       203 ---------------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~---~~-~--r~~~~~~~~~~~~~g~~~g~~~~~~  261 (535)
                                     ...++...-+..+|.|+.-|...+.-+|-++   ++ +  +..-+.++....++|..++..+..+
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence                           1245666677788999999999999999887   32 2  2367888899999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHhh
Q 009409          262 IIENLGWESVFYIFGLLGIAWFSGFK  287 (535)
Q Consensus       262 l~~~~gw~~~f~~~~~~~~~~~~~~~  287 (535)
                      +-++.||.+.|.+..+..++.+++++
T Consensus       217 iq~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  217 IQDNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hhhcccceeeccHHHHHHHHHHHHHH
Confidence            98899999999998887665554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.56  E-value=5.5e-06  Score=85.18  Aligned_cols=179  Identities=14%  Similarity=0.160  Sum_probs=115.6

Q ss_pred             hhcHHHHHHHHHHHHHhhhhHHH----HHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 009409          333 FRSKAVWAMIYAHFCGSWGHYTC----LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM  408 (535)
Q Consensus       333 ~~~~~~~~~~l~~~~~~~~~~~~----~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~  408 (535)
                      +++++++..+....+.....+..    ...++ ++...+|-+ ....++.....++..++.++.|+++|.+|||      
T Consensus        37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~-~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr------  108 (599)
T PF06609_consen   37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILP-YINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRR------  108 (599)
T ss_pred             eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcch------
Confidence            35566665544444333332222    23344 444456765 4556777888899999999999999999965      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHH
Q 009409          409 VRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGV  488 (535)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp  488 (535)
                         ...+.+.++..+..+.... .++....+.+..+.|++.+... .....+.+..|.+.|....++.....-....++|
T Consensus       109 ---~~~i~g~~l~vvG~Iv~at-A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~  183 (599)
T PF06609_consen  109 ---YFFIIGSLLGVVGSIVCAT-AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISP  183 (599)
T ss_pred             ---HHHHHHHHHHHhHHHHhhc-CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccH
Confidence               5555555555555554443 3455566777888887755443 3344466778888898888777665555555777


Q ss_pred             HHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccC
Q 009409          489 ALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFAS  525 (535)
Q Consensus       489 ~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (535)
                      .++..+... ++|++.|++.++...+..++.+++++.
T Consensus       184 ~ia~~~~~~-~~WRw~~~~~~i~~~i~~vl~~~fY~P  219 (599)
T PF06609_consen  184 LIAQLFAAH-SGWRWIFYIFIIWSGIALVLIFFFYFP  219 (599)
T ss_pred             HHHHHhccC-CCcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            777766655 479999998888766666665555543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.55  E-value=1.9e-06  Score=82.96  Aligned_cols=150  Identities=19%  Similarity=0.163  Sum_probs=122.6

Q ss_pred             hhcccCCCccchhHHHHHHHHHHHhhhccchhhhc-ccCCchhhHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHhhhc
Q 009409          140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAK-IFGGRKVLQTGVLIWSLATALLP--LLAGFMPGLVLSRVLVGIG  216 (535)
Q Consensus       140 ~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~G~~  216 (535)
                      =-+-||++..+..-+.+....+..++-...|++.. |.+++++-.+++.+..++..+..  ....+.+.+...-++.|++
T Consensus       235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g  314 (403)
T PF03209_consen  235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG  314 (403)
T ss_pred             hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            34558999999999999999999999999998887 67888888788777666554432  2334567888999999999


Q ss_pred             cCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc----------cchhHHHHHHHHHHHHHHHHh
Q 009409          217 EGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN----------LGWESVFYIFGLLGIAWFSGF  286 (535)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~----------~gw~~~f~~~~~~~~~~~~~~  286 (535)
                      .|.+.....+.+.+...+++.|..+|.+.....++..++..++|.+.|.          .+|..+|.+.++..++.+++.
T Consensus       315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987652          357788888887776665554


Q ss_pred             hhc
Q 009409          287 KIL  289 (535)
Q Consensus       287 ~~~  289 (535)
                      ..+
T Consensus       395 ~~l  397 (403)
T PF03209_consen  395 GRL  397 (403)
T ss_pred             HHh
Confidence            433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.51  E-value=1.2e-06  Score=90.91  Aligned_cols=183  Identities=19%  Similarity=0.108  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.++.+.+..|.+..+.+.+..+.+.+.+..|.+... .+...+..+...++..++..+.||+|||+.++.+...+.+
T Consensus       293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence            456666777778778877888888899999998887554 5555566666677778889999999999999999999988


Q ss_pred             HHHHHHhhhhh------------hhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhH
Q 009409          192 ATALLPLLAGF------------MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLA  259 (535)
Q Consensus       192 ~~~~~~~~~~~------------~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  259 (535)
                      +.++++.....            +..+....+.......+..+..+.+.+|.+|.+-|+++.++......+...+-....
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~  451 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF  451 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            88776543211            112222233333333444567778899999999999999998888887777665555


Q ss_pred             HHhccccchhHHHHHHHHHHHHHH--HHhhhcccCCCC
Q 009409          260 PPIIENLGWESVFYIFGLLGIAWF--SGFKILQEGETS  295 (535)
Q Consensus       260 ~~l~~~~gw~~~f~~~~~~~~~~~--~~~~~~~~~~~~  295 (535)
                      ..+.+..++...|...+..+.+..  ...+++||++..
T Consensus       452 ~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  452 PFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            555554444556666555554443  355666665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.41  E-value=6.4e-06  Score=69.52  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=97.9

Q ss_pred             CCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhH
Q 009409          145 GWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAA  224 (535)
Q Consensus       145 g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~  224 (535)
                      +++...--.-.++.+....+..++.+.+.+++|.|+.++++.+.+.+-...  .+-++.+.++..-++.|++.+..++..
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~--~~~~~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS--FFYPNSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHhhhhHHhhHhh
Confidence            344444455667777788888999999999999999999999988765544  344556889999999999999999999


Q ss_pred             HHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc
Q 009409          225 TDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (535)
Q Consensus       225 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (535)
                      ..++.+..+++++++..+++......+.++|.++...+.
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988876554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.33  E-value=1.1e-05  Score=81.81  Aligned_cols=150  Identities=11%  Similarity=0.043  Sum_probs=116.8

Q ss_pred             HHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 009409          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT  444 (535)
Q Consensus       365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (535)
                      +..++...+.+.+.+++.++.+++.+.++.+.||+..+        +.+...++......++ ... ..+.+..++.-++
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls--------~~l~~~~~~w~~~~~~-~~~-~~s~~~~ialr~l  143 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLS--------KGLSVSGILWGLFGFL-TAA-VHSFPGLIALRFL  143 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChH--------HHHHHHHHHHHHHHHH-HHH-HhhhHHHHHHHHH
Confidence            55677788889999999999999999999999999632        2222222222222212 111 3445566777889


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc------ccCcchHHHHHHHHHHHHHHHh
Q 009409          445 AGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD------STHSWSMSLFAPSIFFYLTGTI  518 (535)
Q Consensus       445 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~------~~g~~~~~~~~~~~~~~~~~~~  518 (535)
                      .|++-+...|....++..-+.+++++..+|+.++...+|.++|+.++..+.+      .. +|.+.|++.+++.++.+++
T Consensus       144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi~  222 (495)
T KOG2533|consen  144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGIV  222 (495)
T ss_pred             HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHhe
Confidence            9999999999999999998999999999999999999999999999988643      23 5999999999988888888


Q ss_pred             hhhhccC
Q 009409          519 VWLAFAS  525 (535)
Q Consensus       519 ~~~~~~~  525 (535)
                      +++..+.
T Consensus       223 ~f~~lp~  229 (495)
T KOG2533|consen  223 VFFFLPD  229 (495)
T ss_pred             EEEEecC
Confidence            7777654

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.31  E-value=1.6e-06  Score=63.60  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIW  189 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~  189 (535)
                      .+...+|+.+.....+.|++|.+.++.|+|..++|.+.++..+...++++++|.++||+++++..+....++
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            345567777788888999999999999999999999999999999999999999999999999888765543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.30  E-value=1.5e-06  Score=64.08  Aligned_cols=76  Identities=24%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             HHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhh
Q 009409          126 CNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGF  202 (535)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  202 (535)
                      .++++..+++.+|.+.+|.++|.++.|++.+..++||.+|.+...++.++..+++.+..+.+...+..+.++ ..++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma-~~~~   79 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA-LTHS   79 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            457889999999999999999999999999999999999999999999998889999999888877777765 4444

Note that many members are hypothetical proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.25  E-value=5.9e-05  Score=79.52  Aligned_cols=166  Identities=13%  Similarity=0.077  Sum_probs=111.2

Q ss_pred             hhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 009409          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (535)
Q Consensus       351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (535)
                      ++|++...+..|+.+.+|++...+..+...+....-+..+++|+++|++-.+       + ..+.++.++..++..+...
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~-~tIl~~~ii~~lG~~llai   73 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------F-KTILYLSIVYVVGHALLSF   73 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------H-HHHHHHHHHHHHHHHHHHh
Confidence            4577778888898888999999888888777777778888999999998654       2 2233333333333333222


Q ss_pred             cC-CC------cHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc---chhHHHHHHHHhhhhhhhHHHHHHHHHhccc--
Q 009409          431 DL-GL------PHWEIVGILTAGLALSSFALSGLYCTHQDISPE---YASILLGITNTVGAVPGIVGVALTGYLLDST--  498 (535)
Q Consensus       431 ~~-~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~--  498 (535)
                      .. ..      ....++++.+..++.+.+-+.......+.++++   .+-..+.++....++|+.+++.+.+++.+..  
T Consensus        74 ~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        74 GAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             ccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            11 10      122445566666677766666666666666543   4677888899999999999999999997543  


Q ss_pred             -C---cchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          499 -H---SWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       499 -g---~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                       |   +|..+|.+.+++.+++.++.....+
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k  183 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMAGSK  183 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence             2   4778888877766655554444333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.16  E-value=0.00098  Score=63.57  Aligned_cols=153  Identities=13%  Similarity=0.100  Sum_probs=98.1

Q ss_pred             HHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 009409          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT  444 (535)
Q Consensus       365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (535)
                      +.+|++..+++.++....+.+.+...+.|.++||+|+|        +.++..+.+-...++ .  -..++...++++-++
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk--------~~cl~~cily~~scl-~--k~~~~~~~L~~GRvl  130 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK--------KACLLFCILYSLSCL-T--KHSSNYPVLLLGRVL  130 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHHHHH-H--HhccccHHHHHHHHH
Confidence            46899999999999999999999999999999999975        333333333333332 2  223456667777788


Q ss_pred             HHHHHhhhhhhhhhhhh-----hccCCcchhHHHHHHHHh-hhhhhhHHHHHHHHHhcccCc-chHHHHHHHHHHHHHHH
Q 009409          445 AGLALSSFALSGLYCTH-----QDISPEYASILLGITNTV-GAVPGIVGVALTGYLLDSTHS-WSMSLFAPSIFFYLTGT  517 (535)
Q Consensus       445 ~g~~~~~~~~~~~~~~~-----~~~~~~~~g~~~g~~~~~-~~lg~~igp~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~  517 (535)
                      .|++........-.+..     +.+|++..+...+.+... ..+-.+....++-.+.+..+. ...+|....++++++.+
T Consensus       131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~  210 (354)
T PF05631_consen  131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV  210 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            88777766555444332     235556666666666533 334445555566666665542 46677777776666666


Q ss_pred             hhhhhccCCCC
Q 009409          518 IVWLAFASSKP  528 (535)
Q Consensus       518 ~~~~~~~~~~~  528 (535)
                      ++...+++...
T Consensus       211 ~I~~~W~ENyg  221 (354)
T PF05631_consen  211 LILKTWPENYG  221 (354)
T ss_pred             HHHhcccccCC
Confidence            66555555433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.10  E-value=3.7e-05  Score=80.31  Aligned_cols=140  Identities=16%  Similarity=0.048  Sum_probs=108.3

Q ss_pred             HHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 009409          365 EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILT  444 (535)
Q Consensus       365 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (535)
                      +....+.....+..++..++..+|.++.|.++||+|||         .....+.++..++.+...+ ..+.....+.-++
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk---------~~~~~~~~~~~i~~~~~a~-a~~~~~~~~~Rfl  180 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK---------PVLLVSLLLFIIFGILTAF-APNYWMFLIFRFL  180 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH---------HHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            34566777888888999999999999999999999854         4445555555554444443 3455566667788


Q ss_pred             HHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Q 009409          445 AGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTI  518 (535)
Q Consensus       445 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~  518 (535)
                      .|++.+...........+.+++++|+.+..+ ......++.+++..++++..   +|+..+++..+...+..++
T Consensus       181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888999999999999 88888899999999999988   5888888766655554444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.10  E-value=0.0008  Score=67.71  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHH
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVAL  490 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i  490 (535)
                      .+.++.++.++++|+..|...........+.+++++|..+..+++..-.+|-.+|..+
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667778888988888877777777777888888888888888888887777765

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.08  E-value=0.0003  Score=64.51  Aligned_cols=139  Identities=15%  Similarity=0.145  Sum_probs=88.6

Q ss_pred             HHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHH
Q 009409          347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMT  426 (535)
Q Consensus       347 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (535)
                      ......|.+..|-|. +++.+|++..+...+.....++..+ +++.|.+.|+++.+         ....++.....+...
T Consensus        13 ~~~Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~   81 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW---------VVLLIGAVLGFVGYG   81 (250)
T ss_pred             HhcCcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH---------HHHHHHHHHHHHHHH
Confidence            334445666666665 4568999999999998888888876 48899999999854         333444444444333


Q ss_pred             Hhhh--cC---CCcHHHHHHHHHHH-HHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc
Q 009409          427 LSSI--DL---GLPHWEIVGILTAG-LALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS  497 (535)
Q Consensus       427 ~~~~--~~---~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  497 (535)
                      ....  ..   ..+.|......+++ .+...+.........+++| ++||++.|+.-....+++.+-..+...+.+.
T Consensus        82 ~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   82 LLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            2222  11   12344443333222 3323333344444455564 7899999999999999988888887777765

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=98.03  E-value=0.00023  Score=68.94  Aligned_cols=358  Identities=15%  Similarity=0.041  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHh----hhccchhhhcccCCchhhHHHHHHHH
Q 009409          115 LIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYAL----SQLPGGWLAKIFGGRKVLQTGVLIWS  190 (535)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~----~~~~~g~l~dr~g~r~~~~~~~~~~~  190 (535)
                      .....++..+-..+.++.+..+.+++.+++-.+.. .......+.+...+    ....-..+.-|..+|-.+........
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il   97 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL   97 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445557777788888887776644433 33333333333333    33333444444222211111111111


Q ss_pred             -HHHHHHHhh------hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhh---HH
Q 009409          191 -LATALLPLL------AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLL---AP  260 (535)
Q Consensus       191 -~~~~~~~~~------~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~---~~  260 (535)
                       +..+.....      ...+...++.-.+.+++.+..........++ +|++.-...++    +.++++++..++   .-
T Consensus        98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i~tk  172 (406)
T KOG1479|consen   98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRILTK  172 (406)
T ss_pred             HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHHHHH
Confidence             111111110      1224556677778888888887777777665 55443332222    333333332222   22


Q ss_pred             Hhccc--cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHH
Q 009409          261 PIIEN--LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAV  338 (535)
Q Consensus       261 ~l~~~--~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (535)
                      ...+.  .+--..|.+..++.+++++....+++.+-.+.-.+++.+...+..+. +.+.+. ..+..+.+.++++++-.-
T Consensus       173 a~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~~~~l~~~-~~~~~~-~~~~~~~~~~~i~~k~~~  250 (406)
T KOG1479|consen  173 AAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSIGSKLAAE-GIESDS-SLSNEDDSLWDIFKKIKD  250 (406)
T ss_pred             HhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhccccccccccc-cccccc-ccccccchHHHHHHHHHH
Confidence            22221  22333334444444455555554443321111000000000000000 000000 000001133444433221


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCC---ChhhHHHHHhh-HHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 009409          339 WAMIYAHFCGSWGHYTCLSWLPTYFSEELSL---NLTEAAWVSIL-PPLASVLVTSIAAQFADNLIATGVETTMVRKICQ  414 (535)
Q Consensus       339 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~---s~~~~g~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  414 (535)
                      ..     +.....+......+|-+..+..+-   +.....+.... +.+...+|.+...++-++- +|        ....
T Consensus       251 ~~-----~~i~lvy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r--------~l~i  316 (406)
T KOG1479|consen  251 LA-----FNIFLVYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PR--------KLTI  316 (406)
T ss_pred             Hh-----hchheeeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-Cc--------eehH
Confidence            11     111222233344667776554322   23334444555 6777777766555544331 11        1111


Q ss_pred             HHHHHHHHHHHHH------hhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHH
Q 009409          415 TIAFLSPAVCMTL------SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGV  488 (535)
Q Consensus       415 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp  488 (535)
                      ....=...+-+..      ......+..|.+....++|+..|-.......+..+.++++++-.+-.++...-..|-. ..
T Consensus       317 ~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~-~G  395 (406)
T KOG1479|consen  317 PVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLA-LG  395 (406)
T ss_pred             HHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHH-Hh
Confidence            1111111111111      1222456677777788888888877777777777777777665555555544444444 44


Q ss_pred             HHHHHHh
Q 009409          489 ALTGYLL  495 (535)
Q Consensus       489 ~i~G~l~  495 (535)
                      .+.+++.
T Consensus       396 ~~~s~l~  402 (406)
T KOG1479|consen  396 SLLSWVF  402 (406)
T ss_pred             hHHHHHH
Confidence            4444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.94  E-value=6.4e-05  Score=74.72  Aligned_cols=110  Identities=21%  Similarity=0.266  Sum_probs=87.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhh--hhhh------hHHHHHHHHhhhccCCchhhHHHHhhhccccc---chhhHHHHHHHhh
Q 009409          180 KVLQTGVLIWSLATALLPLL--AGFM------PGLVLSRVLVGIGEGVSPSAATDLIARSIPLE---ERSRAVSFVFGGL  248 (535)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~--~~~~------~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  248 (535)
                      |+++++.+++.++.+++...  ....      ..++++.++.++|.|+.-|...++.+|.++++   +|...+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46677778888888774322  2222      46888899999999999999999999999765   4677888899999


Q ss_pred             hhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          249 SFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       249 ~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      ++|..+++.+.+++.++.||.+.|.+.++..++.++.++.-
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999988877666555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.94  E-value=7.6e-05  Score=54.75  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=54.5

Q ss_pred             HHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 009409          341 MIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (535)
Q Consensus       341 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (535)
                      +-..+++...+...+..++|.|+++ .|+|+.+.|.+.++..+..+++.++.|+++||.+++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            4456677777888899999999985 799999999999999999999999999999999875

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.80  E-value=0.00018  Score=71.80  Aligned_cols=182  Identities=12%  Similarity=0.098  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHH-HhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSE-ELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQ  414 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  414 (535)
                      |.++...+..++..........-.=.|+++ ..+-+.+..|++.+...++..+++++.|++..|.+.-        +.-+
T Consensus        34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~--------k~Pl  105 (488)
T KOG2325|consen   34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV--------KKPL  105 (488)
T ss_pred             HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc--------ccCH
Confidence            344555556666555555444444456653 2577788899999999999999999999999987642        1122


Q ss_pred             HHHHHHHHHHHHHh---hhcCC-CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHH
Q 009409          415 TIAFLSPAVCMTLS---SIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVAL  490 (535)
Q Consensus       415 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i  490 (535)
                      +.+.+++.++-+++   ....+ ..++++++-++.|++.+.. ...-.+++....+++|.++++..+...-+|.++||.+
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            23333333332222   22233 4455566667777775543 3444556665667788888888777677777777765


Q ss_pred             HHHHh----c--------ccCcchHHHHHHHHHHHHHHHhhhhhccCC
Q 009409          491 TGYLL----D--------STHSWSMSLFAPSIFFYLTGTIVWLAFASS  526 (535)
Q Consensus       491 ~G~l~----~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (535)
                      ...+.    +        .++.|+.+-++++.+.++..++++..+++.
T Consensus       185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            43222    1        123467777777777777777777766543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.74  E-value=0.00019  Score=65.81  Aligned_cols=324  Identities=15%  Similarity=0.106  Sum_probs=154.5

Q ss_pred             hHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhc
Q 009409          152 GLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARS  231 (535)
Q Consensus       152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~  231 (535)
                      |.+.-+-.+...+..+.+....||+.-..-..+..++-+.+.++. .++++.++-+.+-.+..++.|.......++.+. 
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lV-afs~s~~~sL~GV~~aSissGlGEiTFL~lss~-  142 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLV-AFSNSVPMSLLGVVFASISSGLGEITFLALSSR-  142 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEE-EeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence            444444555666667777778888644333333444545555555 467777888888888888887776665555433 


Q ss_pred             ccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc--ccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhh
Q 009409          232 IPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE--NLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINM  309 (535)
Q Consensus       232 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (535)
                      ++    ....+.+..+.+.++.+|..--.++.+  .++-|.+.++...+.++....++++.+.++.......+...+...
T Consensus       143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~~  218 (409)
T KOG3880|consen  143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEIIP  218 (409)
T ss_pred             CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccceecc
Confidence            33    245566777777777777776666666  356788888887776655555444433333222111111111110


Q ss_pred             hhhhhhhHHHhc-cCCCCCcHHH-hhhcHHHHHHHHHHHHHhhhhHHHHH-hhHHHHHH-HhCCChhh---HHHHHhhHH
Q 009409          310 KKSLSASLEEMG-ESLKDVPWKA-IFRSKAVWAMIYAHFCGSWGHYTCLS-WLPTYFSE-ELSLNLTE---AAWVSILPP  382 (535)
Q Consensus       310 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~~-~~g~s~~~---~g~~~~~~~  382 (535)
                      ++....+..+.+ ........++ +.+-+.++..++-.+..++..|.++. ..++.+-+ ..|++...   .-++-....
T Consensus       219 ~~~~~~~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQ  298 (409)
T KOG3880|consen  219 SQYLPFEAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQ  298 (409)
T ss_pred             CCCCcccccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeee
Confidence            100000000101 0011112222 22223333455555555555555443 22222210 12333222   223334443


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHH-HHHHHHHHHHhhhhhhhhhhhh
Q 009409          383 LASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEI-VGILTAGLALSSFALSGLYCTH  461 (535)
Q Consensus       383 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~  461 (535)
                      ++-.+.+--.         +-.... ..+.+...-++-....++-.........+++ +..+.=|+..+..+.....-+.
T Consensus       299 lGVFiSRSS~---------~~~~~p-~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~  368 (409)
T KOG3880|consen  299 LGVFISRSSI---------NLFTMP-YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIH  368 (409)
T ss_pred             eeEEEEeccc---------eEEech-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHh
Confidence            3332221111         000000 0111111111111111111111122233333 3334445555555556666677


Q ss_pred             hccCCcchhHHHHHHHHhhhhhhhHHHHHH
Q 009409          462 QDISPEYASILLGITNTVGAVPGIVGVALT  491 (535)
Q Consensus       462 ~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  491 (535)
                      ++.+|++|-.+++.......+|..++..++
T Consensus       369 ~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  369 KETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             hcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            779999999999998887777666655544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.71  E-value=0.00085  Score=65.69  Aligned_cols=113  Identities=17%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             CccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHH--HHHHHHHHHh--hhhhhhHHHHHHHHhhhccCCchh
Q 009409          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI--WSLATALLPL--LAGFMPGLVLSRVLVGIGEGVSPS  222 (535)
Q Consensus       147 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~--~~~~~~~~~~--~~~~~~~l~~~~~~~G~~~~~~~~  222 (535)
                      ...+..+...+|.+|-.+++--...+  |+  |++.+.+.+-  ..+..++.+.  +.++.+.+++..+..|+.+|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            35667777777777766654432222  33  4444444332  2222212111  235667888899999999999999


Q ss_pred             hHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc
Q 009409          223 AATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII  263 (535)
Q Consensus       223 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  263 (535)
                      .....+.+-.++++|..++|....+-++|..++.+++-.+-
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998876553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.70  E-value=0.00093  Score=67.46  Aligned_cols=133  Identities=14%  Similarity=0.150  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009409          382 PLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH  461 (535)
Q Consensus       382 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  461 (535)
                      ++..++.....|.++||+|+|         ...........+......+.   .+|.++ ..-...+.+........+.+
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk---------~~L~~~~~~~~l~~~~~~~~---~~~~~~-~~~l~g~~~~~~s~~~a~va  138 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK---------VVLLLPLFGTILPALCLLFQ---GYWFFL-LLGLSGGFSAIFSVGFAYVA  138 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh---------hhHHHHHHHHHHhHHHHHHH---HHHHhh-hcccccchhhhhhhhhhhee
Confidence            677788889999999999976         22222222222211111111   133332 22222233344455566677


Q ss_pred             hccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCCC
Q 009409          462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKP  528 (535)
Q Consensus       462 ~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (535)
                      +....+.|....|+.+.....+..++|.+++.+.+.. ++...|.+.++..++..+....+.++...
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            7788899999999999999999999999999999987 58888888888777777666666665443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.68  E-value=0.0014  Score=66.42  Aligned_cols=160  Identities=18%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             hHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCC---Cc
Q 009409          359 LPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG---LP  435 (535)
Q Consensus       359 ~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  435 (535)
                      ...|+++.+|+++.+...+.....+.- ...++.|.++|-+--.+.+    ||..+.++.++..+..........   +.
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            344677889999999887766665543 4578899999998533332    444445555544333332222122   22


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhc--cCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHH
Q 009409          436 HWEIVGILTAGLALSSFALSGLYCTHQD--ISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFY  513 (535)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~  513 (535)
                      ....+.+++..++........-....+.  -.|+.+|...+.......+|++++..+.|.+.+.. ++...|.+.+++..
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~  165 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPL  165 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHH
Confidence            2333333444444443333333333332  23444899999999999999999999999999987 47777777666555


Q ss_pred             HHHHhhhhhcc
Q 009409          514 LTGTIVWLAFA  524 (535)
Q Consensus       514 ~~~~~~~~~~~  524 (535)
                      +..+..+....
T Consensus       166 l~~~~~~~~~~  176 (433)
T PF03092_consen  166 LMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHhhh
Confidence            55444444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.62  E-value=0.0015  Score=63.70  Aligned_cols=128  Identities=16%  Similarity=0.072  Sum_probs=81.3

Q ss_pred             HHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC-----CC
Q 009409          360 PTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL-----GL  434 (535)
Q Consensus       360 p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  434 (535)
                      ..|.+..|| +...+-+...++.+..++..+.+.|+.||+|-|         ....++...-++...+-....     +.
T Consensus        68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR---------~a~llgt~ln~iGa~Ir~iss~p~v~~~  137 (480)
T KOG2563|consen   68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR---------TALLLGTVLNGIGAWIRLISSLPFVPPL  137 (480)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH---------HHHHHHHHHHHHHHHHhhhccCcccccc
Confidence            335666677 667777888899999999999999999999854         333333333333333222211     11


Q ss_pred             cH--HHHHHHHHHHHHHhhhhhhhhhhhh-hccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc
Q 009409          435 PH--WEIVGILTAGLALSSFALSGLYCTH-QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST  498 (535)
Q Consensus       435 ~~--~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~  498 (535)
                      .+  ....+..+.+.+... ......-++ .-+++++|+++..+..+...+|.++|.++...+..+.
T Consensus       138 f~~~l~~~Gq~iaa~Aq~F-im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  138 FRRPLTHTGQSIAAAAQPF-ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             chhhhhHHhHHHHHHhhhH-hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            12  233444444433322 222222233 3389999999999999999999999988888777654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.53  E-value=0.005  Score=55.86  Aligned_cols=98  Identities=17%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             cchhhHHHHHHHhhhhHHHHHhhhHHHh---c--cccchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhh
Q 009409          235 EERSRAVSFVFGGLSFGSVAGLLLAPPI---I--ENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINM  309 (535)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~--~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (535)
                      ++|+....+...+.++|.++.....-.-   .  -.-.|++++-+.+++.++-++.+..+-.+-+.....  +++++   
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~--~k~~k---   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK--EKQEK---   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc--ccccc---
Confidence            4556666666667777777664432111   1  123599999999988877666666653321111111  00000   


Q ss_pred             hhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHH
Q 009409          310 KKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF  346 (535)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  346 (535)
                               +..+..++...++.+|++..|...+.+.
T Consensus        77 ---------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg  104 (267)
T PF07672_consen   77 ---------ENSTLSKKPSYKSILKEKETWKWILIYG  104 (267)
T ss_pred             ---------ccccccccchHHHHHccchHHHHHHHHH
Confidence                     0001112345688999999887665544

>PRK03612 spermidine synthase; Provisional

Probab=97.27  E-value=0.029  Score=57.97  Aligned_cols=156  Identities=17%  Similarity=0.025  Sum_probs=82.0

Q ss_pred             HHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHH
Q 009409          344 AHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAV  423 (535)
Q Consensus       344 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  423 (535)
                      ..++..++....-....-.+.-.+|-+....+.+.+.+.++..+|+.+++++.++..++      ....-..++.+....
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~------~~~~e~~i~l~~~~~   95 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG------FVAVELLLALLGGLS   95 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHHHHHHHHHH
Confidence            34444444455555555556556788888889888988888889888888776432211      011111111111111


Q ss_pred             HHHHhhh-cC-CCc-HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc-ccC
Q 009409          424 CMTLSSI-DL-GLP-HWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD-STH  499 (535)
Q Consensus       424 ~~~~~~~-~~-~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~-~~g  499 (535)
                      ..++... .. ... ...+...+..++..+...|.... +......++.+...|-......+|+++|+++.|++.- ..|
T Consensus        96 ~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~-~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG  174 (521)
T PRK03612         96 ALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMR-ILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence            1111111 00 000 11112223334444443333322 2222233346778888999999999999999997775 565


Q ss_pred             cchHHHH
Q 009409          500 SWSMSLF  506 (535)
Q Consensus       500 ~~~~~~~  506 (535)
                      .....+.
T Consensus       175 ~~~t~~~  181 (521)
T PRK03612        175 LIRTAAL  181 (521)
T ss_pred             hHHHHHH
Confidence            4444333

>PRK03612 spermidine synthase; Provisional

Probab=97.14  E-value=0.01  Score=61.22  Aligned_cols=156  Identities=16%  Similarity=0.135  Sum_probs=90.6

Q ss_pred             HHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHH-HHHHHH-HHHHHHHh
Q 009409          122 AFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQT-GVLIWS-LATALLPL  198 (535)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~-~~~~~~~~  198 (535)
                      ..|++++....+-..... +..-+|-+..+.+.+.+++.++..+|..+++++.++.-++...+- +..+.+ ++..+...
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~  101 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYA  101 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444333 444578889999999999999999999998887643222221111 111111 11111111


Q ss_pred             hh----hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc-ccchhHHHH
Q 009409          199 LA----GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE-NLGWESVFY  273 (535)
Q Consensus       199 ~~----~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~gw~~~f~  273 (535)
                      ..    .....++...++.++..|...|....+..+... ++-+...|..+....+|+++|.++.+++.- .+|-....+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~  180 (521)
T PRK03612        102 AFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAA  180 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            11    111122344456677777777776666554322 345778889999999999999999887653 566544444


Q ss_pred             HHHHH
Q 009409          274 IFGLL  278 (535)
Q Consensus       274 ~~~~~  278 (535)
                      +.+.+
T Consensus       181 ~~a~l  185 (521)
T PRK03612        181 LTGSL  185 (521)
T ss_pred             HHHHH
Confidence            44443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.13  E-value=0.078  Score=49.78  Aligned_cols=72  Identities=15%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             HHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcc
Q 009409          159 FWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI  232 (535)
Q Consensus       159 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~  232 (535)
                      ++..+...++.+.+..++|-|+++.++...+......  -.-+.+..++-.....|++.+..+...-+++++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~--Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA--NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            3344455566668999999999999987776543322  23344678888899999999999988888877654

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.00  E-value=0.14  Score=51.23  Aligned_cols=184  Identities=10%  Similarity=0.156  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      +..+.+.+..++..++.-...+..|.++.+.+.-+..-.+.+-..-.+..++.+...|.+.||..|.+.-.  .-....-
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~--~~l~~Qn   79 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIR--TSLVVQN   79 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHH--HHHHHHH
Confidence            34567778888999998899999999999887767666666666677777888888899999876543211  1111222


Q ss_pred             HHHHHHHHHHHHhhhcCCC---cHHHHHHHHHHHHHHhhhh---hhhhhh------hhh--ccCCcchhHHHHHHHHhhh
Q 009409          416 IAFLSPAVCMTLSSIDLGL---PHWEIVGILTAGLALSSFA---LSGLYC------THQ--DISPEYASILLGITNTVGA  481 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~---~~~~~~------~~~--~~~~~~~g~~~g~~~~~~~  481 (535)
                      ....+.+..+.........   ..+....++......+...   ......      +..  .-+++.....++.+.-+-.
T Consensus        80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL  159 (432)
T PF06963_consen   80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL  159 (432)
T ss_pred             HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence            2233333333322222211   0122222222211222111   111111      111  1245666777777777888


Q ss_pred             hhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          482 VPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       482 lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      +...++|.+.|.+.+..+ ......+.++.-++...+-++.
T Consensus       160 ~ckllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  160 FCKLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999774 6555555555555555554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.90  E-value=0.084  Score=44.68  Aligned_cols=109  Identities=9%  Similarity=-0.083  Sum_probs=77.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhh
Q 009409          377 VSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSG  456 (535)
Q Consensus       377 ~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  456 (535)
                      -.++.+....+..++.+.+.+++|.|         +.+.++.+.-.+......  ..+.+..+.+..+.|++.+..+...
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~--~~~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFF--YPNSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhHHhhHhh
Confidence            34555666777778888899999864         444444443333222222  2345566677778899988888888


Q ss_pred             hhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhc
Q 009409          457 LYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLD  496 (535)
Q Consensus       457 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  496 (535)
                      ..++.+...++.+++..|+...+...+.++|..+.-.+..
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888999999999999999888888877655544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.00074  Score=60.41  Aligned_cols=154  Identities=11%  Similarity=0.150  Sum_probs=82.7

Q ss_pred             CcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 009409          327 VPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET  406 (535)
Q Consensus       327 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~  406 (535)
                      .+|..-+++-.++...+.+.+.-.....-..++|.|..+.+++.....+++-++.++.....+.+..-+-  +++++   
T Consensus       192 m~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eip--wngkr---  266 (412)
T KOG4830|consen  192 MHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIP--WNGKR---  266 (412)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCC--cCcce---
Confidence            3455666777777888888888877777888999988887788777777777777776665544432111  01110   


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhc--cCCcchhHHHHHHHHhhhhh
Q 009409          407 TMVRKICQTIAFLSPAVCMT-LSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQD--ISPEYASILLGITNTVGAVP  483 (535)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~lg  483 (535)
                         .|.....+.++...+.. +.....+........-+++|++.+.............  ...+..+...|.+++.--+.
T Consensus       267 ---lKayYsaGgiiwifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS  343 (412)
T KOG4830|consen  267 ---LKAYYSAGGIIWIFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLS  343 (412)
T ss_pred             ---eeeeeecccHHHHHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhc
Confidence               11111222222222222 2222233333444444556666555444433333322  23345566667777666665


Q ss_pred             hhHHH
Q 009409          484 GIVGV  488 (535)
Q Consensus       484 ~~igp  488 (535)
                      ..++-
T Consensus       344 ~GiA~  348 (412)
T KOG4830|consen  344 NGIAY  348 (412)
T ss_pred             ccHHH
Confidence            55443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.63  E-value=0.023  Score=57.26  Aligned_cols=108  Identities=17%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHhhhccchhhhcccCCc--hhhHHHHH--HHHHHHHHHHhhh---------hhhhHHHHHHHHhhhccC
Q 009409          152 GLVQSSFFWGYALSQLPGGWLAKIFGGR--KVLQTGVL--IWSLATALLPLLA---------GFMPGLVLSRVLVGIGEG  218 (535)
Q Consensus       152 ~~~~s~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~--~~~~~~~~~~~~~---------~~~~~l~~~~~~~G~~~~  218 (535)
                      -....++.++-.+|..+..+.. .-++|  ++++.+.+  ++.-.. +++...         ++-+..++..++.|+..|
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf-~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLF-LLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHH-HHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            4566788888888887654431 11222  33332221  221222 222111         233567778999999999


Q ss_pred             CchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHH
Q 009409          219 VSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPP  261 (535)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  261 (535)
                      -.......+..+..+++||..+-.+...+..+|..+|..++-.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888888888877543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.61  E-value=0.15  Score=48.34  Aligned_cols=150  Identities=16%  Similarity=0.115  Sum_probs=88.7

Q ss_pred             hhhHHHHHhhHHHHHHHhCCCh--hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009409          350 WGHYTCLSWLPTYFSEELSLNL--TEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (535)
Q Consensus       350 ~~~~~~~~~~p~~l~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (535)
                      ..........+.+..+ ++.+.  ...++......+...++.++.|++.||.|+|       +..  ............+
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~--~~~~~~~~~~~~~   85 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR-------KVL--IIGLLLFLLGTLL   85 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch-------HHH--HHHHHHHHHHHHH
Confidence            3334444566666653 34444  4678888888888888889999999998654       111  2222111111111


Q ss_pred             hhhcCC-CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCC-cchhHHHHHHHH-hhhhhhhHHHHHHHHHhcc-cCcchH
Q 009409          428 SSIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISP-EYASILLGITNT-VGAVPGIVGVALTGYLLDS-THSWSM  503 (535)
Q Consensus       428 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~lg~~igp~i~G~l~~~-~g~~~~  503 (535)
                      ...... .....++..+..|++.+...+.......+..++ +.++...+.... ...+|..++|.+++.+... ...|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T COG0477          86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA  165 (338)
T ss_pred             HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            111111 233333444445666665666666666666665 578888888888 5788889999888877765 113555


Q ss_pred             HHHHHH
Q 009409          504 SLFAPS  509 (535)
Q Consensus       504 ~~~~~~  509 (535)
                      .+....
T Consensus       166 ~~~~~~  171 (338)
T COG0477         166 AFLLAA  171 (338)
T ss_pred             HHHHHH
Confidence            444433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.30  E-value=0.038  Score=54.94  Aligned_cols=86  Identities=8%  Similarity=0.060  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhccCCc---chhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHH
Q 009409          436 HWEIVGILTAGLALSSFALSGLYCTHQDISPE---YASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFF  512 (535)
Q Consensus       436 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~  512 (535)
                      ...++++.+++++.+.+=+.......+.++++   ++.+.+..+....++|..+++.+.+++-+.. +|...|.+.++..
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~  112 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGM  112 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-chhhhhhHHHHHH
Confidence            45677788889999988888888888877654   5777888899999999999999999999988 4999999888766


Q ss_pred             HHHHHhhhhh
Q 009409          513 YLTGTIVWLA  522 (535)
Q Consensus       513 ~~~~~~~~~~  522 (535)
                      +++.+..+.-
T Consensus       113 ~~~~~~f~~~  122 (372)
T PF00854_consen  113 LLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhC
Confidence            6555544443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.065  Score=53.71  Aligned_cols=145  Identities=17%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhh-h--hcccCCCccch-hHHHHHHHHHHHhhhccchhhhc---ccCCchhhHHHHHHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIP-M--SHRFGWNSSVA-GLVQSSFFWGYALSQLPGGWLAK---IFGGRKVLQTGVLIW  189 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~g~s~~~~-~~~~s~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~  189 (535)
                      +++...++..++..+.+....|. +  ....+.+.... ++..-...++..++.++.+.+.+   ++|+++++.++..+.
T Consensus       243 l~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~  322 (461)
T KOG3098|consen  243 LLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIH  322 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHH
Confidence            34445555566666666666665 2  22333332222 22222333444455566666665   488999999988887


Q ss_pred             HHHHHHHHhhhh-----------------hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHH
Q 009409          190 SLATALLPLLAG-----------------FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS  252 (535)
Q Consensus       190 ~~~~~~~~~~~~-----------------~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  252 (535)
                      .++.++.....+                 ++...+++-++.|++.+........++.+.+| ++|..+.++...-..++.
T Consensus       323 ~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s  401 (461)
T KOG3098|consen  323 LIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVAS  401 (461)
T ss_pred             HHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH
Confidence            777665532211                 24467888899999999999999999999994 888999999888888887


Q ss_pred             HHHhhhHHHh
Q 009409          253 VAGLLLAPPI  262 (535)
Q Consensus       253 ~~g~~~~~~l  262 (535)
                      .++-......
T Consensus       402 ~v~~f~~~~~  411 (461)
T KOG3098|consen  402 CVAFFFSPYL  411 (461)
T ss_pred             HHHhhhhhhh
Confidence            7766555433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.22  E-value=0.015  Score=61.01  Aligned_cols=164  Identities=10%  Similarity=0.163  Sum_probs=112.4

Q ss_pred             HHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc--
Q 009409          354 TCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID--  431 (535)
Q Consensus       354 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  431 (535)
                      +.....-+-++++++++..+.|++....-++..+......+...|..+.++         +..+.+++++..++..+.  
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~---------Ig~G~~~m~lgsll~alPHf  184 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRW---------IGIGLVLMGLGSLLFALPHF  184 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccce---------eeechhHHHHHHHHHhChHH
Confidence            444444455677899999999999999999999888888888777543221         122222222221111110  


Q ss_pred             ------------------C---------------------------C-C-cH--HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 009409          432 ------------------L---------------------------G-L-PH--WEIVGILTAGLALSSFALSGLYCTHQ  462 (535)
Q Consensus       432 ------------------~---------------------------~-~-~~--~~~~~~~~~g~~~~~~~~~~~~~~~~  462 (535)
                                        .                           . + ..  +++++.++.|++...+.+....++-+
T Consensus       185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD  264 (735)
T KOG3626|consen  185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD  264 (735)
T ss_pred             hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence                              0                           0 0 02  33445677888888888888888988


Q ss_pred             ccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc------------------CcchHHHHHHHHHHHHHHHhhhhhcc
Q 009409          463 DISPEYASILLGITNTVGAVPGIVGVALTGYLLDST------------------HSWSMSLFAPSIFFYLTGTIVWLAFA  524 (535)
Q Consensus       463 ~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~~  524 (535)
                      .+.+++.....|+++++.-+|-++|-++++.+...+                  |-|...|++.+.+.++.++.++++.+
T Consensus       265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            899999999999999999999999988888776532                  34677788888877777776666654


Q ss_pred             CC
Q 009409          525 SS  526 (535)
Q Consensus       525 ~~  526 (535)
                      +.
T Consensus       345 ~l  346 (735)
T KOG3626|consen  345 EL  346 (735)
T ss_pred             cC
Confidence            43

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.15  E-value=0.41  Score=48.63  Aligned_cols=37  Identities=14%  Similarity=0.021  Sum_probs=32.8

Q ss_pred             hhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          459 CTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       459 ~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      .+.+...+++..+-.++....+++|..+++.+..++.
T Consensus       153 fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       153 FANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556678899999999999999999999999998887

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.03  E-value=0.001  Score=68.92  Aligned_cols=166  Identities=14%  Similarity=0.196  Sum_probs=2.3

Q ss_pred             hhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 009409          351 GHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSI  430 (535)
Q Consensus       351 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (535)
                      ...++..-.-+-++++++++..++|++.+..-++.++..++..++.+|..+.        ++ +..+.++.++..++..+
T Consensus        17 ~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp--------rw-ig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   17 MVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP--------RW-IGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--------ce-eeecHHHHHHHHHHHhc
Confidence            3344444444456678999999999999999999999999999988875432        12 22233333332222211


Q ss_pred             cC---C----------------------------------------------CcHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 009409          431 DL---G----------------------------------------------LPHWEIVGILTAGLALSSFALSGLYCTH  461 (535)
Q Consensus       431 ~~---~----------------------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~  461 (535)
                      +.   +                                              ...+.+++.++.|++....++...+++-
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            00   0                                              0112334556677777777888888898


Q ss_pred             hccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcc---------------------cCcchHHHHHHHHHHHHHHHhhh
Q 009409          462 QDISPEYASILLGITNTVGAVPGIVGVALTGYLLDS---------------------THSWSMSLFAPSIFFYLTGTIVW  520 (535)
Q Consensus       462 ~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~---------------------~g~~~~~~~~~~~~~~~~~~~~~  520 (535)
                      +++++++.+...|++.++..+|-++|-.++|.....                     .|-|...|++.+++.++.++.++
T Consensus       168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~  247 (539)
T PF03137_consen  168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF  247 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888888877642                     13477777777777777666666


Q ss_pred             hhccC
Q 009409          521 LAFAS  525 (535)
Q Consensus       521 ~~~~~  525 (535)
                      .+.|+
T Consensus       248 ~FPk~  252 (539)
T PF03137_consen  248 FFPKK  252 (539)
T ss_dssp             -----
T ss_pred             cCCcc
Confidence            65543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.91  E-value=0.59  Score=46.23  Aligned_cols=156  Identities=12%  Similarity=-0.046  Sum_probs=96.7

Q ss_pred             HHHhhHHHHHHH-hCCChhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcC
Q 009409          355 CLSWLPTYFSEE-LSLNLTEAAWVSILPPL-ASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDL  432 (535)
Q Consensus       355 ~~~~~p~~l~~~-~g~s~~~~g~~~~~~~~-~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (535)
                      ...++..|+.+. .|++..+...-..+.+. ..++.-+....+.|.++-|         ..+++..+...+...++.+ .
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk---------pviil~~~~~i~t~~lll~-~   91 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK---------PVIILQALSYIITWLLLLF-G   91 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHH-H
Confidence            346777888776 79988887543333322 3344555677889988654         3333333333333333332 2


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc-CcchHHHHHHHHH
Q 009409          433 GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST-HSWSMSLFAPSIF  511 (535)
Q Consensus       433 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-g~~~~~~~~~~~~  511 (535)
                      .+...+-+.-++.|.+.+. -.....++...+++++.-++.+.......+|..++..++-.+.... .+|....++..+.
T Consensus        92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~  170 (412)
T PF01770_consen   92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS  170 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4445555666777777664 4555566777789999999999999999999898888887777632 3566665555444


Q ss_pred             HHHHHHhhhh
Q 009409          512 FYLTGTIVWL  521 (535)
Q Consensus       512 ~~~~~~~~~~  521 (535)
                      ..++.++.++
T Consensus       171 ~~~a~~~~~f  180 (412)
T PF01770_consen  171 VSLALLIALF  180 (412)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.70  E-value=0.11  Score=38.57  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             hhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 009409          349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLI  400 (535)
Q Consensus       349 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~  400 (535)
                      ..+-+.+...+|...+ +.++|..+.|++.+..+++..+|.+...++.++..
T Consensus         5 GigRFayTplLP~M~~-~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~   55 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQA-DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR   55 (85)
T ss_pred             hhHHHHHHhHhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3455677788998775 56999999999999999999999999998887643

Note that many members are hypothetical proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=94.17  E-value=0.073  Score=52.45  Aligned_cols=153  Identities=16%  Similarity=0.118  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQT  415 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  415 (535)
                      +.........+...+++..=..++|.|+++ .|.+....+.++....+.+.+.+++.|..+||...|.-+    ||..+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR----RRPfI~  106 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR----RRPFIL  106 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccc----ccchHH
Confidence            344444555555666666667899999974 699999999999999999999999999999986544222    223333


Q ss_pred             HHHHHHHHHHHHhhhcC-------CC--c--HHHHHHHHHHH-----HHHhhhhhhhhhhhhhccCCcchhH-HHHHHHH
Q 009409          416 IAFLSPAVCMTLSSIDL-------GL--P--HWEIVGILTAG-----LALSSFALSGLYCTHQDISPEYASI-LLGITNT  478 (535)
Q Consensus       416 ~~~~~~~~~~~~~~~~~-------~~--~--~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~  478 (535)
                      .+....++.+.+.....       ++  .  ....+..+++|     ++......+.-....+...++++.+ +++.+..
T Consensus       107 ~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~  186 (498)
T KOG0637|consen  107 AGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSF  186 (498)
T ss_pred             HhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHH
Confidence            33333333333322211       11  1  11122222333     3333344455556666666666555 8888888


Q ss_pred             hhhhhhhHHHHHHHH
Q 009409          479 VGAVPGIVGVALTGY  493 (535)
Q Consensus       479 ~~~lg~~igp~i~G~  493 (535)
                      ...+|+.+|=.++++
T Consensus       187 f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  187 FMAVGNVLGYALGSY  201 (498)
T ss_pred             HHHhcceeeeecccc
Confidence            888888887666553

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.88  E-value=0.019  Score=55.22  Aligned_cols=107  Identities=22%  Similarity=0.198  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHH--HHHHHHHHHHh----------hhhhhhHHHHHHHHhhhccCC
Q 009409          153 LVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVL--IWSLATALLPL----------LAGFMPGLVLSRVLVGIGEGV  219 (535)
Q Consensus       153 ~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~--~~~~~~~~~~~----------~~~~~~~l~~~~~~~G~~~~~  219 (535)
                      ....+|.++-.+|..+.++.--+ -.+|++...+..  ++ +..++++.          .-++-+..++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            35667888888888887764211 134444433221  11 22222221          112335677788999999999


Q ss_pred             chhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHH
Q 009409          220 SPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAP  260 (535)
Q Consensus       220 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  260 (535)
                      .......+..+..++++|..+-.+......+|-.+|..++-
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             --HHHH-----------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988888888888888888777653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.64  E-value=0.021  Score=54.95  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=3.1

Q ss_pred             CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHH
Q 009409          434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALT  491 (535)
Q Consensus       434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  491 (535)
                      +.++.++.++++|+..|........+..+.++++++..+..+++..-.+|-.+|..+.
T Consensus       247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             --------------------HHHH----------------------------------
T ss_pred             chHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566677888888877777777777888888888887777777777777766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=93.60  E-value=0.95  Score=43.80  Aligned_cols=145  Identities=11%  Similarity=-0.006  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHcCCCchhHH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFAD-----NLIATGVETTMVR  410 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d-----r~~~~~~~~~~~~  410 (535)
                      +++..++..+.+....+.... .+|..++ .-|.|-++.+......+=  .--.++...++|     |+|+||.      
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~-ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grrks------  100 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQ-AKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKS------  100 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhc-CCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccc------
Confidence            566677777777777755545 9999997 447777766654333221  122455667777     8888743      


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcC------C-CcHHHH--HHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhh
Q 009409          411 KICQTIAFLSPAVCMTLSSIDL------G-LPHWEI--VGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA  481 (535)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  481 (535)
                       ++.-.-+++...+..+.....      + .+...+  ..++++-+..+..-....-+......+++.|-+........+
T Consensus       101 -Wvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~  179 (510)
T KOG3574|consen  101 -WVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQT  179 (510)
T ss_pred             -eeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHh
Confidence             333333333333333322111      1 111111  122333333344444445556666788887777766666666


Q ss_pred             hhhhHHHHHH
Q 009409          482 VPGIVGVALT  491 (535)
Q Consensus       482 lg~~igp~i~  491 (535)
                      .|.+++..+.
T Consensus       180 ~GyfL~~~if  189 (510)
T KOG3574|consen  180 AGYFLGNVVF  189 (510)
T ss_pred             hhHHhhccee
Confidence            6666665544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.75  E-value=0.27  Score=44.88  Aligned_cols=153  Identities=12%  Similarity=0.098  Sum_probs=78.7

Q ss_pred             HHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHH
Q 009409          362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVG  441 (535)
Q Consensus       362 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (535)
                      |+-+.||+...++|.++........+.+.+.|-++||.|+|+.-      ....+..+..++.     -..+....+.++
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKrac------vtycitYiLsCiT-----KhSpqYkVLmVG  130 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRAC------VTYCITYILSCIT-----KHSPQYKVLMVG  130 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccce------eeehHHHHHHHHh-----hcCCceEEEeeh
Confidence            44567899999999887777677778888899999999987421      1111222211111     111222334555


Q ss_pred             HHHHHHHHhhhhhhhhhhhh-hcc-----CCcchhHHHHHHH-HhhhhhhhHHHHHHHHHhcccC-cchHHHHHHHHHHH
Q 009409          442 ILTAGLALSSFALSGLYCTH-QDI-----SPEYASILLGITN-TVGAVPGIVGVALTGYLLDSTH-SWSMSLFAPSIFFY  513 (535)
Q Consensus       442 ~~~~g~~~~~~~~~~~~~~~-~~~-----~~~~~g~~~g~~~-~~~~lg~~igp~i~G~l~~~~g-~~~~~~~~~~~~~~  513 (535)
                      -.+.|+.........-.+.. ++.     +.+-.....+-.. ....+-+++....+-.+.|.++ +.-.+|-..++++.
T Consensus       131 R~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLa  210 (454)
T KOG4332|consen  131 RVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLA  210 (454)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence            66666665554444433332 222     2222222233222 2234445556666666777653 13345555444444


Q ss_pred             HHHHhhhhhccC
Q 009409          514 LTGTIVWLAFAS  525 (535)
Q Consensus       514 ~~~~~~~~~~~~  525 (535)
                      ++..+.+--+.+
T Consensus       211 igmAvil~~W~E  222 (454)
T KOG4332|consen  211 IGMAVILSSWSE  222 (454)
T ss_pred             HHHHHHHhhhhh
Confidence            444444433333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.57  E-value=3.8  Score=42.94  Aligned_cols=173  Identities=14%  Similarity=0.075  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      ..+..-.+...+++++..-+-.|+.+.++.+...+.-..............++++++|-+-.|        -..+.++.+
T Consensus        41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gr--------y~tI~~~s~  112 (571)
T KOG1237|consen   41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGR--------YFTINIGSL  112 (571)
T ss_pred             HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH--------HHHHHHHHH
Confidence            344445556666677777788888888898887777666666666777778889999988654        222222222


Q ss_pred             HHHHHHHHh-----hh--cC------------CCcH-----HHHHHHHHHHHHHhhhhhhhhhhhhhccC---C-cc--h
Q 009409          420 SPAVCMTLS-----SI--DL------------GLPH-----WEIVGILTAGLALSSFALSGLYCTHQDIS---P-EY--A  469 (535)
Q Consensus       420 ~~~~~~~~~-----~~--~~------------~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~-~~--~  469 (535)
                      +..+++.+.     ..  ..            ..+.     .+..++.+..++.++.-+.....-++.++   + +.  .
T Consensus       113 i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~  192 (571)
T KOG1237|consen  113 ISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGI  192 (571)
T ss_pred             HHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCc
Confidence            222211110     00  00            0001     12223333444455555555555555555   2 22  3


Q ss_pred             hHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhh
Q 009409          470 SILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWL  521 (535)
Q Consensus       470 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  521 (535)
                      ..-+.......++|..++-.+.-++-+.. +|...|.+..++.+++.++.+.
T Consensus       193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  193 PSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHc
Confidence            36777788888899998888888887765 5888888877765555444443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.44  E-value=0.5  Score=45.42  Aligned_cols=165  Identities=12%  Similarity=-0.002  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhhhcccCC-CccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHH------H
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGW-NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI------W  189 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~------~  189 (535)
                      +.+.+++++...+.-++......++.+++- |..........-.....+..++.|-..|+..|+|++...+.+      .
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v  109 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV  109 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence            356677888887777788777777777663 233333333333444556677888889999999988766542      2


Q ss_pred             HHHHHHHHhhhh-----hhhHHHHHHHHhhhccCCc--hhhHHH--Hhhhcc----cccchhhH---HHHHHHhhhhHHH
Q 009409          190 SLATALLPLLAG-----FMPGLVLSRVLVGIGEGVS--PSAATD--LIARSI----PLEERSRA---VSFVFGGLSFGSV  253 (535)
Q Consensus       190 ~~~~~~~~~~~~-----~~~~l~~~~~~~G~~~~~~--~~~~~~--~~~~~~----~~~~r~~~---~~~~~~~~~~g~~  253 (535)
                      +.+.++..+..+     +++.+..+..+.-...+..  ...+.+  +--||.    ..+.+...   .+.....-.....
T Consensus       110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~  189 (503)
T KOG2601|consen  110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL  189 (503)
T ss_pred             HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence            222223323333     3344444433332221111  111111  112333    22333333   3666667777889


Q ss_pred             HHhhhHHHhccccchhHHHHHHHHHHHH
Q 009409          254 AGLLLAPPIIENLGWESVFYIFGLLGIA  281 (535)
Q Consensus       254 ~g~~~~~~l~~~~gw~~~f~~~~~~~~~  281 (535)
                      +.|++.|.+.+..+-|..-.+.++..++
T Consensus       190 Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  190 LAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             hhhhhhcccceeechhhhhhhhHHHHHH
Confidence            9999999999888888766665555444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.66  E-value=14  Score=36.53  Aligned_cols=65  Identities=6%  Similarity=-0.096  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (535)
                      -.++...+........+..+.+..+.|-...-+.+.  +-.......+.+.+...+...+.-+...|
T Consensus        18 ~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~   82 (406)
T KOG1479|consen   18 LVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR   82 (406)
T ss_pred             cHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555566666777777777776655444444  33344444555555555555555555443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=89.47  E-value=4.5  Score=37.20  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHhhhccchhhhcc-cCCchhhHH----HHHHHHHHHHHHHhhh-h---hhhHHHHHHHHhhhccCCchh
Q 009409          152 GLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQT----GVLIWSLATALLPLLA-G---FMPGLVLSRVLVGIGEGVSPS  222 (535)
Q Consensus       152 ~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~----~~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~G~~~~~~~~  222 (535)
                      ....-++..+..+|....|+.... +.||+.+..    +.+++.+..++..... +   ....+++.-|+.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            344456666777888888888875 455554442    2333333332221111 1   245577777888877644444


Q ss_pred             hHHHHhhhc--ccccchhhHHHHHHHhhhhHHHHHhhh
Q 009409          223 AATDLIARS--IPLEERSRAVSFVFGGLSFGSVAGLLL  258 (535)
Q Consensus       223 ~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~  258 (535)
                      +...+-.|.  .+|++-|...|+....+.+...+.-++
T Consensus       224 ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii  261 (267)
T PF07672_consen  224 VILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDII  261 (267)
T ss_pred             HHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHH
Confidence            433322222  234445555555444444444443333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=89.31  E-value=0.86  Score=45.82  Aligned_cols=67  Identities=10%  Similarity=-0.007  Sum_probs=50.6

Q ss_pred             hHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhH
Q 009409          204 PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES  270 (535)
Q Consensus       204 ~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~  270 (535)
                      ..+++.-++..+.....+.+..+.-+.+.+|.-=|+.|.+.+...++|+---..+.-++.+.+.++.
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~  472 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT  472 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence            3455556666677677778888888888999999999999999999988766666666666655553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.40  E-value=2.3  Score=39.98  Aligned_cols=135  Identities=19%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             HHHHHhhhhhhHhhhhh-h----hcccCCC-ccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHH-----HHHHHH
Q 009409          123 FVICNMDKVNLSVAIIP-M----SHRFGWN-SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG-----VLIWSL  191 (535)
Q Consensus       123 ~~~~~~~~~~~~~~~~~-~----~~~~g~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-----~~~~~~  191 (535)
                      .+..++..+.++..+.. +    .+.+..+ ..|.-|....|.+|-.+..    .-..-+--+.+...+     .+++.+
T Consensus       256 L~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSR----SS~~~~~~p~l~~LailQ~vNl~ff~  331 (409)
T KOG3880|consen  256 LALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISR----SSINLFTMPYLWLLAILQFVNLLFFL  331 (409)
T ss_pred             HHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEe----ccceEEechHHHHHHHHHHHHHHHHH
Confidence            34444444444443222 1    2334444 3457777777776533221    111112222222222     223333


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHh
Q 009409          192 ATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPI  262 (535)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  262 (535)
                      ..... .+.++++..++..+.-|+-+|..+....--+.+-.++++|-.+|+....+-++|..++.+++-.+
T Consensus       332 ~~a~~-~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  332 LQAWY-WFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHH-HhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            33333 35677788888899999999988888888888878889999999999999999988887776444

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=84.12  E-value=61  Score=34.27  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=21.7

Q ss_pred             CCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 009409          368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA  401 (535)
Q Consensus       368 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~  401 (535)
                      .-++...++++..++++..+--++.+....|+.+
T Consensus       321 tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lp  354 (571)
T PRK00293        321 SGDLLLGGLTLYLLALGMGLPLILITTFGNKLLP  354 (571)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3455666677777888776666666666655543

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=83.27  E-value=26  Score=34.23  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATG  403 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~  403 (535)
                      +....+..++++..++--...+-...|+.+-.|-+....+..-..-+....+...+.|...|+..+.|
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~K   94 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVK   94 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHH
Confidence            33445566777777777777777788887655545544444444455556666777788888887654

>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.52  E-value=8.2  Score=38.14  Aligned_cols=41  Identities=15%  Similarity=0.139  Sum_probs=23.5

Q ss_pred             hhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCc
Q 009409          137 IIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGR  179 (535)
Q Consensus       137 ~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r  179 (535)
                      ...+-+.+|++...+|+-  +...|..+--++...+..|-|--
T Consensus       447 a~~iGeT~gIp~eIMGLT--iLAAGTSIPDlitSvIVARKGlG  487 (588)
T KOG1307|consen  447 ANIIGETLGIPDEIMGLT--ILAAGTSIPDLITSVIVARKGLG  487 (588)
T ss_pred             HHHcccccCCCHHHhhhh--hhhcCCchHHhhHhhhhcccccc
Confidence            444666777777766643  33334445555666666665543

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=80.27  E-value=39  Score=30.23  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=25.6

Q ss_pred             cchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHHH
Q 009409          235 EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGL  277 (535)
Q Consensus       235 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~  277 (535)
                      +++.+.-........++..+|..+++.+.+..+.. ..++.++
T Consensus       158 ~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~-al~~~~~  199 (209)
T PF06912_consen  158 KDRALRRALRYLLIILSFFIGAILGALLYRRLGFW-ALLLPAL  199 (209)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence            33334455566666677777777777777777754 3444333

The function of this family is unknown although a few members are thought to be membrane proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-55
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	2e-11
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	4e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-04
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	5e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  192 bits (489), Expect = 2e-55
 Identities = 66/418 (15%), Positives = 139/418 (33%), Gaps = 19/418 (4%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 26  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 84

Query: 172 LAKIFGGRKVLQTGVLIWSLATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +     +  +      +  + +   L G  +G+        +
Sbjct: 85  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL-GWESVFYIFGLLGIAW-FSGF 286
                 +ER   VS      + G     LL    +     W +  Y+     I      F
Sbjct: 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204

Query: 287 KILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHF 346
            ++++   S G                  + +E+  + K +  + +  +K +W +  A+ 
Sbjct: 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL--TAKQIFMQYVLPNKLLWYIAIANV 262

Query: 347 CGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVET 406
                 Y  L W PTY  E     L +++W   L   A +  T +    +D +       
Sbjct: 263 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322

Query: 407 TMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTH-QDIS 465
           T V  +            +       G P  +++ ++  G  +  +    L   H  +++
Sbjct: 323 TGVFFMTLVTIAT-----IVYWMNPAGNPTVDMICMIVIGFLI--YGPVMLIGLHALELA 375

Query: 466 P-EYASILLGITNTVGAVPG-IVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWL 521
           P + A    G T   G + G +   A+ GY +D    W            L   ++ +
Sbjct: 376 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV 432

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 64/423 (15%), Positives = 134/423 (31%), Gaps = 55/423 (13%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
             + +      F   +  AGL+QS+F++GY +  +P G L K    +  + TG+ +++L 
Sbjct: 45  NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104

Query: 193 TALLPLLAGFM---PGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLS 249
            A L   A  +      ++   ++  G G   +AA   +    P       ++      S
Sbjct: 105 -AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163

Query: 250 FGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSN--------GATLA 301
           FG++  ++    +I +        +   +     S +K                    +A
Sbjct: 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223

Query: 302 PRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPT 361
                       S +  +  +         + R +     + A FC       C S+L  
Sbjct: 224 LLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283

Query: 362 YFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSP 421
           Y  EE+       A   +   +    +      +            ++ +        + 
Sbjct: 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW------------LISRFAPHKVLAAY 331

Query: 422 AVCMTLSSIDLGLPHWEIVGILTAG-LALSSFALSGLYCTHQDISPEYASIL-LGI---- 475
           A+               ++     G + L +  L   +      S +Y +I  LGI    
Sbjct: 332 ALIAMALC---------LISAFAGGHVGLIALTLCSAFM-----SIQYPTIFSLGIKNLG 377

Query: 476 --TNTVGA--VPGIVGVA----LTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK 527
             T    +  V  I+G      + G++ D+  +   +   P++ F +   I   A   S+
Sbjct: 378 QDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV---IFIFARFRSQ 434

Query: 528 PQN 530
              
Sbjct: 435 TAT 437

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 55/376 (14%), Positives = 115/376 (30%), Gaps = 52/376 (13%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199
           M+            V  ++   Y +SQL  G ++   G R V+  G+ I+ LAT +  + 
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VT 84

Query: 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSI-----PLEERSRAVSFVFGGLSFGSVA 254
              +  L+ +  + G+G     +    ++AR++        +   A S +  G+    + 
Sbjct: 85  TSSLTVLIAASAMQGMG-----TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL 139

Query: 255 GLLLAPPIIENLGWESVFYIFGLLGIA-WFSGFKILQEGETSNGATLAPRSNYINMKKSL 313
             L+   +     W + +    +L     FS  + + E       T    +    +  S 
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE-------TRPVDAPRTRLLTS- 191

Query: 314 SASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTE 373
                          +K +F +      +     G  G     +         L L+   
Sbjct: 192 ---------------YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT 236

Query: 374 AAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSIDLG 433
            + + ILP  A+      A +            + +         L+  + M +      
Sbjct: 237 VSILFILPIPAAFFGAWFAGRPNKRF-------STLMWQSVICCLLA-GLLMWIPDWFGV 288

Query: 434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY---ASILLG-ITNTVGAVPGIVGVA 489
           +  W ++         +            +  P     A  L+G + N    V      +
Sbjct: 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLA----S 344

Query: 490 LTGYLLDSTHSWSMSL 505
           L+  L  +    S+ L
Sbjct: 345 LSAMLPQTG-QGSLGL 359

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 2/113 (1%)

Query: 170 GWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIA 229
             +    GG+  L     I S+              +V+ + L               I 
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-LEVVILKTLHMFEVPFLLVGCFKYIT 338

Query: 230 RSIPLEERSRAVSFVFG-GLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIA 281
               +   +      F        +   +LA  + E++G++  + + GL+ + 
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 46/405 (11%), Positives = 107/405 (26%), Gaps = 35/405 (8%)

Query: 140 MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL--- 196
           +      + S  G++ ++      L Q   G L+   G RK L   +    +  A     
Sbjct: 34  LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93

Query: 197 ----PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGS 252
                L    + G ++  + +G        A    I +           + +FG    G 
Sbjct: 94  IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG--CVGW 151

Query: 253 VAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKS 312
             G  +   +         +   G   I     F    +                    +
Sbjct: 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD---------------APSSAT 196

Query: 313 LSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLT 372
           ++ ++     +        +FR   +W +       S  +         +F+   +    
Sbjct: 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256

Query: 373 EAAWVSILPPLASVLVTSIAAQFADNLIA-TGVETTMVRKICQTIAFLSPAVCMTLSSID 431
                  +  +  +L  SI   FA  +I   G +  ++      +A    +V +  SS  
Sbjct: 257 GTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALL------LAGTIMSVRIIGSSFA 309

Query: 432 LGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGA-VPGIVGVAL 490
                  ++        +    +             +++ +  +       +  I    L
Sbjct: 310 TSAL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368

Query: 491 TGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTRD 535
            G + +S   +  +     +       I     +   P +   R 
Sbjct: 369 AGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 144 FGWNSSVAGLVQSSFFWGYALSQLPGGWLA-KIFGGRKVLQTGVLIWSLATALLPLLAGF 202
                + A  + + +     LS   GG++A +I G R  +  G ++  L   +L L  G 
Sbjct: 49  LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG- 107

Query: 203 MPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSR--AVSFVFGGLSFGSVAGLLLAP 260
              L  S +L+ IG G      + L+       +R R    S    G++ G+    L+  
Sbjct: 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167

Query: 261 PIIENLGWESVFYIFGLLGIAWFSGFKILQ 290
              E  G+   F +  +        +    
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGG 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.59
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.48
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
2xut_A	524	Proton/peptide symporter family protein; transport	99.38
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.25
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.22

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.3e-39  Score=329.87  Aligned_cols=399  Identities=14%  Similarity=0.180  Sum_probs=311.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.+++.++++++|+++||+|||++++++.+++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            456777888888889999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh----hhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccc
Q 009409          192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG  267 (535)
Q Consensus       192 ~~~~~~~~----~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  267 (535)
                      +.++.+ +    +++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|++++++.+..|
T Consensus       105 ~~~~~~-~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  183 (451)
T 1pw4_A          105 VMLFMG-FVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  183 (451)
T ss_dssp             HHHHHH-HCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHHHH-hhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            988775 5    77889999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             -hhHHHHHHHHHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH
Q 009409          268 -WESVFYIFGLLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (535)
Q Consensus       268 -w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (535)
                       ||+.|++.+++.++..+ ..+.++++++.......++.+... ++. ....++.+...++..+++.+++|.++...+..
T Consensus       184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (451)
T 1pw4_A          184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY-PDD-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  261 (451)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccc-ccc-chhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence             99999999988766544 445555544332211111100000 000 00000001111111246788999999999999


Q ss_pred             HHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHH--HHcCCCchhHHHHHHHHHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATGVETTMVRKICQTIAFLSPAV  423 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~  423 (535)
                      ++.....+.+..++|.|+++.+|++..+.+.+.+...++.+++.++.+++.||+  ++|        +.......+...+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~  333 (451)
T 1pw4_A          262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHH
Confidence            999999999999999999887899999999999999999999999999999998  643        2222222222223


Q ss_pred             HHHHhhhcCC-CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh-hhhHHHHHHHHHhcccCcc
Q 009409          424 CMTLSSIDLG-LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV-PGIVGVALTGYLLDSTHSW  501 (535)
Q Consensus       424 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~igp~i~G~l~~~~g~~  501 (535)
                      .+.+...... +.....+..++.|++.+...+.......+..|+++++++.|+.+.+.++ |..++|.+.|.+.+..| +
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~  412 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W  412 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-S
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence            4443333322 3344455556667766666666667777888999999999999999999 99999999999999985 8


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhc
Q 009409          502 SMSLFAPSIFFYLTGTIVWLAF  523 (535)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~  523 (535)
                      ...|++.+++.+++.++.+...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          413 DGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777766666555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=4.8e-37  Score=311.63  Aligned_cols=372  Identities=13%  Similarity=0.150  Sum_probs=296.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +++.+..+++.++..+++.....+..|.+.+++|++..+.|++.+++.+++.++.+++|+++||+|||++++++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            34666677778888888989999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH--hhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhc-cccc-
Q 009409          192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG-  267 (535)
Q Consensus       192 ~~~~~~--~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g-  267 (535)
                      +.++..  ..+++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|++++.+. +..+ 
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  183 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH  183 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            887762  256778999999999999999999999999999999999999999999999999999999999998 5554 


Q ss_pred             ------------------------hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccC
Q 009409          268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES  323 (535)
Q Consensus       268 ------------------------w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (535)
                                              ||+.|++.+++.++..+..++.+.++.++..+.++++.                  
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------  245 (438)
T 3o7q_A          184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------------------  245 (438)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------------------
T ss_pred             ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------------------
Confidence                                    99999988877766555544443332222111111000                  


Q ss_pred             CCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHH-HHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Q 009409          324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT  402 (535)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~-l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  402 (535)
                      ..+.++++++++|.++...+..++.....+.+..++|.| +++.+|++..+++.+.....++.++++++.+++.||+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  325 (438)
T 3o7q_A          246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_dssp             SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            001235788899999999999999998889999999999 8888899999999999999999999999999999999754


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhh
Q 009409          403 GVETTMVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAV  482 (535)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  482 (535)
                               .....+.+...+.+.+....  ...+..+.+++.+++.+...+.......+.++++ ++++.++.. ...+
T Consensus       326 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  392 (438)
T 3o7q_A          326 ---------KVLAAYALIAMALCLISAFA--GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTII  392 (438)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTH
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHH
Confidence                     23333344444444333332  2233444556677777766666666666767655 888888877 6779


Q ss_pred             hhhHHHHHHHHHhcccCcchHHHHHHHHHHHH
Q 009409          483 PGIVGVALTGYLLDSTHSWSMSLFAPSIFFYL  514 (535)
Q Consensus       483 g~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~  514 (535)
                      |+.++|.+.|++.|..|++...|.+.+++.++
T Consensus       393 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          393 GGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999999999987688888876554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=3.7e-35  Score=291.41  Aligned_cols=358  Identities=15%  Similarity=0.118  Sum_probs=287.6

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      ..+++..+...++...+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            45667777888899999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             HhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHHHHHHH
Q 009409          197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG  276 (535)
Q Consensus       197 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~  276 (535)
                      . .+++++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++++.+..|||+.|++.+
T Consensus        83 ~-~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  161 (375)
T 2gfp_A           83 V-TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL  161 (375)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             H-HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence            5 667889999999999999999999999999999999999999999999999999999999999999899999999988


Q ss_pred             HHHHHHHH-HhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHH
Q 009409          277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC  355 (535)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  355 (535)
                      ++.++..+ ....+||++++++++                       +....++++.+|+|.++...+..++.....+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF  218 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            88776655 444455443321111                       001223467889999999999999999999999


Q ss_pred             HHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HHHHHHHHHhhh-cCC
Q 009409          356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAF-LSPAVCMTLSSI-DLG  433 (535)
Q Consensus       356 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~  433 (535)
                      ..+.|.|+++.+|.++.+.+.+.....++.+++.++.+++.||++++         ....... ............ ...
T Consensus       219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
T 2gfp_A          219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVM  289 (375)
T ss_dssp             HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999999988899999999999999999999999999999998641         1111111 111111101111 011


Q ss_pred             CcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHH
Q 009409          434 LPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPS  509 (535)
Q Consensus       434 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~  509 (535)
                      +.+..++..++.+++.+...+.......+..| ++++++.|+.+...++|..++|.+.|.+.+.. ++...+...+
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~  363 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHHHHH
Confidence            22333455566777777767777777777666 89999999999999999999999999998865 5776666543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=1.2e-32  Score=283.63  Aligned_cols=403  Identities=14%  Similarity=0.080  Sum_probs=275.9

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcc-----cCCCccchhHHHHHHHHHHHhhhccchhhhcc-cCCchhhHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWS  190 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~  190 (535)
                      .+++..+...++.....+.++. +.++     +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~   96 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM   96 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            4444555555555555444444 4444     99999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccc--hhhHHHHHHHhhhhHHHHHhhhHHHhccccch
Q 009409          191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW  268 (535)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw  268 (535)
                      ++.++.+ .+++++.++++|++.|++.+...+...++++|++|+++  |+.++++++.+.++|.+++|.+++++.+..||
T Consensus        97 ~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  175 (491)
T 4aps_A           97 LGHIVLA-LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY  175 (491)
T ss_dssp             HHHHHHH-SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHH-HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            9987774 67788999999999999999999999999999999988  77888989999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhccc-CCCCCCCCCCcchhhhhhhhhhhh------------------------h-HH----
Q 009409          269 ESVFYIFGLLGIAWFSGFKILQE-GETSNGATLAPRSNYINMKKSLSA------------------------S-LE----  318 (535)
Q Consensus       269 ~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~-~~----  318 (535)
                      |+.|++.++..++..+...+..+ ..+++.....+.......++..+.                        . ..    
T Consensus       176 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (491)
T 4aps_A          176 HVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI  255 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhH
Confidence            99999988776655544443322 221111111111000000000000                        0 00    


Q ss_pred             ----------HhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHH
Q 009409          319 ----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV  388 (535)
Q Consensus       319 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~  388 (535)
                                ....+..........+....+.+.+..++....+.....++|.|.++.++.+....+.+.....++.+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (491)
T 4aps_A          256 VAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLY  335 (491)
T ss_dssp             HHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHH
Confidence                      0000000000011112223444444555555555666778899998878888778888889999999999


Q ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc--------CCCcHHHHHHHHHHHHHHhhhhhhhhhhh
Q 009409          389 TSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID--------LGLPHWEIVGILTAGLALSSFALSGLYCT  460 (535)
Q Consensus       389 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  460 (535)
                      ..+.+++.||+++|+...    ...+..+....++++.+....        ..+..+..+..++.+++.+...+......
T Consensus       336 ~~~~~~l~~r~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  411 (491)
T 4aps_A          336 TPFFAWLWTAWKKNQPSS----PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVT  411 (491)
T ss_dssp             HHHHHHHHHHTTTC---C----HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999998764321    112223333333333322221        12445556666777777777777777788


Q ss_pred             hhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhhccCCC
Q 009409          461 HQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK  527 (535)
Q Consensus       461 ~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (535)
                      .+..|++.|+++.|+.+....+|..++|.+.|.+.+.  ++...|...+++.++..++.+...++.+
T Consensus       412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999988875  3566777777666666666655554433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=2.8e-31  Score=273.37  Aligned_cols=406  Identities=17%  Similarity=0.175  Sum_probs=277.9

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhhhcccCC--------CccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHH
Q 009409          117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI  188 (535)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~  188 (535)
                      +..++..++.++|...++..+|.+.++++.        +..+.|++.+++.++..+|++++|+++||+|||++++++.++
T Consensus        15 ~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l   94 (491)
T 4gc0_A           15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344566778888999999999988887743        335678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-----------------hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhH
Q 009409          189 WSLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFG  251 (535)
Q Consensus       189 ~~~~~~~~~~-----------------~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  251 (535)
                      +.++.++.++                 .+++++.++++|+++|++.|...+....+++|+.|+++|++..++...+..+|
T Consensus        95 ~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A           95 FFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            9999987753                 47788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHhccc--------cchhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhh-----hhH-
Q 009409          252 SVAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLS-----ASL-  317 (535)
Q Consensus       252 ~~~g~~~~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-  317 (535)
                      .++++.++..+...        .+||+.+.+..+..++.++..+++||.++....+.+.++.....++...     .+. 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~  254 (491)
T 4gc0_A          175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ  254 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence            99999988876543        3588888877777777777778888876543222222211111111000     000 


Q ss_pred             ---HHhccCCCCCcHHHhhhcHHHHHHH-HHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHH
Q 009409          318 ---EEMGESLKDVPWKAIFRSKAVWAMI-YAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAA  393 (535)
Q Consensus       318 ---~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g  393 (535)
                         +...+..+.......++.+...... ...+....+.+.+..+.|.+.+ ..+.+...........++..+++.++.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (491)
T 4gc0_A          255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAI  333 (491)
T ss_dssp             HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHH
Confidence               0000001111122333344444433 3334444455566667776664 5688888888788888899999999999


Q ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH--hhhcCCCcHH-HHHHHHHHHHHHh-hhhhhhhhhhhhccCCcch
Q 009409          394 QFADNLIATGVETTMVRKICQTIAFLSPAVCMTL--SSIDLGLPHW-EIVGILTAGLALS-SFALSGLYCTHQDISPEYA  469 (535)
Q Consensus       394 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~  469 (535)
                      ++.||+|+|         .....+.....+++..  .........+ .++..++...+++ ...+....+..+.+|.+.|
T Consensus       334 ~l~dr~Grr---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R  404 (491)
T 4gc0_A          334 MTVDKFGRK---------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  404 (491)
T ss_dssp             HHHHHHCSH---------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred             HHHHhhcCc---------chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence            999999865         2222222222222221  1111222222 2222222222222 2233344556677899999


Q ss_pred             hHHHHHHHHhhhhhhhHHHHHHHHHhccc-----CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCCC
Q 009409          470 SILLGITNTVGAVPGIVGVALTGYLLDST-----HSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFS  532 (535)
Q Consensus       470 g~~~g~~~~~~~lg~~igp~i~G~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (535)
                      +++.|+.+.++.+++.+++.+.+.+.+..     ......|++.+++.++..+.++++.+++|.++.|
T Consensus       405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe  472 (491)
T 4gc0_A          405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  472 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence            99999999999999999998887765431     0244567777777778888888888887776543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=1.3e-30  Score=262.19  Aligned_cols=385  Identities=11%  Similarity=0.012  Sum_probs=252.4

Q ss_pred             HHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHH
Q 009409          118 TTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL  196 (535)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  196 (535)
                      .+.+.++...+....+.+.+|. +.+++|+|..+.|++.+++.+++.++++++|+++||+|||++++++..+++++....
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~   90 (417)
T 2cfq_A           11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF   90 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            3444455555566666777777 556699999999999999999999999999999999999999998887765432111


Q ss_pred             H--hhhhhh-hHHHHHHHHhhhccCCchhhHHHHhhhcccc--cchhhHHHHHHHhhhhHHHHHhhhHHHhccccchhHH
Q 009409          197 P--LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESV  271 (535)
Q Consensus       197 ~--~~~~~~-~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  271 (535)
                      .  ...+.. ..++..+++.|++.+...+.....+.++.++  ++++..++.......+|..++|.+++++.+ .+||+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~  169 (417)
T 2cfq_A           91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFV  169 (417)
T ss_dssp             HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHH
Confidence            0  111111 1234456666666555444444444444432  456777888888999999999999999886 589999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHHHhhh
Q 009409          272 FYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWG  351 (535)
Q Consensus       272 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  351 (535)
                      |++.++..++..+..+..++++++..+. .++++.             .+++.....+++++++|.++...+..++....
T Consensus       170 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T 2cfq_A          170 FWLGSGCALILAVLLFFAKTDAPSSATV-ANAVGA-------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             HTTTTTTTTTHHHHSCSSCCCCSCSSCS-SSSSSS-------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccccccccc-cccccc-------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence            9987776544444444444332211100 000000             00000111245678899988877766666666


Q ss_pred             hHHHHHhhHHHHHHHhCC---ChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 009409          352 HYTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTLS  428 (535)
Q Consensus       352 ~~~~~~~~p~~l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (535)
                      ++....++|.|+.+.++.   +....+++..+..++.+++.++.++++||+++|         .....+.+..++.+...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHH
Confidence            666677899998765542   244557777888888899999999999999864         22333333333333333


Q ss_pred             hhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH-HHHhhhhhhhHHHHHHHHHhcccCcchHHHHH
Q 009409          429 SIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI-TNTVGAVPGIVGVALTGYLLDSTHSWSMSLFA  507 (535)
Q Consensus       429 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~igp~i~G~l~~~~g~~~~~~~~  507 (535)
                      .. .++....++..++.+++..........+..+..|++.||++.|+ ++....+|+.++|.++|++.+..| +...|.+
T Consensus       307 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~  384 (417)
T 2cfq_A          307 SF-ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLV  384 (417)
T ss_dssp             TT-CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHH
T ss_pred             HH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHH
Confidence            32 22333333333444544444444445567777899999999999 488889999999999999999774 7888888


Q ss_pred             HHHHHHHHHHhhhhhccCCCC
Q 009409          508 PSIFFYLTGTIVWLAFASSKP  528 (535)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~  528 (535)
                      .+++.+++.++.+...+++++
T Consensus       385 ~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          385 LGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHHHHHhhhcCCCc
Confidence            777666666665555554444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=4e-28  Score=251.90  Aligned_cols=399  Identities=14%  Similarity=0.077  Sum_probs=242.2

Q ss_pred             HHHHHHHHHhhhhhhHhhhhh-hhcccC------CCccchhHHHHHHHHHHHhhhccchhhhccc-CCchhhHHHHHHHH
Q 009409          119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS  190 (535)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~  190 (535)
                      +.+..++..+......+.++. +.+++|      .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~   96 (524)
T 2xut_A           17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC   96 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            344444555555555555555 677889      9999999999999999999999999999999 99999999999998


Q ss_pred             HHHHHHHhhhh-hhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHH---HHHhhhhHHHHHhhhHHHhcccc
Q 009409          191 LATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENL  266 (535)
Q Consensus       191 ~~~~~~~~~~~-~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~  266 (535)
                      ++.++.+ .++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ...+.++|.+++|.+++++.+..
T Consensus        97 ~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A           97 VGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             HHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             HHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8887775 555 778999999999999999999999999999999999876666   89999999999999999999889


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcc-h--hh----hhhhhhhhhh---HHH-------------h---
Q 009409          267 GWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPR-S--NY----INMKKSLSAS---LEE-------------M---  320 (535)
Q Consensus       267 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~----~~~~~~~~~~---~~~-------------~---  320 (535)
                      |||+.|++.+++.++..+......+..+.+..+..+. +  +.    .+.++...+.   ...             .   
T Consensus       176 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTL  255 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchh
Confidence            9999999988877665554443322211111000000 0  00    0000000000   000             0   


Q ss_pred             -------------ccCCCCCcHH------------HhhhcHHHHHHHHHH---HHHhhhhHHHHHhhHHHHHHHhCCCh-
Q 009409          321 -------------GESLKDVPWK------------AIFRSKAVWAMIYAH---FCGSWGHYTCLSWLPTYFSEELSLNL-  371 (535)
Q Consensus       321 -------------~~~~~~~~~~------------~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~p~~l~~~~g~s~-  371 (535)
                                   .+...+.+++            .....+..+......   .+....+......++.+..+ .+.+. 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  334 (524)
T 2xut_A          256 GIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQW  334 (524)
T ss_dssp             CSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCSS
T ss_pred             hhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCee
Confidence                         0000000110            001112222111111   11111111112223333322 23222 


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHHHH----HHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhhhc--------CCCcHHHH
Q 009409          372 TEAAWVSILPPLASVLVTSIAAQFA----DNLIATGVETTMVRKICQTIAFLSPAVCMTLSSID--------LGLPHWEI  439 (535)
Q Consensus       372 ~~~g~~~~~~~~~~~~~~~~~g~l~----dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  439 (535)
                      ...+.+.....++.+++..+.+++.    +|.+++..     .+.....+.++.++.+.+....        ..+..+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (524)
T 2xut_A          335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLT-----ALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQI  409 (524)
T ss_dssp             SCHHHHHTTSGGGHHHHGGGTTTC------------C-----CHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHH
T ss_pred             ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Confidence            2456666666666666666666553    34332110     1122334444444444433331        12445566


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhccc----------CcchHHHHHHH
Q 009409          440 VGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDST----------HSWSMSLFAPS  509 (535)
Q Consensus       440 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----------g~~~~~~~~~~  509 (535)
                      +..++.+++.+...+.......+..|++.||+++|+.++..++|..++|.+.|.+.+..          +.....|.+.+
T Consensus       410 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (524)
T 2xut_A          410 LPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFA  489 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHH
Confidence            66777788877777777778888899999999999999999999999999999998742          11122255555


Q ss_pred             HHHHHHHHhhhhhcc
Q 009409          510 IFFYLTGTIVWLAFA  524 (535)
Q Consensus       510 ~~~~~~~~~~~~~~~  524 (535)
                      ++.+++.++.+...+
T Consensus       490 ~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          490 GFAILAAIVFALYAR  504 (524)
T ss_dssp             HHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.59  E-value=4.2e-15  Score=150.57  Aligned_cols=177  Identities=14%  Similarity=0.054  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcc-cCCCccchhHHHHHHHHHHHhhhccchhhhccc--CCchhhHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS  190 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~~~~  190 (535)
                      +.+..+.+..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            334445555556666667777788886666 899999999999999999999999999999999  99999888877766


Q ss_pred             -HHHHHHHhhh-hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhh-HHHHHhhhHHHhccccc
Q 009409          191 -LATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG  267 (535)
Q Consensus       191 -~~~~~~~~~~-~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g  267 (535)
                       ++.++..... .+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.+++.+..|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             5554443222 25567778888999998888888899999999999999999999999999 99999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcc
Q 009409          268 WESVFYIFGLLGIAWFSGFKILQ  290 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~~~~~~~~  290 (535)
                      |+..|++.+++.++..+..+.+.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          412 WDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888777665555543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.48  E-value=3.7e-12  Score=130.39  Aligned_cols=176  Identities=9%  Similarity=-0.027  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH-----hCCChhhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHcCCCchhH
Q 009409          336 KAVWAMIYAHFCGSWGHYTCLSWLPTYFSEE-----LSLNLTEAAWVSILPPLASVLVTSIAAQFADN-LIATGVETTMV  409 (535)
Q Consensus       336 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~  409 (535)
                      +.++...+..++..+.++....+++.|+++.     +|.+..+.+++.+...++..++.++.|+++|| +|+|       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-------   85 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR-------   85 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-------
Confidence            4667777888888889999999999999988     99999999999999999999999999999999 8864       


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcc--hhHHHHHHHHhhhhhhhHH
Q 009409          410 RKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY--ASILLGITNTVGAVPGIVG  487 (535)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~ig  487 (535)
                        .....+.++..+...+... .++....+++.++.|++.+...+.....+.+.+++++  |+.+.++.+...++|..++
T Consensus        86 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  162 (491)
T 4aps_A           86 --PAVFWGGVLIMLGHIVLAL-PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA  162 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHS-CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence              3444444444444444443 3455666677778888888888888888888888888  7888998999999999999


Q ss_pred             HHHHHHHhcccCcchHHHHHHHHHHHHHHHhhhhh
Q 009409          488 VALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       488 p~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  522 (535)
                      |.++|.+.+.. +|...|++.++..+++.++.+..
T Consensus       163 ~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          163 PLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999987 49999988776665555544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.41  E-value=1.2e-11  Score=124.47  Aligned_cols=174  Identities=11%  Similarity=0.055  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 009409          338 VWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIA  417 (535)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  417 (535)
                      +..+.+..++...........+|.+. +.+|.+..+.|++.+...++..++.++.|+++||+|+|         .....+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r---------~~l~~~   97 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK---------AGIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch---------HHHHHH
Confidence            34445555556666666777778755 57899999999999999999999999999999999865         333344


Q ss_pred             HHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHh
Q 009409          418 FLSPAVCMTLSS--IDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLL  495 (535)
Q Consensus       418 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  495 (535)
                      .+..++..++..  ...++.+..++..++.|++.+...+....++.+..++++|+++.|+.+....+|..++|.+++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433331  223445566677788899888888888888888899999999999999999999999999999999


Q ss_pred             -cccCc------------------------chHHHHHHHHHHHHHHHhhhh
Q 009409          496 -DSTHS------------------------WSMSLFAPSIFFYLTGTIVWL  521 (535)
Q Consensus       496 -~~~g~------------------------~~~~~~~~~~~~~~~~~~~~~  521 (535)
                       +..+.                        |...|++.+++.++..++.+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             65544                        788887766655555444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=7.9e-13  Score=132.41  Aligned_cols=141  Identities=13%  Similarity=0.069  Sum_probs=115.8

Q ss_pred             CccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCCchhhHHH
Q 009409          147 NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATD  226 (535)
Q Consensus       147 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~  226 (535)
                      +....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.. ..++.+.+++..++.+++.+...+....
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667888888888899999999999999999999988888777665553 4455567777777788877666677788


Q ss_pred             HhhhcccccchhhHHHH-HHHhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhh
Q 009409          227 LIARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI  288 (535)
Q Consensus       227 ~~~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  288 (535)
                      +++|.+|++.|+++.++ ++....+|.+++|.++|++.+..|++..|++.+++.++..+..+.
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999 488888999999999999999889999999888877766555444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.38  E-value=5e-12  Score=130.57  Aligned_cols=176  Identities=11%  Similarity=0.042  Sum_probs=136.1

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHhC------CChhhHHHHHhhHHHHHHHHHHHHHHHHHHH-HHcCCCch
Q 009409          335 SKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELS------LNLTEAAWVSILPPLASVLVTSIAAQFADNL-IATGVETT  407 (535)
Q Consensus       335 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~  407 (535)
                      ++.++.+.+..++...+++....++|.|+++.+|      ++..+.+++.+...++..++.++.|+++||+ |+|     
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----   85 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY-----   85 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Confidence            3556677788888888889999999999998899      9999999999999999999999999999999 864     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHH---HHHhhhhhh
Q 009409          408 MVRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGI---TNTVGAVPG  484 (535)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~  484 (535)
                          .....+.++.++..++......+....++..++.|++.+...+.....+.+.+++++|+++.+.   .+...++|.
T Consensus        86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  161 (524)
T 2xut_A           86 ----NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS  161 (524)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence                2333444444444444333222455566677778888888888888888888999999776666   889999999


Q ss_pred             hHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhhh
Q 009409          485 IVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVW  520 (535)
Q Consensus       485 ~igp~i~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  520 (535)
                      .++|.++|.+.+.. +|...|.+.+++.++..++.+
T Consensus       162 ~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          162 FFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999877 488888887776555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.25  E-value=2e-11  Score=120.21  Aligned_cols=175  Identities=7%  Similarity=-0.048  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 009409          340 AMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFL  419 (535)
Q Consensus       340 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  419 (535)
                      .+.+..++...........+|.+. +++|.+..+.+++.+...++..++.++.|+++||+|+|+.-         ..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~---------~~~~~   73 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI---------LVGMS   73 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC---------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---------HHHHH
Confidence            445556666666677777888766 46899999999999999999999999999999999977442         12222


Q ss_pred             HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhhhhHHHHHHHHHhcccC
Q 009409          420 SPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGYLLDSTH  499 (535)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  499 (535)
                      ...+...+.... ++....++..++.|++.+...+.......+..++++|+++.++.+....+|..++|.++|.+.+.. 
T Consensus        74 ~~~~~~~~~~~~-~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-  151 (375)
T 2gfp_A           74 IFMLATLVAVTT-SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-  151 (375)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-
T ss_pred             HHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-
Confidence            222222222221 234455566677788888777777778888888999999999999999999999999999999877 


Q ss_pred             cchHHHHHHHHHHHHHHHhhhhhccCC
Q 009409          500 SWSMSLFAPSIFFYLTGTIVWLAFASS  526 (535)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (535)
                      +|...|.+.++..++..+..+...+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (375)
T 2gfp_A          152 NWRACYLFLLVLCAGVTFSMARWMPET  178 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence            488888877776665555444444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.22  E-value=1.3e-10  Score=118.75  Aligned_cols=181  Identities=11%  Similarity=0.017  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT  193 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~  193 (535)
                      +.........+......+.+..+.|.+.+..+.+............+...++.++++++.||+|||+.++.+....+++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence            44455555566666667777778888888899888888888888888899999999999999999999998888777766


Q ss_pred             HHHHhhh----hhhhHHH-HHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhcc----
Q 009409          194 ALLPLLA----GFMPGLV-LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE----  264 (535)
Q Consensus       194 ~~~~~~~----~~~~~l~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----  264 (535)
                      +..+...    +....++ +..+..+++ ....+..+.+.+|.+|.+.|++++|+......+|.++++.+.+.+.+    
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~  435 (491)
T 4gc0_A          357 FSLGTAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL  435 (491)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543221    1111122 222222233 33447778999999999999999999999999999999988776654    


Q ss_pred             --ccchhHHHHHHHHHHHHHHH-HhhhcccCCCC
Q 009409          265 --NLGWESVFYIFGLLGIAWFS-GFKILQEGETS  295 (535)
Q Consensus       265 --~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~~  295 (535)
                        ..++.+.|++.++++++..+ .++++||++.+
T Consensus       436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence              34667788888887766544 55677876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-27
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-10

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (281), Expect = 2e-27
 Identities = 62/420 (14%), Positives = 125/420 (29%), Gaps = 10/420 (2%)

Query: 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGW 171
           R+++       +    + + N ++A+ P     G++    G   S     Y  S+   G 
Sbjct: 23  RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGS 81

Query: 172 LAKIFGGRKVLQTGVLIWSLATA---LLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLI 228
           ++     R  L  G+++ +        +P     +  + +   L G  +G+        +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 229 ARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKI 288
                 +ER   VS      + G     LL    +                    + F  
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201

Query: 289 LQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCG 348
               +T     L P   Y N          E   + K +  + +  +K +W +  A+   
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV 261

Query: 349 SWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTM 408
               Y  L W PTY  E     L +++W   L   A +  T +    +D +       T 
Sbjct: 262 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321

Query: 409 VRKICQTIAFLSPAVCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEY 468
           V  +                +  + +    ++G L  G  +     +           + 
Sbjct: 322 VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL-----APKKA 376

Query: 469 ASILLGITNTVGAVPG-IVGVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSK 527
           A    G T   G + G +   A+ GY +D        +            ++ +     +
Sbjct: 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 36/408 (8%), Positives = 89/408 (21%), Gaps = 29/408 (7%)

Query: 133 LSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA 192
                I +      + S  G++ ++      L Q   G L+   G RK L   +    + 
Sbjct: 27  FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86

Query: 193 TALLPLLAGFMPGLVLSRVLV-----GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGG 247
            A   +            V        +G   +  A              +         
Sbjct: 87  FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Query: 248 LSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYI 307
              G   G  +   +         +   G   I     F    +  +S            
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS------ATVANA 200

Query: 308 NMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEEL 367
                 + SL+   E  +      +       +  Y  F   + ++    +        +
Sbjct: 201 VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260

Query: 368 SLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL 427
              +T    +                  A  +    +    +      +   +      +
Sbjct: 261 FGYVTTMGEL----------------LNASIMFFAPLIINRIGGKNALLLAGTIMSVRII 304

Query: 428 SSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVG-AVPGIV 486
            S         ++        +    +             +++ +  +       +  I 
Sbjct: 305 GSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364

Query: 487 GVALTGYLLDSTHSWSMSLFAPSIFFYLTGTIVWLAFASSKPQNFSTR 534
              L G + +S   +  +     +       I     +   P +   R
Sbjct: 365 MSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRR 411

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.5
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.5

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.2e-39  Score=323.15  Aligned_cols=402  Identities=14%  Similarity=0.166  Sum_probs=301.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      +|.++..+++.++..++++..++...|.+. |+|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            567777778888888899999998888775 5899999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhh---hhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhhHHHHHhhhHHHhccc-cc
Q 009409          192 ATALLPLLA---GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIEN-LG  267 (535)
Q Consensus       192 ~~~~~~~~~---~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g  267 (535)
                      +.++.+...   ++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+... .+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  181 (447)
T d1pw4a_         102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  181 (447)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence            887765432   46788999999999999999999999999999999999999999999999999999999887765 47


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHHHH
Q 009409          268 WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFC  347 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  347 (535)
                      ||+.|++.+++.++..+..+.+.+++++.......++......+ ...+..+.+...++...+..++++.++......++
T Consensus       182 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (447)
T d1pw4a_         182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD-DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF  260 (447)
T ss_dssp             STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhccc-chhhccccccchhhHHHHHHHcCchHHHHHHHhhh
Confidence            99999999888776655555554443333222111111110000 00111111122233345678889999999999999


Q ss_pred             HhhhhHHHHHhhHHHHHHHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHH
Q 009409          348 GSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPAVCMTL  427 (535)
Q Consensus       348 ~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (535)
                      .....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||+++++      +.................
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  334 (447)
T d1pw4a_         261 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIV  334 (447)
T ss_dssp             HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC------HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc------cccccchhHHHHHHHHHH
Confidence            99999999999999999889999999999999999999999999999999987652      122222222222222222


Q ss_pred             hhhcC-CCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHHHhhhhh-hhHHHHHHHHHhcccCcchHHH
Q 009409          428 SSIDL-GLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVP-GIVGVALTGYLLDSTHSWSMSL  505 (535)
Q Consensus       428 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg-~~igp~i~G~l~~~~g~~~~~~  505 (535)
                      ..... .+....++..++.|++.+...+.......+..|++.+|++.|+.+.+++++ .+++|.+.|++.|..| +...|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~  413 (447)
T d1pw4a_         335 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGF  413 (447)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHH
Confidence            22222 233444455556666666656666666777789999999999999988874 5678999999999985 77777


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 009409          506 FAPSIFFYLTGTIVWLA  522 (535)
Q Consensus       506 ~~~~~~~~~~~~~~~~~  522 (535)
                      .+.+++.+++.++.+..
T Consensus       414 ~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         414 MVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            76666555555544444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.9e-28  Score=237.44  Aligned_cols=390  Identities=12%  Similarity=-0.011  Sum_probs=257.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHH
Q 009409          113 YKLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL  191 (535)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~  191 (535)
                      ++.+..+.+.+|+..+....+.+.+|. +.+++|+|..++|++.+++.+++.++++++|+++||+|||++++++..+..+
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV   85 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            344555666777778888888888887 5677999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHhhhhh---hhHHHHHHHHhhhccCCchhhHHHHhhhcccc--cchhhHHHHHHHhhhhHHHHHhhhHHHhcccc
Q 009409          192 ATALLPLLAGF---MPGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENL  266 (535)
Q Consensus       192 ~~~~~~~~~~~---~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  266 (535)
                      +..+.......   ....++.+++.+.+.+...........+..++  +++....+........+..++|.+++.+.+. 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  164 (417)
T d1pv7a_          86 MFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-  164 (417)
T ss_dssp             THHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-
Confidence            77666433222   12234555666655555554444444433332  3456677888888899999999999988865 


Q ss_pred             chhHHHHHHHHHH-HHHHHHhhhcccCCCCCCCCCCcchhhhhhhhhhhhhHHHhccCCCCCcHHHhhhcHHHHHHHHHH
Q 009409          267 GWESVFYIFGLLG-IAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH  345 (535)
Q Consensus       267 gw~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  345 (535)
                      +|++.++...... +...+..+..++++........+++.               ++........+..+++..+......
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  229 (417)
T d1pv7a_         165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN---------------HSAFSLKLALELFRQPKLWFLSLYV  229 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC---------------CCCCCHHHHHHHTTSSHHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh---------------cccccccccccccccccccchhhhh
Confidence            4555555554444 44444444444433322221111000               0001111123344444444444444


Q ss_pred             HHHhhhhHHHHHhhHHHHH---HHhCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Q 009409          346 FCGSWGHYTCLSWLPTYFS---EELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIATGVETTMVRKICQTIAFLSPA  422 (535)
Q Consensus       346 ~~~~~~~~~~~~~~p~~l~---~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  422 (535)
                      ++............+.+..   +..+.+....+.......++..++..+.+++.||.+++         .....+.+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~  300 (417)
T d1pv7a_         230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHH
Confidence            4444333333333333332   22234556667777888888889999999999998754         33344444444


Q ss_pred             HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCcchhHHHHHHH-HhhhhhhhHHHHHHHHHhcccCcc
Q 009409          423 VCMTLSSIDLGLPHWEIVGILTAGLALSSFALSGLYCTHQDISPEYASILLGITN-TVGAVPGIVGVALTGYLLDSTHSW  501 (535)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~igp~i~G~l~~~~g~~  501 (535)
                      +....... .++.+..++..++.+++.+...+.......+.+|++.|+++.|+.. ....+|..++|.++|++.|..| +
T Consensus       301 ~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~  378 (417)
T d1pv7a_         301 VRIIGSSF-ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-F  378 (417)
T ss_dssp             HHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-H
T ss_pred             Hhhhcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-H
Confidence            44444333 3445556666677788888777888888888899999999999865 5567999999999999999985 8


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 009409          502 SMSLFAPSIFFYLTGTIVWLAFASSKPQ  529 (535)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (535)
                      ...|++.+++.++..++.++..+++++.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         379 QGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            8888888877777766666666655543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.1e-14  Score=142.44  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=135.1

Q ss_pred             hhhHhhhhhhhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 009409          131 VNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSR  210 (535)
Q Consensus       131 ~~~~~~~~~~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (535)
                      .......+...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++.. ..++.+.+++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  319 (417)
T d1pv7a_         241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILK  319 (417)
T ss_dssp             HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TCCCHHHHHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc-cccccchhhHHH
Confidence            3333344445566667778888899999999999999999999999999999999999888887764 566778888999


Q ss_pred             HHhhhccCCchhhHHHHhhhcccccchhhHHHHHH-HhhhhHHHHHhhhHHHhccccchhHHHHHHHHHHHHHHHHhhhc
Q 009409          211 VLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVF-GGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       211 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      ++.|++.+...+...+++.|.+|++.|++++++.. ....+|.+++|+++|++.+..||++.|++.+++.++..++..++
T Consensus       320 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999864 56779999999999999999999999999998877665555444


Q ss_pred             cc
Q 009409          290 QE  291 (535)
Q Consensus       290 ~~  291 (535)
                      .+
T Consensus       400 l~  401 (417)
T d1pv7a_         400 LS  401 (417)
T ss_dssp             SC
T ss_pred             hc
Confidence            43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=5.2e-14  Score=139.64  Aligned_cols=176  Identities=15%  Similarity=0.057  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHhhhhh-hhcccCCCccchhHHHHHHHHHHHhhhccchhhhcccCCchhhHHHHHHHHHH
Q 009409          114 KLIGTTSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLA  192 (535)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~  192 (535)
                      +.+..+.+..++............|. +.+.++.+..+.++..+...++..++.++.|++.||++|++..........+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  328 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  328 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence            33334444444455555555555555 66678999999999999999999999999999999999877554443332222


Q ss_pred             HHHHHh----hhhhhhHHHHHHHHhhhccCCchhhHHHHhhhcccccchhhHHHHHHHhhhh-HHHHHhhhHHHhccccc
Q 009409          193 TALLPL----LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLG  267 (535)
Q Consensus       193 ~~~~~~----~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~g  267 (535)
                      ......    ...+.+..+++.++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|++.|++.+..|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g  408 (447)
T d1pw4a_         329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  408 (447)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222211    1345566777888889998888889999999999999999999999888776 56778999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhc
Q 009409          268 WESVFYIFGLLGIAWFSGFKIL  289 (535)
Q Consensus       268 w~~~f~~~~~~~~~~~~~~~~~  289 (535)
                      |+..|++.+++.++..++...+
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         409 WDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887766655444444