Citrus Sinensis ID: 009410
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | 2.2.26 [Sep-21-2011] | |||||||
| Q55DL0 | 503 | Dihydropyrimidinase OS=Di | yes | no | 0.897 | 0.954 | 0.511 | 1e-137 | |
| Q9I676 | 479 | D-hydantoinase/dihydropyr | yes | no | 0.861 | 0.962 | 0.490 | 1e-131 | |
| Q9EQF5 | 519 | Dihydropyrimidinase OS=Mu | yes | no | 0.885 | 0.913 | 0.481 | 1e-130 | |
| Q59699 | 495 | D-hydantoinase/dihydropyr | yes | no | 0.807 | 0.872 | 0.504 | 1e-127 | |
| Q63150 | 519 | Dihydropyrimidinase OS=Ra | yes | no | 0.885 | 0.913 | 0.469 | 1e-126 | |
| Q14117 | 519 | Dihydropyrimidinase OS=Ho | yes | no | 0.895 | 0.922 | 0.474 | 1e-126 | |
| Q21773 | 489 | Dihydropyrimidinase 1 OS= | yes | no | 0.859 | 0.940 | 0.478 | 1e-119 | |
| Q60Q85 | 489 | Dihydropyrimidinase 1 OS= | N/A | no | 0.859 | 0.940 | 0.472 | 1e-119 | |
| Q61YQ1 | 518 | Dihydropyrimidinase 2 OS= | N/A | no | 0.842 | 0.870 | 0.484 | 1e-119 | |
| Q18677 | 520 | Dihydropyrimidinase 2 OS= | no | no | 0.842 | 0.867 | 0.491 | 1e-118 |
| >sp|Q55DL0|DPYS_DICDI Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/489 (51%), Positives = 331/489 (67%), Gaps = 9/489 (1%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 243 VYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRP 302
Query: 346 SGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVWDTM 401
K L LA G L VGTD+C F + QKA G DDF KIP NG+E+RM +VW+
Sbjct: 303 DPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461
V +G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +
Sbjct: 363 VNTGKLTWCQFVRATSSEAARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAV 422
Query: 462 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYL 521
D N++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K
Sbjct: 423 DFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVR 481
Query: 522 SSLQAPVKR 530
+ L V R
Sbjct: 482 NELLRKVDR 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Dictyostelium discoideum (taxid: 44689) EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 2 |
| >sp|Q9I676|HYDA_PSEAE D-hydantoinase/dihydropyrimidinase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dht PE=3 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/465 (49%), Positives = 311/465 (66%), Gaps = 4/465 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LI+G TVV ADV +G++ A+ N+ VLD G+++MPGGIDPHTH+
Sbjct: 3 LLIRGATVVTHEESYRADVLCANGLIQAIGENLETPSGCDVLDGGGQYLMPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ +DFFSG AA LAGGTT IDFVIP SL F + A+ S DYGF
Sbjct: 63 QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPRQSLLEAFHTWRGWAQKSAADYGF 122
Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W + V+ EM +V + G+NSFK FMAYK + M D+ L+ F+RC LGA+ V
Sbjct: 123 HVAITWWSDEVAREMGELVAQHGVNSFKHFMAYKNAIMAADDTLVASFERCLELGAVPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ VF Q++++ G+TGPE H LSRPP +EGEA +RAIR+AE + TPLY+VH+ S
Sbjct: 183 HAENGELVFHLQQKLLAQGLTGPEAHPLSRPPQVEGEAASRAIRIAETLGTPLYLVHISS 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+A++EIA AR GQ V GE + L+LDDS H D+ TAA YVMSPP R H +AL
Sbjct: 243 REALDEIAYARAKGQPVYGEVLAGHLLLDDSVYRHPDWATAAGYVMSPPFRPVEHQEALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVT 410
L +G L TDHC F + QKA G DDF KIPN GIE+RM L+WD V SG++S+
Sbjct: 303 RGLQSGNLHTTATDHCCFCAEQKAMGRDDFSKIPNGTAGIEDRMALLWDAGVNSGRLSMH 362
Query: 411 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 470
++V LTST A+IFN++PRKGAI VG+DAD+++++P S ++A +HH R+D N++EGR
Sbjct: 363 EFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGSRTLSAATHHQRVDFNIFEGRT 422
Query: 471 VKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDK 515
V+G TI+ G+++W +L PG+G+Y+E + ++ L +
Sbjct: 423 VRGIPSHTISQGKLLWAAGDLRAEPGAGRYVERPAYPSVYEVLGR 467
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Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q9EQF5|DPYS_MOUSE Dihydropyrimidinase OS=Mus musculus GN=Dpys PE=2 SV=2 | Back alignment and function description |
|---|
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/488 (48%), Positives = 319/488 (65%), Gaps = 14/488 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
++LI+GG +VN Q+ADV VEDG+V A+ ++ +D +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF+ G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W + V +EM+ + ++KG+NSFK FMAYKG +M+ DE L F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + +A AR+AG V GEP+ +GL D W ++ AA +VM PP+R
Sbjct: 246 VVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTDGRQYWSEEWSHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVWDTMVE 403
L LA G L G+D+C FN+ QKA G DDF KIP NG+E+RM ++W+ V
Sbjct: 306 LTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRRISAKTHHQAVNF 425
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 522
N++EG G VTI+ GRVV+E NV G GK+I +PF Y++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFNVTAGHGKFIPRQPFAEYIYKRIKQRDQ---T 482
Query: 523 SLQAPVKR 530
PVKR
Sbjct: 483 CTPVPVKR 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase OS=Pseudomonas putida GN=dht PE=1 SV=2 | Back alignment and function description |
|---|
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/436 (50%), Positives = 299/436 (68%), Gaps = 4/436 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LI+G TVV ADV DG++ A+ PN+ D ++LD +G+++MPGGIDPHTH+
Sbjct: 3 LLIRGATVVTHEESYPADVLCVDGLIRAIGPNLEPPTDCEILDGSGQYLMPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ +DFFSG AA LAGGTT IDFVIP SL F + A+ S DYGF
Sbjct: 63 QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPQQSLLEAFHTWRGWAQKSASDYGF 122
Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W E V++EM +V + G+NSFK FMAYK + M D+ L+ F+RC LGA+ V
Sbjct: 123 HVAITWWSEQVAEEMGELVAKHGVNSFKHFMAYKNAIMAADDTLVASFERCLQLGAVPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ V+ QK+++ G+TGPE H LSRP +EGEA +RAIR+AE + TPLYVVH+ S
Sbjct: 183 HAENGELVYHLQKKLLAQGMTGPEAHPLSRPSQVEGEAASRAIRIAETIGTPLYVVHISS 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+A++EI AR GQ V GE + L+LDDS D+ TAA YVMSPP R H +AL
Sbjct: 243 REALDEITYARAKGQPVYGEVLPGHLLLDDSVYRDPDWATAAGYVMSPPFRPREHQEALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVT 410
L +G L TDHC F + QKA G DDF +IPN GIE+RM ++WD V SG++S+
Sbjct: 303 RGLQSGNLHTTATDHCCFCAEQKAMGRDDFSRIPNGTAGIEDRMAVLWDAGVNSGRLSMH 362
Query: 411 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 470
++V LTST A+IFN++PRKGAI VG+DAD+++++P + ++A++HH R+D N++EGR
Sbjct: 363 EFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGTRTLSAQTHHQRVDFNIFEGRT 422
Query: 471 VKGKVEVTIAGGRVVW 486
V+G TI+ G+V+W
Sbjct: 423 VRGVPSHTISQGKVLW 438
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Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids. Pseudomonas putida (taxid: 303) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q63150|DPYS_RAT Dihydropyrimidinase OS=Rattus norvegicus GN=Dpys PE=1 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/488 (46%), Positives = 317/488 (64%), Gaps = 14/488 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVMPGGID 109
++LI+GG VVN Q+ADV VEDG+V A+ P + +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W + V +EM+ + ++KG+NSFK FMAYK +M+ D+ + F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
+VHVMS A + IA A++ G+ V GEP+ +GL D + W+ ++ AA +VM PP+R
Sbjct: 246 IVHVMSKSAAKVIADAKREGKVVYGEPIAAGLGTDGTQYWNKEWRHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVWDTMVE 403
L LA G L G+D+C FN+ QKA G DDF KIP NG+E+RM ++W+ V
Sbjct: 306 STPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRTISAKTHHQAVNF 425
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 522
N++EG G VTI+ GRVV+E +V G GK+I +PF +++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFDVTAGHGKFIPRQPFAEFIYKRVKQRDQ---T 482
Query: 523 SLQAPVKR 530
PVKR
Sbjct: 483 CTPIPVKR 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q14117|DPYS_HUMAN Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/493 (47%), Positives = 317/493 (64%), Gaps = 14/493 (2%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVM 104
+ + S++LI+GG VVN ++ADV VEDG+V A+ P ++VLDA GK V+
Sbjct: 1 MAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVL 60
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE +
Sbjct: 61 PGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSW 120
Query: 164 AKNS-CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A C DY H+A+T W + V +EM+++V++KG+NSFK FMAYK +M+ D L E F
Sbjct: 121 ADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS 180
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A V
Sbjct: 181 RCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAV 240
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
N PLY+VHVMS A + IA AR+ G+ V GEP+ + L D + W+ ++ AA +VM PP
Sbjct: 241 NCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPP 300
Query: 343 IRASGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVW 398
+R L LA L GTD+C FN+ QKA G DDF KIP NG+E+RM ++W
Sbjct: 301 LRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIW 360
Query: 399 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 458
+ V SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P + I+A++HH
Sbjct: 361 EKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHH 420
Query: 459 SRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 517
++ N++EG G VTI+ G+VV+E +V G GK+I +PF Y++ + + D
Sbjct: 421 QAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRD 480
Query: 518 AKYLSSLQAPVKR 530
+ PV+R
Sbjct: 481 R---TCTPTPVER 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q21773|DHP1_CAEEL Dihydropyrimidinase 1 OS=Caenorhabditis elegans GN=dhp-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 297/472 (62%), Gaps = 12/472 (2%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTVVN ADV V +GI+V V PNI D +V+DAT + V+PGGIDPH
Sbjct: 2 SPPLVIKNGTVVNEDGMFKADVLVRNGIIVEVSPNITALPDTEVIDATDRLVIPGGIDPH 61
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP--ING-SLTAGFEAYEKKAKNS- 167
TH+ M +MG T DDF G AA+AGGTTM IDF P NG SL AG+ + A
Sbjct: 62 THMQMPYMGEVTKDDFLKGTEAAVAGGTTMIIDFCCPDHRNGESLIAGYNRWRSWADPKV 121
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DYG +AIT W +++M ++ E G+NSFKF+MAY+ + M+ D+ L G + C
Sbjct: 122 CCDYGLSVAITMWRPETAEQMAIITSPEFGVNSFKFYMAYENTLMVRDDELFRGMQECAK 181
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L ALA VH ENG + E + ++ G+TGPEGH SRP +E EAT RA LA N P+
Sbjct: 182 LRALARVHCENGSVIKEKEIDLLAKGVTGPEGHTQSRPEEIEAEATNRACVLAAQANCPV 241
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RA 345
Y+VHVM+ A I+ R G V GEP+ +GL LD S ++ D++ AA+YVMSPP+ R
Sbjct: 242 YIVHVMTKGAASAISHHRAQGSIVFGEPIAAGLALDGSHYYNEDWLHAARYVMSPPLSRD 301
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMV 402
+ L LA G L L GTD+C ++ QK+ G +F KIPNGI E+RM +VW+ V
Sbjct: 302 PTTPELLMKLLAAGELHLTGTDNCTYDCRQKSLGKGNFTKIPNGINGVEDRMSVVWEKGV 361
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
SG I YV +TS+ A+IFN+YPRKG I VGSDADI+IFNPN++ I+ +HH LD
Sbjct: 362 HSGIIDPMRYVSITSSTAAKIFNIYPRKGRIAVGSDADIVIFNPNATRTISKDTHHHNLD 421
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM---RPFNYLFH 511
N++EG G EVTI+ GR+VW + +L VPGSGK+I + PF + H
Sbjct: 422 FNIFEGINCHGVAEVTISRGRIVWAHGKLQTVPGSGKFIPLLANSPFVFSTH 473
|
Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q60Q85|DHP1_CAEBR Dihydropyrimidinase 1 OS=Caenorhabditis briggsae GN=dhp-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/472 (47%), Positives = 300/472 (63%), Gaps = 12/472 (2%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTVVN ADV V++GI+V V P I +++++DAT + V+PGGIDPH
Sbjct: 2 SPPLVIKNGTVVNEDGMFKADVLVKNGIIVEVSPKIIALPEMEIIDATDRLVIPGGIDPH 61
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP--ING-SLTAGFEAYEKKAKNS- 167
TH+ M + G T DDF G AA+AGGTTM IDF P NG SL AG+ + A
Sbjct: 62 THMQMPYAGEVTKDDFLRGTQAAVAGGTTMIIDFCCPDHRNGESLMAGYARWRSWADPKV 121
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DYG +AIT+W +D+M V+ E G+NSFKF+MAY+G+ M+ D+ + + C
Sbjct: 122 CCDYGLSVAITQWRPETADQMAVITSPEFGVNSFKFYMAYEGTLMVRDDEMYRAMQECAK 181
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L ALA VHAENG + E + ++ G+TGPEGH SRP +E EAT RA LA N P+
Sbjct: 182 LRALARVHAENGSVIKEREIDLLAKGVTGPEGHTQSRPEEIEAEATNRACVLAAQANCPV 241
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RA 345
Y+VHVM+ A I+ R G V GEP+ +GL LD S ++ D++ AA+YVMSPP+ R
Sbjct: 242 YIVHVMTKGAAAAISHHRAQGSIVFGEPIAAGLALDGSHYYNEDWLHAARYVMSPPLSRD 301
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMV 402
+ L LA G L L GTD+C ++ QK+ G +F KIPNGI E+RM +VW+ V
Sbjct: 302 PTTPELLMKLLAAGELHLTGTDNCTYDGCQKSLGKGNFTKIPNGINGVEDRMSVVWEKGV 361
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
SG I YV +TS A+IFN+YP+KG I VGSDADI+IFNPN++ I+A +HH LD
Sbjct: 362 HSGIIDPMRYVSITSATAAKIFNIYPKKGRIAVGSDADIVIFNPNATRTISAETHHHNLD 421
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM---RPFNYLFH 511
N++EG + G E+TI+ GR+VW N +L VPGSGK++ + PF + H
Sbjct: 422 FNIFEGIKCHGVAEITISRGRIVWANGQLQTVPGSGKFVPLLANSPFVFSSH 473
|
Caenorhabditis briggsae (taxid: 6238) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q61YQ1|DHP2_CAEBR Dihydropyrimidinase 2 OS=Caenorhabditis briggsae GN=dhp-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/458 (48%), Positives = 294/458 (64%), Gaps = 7/458 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK GT+VN +DV V DG +V + P+I+ ++V+DAT +FV+PGGIDPHTH+
Sbjct: 3 LLIKNGTIVNDDAMFKSDVLVHDGKIVEIAPSIDPTPGLEVVDATDRFVIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYG 172
+ FMG DDF G AA+AGGTTM IDFVIP G SL ++ + A + DYG
Sbjct: 63 QLPFMGEVAKDDFHRGTEAAVAGGTTMIIDFVIPTKGESLLVAYDRWRGWADPKVVCDYG 122
Query: 173 FHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
MAIT W + ++ EME++ K + GINSFKFF+AY G FM+ DE +G +C L ALA
Sbjct: 123 LSMAITSWGQEIAKEMEMVTKADYGINSFKFFLAYAGVFMVRDEEFYQGMLQCAKLRALA 182
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENG + E + ++ GITGPEGH SRP LE EAT RA +A N PLYVVHV
Sbjct: 183 RVHAENGAVIAERCEHLLSSGITGPEGHTQSRPEELEAEATFRACTMASQANCPLYVVHV 242
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RASGHNK 350
MS A IA RK G V GEP+ +GL D S ++ D++ AA+Y+MSPP+ R
Sbjct: 243 MSKGAAAAIAHHRKKGAVVFGEPIAAGLATDGSHYYNEDWLHAARYIMSPPLSRDPSTPN 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVWDTMVESGQI 407
AL LA G L L TD+C F+ QK+ G DDF KIP NG+E+RM +VWD V +G I
Sbjct: 303 ALMKLLAAGELHLTATDNCTFDCHQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGII 362
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
+V +TST A+IFN YPRKG I VGSDADI+++N N++ I+ +HH +D N++E
Sbjct: 363 DPMKFVAVTSTMAAKIFNCYPRKGRIAVGSDADIVVWNANATRTISKDTHHHAIDFNIFE 422
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505
G +V G E TI GR+VW + +L V G+G+++ + P
Sbjct: 423 GMQVHGVPETTICRGRIVWADGQLRTVQGAGRFVPLPP 460
|
Caenorhabditis briggsae (taxid: 6238) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q18677|DHP2_CAEEL Dihydropyrimidinase 2 OS=Caenorhabditis elegans GN=dhp-2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/458 (49%), Positives = 291/458 (63%), Gaps = 7/458 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK GT+VN +DV V DG +V + P+I ++V+DAT + V+PGGIDPHTH+
Sbjct: 3 LLIKNGTIVNDDAIFKSDVLVLDGRIVEIAPSIQPTPGLEVVDATDRLVIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYG 172
+ FMG DDF G AA+AGGTTM IDFVIP G SL ++ + A + DYG
Sbjct: 63 QLPFMGEIAKDDFHRGTEAAVAGGTTMIIDFVIPTKGESLLVAYDRWRGWADPKVVCDYG 122
Query: 173 FHMAITKWDEVVSDEMEVMV-KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
MAIT W ++ EME++ E GINSFKFF+AY G FM+ DE +G +C L ALA
Sbjct: 123 LSMAITSWGPEIAKEMEIVTGAEYGINSFKFFLAYAGVFMVRDEEFYQGMIQCAKLRALA 182
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENG + E + ++ GITGPEGH SRP LE EAT RA +A N PLYVVHV
Sbjct: 183 RVHAENGSVIAERCEHLLSSGITGPEGHTQSRPEELEAEATFRACTMASQANCPLYVVHV 242
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RASGHNK 350
MS A IA RK G V GEP+ +GL D S ++ D++ AA+YVMSPP+ R
Sbjct: 243 MSKGAAAAIAHHRKKGAVVFGEPIAAGLATDGSHYYNEDWLHAARYVMSPPLSRDPSTPS 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVWDTMVESGQI 407
AL LA G L L TD+C F+ QK+ G DDF KIP NG+E+RM +VWD V +G I
Sbjct: 303 ALMKLLAAGELHLTATDNCTFDCQQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGII 362
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
+V +TST A+IFN YP+KG I VGSDADI+I+N N++ I+ +HH +D N++E
Sbjct: 363 DPMRFVAVTSTMAAKIFNCYPQKGRIAVGSDADIVIWNANATRTISKDTHHHAIDFNIFE 422
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505
G +V G E+TI+ GR VW N +L V GSG++I + P
Sbjct: 423 GMQVHGVPEITISRGRTVWANGQLKTVQGSGQFIPLAP 460
|
Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| 359479124 | 536 | PREDICTED: dihydropyrimidinase-like [Vit | 0.936 | 0.934 | 0.851 | 0.0 | |
| 224103983 | 531 | predicted protein [Populus trichocarpa] | 0.951 | 0.958 | 0.830 | 0.0 | |
| 357493879 | 542 | Dihydropyrimidinase [Medicago truncatula | 0.966 | 0.953 | 0.813 | 0.0 | |
| 297811343 | 531 | dihydropyrimidinase [Arabidopsis lyrata | 0.960 | 0.967 | 0.808 | 0.0 | |
| 42567801 | 531 | pyrimidine 2 [Arabidopsis thaliana] gi|2 | 0.960 | 0.967 | 0.803 | 0.0 | |
| 224059686 | 506 | predicted protein [Populus trichocarpa] | 0.936 | 0.990 | 0.833 | 0.0 | |
| 449444857 | 528 | PREDICTED: dihydropyrimidinase-like [Cuc | 0.966 | 0.979 | 0.802 | 0.0 | |
| 356554724 | 524 | PREDICTED: dihydropyrimidinase-like [Gly | 0.919 | 0.938 | 0.830 | 0.0 | |
| 357493867 | 534 | Dihydropyrimidinase [Medicago truncatula | 0.966 | 0.968 | 0.794 | 0.0 | |
| 358249144 | 526 | uncharacterized protein LOC100781590 pre | 0.977 | 0.994 | 0.782 | 0.0 |
| >gi|359479124|ref|XP_002273526.2| PREDICTED: dihydropyrimidinase-like [Vitis vinifera] gi|296083879|emb|CBI24267.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/506 (85%), Positives = 470/506 (92%), Gaps = 5/506 (0%)
Query: 35 FCDAGSEYGGPQCGI--QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
FCDAG+ +G C + +S+SK+LIKGGTVVNAHHQ+IADVYVEDGI+VAV+PNI VGDD
Sbjct: 31 FCDAGTGFGDSGCVVSSKSASKLLIKGGTVVNAHHQEIADVYVEDGIIVAVKPNIKVGDD 90
Query: 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+ GS
Sbjct: 91 VTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVKGS 150
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
L+ G EAY+ KAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFF+AYKG+ MI
Sbjct: 151 LSKGLEAYKDKAKKSCMDYGFHMAITKWDENVSREMEIMVKEKGINSFKFFLAYKGALMI 210
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
NDELL+EG K+CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP+LEGEAT
Sbjct: 211 NDELLLEGLKKCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEGEAT 270
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIGEPVVSGLVLDDS LW DF+
Sbjct: 271 ARAIRLASFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVVSGLVLDDSGLWDPDFI 330
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NG 389
AAKYVMSPPIRA GH+KALQAAL+TG LQLVGTDHCAFNSTQKAFGIDDFRKIP NG
Sbjct: 331 NAAKYVMSPPIRALGHDKALQAALSTGNLQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 390
Query: 390 IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 449
IEERMHLVWDTMVESGQISVTDYVR+TSTECARIFN+YPRKGAIL GSDADIII NPNSS
Sbjct: 391 IEERMHLVWDTMVESGQISVTDYVRITSTECARIFNMYPRKGAILAGSDADIIILNPNSS 450
Query: 450 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYL 509
F+ITARSHHSRLDTNV+EGR+ KGKVEVTIAGG++VWENDEL VPGSGKYIEM+PF+YL
Sbjct: 451 FQITARSHHSRLDTNVFEGRKGKGKVEVTIAGGKIVWENDELKAVPGSGKYIEMQPFSYL 510
Query: 510 FHGLDKADAKYLSSLQAPVKRLKSST 535
F+G+DK DAKYLSSLQAPV+R K+++
Sbjct: 511 FNGIDKVDAKYLSSLQAPVQRSKAAS 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103983|ref|XP_002313270.1| predicted protein [Populus trichocarpa] gi|222849678|gb|EEE87225.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/512 (83%), Positives = 468/512 (91%), Gaps = 3/512 (0%)
Query: 27 PISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN 86
P + +N FC+AG YG CG+ SS+K+LIKGGTVVNAHHQ++ADVYVEDGI+VAV+P+
Sbjct: 20 PSNSQSNQFCEAGIGYGEVGCGLSSSTKLLIKGGTVVNAHHQEVADVYVEDGIIVAVKPD 79
Query: 87 INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV 146
+ V DDVKV+DATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFV
Sbjct: 80 LKVTDDVKVIDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFV 139
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
IP+NGSL AG E+YE+KAK SCMDYGFHMAITK+D+ VS +ME+MVKEKGINSFKFF+AY
Sbjct: 140 IPVNGSLIAGLESYEEKAKKSCMDYGFHMAITKFDDSVSRDMEIMVKEKGINSFKFFLAY 199
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
KGS M+NDELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPL
Sbjct: 200 KGSLMVNDELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPL 259
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326
LEGEAT RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRV+GEPVVSGLVLDDS L
Sbjct: 260 LEGEATARAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSGQRVVGEPVVSGLVLDDSGL 319
Query: 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386
W SDF A+K+VMSPPIRA+GHNK LQ AL+ G+LQLVGTDHC FNSTQKAFGIDDFRKI
Sbjct: 320 WDSDFAIASKFVMSPPIRAAGHNKVLQGALSNGVLQLVGTDHCVFNSTQKAFGIDDFRKI 379
Query: 387 P---NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443
P NGIEERMHLVWDTMVESGQIS+ D+VR+TSTECAR+FN+YPRKGAI+ GSDADIII
Sbjct: 380 PNGVNGIEERMHLVWDTMVESGQISINDFVRVTSTECARVFNIYPRKGAIIAGSDADIII 439
Query: 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503
NPNSSFEI ARSHHSR DTNVYEGRR KGKVEVTIAGGRVVWEN+EL VVPGSGKYIEM
Sbjct: 440 LNPNSSFEINARSHHSRTDTNVYEGRRGKGKVEVTIAGGRVVWENNELKVVPGSGKYIEM 499
Query: 504 RPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 535
PFNYLF G+DKADA Y+SSL APVKR KS+T
Sbjct: 500 PPFNYLFSGIDKADASYISSLNAPVKRSKSTT 531
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493879|ref|XP_003617228.1| Dihydropyrimidinase [Medicago truncatula] gi|355518563|gb|AET00187.1| Dihydropyrimidinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/526 (81%), Positives = 468/526 (88%), Gaps = 9/526 (1%)
Query: 18 LLLLLLYFPPIS---ESNNLFCDAGSEYGGPQCGIQSS---SKILIKGGTVVNAHHQQIA 71
L L++ P S +N FC AG YG CG SS +K+LIKGGTVVNAHHQQIA
Sbjct: 16 LFFLIITITPSSLAQSQHNQFCVAGIGYGESTCGTSSSSSSNKLLIKGGTVVNAHHQQIA 75
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
DVYVEDGI+VAV P I VGDDV V+DATGKFVMPGGIDPHTHL MEFM + +DDFFSGQ
Sbjct: 76 DVYVEDGIIVAVNPTIAVGDDVYVIDATGKFVMPGGIDPHTHLEMEFMNTVAVDDFFSGQ 135
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191
AAALAGGTTMHIDFVIP NGSLTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+M
Sbjct: 136 AAALAGGTTMHIDFVIPTNGSLTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELM 195
Query: 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
VKEKGINSFKFFMAYKGS MI+DELL+EGFK+CKSLGALAMVHAENGDAV+EGQK+MIEL
Sbjct: 196 VKEKGINSFKFFMAYKGSLMISDELLLEGFKKCKSLGALAMVHAENGDAVYEGQKKMIEL 255
Query: 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311
GITGPEGHALSRP +LEGEAT RAIRLA+FVNTPLYVVHVMS+DAMEE+AKARK+GQRVI
Sbjct: 256 GITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEVAKARKSGQRVI 315
Query: 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371
GEPV+SGL LDDSWLWH DF TAAKYVMSPPIR GH+KALQAAL+TG+LQLVGTDHC F
Sbjct: 316 GEPVLSGLALDDSWLWHPDFDTAAKYVMSPPIRKQGHDKALQAALSTGVLQLVGTDHCVF 375
Query: 372 NSTQKAFGIDDFRKIP---NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 428
NSTQKAFGIDDFRKIP NGIEERM +VWD MVESGQISVTDYVRLTSTECARIFN+YP
Sbjct: 376 NSTQKAFGIDDFRKIPNGVNGIEERMRVVWDIMVESGQISVTDYVRLTSTECARIFNIYP 435
Query: 429 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
+KGAIL GSDADIII NPNSSF+ITA+SHHSR+DTNVYEGR+ KGK+EVT+AGGRVVWEN
Sbjct: 436 KKGAILPGSDADIIILNPNSSFDITAKSHHSRVDTNVYEGRKGKGKIEVTVAGGRVVWEN 495
Query: 489 DELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSS 534
+EL VVPGSG+YI+M PF+YLF G+DK DA YL+SLQAPVKR KS+
Sbjct: 496 NELKVVPGSGRYIQMAPFSYLFDGIDKKDAAYLNSLQAPVKRAKST 541
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811343|ref|XP_002873555.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] gi|297319392|gb|EFH49814.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/518 (80%), Positives = 466/518 (89%), Gaps = 4/518 (0%)
Query: 19 LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
L LL P +S+S FC AG EYG CG+ SS++ILIKGG VVNAHHQ++ADVYVEDG
Sbjct: 12 LFLLFPSPSVSDSTTQFCSAGGEYGVGSCGV-SSTRILIKGGIVVNAHHQELADVYVEDG 70
Query: 79 IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71 IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130
Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
TTMHIDFVIPING+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPINGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEILVKEKGIN 190
Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250
Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
HALSRPP+LEGEAT RAIRLA FVNTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFVNTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310
Query: 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378
L+LDD WLW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370
Query: 379 GIDDFRKIPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILV 435
G+DDFRKIPNG+ EERMHL+WDTMV SGQIS TDYVR+TSTE ARIFN+YPRKGAIL
Sbjct: 371 GLDDFRKIPNGVNGLEERMHLIWDTMVGSGQISATDYVRITSTESARIFNIYPRKGAILA 430
Query: 436 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495
GSDADIII NPNSS+EI+++SHHSR DTNVYEGRR KGKVEVTIAGGR+VWEN+EL VVP
Sbjct: 431 GSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVP 490
Query: 496 GSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKS 533
GSGKYIEM PF+YLF G++K+DA YLSSL+APVKR+++
Sbjct: 491 GSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567801|ref|NP_568258.2| pyrimidine 2 [Arabidopsis thaliana] gi|28194047|gb|AAO33381.1|AF465755_1 dihydropyrimidine amidohydrolase [Arabidopsis thaliana] gi|9759387|dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] gi|332004390|gb|AED91773.1| pyrimidine 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/518 (80%), Positives = 466/518 (89%), Gaps = 4/518 (0%)
Query: 19 LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
L LL P SES FC AG E G CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+G
Sbjct: 12 LFLLFPSPSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENG 70
Query: 79 IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71 IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130
Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
TTMHIDFVIP+NG+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGIN 190
Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250
Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
HALSRPP+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310
Query: 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378
L+LDD WLW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370
Query: 379 GIDDFRKIPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILV 435
G+DDFR+IPNG+ EERMHL+WDTMVESGQ+S TDYVR+TSTECARIFN+YPRKGAIL
Sbjct: 371 GLDDFRRIPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARIFNIYPRKGAILA 430
Query: 436 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495
GSDADIII NPNSS+EI+++SHHSR DTNVYEGRR KGKVEVTIAGGR+VWEN+EL VVP
Sbjct: 431 GSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVP 490
Query: 496 GSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKS 533
SGKYIEM PF+YLF G++K+DA YLSSL+APVKR+++
Sbjct: 491 RSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059686|ref|XP_002299970.1| predicted protein [Populus trichocarpa] gi|222847228|gb|EEE84775.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/505 (83%), Positives = 460/505 (91%), Gaps = 4/505 (0%)
Query: 35 FCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV 93
FC+AG Y CGI SSS K+LIKGGTVVNAHHQ+IADVYV+DGI+VAV+PN+ VGDDV
Sbjct: 2 FCEAGIGYDEVGCGISSSSTKLLIKGGTVVNAHHQEIADVYVKDGIIVAVKPNLRVGDDV 61
Query: 94 KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
KV+DATGKFVMPGGIDPHTHLA+E + +E++DDFFSGQAAALAGGTTMHIDFVIP+NGSL
Sbjct: 62 KVIDATGKFVMPGGIDPHTHLAVEALNTESVDDFFSGQAAALAGGTTMHIDFVIPVNGSL 121
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
AG +AYEKKAK SCMDYGFHM ITK+D++VS +ME+MVKEKGINSFKFF+AYKG M+N
Sbjct: 122 IAGLKAYEKKAKKSCMDYGFHMVITKFDDIVSRDMEIMVKEKGINSFKFFLAYKGVLMVN 181
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
DELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPLLEGEAT
Sbjct: 182 DELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPLLEGEATA 241
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333
RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRV+GEPVVSGL LDDS LW SDF T
Sbjct: 242 RAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSGQRVVGEPVVSGLALDDSGLWDSDFTT 301
Query: 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NGI 390
A+KYVMSPPIRASGH KALQ AL+ G+LQLVGTDHC FNSTQKA GIDDFRKIP NGI
Sbjct: 302 ASKYVMSPPIRASGHGKALQDALSNGVLQLVGTDHCVFNSTQKASGIDDFRKIPNGVNGI 361
Query: 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 450
EERMHLVWD MVESGQISVTDYVR+TSTECARIFN+YPRKGAI+ GSDADIII NPNS+F
Sbjct: 362 EERMHLVWDLMVESGQISVTDYVRVTSTECARIFNIYPRKGAIIAGSDADIIILNPNSTF 421
Query: 451 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLF 510
EI ARSHHSR DTNVYEGRR KGKVEVTIAGGRVVWEN+EL VVPGSGKYIEM PF+YLF
Sbjct: 422 EINARSHHSRTDTNVYEGRRGKGKVEVTIAGGRVVWENNELKVVPGSGKYIEMAPFSYLF 481
Query: 511 HGLDKADAKYLSSLQAPVKRLKSST 535
G+D+ADA YLSSL APVKR KS+T
Sbjct: 482 SGIDRADASYLSSLNAPVKRFKSTT 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444857|ref|XP_004140190.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] gi|449480993|ref|XP_004156050.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/521 (80%), Positives = 473/521 (90%), Gaps = 4/521 (0%)
Query: 18 LLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVED 77
L++L+ I+ES+ FCDAG CGI SSSK+LIKGGTVVNAHHQ++ADVYVED
Sbjct: 9 LIILISSLCFIAESDQ-FCDAGIGIDKSTCGITSSSKLLIKGGTVVNAHHQEVADVYVED 67
Query: 78 GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAG 137
GI+VAV+ NI VGDDV V+DATGK+VMPGGIDPHTHLA EFMG+ET+DDFF+GQAAALAG
Sbjct: 68 GIIVAVKRNIKVGDDVAVVDATGKYVMPGGIDPHTHLAFEFMGTETVDDFFTGQAAALAG 127
Query: 138 GTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
GTTMHIDFVIP+NGSL+AGFE+Y KKAK SCMDYGFHMAITKWDEVV+ EME+MVKEKGI
Sbjct: 128 GTTMHIDFVIPVNGSLSAGFESYVKKAKKSCMDYGFHMAITKWDEVVAQEMEIMVKEKGI 187
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257
NSFKFF+AYKG+ MI+DELL++G K+CKSLGALAMVHAENGDAVFEGQ+RMIELGITGPE
Sbjct: 188 NSFKFFLAYKGALMISDELLLQGLKKCKSLGALAMVHAENGDAVFEGQERMIELGITGPE 247
Query: 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317
GHALSRP +LEGEAT+RAIRLA FVNTPLYVVHVMS+DAMEEIAKARKAGQ+VIGEPVVS
Sbjct: 248 GHALSRPAVLEGEATSRAIRLASFVNTPLYVVHVMSIDAMEEIAKARKAGQKVIGEPVVS 307
Query: 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
GLVLD+S LW DFVTAAKYVMSPPIR+SGH+KALQAAL+TG+LQLVGTDHC FNSTQK+
Sbjct: 308 GLVLDESGLWDPDFVTAAKYVMSPPIRSSGHDKALQAALSTGVLQLVGTDHCVFNSTQKS 367
Query: 378 FGIDDFRKIP---NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 434
GIDDFRKIP NGIEERMHLVW+TMVESGQISV DYVR+TSTECARIFN+YP+KGAIL
Sbjct: 368 IGIDDFRKIPNGVNGIEERMHLVWNTMVESGQISVRDYVRITSTECARIFNIYPKKGAIL 427
Query: 435 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494
GSDADIII NPN+SFEI+++ HHSR DTNVYEG++ KGKVEVTI+GG++VWENDEL V+
Sbjct: 428 AGSDADIIILNPNASFEISSKHHHSRTDTNVYEGKKGKGKVEVTISGGKIVWENDELRVI 487
Query: 495 PGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 535
PG+GKYIEM FNYLF G+ KADA+YLSS +APVKR SST
Sbjct: 488 PGAGKYIEMPAFNYLFDGIYKADAQYLSSTRAPVKRFHSST 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554724|ref|XP_003545693.1| PREDICTED: dihydropyrimidinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/506 (83%), Positives = 458/506 (90%), Gaps = 14/506 (2%)
Query: 33 NLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
N FCDAG+ SSK+LIKGGTVVNAHHQQ+ADVYVEDGI+VA+ P I VGD+
Sbjct: 30 NQFCDAGT-----------SSKLLIKGGTVVNAHHQQVADVYVEDGIIVAINPTITVGDE 78
Query: 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
V V+DATGKFVMPGGIDPHTHL EFM +ET+DDFFSGQAAALAGGTTMHIDFVIP GS
Sbjct: 79 VTVIDATGKFVMPGGIDPHTHLEFEFMDTETVDDFFSGQAAALAGGTTMHIDFVIPHKGS 138
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
LTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFFMAYKG+ MI
Sbjct: 139 LTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELMVKEKGINSFKFFMAYKGALMI 198
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
NDELL+EGFK+CKSLGALAMVHAENGDAV+EGQ++MIELGITGPEGHALSRP +LEGEAT
Sbjct: 199 NDELLLEGFKKCKSLGALAMVHAENGDAVYEGQEKMIELGITGPEGHALSRPAVLEGEAT 258
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIGEPV SGL LD+SWLWH DF
Sbjct: 259 ARAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVASGLALDESWLWHPDFE 318
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP---NG 389
TAAKYVMSPPIR GH+KALQAAL+TG+LQLVGTDHCAFNSTQKA GIDDFRKIP NG
Sbjct: 319 TAAKYVMSPPIRKRGHDKALQAALSTGVLQLVGTDHCAFNSTQKALGIDDFRKIPNGVNG 378
Query: 390 IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 449
IEERMHLVWD MVESGQISVTDYVRLTSTECARIFN+YPRKGAIL GSDADIII NPNS+
Sbjct: 379 IEERMHLVWDIMVESGQISVTDYVRLTSTECARIFNIYPRKGAILPGSDADIIILNPNST 438
Query: 450 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYL 509
FEITA+SHHS+LDTNVYEGR KGK+EVTIAGGRVVWEN+EL V PG+G+YI+M PF+YL
Sbjct: 439 FEITAKSHHSKLDTNVYEGRSGKGKIEVTIAGGRVVWENNELKVAPGTGRYIKMPPFSYL 498
Query: 510 FHGLDKADAKYLSSLQAPVKRLKSST 535
F+G+DK DA YL+SLQAPVKR KS+T
Sbjct: 499 FNGIDKKDAFYLNSLQAPVKRAKSNT 524
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493867|ref|XP_003617222.1| Dihydropyrimidinase [Medicago truncatula] gi|355518557|gb|AET00181.1| Dihydropyrimidinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/526 (79%), Positives = 474/526 (90%), Gaps = 9/526 (1%)
Query: 19 LLLLLYFPPISES-----NNLFCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIAD 72
LLL ++F I+ S NN FC+AG E G CG SS+ K+LIKGGTVVNAHHQ +AD
Sbjct: 9 LLLPIFFFLITTSLSQHANNQFCEAGIESGESTCGTSSSTNKLLIKGGTVVNAHHQHVAD 68
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
VYVEDGI+VAVQPNI VGDDV V+DATGKFVMPGGIDPH HL M+ +G+ ++DDFFSGQ+
Sbjct: 69 VYVEDGIIVAVQPNIMVGDDVYVIDATGKFVMPGGIDPHAHLGMDALGTTSVDDFFSGQS 128
Query: 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192
AALAGGTTMHIDFV+PING+LTAGFEAYEKKAKNSCMDYGFH+A+TKWDE VS +ME+MV
Sbjct: 129 AALAGGTTMHIDFVMPINGNLTAGFEAYEKKAKNSCMDYGFHVAVTKWDESVSTDMEIMV 188
Query: 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252
KEKGINSFKFFMAYK M+NDELL++GFK+CKSLGALAMVHAENGDAV+ GQ++MIELG
Sbjct: 189 KEKGINSFKFFMAYKEFIMVNDELLLQGFKKCKSLGALAMVHAENGDAVYAGQQKMIELG 248
Query: 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312
ITGPEGH LSRPP+LEGEAT+RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIG
Sbjct: 249 ITGPEGHPLSRPPMLEGEATSRAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIG 308
Query: 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372
EP+VSGL LDDSWLWH DF TAAKY+MSPPIR+ GH+KALQ+ALATG+LQLVGTDHCA+N
Sbjct: 309 EPIVSGLALDDSWLWHPDFTTAAKYLMSPPIRSKGHDKALQSALATGVLQLVGTDHCAWN 368
Query: 373 STQKAFGIDDFRKI---PNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429
STQKA G+DDFR+I NGIEERMH+VWD MVESGQISVTDYVR+TSTECARIFN+YPR
Sbjct: 369 STQKARGVDDFRQIINGVNGIEERMHVVWDIMVESGQISVTDYVRVTSTECARIFNIYPR 428
Query: 430 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 489
KGAIL GSDADIII NPNSSFEITA+SHHSRLDTNVYEG + KGK+EVTIAGGRVVWEN+
Sbjct: 429 KGAILPGSDADIIILNPNSSFEITAKSHHSRLDTNVYEGWKGKGKIEVTIAGGRVVWENN 488
Query: 490 ELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 535
EL VVPG+G+YI+M PF+YLF GLDK DA YL+SL+APVKR KS+T
Sbjct: 489 ELKVVPGNGRYIQMPPFSYLFDGLDKKDAVYLNSLKAPVKRAKSTT 534
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249144|ref|NP_001239744.1| uncharacterized protein LOC100781590 precursor [Glycine max] gi|255640000|gb|ACU20291.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/538 (78%), Positives = 469/538 (87%), Gaps = 15/538 (2%)
Query: 1 MIHSMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGG 60
M S+ S F H + L + ++ +S+S+ FCDAG+E SSK+LIKGG
Sbjct: 1 MQFSITSQFLHIFS---LTIFIIITSSLSQSSQ-FCDAGTEI--------PSSKLLIKGG 48
Query: 61 TVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
TVVNA H QIADVYVEDGI+VAV PNI VGDDV V+DATGK+VMPGGIDPHTHL M+
Sbjct: 49 TVVNAQHHQIADVYVEDGIIVAVNPNIMVGDDVTVIDATGKYVMPGGIDPHTHLDMDVGF 108
Query: 121 SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW 180
+ T+DDFFSGQAAALAGGTTMHIDFVIP+NGSLTAGFE YEKKAK SCMDYGFHM ITKW
Sbjct: 109 TATVDDFFSGQAAALAGGTTMHIDFVIPLNGSLTAGFEDYEKKAKKSCMDYGFHMVITKW 168
Query: 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240
DE VS EME+MVKEKGINSFKFFMAYKG MINDELL+EGFK+CKSLGA+AMVHAENGDA
Sbjct: 169 DETVSREMELMVKEKGINSFKFFMAYKGILMINDELLLEGFKKCKSLGAVAMVHAENGDA 228
Query: 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEI 300
V+EGQ++MIELGITGPEGHALSRP +LEGEAT RAIRLA+FVNTPLYVVHVMS+DAMEEI
Sbjct: 229 VYEGQRKMIELGITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEI 288
Query: 301 AKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360
AKARKAGQRVIGEP+ SGL LD+SWLWH DF AAKYVMSPPIR GH+KALQAAL+TG+
Sbjct: 289 AKARKAGQRVIGEPIASGLALDESWLWHPDFEIAAKYVMSPPIRKRGHDKALQAALSTGV 348
Query: 361 LQLVGTDHCAFNSTQKAFGIDDFRKIP---NGIEERMHLVWDTMVESGQISVTDYVRLTS 417
LQLVGTDHCAFNSTQKA GIDDFRK+P NGIEERMHLVWD MVESGQISVTDYVR+TS
Sbjct: 349 LQLVGTDHCAFNSTQKARGIDDFRKMPNGVNGIEERMHLVWDIMVESGQISVTDYVRITS 408
Query: 418 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 477
TECA+IFN+YPRKGA+L GSDADIII NPNSSFE++A+SHHSRLDTNVYEGRR KGK+EV
Sbjct: 409 TECAKIFNIYPRKGAVLPGSDADIIILNPNSSFEMSAKSHHSRLDTNVYEGRRGKGKIEV 468
Query: 478 TIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 535
TIAGGRVVWEN+EL V PG+G+YI+M PF+YLF GLDK DA YL+SLQAPVKR K+ST
Sbjct: 469 TIAGGRVVWENNELKVTPGTGRYIQMPPFSYLFDGLDKKDAIYLNSLQAPVKRAKAST 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 535 | ||||||
| TAIR|locus:2177048 | 531 | PYD2 "AT5G12200" [Arabidopsis | 0.947 | 0.954 | 0.788 | 2.3e-222 | |
| DICTYBASE|DDB_G0269246 | 503 | pyd2 "dihydropyrimidinase" [Di | 0.897 | 0.954 | 0.492 | 1.2e-120 | |
| TIGR_CMR|CPS_4055 | 480 | CPS_4055 "D-hydantoinase" [Col | 0.861 | 0.960 | 0.483 | 2e-120 | |
| MGI|MGI:1928679 | 519 | Dpys "dihydropyrimidinase" [Mu | 0.885 | 0.913 | 0.473 | 1.9e-115 | |
| UNIPROTKB|E2RSE5 | 518 | DPYS "Uncharacterized protein" | 0.869 | 0.897 | 0.482 | 3.5e-114 | |
| ZFIN|ZDB-GENE-070508-1 | 500 | dpys "dihydropyrimidinase" [Da | 0.852 | 0.912 | 0.482 | 2.5e-113 | |
| UNIPROTKB|E1BFN6 | 516 | DPYS "Uncharacterized protein" | 0.887 | 0.920 | 0.476 | 5.2e-113 | |
| RGD|68376 | 519 | Dpys "dihydropyrimidinase" [Ra | 0.885 | 0.913 | 0.463 | 2.9e-112 | |
| UNIPROTKB|Q14117 | 519 | DPYS "Dihydropyrimidinase" [Ho | 0.887 | 0.915 | 0.466 | 2.6e-111 | |
| UNIPROTKB|F1S1E7 | 521 | DPYS "Uncharacterized protein" | 0.887 | 0.911 | 0.470 | 4.2e-111 |
| TAIR|locus:2177048 PYD2 "AT5G12200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2147 (760.8 bits), Expect = 2.3e-222, P = 2.3e-222
Identities = 403/511 (78%), Positives = 450/511 (88%)
Query: 26 PPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP 85
P SES FC AG E G CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+GI+VAVQP
Sbjct: 19 PSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENGIIVAVQP 77
Query: 86 NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF 145
NI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDF
Sbjct: 78 NIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDF 137
Query: 146 VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMA 205
VIP+NG+L AGFEAYE K++ SCMDYGFHMAITKW GINSFKFF+A
Sbjct: 138 VIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGINSFKFFLA 197
Query: 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 265
YKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP
Sbjct: 198 YKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 257
Query: 266 LLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSGL+LDD W
Sbjct: 258 VLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSGLILDDHW 317
Query: 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385
LW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA G+DDFR+
Sbjct: 318 LWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKALGLDDFRR 377
Query: 386 IPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 442
IPNG+ EERMHL+WDTMVESGQ+S TDYVR+TSTECARIFN+YPRKGAIL GSDADII
Sbjct: 378 IPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARIFNIYPRKGAILAGSDADII 437
Query: 443 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502
I NPNSS+EI+++SHHSR DTNVYEGRR KGKVEVTIAGGR+VWEN+EL VVP SGKYIE
Sbjct: 438 ILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVPRSGKYIE 497
Query: 503 MRPFNYLFHGLDKADAKYLSSLQAPVKRLKS 533
M PF+YLF G++K+DA YLSSL+APVKR+++
Sbjct: 498 MPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
|
|
| DICTYBASE|DDB_G0269246 pyd2 "dihydropyrimidinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 241/489 (49%), Positives = 319/489 (65%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W G+NSFK FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 243 VYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRP 302
Query: 346 SGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTM 401
K L LA G L VGTD+C F + QKA G DDF KIPNG+ E+RM +VW+
Sbjct: 303 DPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461
V +G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +
Sbjct: 363 VNTGKLTWCQFVRATSSEAARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAV 422
Query: 462 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYL 521
D N++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K
Sbjct: 423 DFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVR 481
Query: 522 SSLQAPVKR 530
+ L V R
Sbjct: 482 NELLRKVDR 490
|
|
| TIGR_CMR|CPS_4055 CPS_4055 "D-hydantoinase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 225/465 (48%), Positives = 312/465 (67%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+I+GGTVV A ADVY ++G +VA+ N++V ++ + +DATG++++PGGIDPHTH+
Sbjct: 3 IIIRGGTVVTADMTFAADVYCDEGKIVAIGDNLDVPENAECIDATGQYIIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ DDF++G AA LAGGTT IDFVIP G SL F ++ A S DY F
Sbjct: 63 QLPFMGTVASDDFYTGTAAGLAGGTTTIIDFVIPAPGQSLIEAFHQWQDWASKSAADYSF 122
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W G+NSFK FMAYK + M +DE L++ F+R LGA+ V
Sbjct: 123 HVAITWWDDSVYEDMGTLVNEYGVNSFKHFMAYKNAIMADDETLVKSFRRSMDLGAIPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ VF+ Q+ M+ GITGPEGH LSRPP +EGEA RAIR+AE +N P+YVVHV
Sbjct: 183 HAENGELVFQLQQEMLSQGITGPEGHPLSRPPAVEGEAANRAIRIAEVMNVPIYVVHVSC 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+++E I +AR GQ V GE + L++DDS H + AA +VMSPP R+ H AL
Sbjct: 243 KESLEAITRARNEGQLVYGEVLAGHLLVDDSVYRHPNSEFAAAHVMSPPFRSKDHQAALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG---IEERMHLVWDTMVESGQISVT 410
L +G LQ TDHC F + QKA G DDF KIPNG +E+R+ ++WD V +G++++
Sbjct: 303 KGLQSGNLQTTATDHCCFCADQKAAGKDDFTKIPNGTAGVEDRLAVLWDAGVNTGRLTIN 362
Query: 411 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 470
++V TST A+IFN+YPRKG++ VG+DAD+++++P + I+A++HH +D N++EGR
Sbjct: 363 EFVAATSTNAAKIFNLYPRKGSVSVGADADLVVWDPKGTRTISAKTHHQNIDFNIFEGRT 422
Query: 471 VKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDK 515
V G TI+ G++VW N LN V G+G+Y+E PFN +F L K
Sbjct: 423 VTGIPSHTISRGKLVWANGVLNAVRGAGQYVERPPFNPMFDALTK 467
|
|
| MGI|MGI:1928679 Dpys "dihydropyrimidinase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 231/488 (47%), Positives = 309/488 (63%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
++LI+GG +VN Q+ADV VEDG+V A+ ++ +D +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF+ G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYKG +M+ DE L F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + +A AR+AG V GEP+ +GL D W ++ AA +VM PP+R
Sbjct: 246 VVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTDGRQYWSEEWSHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVE 403
L LA G L G+D+C FN+ QKA G DDF KIPNG+ E+RM ++W+ V
Sbjct: 306 LTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRRISAKTHHQAVNF 425
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 522
N++EG G VTI+ GRVV+E NV G GK+I +PF Y++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFNVTAGHGKFIPRQPFAEYIYKRIKQRDQ---T 482
Query: 523 SLQAPVKR 530
PVKR
Sbjct: 483 CTPVPVKR 490
|
|
| UNIPROTKB|E2RSE5 DPYS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 229/475 (48%), Positives = 302/475 (63%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGID 109
S++LI+GG VVNA Q ADV VEDG + A+ ++ ++VLDA+GK V+PGGID
Sbjct: 5 SRLLIRGGRVVNADLSQAADVLVEDGPMRALGRHLLPPGGAAGLRVLDASGKLVLPGGID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS- 167
HTH+ FMGS ++DDF G AALAGGTTM IDF IP G SL FE + A
Sbjct: 65 THTHMQFPFMGSRSVDDFLQGTQAALAGGTTMIIDFAIPQKGGSLIQAFETWRSWADPKV 124
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYK +M+ DE L F +CK +
Sbjct: 125 CCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDLYMVRDEELYAAFSQCKEI 184
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A+VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 185 GAIALVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 244
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + IA AR+ G+ V GEP+ + L D + WH ++ AA +VM PP+R
Sbjct: 245 VVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWHKEWHHAAHHVMGPPLRPDP 304
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVE 403
L LA G L GTDHC FN+ QKA G DDF KIPNG+ E+RM ++W+ V
Sbjct: 305 STPDFLMNLLANGDLTTTGTDHCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 364
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
SG++ +V +TST A++FN+YPRKG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 365 SGKMDENRFVAVTSTNAAKVFNLYPRKGRIAVGSDADIVIWDPKATRTISAKTHHQAVNF 424
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 517
N++EG G VTI+ G+VV+E NV G GK+I +PF Y++ + + D
Sbjct: 425 NIFEGMVCHGVPVVTISRGKVVYEAGVFNVTAGDGKFIPRKPFAEYIYKRIKQRD 479
|
|
| ZFIN|ZDB-GENE-070508-1 dpys "dihydropyrimidinase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
Identities = 223/462 (48%), Positives = 294/462 (63%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ S ILIKGG VVN +ADVY+EDG++ V ++ V +V+DAT K V+PGGID
Sbjct: 3 AQSCILIKGGKVVNEDFSVMADVYIEDGVISGVGTDLQVAAGTRVIDATHKLVLPGGIDS 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-C 168
HTH+ + FMG+ T DDF +G AA+AGGTTM +DFVI G SL +E + + A C
Sbjct: 63 HTHMELSFMGTTTADDFQTGTQAAVAGGTTMILDFVIAQKGCSLLEAYERWRRTADPKVC 122
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY HMA+T W GINSFK FMAYK +M+ D L F CK +G
Sbjct: 123 CDYSLHMAVTWWDDTVKKEMETLVSEKGINSFKMFMAYKDLYMLQDLELYAVFSTCKEIG 182
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + EG KRM+ LGITGPEGH + RP +E EAT RAI +A N PLYV
Sbjct: 183 AIAQVHAENGDLIAEGAKRMLSLGITGPEGHEMCRPEEVEAEATQRAITIAHATNCPLYV 242
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHVMS A + +A AR+ G+ V GEP+ +GL D + WH ++ AA +VM PP+R
Sbjct: 243 VHVMSKSAAKVVANARRNGRLVFGEPIAAGLGTDGTHYWHENWAHAAGFVMGPPLRPDPS 302
Query: 349 NKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVES 404
L LA L + GTD+C F+ QKA G DDF KIPNG+ E+RM ++W+ V S
Sbjct: 303 TPGYLMDLLANDDLSVTGTDNCTFSVCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHS 362
Query: 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 464
G++ +V +TST A+IFN+YPRKG I GSDAD++I++P +S I+A++HH +D N
Sbjct: 363 GKMDENRFVAVTSTNAAKIFNLYPRKGRIAKGSDADLVIWDPKASRVISAKTHHQAVDYN 422
Query: 465 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 506
++EG G VTI+ G+VV+EN +L PG G+YI +PF
Sbjct: 423 IFEGMLCHGVPVVTISRGKVVYENGKLFTKPGEGRYIPRKPF 464
|
|
| UNIPROTKB|E1BFN6 DPYS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 233/489 (47%), Positives = 308/489 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGD---DVKVLDATGKFVMPGGI 108
S +LI+GG VVN Q ADV VEDG+V AV ++ GD ++VLDA GK V+PGGI
Sbjct: 5 SLLLIRGGCVVNDDSSQEADVLVEDGVVQAVGRHVLPPGDAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS ++DDF G AALAGGTTM +DF IP G SL F+ + A
Sbjct: 65 DTHTHMQFPFMGSRSVDDFHLGTKAALAGGTTMIMDFAIPHKGHSLIEAFDTWRSWADPQ 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L E F RCK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDVYMVRDVELYEAFSRCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD V EG K+M+ LGITGPEGH LSRP +E EAT RA+ +A VN PL
Sbjct: 185 IGAIAQVHAENGDLVAEGAKKMLALGITGPEGHELSRPEAVEAEATLRAVTIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
YVVHVMS A + +A AR+ G+ V GEP+ +GL D + W +++ AA +VM PP+R
Sbjct: 245 YVVHVMSKSAAKVVADARRDGKVVYGEPIAAGLGTDGTHHWDREWLHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMV 402
L LA L G+D+C FNS QKA G DDF KIPNG+ E+RM ++W+ V
Sbjct: 305 PSTPDFLMNLLANDDLTTTGSDNCTFNSCQKALGKDDFTKIPNGVNGVEDRMSIIWEKGV 364
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKATRTISAKTHHQAVN 424
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYL 521
N++EG G VTI+ G+VV+E +V G GK+I +PF Y++ + + D
Sbjct: 425 FNIFEGMVCHGVPVVTISRGKVVYEAGVFSVSAGDGKFIPRKPFAEYIYKRIKQRDQ--- 481
Query: 522 SSLQAPVKR 530
+ + PVKR
Sbjct: 482 TCIPTPVKR 490
|
|
| RGD|68376 Dpys "dihydropyrimidinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
Identities = 226/488 (46%), Positives = 309/488 (63%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGDD---VKVLDATGKFVMPGGID 109
++LI+GG VVN Q+ADV VEDG+V A+ ++ GD +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYK +M+ D+ + F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
+VHVMS A + IA A++ G+ V GEP+ +GL D + W+ ++ AA +VM PP+R
Sbjct: 246 IVHVMSKSAAKVIADAKREGKVVYGEPIAAGLGTDGTQYWNKEWRHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVE 403
L LA G L G+D+C FN+ QKA G DDF KIPNG+ E+RM ++W+ V
Sbjct: 306 STPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRTISAKTHHQAVNF 425
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 522
N++EG G VTI+ GRVV+E +V G GK+I +PF +++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFDVTAGHGKFIPRQPFAEFIYKRVKQRDQ---T 482
Query: 523 SLQAPVKR 530
PVKR
Sbjct: 483 CTPIPVKR 490
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| UNIPROTKB|Q14117 DPYS "Dihydropyrimidinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 228/489 (46%), Positives = 304/489 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
S++LI+GG VVN ++ADV VEDG+V A+ ++ ++VLDA GK V+PGGI
Sbjct: 5 SRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE + A
Sbjct: 65 DTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPK 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L E F RCK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PL
Sbjct: 185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
Y+VHVMS A + IA AR+ G+ V GEP+ + L D + W+ ++ AA +VM PP+R
Sbjct: 245 YIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMV 402
L LA L GTD+C FN+ QKA G DDF KIPNG+ E+RM ++W+ V
Sbjct: 305 PSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGV 364
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P + I+A++HH ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHHQAVN 424
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYL 521
N++EG G VTI+ G+VV+E +V G GK+I +PF Y++ + + D
Sbjct: 425 FNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRDR--- 481
Query: 522 SSLQAPVKR 530
+ PV+R
Sbjct: 482 TCTPTPVER 490
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| UNIPROTKB|F1S1E7 DPYS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
Identities = 231/491 (47%), Positives = 304/491 (61%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
S++LI+GG VVN Q+ADV VEDG+V A+ ++ ++VLDA GK V+PGGI
Sbjct: 5 SRLLIRGGRVVNDDSSQVADVLVEDGVVRALGRDLLPPGGAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS ++DDF G AALAGGTTM IDF IP G SL FE + A +
Sbjct: 65 DTHTHMQFPFMGSRSVDDFHQGTKAALAGGTTMIIDFAIPHKGHSLVEAFETWRSWADSK 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L F CK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILTQEKGVNSFKMFMAYKDLYMLRDVELYTVFSWCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PL
Sbjct: 185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
YVVHVMS A IA AR+ G+ V GEP+ +GL D + W+ D+ AA +VM PP+R
Sbjct: 245 YVVHVMSKSAARVIADARRDGKVVYGEPIAAGLGTDGTHYWNRDWHHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMV 402
L LA L G+DHC FN+ QKA G DDF KIPNG+ E+RM ++W+ V
Sbjct: 305 PSTPDFLLNLLANDDLTTTGSDHCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKAV 364
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE--ITARSHHSR 460
SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P ++ I+A++HH
Sbjct: 365 HSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKATRNRTISAKTHHQA 424
Query: 461 LDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAK 519
++ N++EG G VTI+ GRVV+E V G GK+I +PF +Y++ + + D
Sbjct: 425 VNFNIFEGMVCHGVPLVTISRGRVVYEAGVFTVTAGHGKFIPRKPFADYIYKRIKQRDE- 483
Query: 520 YLSSLQAPVKR 530
+ PV+R
Sbjct: 484 --TCAPTPVER 492
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q55DL0 | DPYS_DICDI | 3, ., 5, ., 2, ., 2 | 0.5112 | 0.8971 | 0.9542 | yes | no |
| B1XEG2 | PHYDA_ECODH | 3, ., 5, ., 2, ., - | 0.3470 | 0.8355 | 0.9696 | yes | no |
| B7N7B8 | PHYDA_ECOLU | 3, ., 5, ., 2, ., - | 0.3470 | 0.8355 | 0.9696 | yes | no |
| Q8VTT5 | HYDA_BURPI | 3, ., 5, ., 2, ., - | 0.3834 | 0.8373 | 0.9803 | yes | no |
| Q63150 | DPYS_RAT | 3, ., 5, ., 2, ., 2 | 0.4692 | 0.8859 | 0.9132 | yes | no |
| O69809 | HYDA_STRCO | 3, ., 5, ., 2, ., - | 0.4123 | 0.8504 | 0.9743 | yes | no |
| B7NW14 | PHYDA_ECO7I | 3, ., 5, ., 2, ., - | 0.3514 | 0.8355 | 0.9696 | yes | no |
| A7ZQY1 | PHYDA_ECO24 | 3, ., 5, ., 2, ., - | 0.3492 | 0.8355 | 0.9696 | yes | no |
| B1ITC8 | PHYDA_ECOLC | 3, ., 5, ., 2, ., - | 0.3492 | 0.8355 | 0.9696 | yes | no |
| Q31WE3 | PHYDA_SHIBS | 3, ., 5, ., 2, ., - | 0.3492 | 0.8355 | 0.9696 | yes | no |
| Q9I676 | HYDA_PSEAE | 3, ., 5, ., 2, ., 2 | 0.4903 | 0.8616 | 0.9624 | yes | no |
| Q14117 | DPYS_HUMAN | 3, ., 5, ., 2, ., 2 | 0.4746 | 0.8953 | 0.9229 | yes | no |
| B7LYD8 | PHYDA_ECO8A | 3, ., 5, ., 2, ., - | 0.3492 | 0.8355 | 0.9696 | yes | no |
| Q21773 | DHP1_CAEEL | 3, ., 5, ., 2, ., 2 | 0.4788 | 0.8598 | 0.9406 | yes | no |
| Q1R7F8 | PHYDA_ECOUT | 3, ., 5, ., 2, ., - | 0.3449 | 0.8355 | 0.9696 | yes | no |
| Q9EQF5 | DPYS_MOUSE | 3, ., 5, ., 2, ., 2 | 0.4815 | 0.8859 | 0.9132 | yes | no |
| A8A415 | PHYDA_ECOHS | 3, ., 5, ., 2, ., - | 0.3470 | 0.8355 | 0.9696 | yes | no |
| Q59699 | HYDA_PSEPU | 3, ., 5, ., 2, ., 2 | 0.5045 | 0.8074 | 0.8727 | yes | no |
| C5A0E6 | PHYDA_ECOBW | 3, ., 5, ., 2, ., - | 0.3470 | 0.8355 | 0.9696 | yes | no |
| B7LF59 | PHYDA_ECO55 | 3, ., 5, ., 2, ., - | 0.3492 | 0.8355 | 0.9696 | yes | no |
| B6I707 | PHYDA_ECOSE | 3, ., 5, ., 2, ., - | 0.3492 | 0.8355 | 0.9696 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.2 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_IX3131 | dihydropyrimidinase (EC-3.5.2.2) (532 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.122.159.1 | oxidoreductase, acting on the CH-CH group of donors (EC-3.5.2.2) (381 aa) | • | • | • | • | 0.962 | ||||
 | estExt_fgenesh4_pg.C_LG_VII0287 | beta-ureidopropionase (EC-3.5.1.6) (418 aa) | • | • | • | • | 0.949 | ||||
 | eugene3.184790001 | Predicted protein (293 aa) | • | • | • | • | 0.715 | ||||
 | gw1.XII.278.1 | annotation not avaliable (332 aa) | • | • | 0.531 | ||||||
 | fgenesh4_pg.C_LG_X000698 | hypothetical protein (442 aa) | • | • | • | 0.524 | |||||
 | fgenesh4_pg.C_scaffold_13902000001 | Predicted protein (319 aa) | • | • | 0.511 | ||||||
 | eugene3.00280262 | hypothetical protein (508 aa) | • | 0.480 | |||||||
 | grail3.2787000101 | Predicted protein (56 aa) | • | 0.423 | |||||||
 | gw1.2282.2.1 | Predicted protein (376 aa) | • | 0.403 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 535 | |||
| PLN02942 | 486 | PLN02942, PLN02942, dihydropyrimidinase | 0.0 | |
| cd01314 | 447 | cd01314, D-HYD, D-hydantoinases (D-HYD) also calle | 0.0 | |
| TIGR02033 | 454 | TIGR02033, D-hydantoinase, D-hydantoinase | 0.0 | |
| PRK08323 | 459 | PRK08323, PRK08323, phenylhydantoinase; Validated | 0.0 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 1e-118 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 1e-109 | |
| cd01315 | 447 | cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A | 6e-72 | |
| cd01302 | 337 | cd01302, Cyclic_amidohydrolases, Cyclic amidohydro | 6e-68 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 4e-60 | |
| PRK06189 | 451 | PRK06189, PRK06189, allantoinase; Provisional | 3e-52 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 2e-50 | |
| cd01317 | 374 | cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg | 7e-48 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 2e-47 | |
| PRK08044 | 449 | PRK08044, PRK08044, allantoinase; Provisional | 6e-45 | |
| cd01318 | 361 | cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg | 1e-44 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 6e-39 | |
| PRK07575 | 438 | PRK07575, PRK07575, dihydroorotase; Provisional | 5e-35 | |
| PRK09060 | 444 | PRK09060, PRK09060, dihydroorotase; Validated | 1e-32 | |
| PLN02795 | 505 | PLN02795, PLN02795, allantoinase | 7e-32 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 1e-31 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 4e-28 | |
| PRK08417 | 386 | PRK08417, PRK08417, dihydroorotase; Provisional | 7e-26 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 4e-16 | |
| PRK01211 | 409 | PRK01211, PRK01211, dihydroorotase; Provisional | 1e-14 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 9e-13 | |
| PRK09237 | 380 | PRK09237, PRK09237, dihydroorotase; Provisional | 4e-12 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 8e-12 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 2e-11 | |
| TIGR03121 | 556 | TIGR03121, one_C_dehyd_A, formylmethanofuran dehyd | 2e-11 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 6e-11 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 4e-10 | |
| cd01304 | 541 | cd01304, FMDH_A, Formylmethanofuran dehydrogenase | 6e-10 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 3e-09 | |
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 6e-09 | |
| COG1229 | 575 | COG1229, FwdA, Formylmethanofuran dehydrogenase su | 9e-09 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 9e-09 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 1e-08 | |
| PRK00369 | 392 | PRK00369, pyrC, dihydroorotase; Provisional | 1e-08 | |
| PRK08393 | 424 | PRK08393, PRK08393, N-ethylammeline chlorohydrolas | 2e-08 | |
| PRK07228 | 445 | PRK07228, PRK07228, N-ethylammeline chlorohydrolas | 4e-08 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 4e-08 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 5e-08 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 7e-08 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 4e-07 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 6e-07 | |
| PRK06038 | 430 | PRK06038, PRK06038, N-ethylammeline chlorohydrolas | 1e-06 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 1e-06 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 1e-06 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 1e-06 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 2e-06 | |
| cd01293 | 398 | cd01293, Bact_CD, Bacterial cytosine deaminase and | 5e-06 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 6e-06 | |
| cd01316 | 344 | cd01316, CAD_DHOase, The eukaryotic CAD protein is | 6e-06 | |
| cd01307 | 338 | cd01307, Met_dep_hydrolase_B, Metallo-dependent hy | 7e-06 | |
| TIGR00221 | 380 | TIGR00221, nagA, N-acetylglucosamine-6-phosphate d | 2e-05 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 2e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 2e-05 | |
| PRK09061 | 509 | PRK09061, PRK09061, D-glutamate deacylase; Validat | 4e-05 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 6e-05 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 9e-05 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 9e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 1e-04 | |
| PRK07203 | 442 | PRK07203, PRK07203, putative chlorohydrolase/amino | 1e-04 | |
| TIGR01178 | 552 | TIGR01178, ade, adenine deaminase | 1e-04 | |
| COG3964 | 386 | COG3964, COG3964, Predicted amidohydrolase [Genera | 3e-04 | |
| PRK15446 | 383 | PRK15446, PRK15446, phosphonate metabolism protein | 4e-04 | |
| cd01308 | 387 | cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe | 4e-04 | |
| PRK08203 | 451 | PRK08203, PRK08203, hydroxydechloroatrazine ethyla | 0.001 | |
| PRK07572 | 426 | PRK07572, PRK07572, cytosine deaminase; Validated | 0.001 | |
| PRK05985 | 391 | PRK05985, PRK05985, cytosine deaminase; Provisiona | 0.002 | |
| PRK06380 | 418 | PRK06380, PRK06380, metal-dependent hydrolase; Pro | 0.002 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 0.002 | |
| PRK07583 | 438 | PRK07583, PRK07583, cytosine deaminase-like protei | 0.002 | |
| pfam04909 | 272 | pfam04909, Amidohydro_2, Amidohydrolase | 0.002 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 0.003 | |
| PRK12394 | 379 | PRK12394, PRK12394, putative metallo-dependent hyd | 0.003 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 0.004 | |
| cd01308 | 387 | cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe | 0.004 | |
| COG3653 | 579 | COG3653, COG3653, N-acyl-D-aspartate/D-glutamate d | 0.004 |
| >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase | Back alignment and domain information |
|---|
Score = 956 bits (2472), Expect = 0.0
Identities = 408/483 (84%), Positives = 446/483 (92%), Gaps = 3/483 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
SS+KILIKGGTVVNAHHQ++ADVYVEDGI+VAV PN+ V DDV+V+DATGKFVMPGGIDP
Sbjct: 3 SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDP 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170
HTHLAM FMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+NG+L AG+EAYEKKA+ SCMD
Sbjct: 63 HTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMD 122
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
YGFHMAITKWD+ VS +ME +VKEKGINSFKFFMAYKGS M+ DELL+EGFKRCKSLGAL
Sbjct: 123 YGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGAL 182
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT RAIRLA+FVNTPLYVVH
Sbjct: 183 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVH 242
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350
VMS+DAMEEIA+ARK+GQRVIGEPVVSGLVLDDS LW DF A+KYVMSPPIR +GH K
Sbjct: 243 VMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGK 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQI 407
ALQAAL++GILQLVGTDHC FNSTQKAFG DDFRKIPN GIEERMHLVWDTMVESGQI
Sbjct: 303 ALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQI 362
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
S TDYVR+TSTECA+IFN+YPRKGAIL GSDADIII NPNS+F I+A++HHSR+DTNVYE
Sbjct: 363 SPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVYE 422
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAP 527
GRR KGKVEVTI+ GRVVWEN EL VV GSG+YIEM PF+YLF G+ KADA YLSSL+AP
Sbjct: 423 GRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEMPPFSYLFDGIQKADAAYLSSLRAP 482
Query: 528 VKR 530
VKR
Sbjct: 483 VKR 485
|
Length = 486 |
| >gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Score = 692 bits (1788), Expect = 0.0
Identities = 243/449 (54%), Positives = 306/449 (68%), Gaps = 7/449 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GT+V A AD+ +EDG +VA+ PN+ V+V+DATGK+V+PGGIDPHTHL
Sbjct: 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
+ FMG+ T DDF SG AA AGGTT IDF IP G SL E + KA S +DYG
Sbjct: 61 ELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W + V +E+ +VK KGI+SFK FMAYKG M++DE L++ KR K LGAL M
Sbjct: 121 FHMIITDWTDSVIEELPELVK-KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVM 179
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E QK+++ G TGPE HALSRPP +E EAT RAIRLAE PLY+VHV
Sbjct: 180 VHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
S +A +EIA+ARK G V GE L+LDDS W D+ AKYV SPP+R +AL
Sbjct: 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWK-DWFEGAKYVCSPPLRPKEDQEAL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG---IEERMHLVWDTMVESGQISV 409
L++G LQ VG+DHC FN QKA G DDF KIPNG +E RM L+W V G+I++
Sbjct: 299 WDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITL 358
Query: 410 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 469
+V LTST A+IF +YPRKG I VGSDAD++I++PN+ I+A +HH +D N++EG
Sbjct: 359 EKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFEGM 418
Query: 470 RVKGKVEVTIAGGRVVWENDELNVVPGSG 498
+VKG VTI+ G+VV E+ EL GSG
Sbjct: 419 KVKGWPVVTISRGKVVVEDGELVGEKGSG 447
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447 |
| >gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase | Back alignment and domain information |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 239/453 (52%), Positives = 301/453 (66%), Gaps = 7/453 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LI+GGTVVNA ADV +E G +VAV N+ D V+V+DATGK+V+PGGID HTHL
Sbjct: 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVEVIDATGKYVLPGGIDVHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
M F G+ T DDFF+G AA AGGTT IDF +P G SLT E + +KA S +DYG
Sbjct: 61 EMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEKAEGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W++ V +E V E+GI SFK FMAYK M++DE L E KR K LGAL
Sbjct: 121 FHMMITDWNDHVLEEHIPEVVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQ 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E Q R++ G TGPE HALSRPP E EA RAI LA + PLYVVHV
Sbjct: 181 VHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALADAPLYVVHVS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
+ DA++EIA+AR+ GQ V GE LVLDD+ F AKYV SPP+R AL
Sbjct: 241 TADAVDEIAEAREKGQPVYGETCPQYLVLDDTAYDKPGF-EGAKYVCSPPLREKEDQDAL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQK-AFGIDDFRKIPNG---IEERMHLVWDTMVESGQIS 408
+AL++G LQ VG+DHC FN QK A G DDF KIPNG +EERM L++D V G+I+
Sbjct: 300 WSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVAKGRIT 359
Query: 409 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEG 468
+ +V LTST A+IFN+YP+KG I VGSDADI+I++PN + I+A +HH D N +EG
Sbjct: 360 LEKFVELTSTNPAKIFNMYPQKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYNPFEG 419
Query: 469 RRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 501
+V+G V ++ GRVV E+ + G+G+++
Sbjct: 420 FKVQGAVVSVLSRGRVVVEDGQFVGTAGAGRFV 452
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 |
| >gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Score = 619 bits (1598), Expect = 0.0
Identities = 230/463 (49%), Positives = 296/463 (63%), Gaps = 11/463 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
LIK GTVV A ADV +EDG + A+ N +V+DATGK+VMPGGIDPHTH
Sbjct: 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ M F G+ + DDF +G AA GGTT IDF + G SL EA+ KA + +DY
Sbjct: 58 MEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFHM IT W+EVV DEM +V+E GI SFK FMAYKG+ M++D+ L+ +R LGAL
Sbjct: 118 GFHMIITDWNEVVLDEMPELVEE-GITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA+ Q +++ G TGPE HALSRPP +EGEAT RAI LAE PLY+VHV
Sbjct: 177 MVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+A+E I +AR GQRV GE L+LD+S D+ AKYVMSPP+R H A
Sbjct: 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDA 296
Query: 352 LQAALATGILQLVGTDHCAFNSTQKAF-GIDDFRKIPNG---IEERMHLVWDTMVESGQI 407
L L G LQ+V TDHC F QK G DF KIPNG +E+RM L++ V +G+I
Sbjct: 297 LWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRI 356
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
++ +V LTST A+IF +YPRKG I VG+DADI+I++PN++ I+A + HS +D N YE
Sbjct: 357 TLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTLHSNVDYNPYE 416
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLF 510
G V G T++ G VV E+ E G G++++ +PF +
Sbjct: 417 GFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKRKPFQAVV 459
|
Length = 459 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 355 bits (913), Expect = e-118
Identities = 168/458 (36%), Positives = 248/458 (54%), Gaps = 17/458 (3%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
I+GGTVV A AD+ + G + A+ + G + +DATG+ V+PGG+D H H+
Sbjct: 8 IRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGA--REIDATGRLVLPGGVDSHCHIDQ 65
Query: 117 EF-MGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYGF 173
G DDF++G +A GGTT I F G SL E Y ++A + DY F
Sbjct: 66 PSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAF 125
Query: 174 HMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
H+ + EV+++E+ ++ + G SFK FM Y ++D +++ + GA+ M
Sbjct: 126 HLIVADPTEEVLTEELPALIAQ-GYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVM 183
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAEN D + KR++ G+T P+ HA+SRP L E EAT RAI LAE V+ P+ +VHV
Sbjct: 184 VHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVS 243
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
+A E+I +AR G ++ E L L L + AKY+ SPP R + +A+
Sbjct: 244 GREAAEQIRRARGRGLKIFAETCPQYLFLTAEDL-DRPGMEGAKYICSPPPRDKANQEAI 302
Query: 353 QAALATGILQLVGTDHCAFN---STQKAFGIDD--FRKIPNGI---EERMHLVWDTMVES 404
LA G ++ +DH F + K + F+ I NGI E R+ L++ V
Sbjct: 303 WNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVK 362
Query: 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 464
G+IS+ +V LTST A+++ +YPRKGAI +G+DADI I++P+ IT H D
Sbjct: 363 GRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYT 422
Query: 465 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502
YEG RV G ++ GRVV E+ EL GSG+++
Sbjct: 423 PYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLA 460
|
Length = 477 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 333 bits (855), Expect = e-109
Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 28/449 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK VV+ ++AD+ ++DG + A+ N+ +++DA G V+PG +D H H
Sbjct: 3 LLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHF 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMD 170
E + F +G AA AGG T +D P EA E K S +D
Sbjct: 63 REPGF--EHKETFETGSRAAAAGGVTTVVDM--PNTKPPIDTAEALEDKLERAKGKSVVD 118
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
Y F+ +TK + + E V FK FM + ++D++L E + LGAL
Sbjct: 119 YAFYGGLTKGNLGKLELTERGV----EAGFKGFMDD-STGALDDDVLEEALEYAAELGAL 173
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
+VHAE+ D + EG G+ PE RPP+ E A R + LA +++ H
Sbjct: 174 ILVHAEDDDLIAEGVMN---EGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICH 230
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350
+ + +++E I A+ G RV E L+LD+ ++PP+R +
Sbjct: 231 ISTKESVELIRAAKAEGIRVTAEVTPHHLLLDE----EDIEDLGTLAKVNPPLRDEEDRE 286
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVESGQI 407
AL AL G++ ++ +DH +K F + P+GI E + L+ T+V+ G++
Sbjct: 287 ALWEALKDGVIDVIASDHAPHTLEEKR---LPFEEAPSGIPGLETALPLLL-TLVKKGRL 342
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
S+ V L ST ARIF + P KGAI G+DAD+++ +P+ + I A +S+ + +E
Sbjct: 343 SLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFE 401
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPG 496
G +KG+V TI G+VV+E+ E+ PG
Sbjct: 402 GFELKGRVVATILRGKVVYEDGEVIAKPG 430
|
Length = 430 |
| >gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 6e-72
Identities = 140/464 (30%), Positives = 213/464 (45%), Gaps = 38/464 (8%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+IK G VV + AD+ V+ G + A+ P+I + +V+DA G VMPG ID H H+
Sbjct: 3 VIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHIN 62
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNS 167
G + F +G AA AGG T ID +P+N +L A EA + K
Sbjct: 63 E--PGRTEWEGFETGTKAAAAGGITTIID--MPLNSIPPTTTVENLEAKLEAAQGKLH-- 116
Query: 168 CMDYGFHMAITKWDEVVS---DEMEVMVKEKGINSFKFFMAYKG--SF-MINDELLIEGF 221
+D GF W +V D++ + E G+ FK F+ G F ++DE L E
Sbjct: 117 -VDVGF------WGGLVPGNLDQLRPLD-EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAM 168
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
K G++ VHAEN + Q++ G + SRP E EA R + LA+
Sbjct: 169 KELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKE 228
Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV-MS 340
L++VH+ S +A+ I +AR G V E L D +
Sbjct: 229 TGCRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFT-----AEDVPDGGTEFKCA 283
Query: 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLV 397
PPIR + + + L AL G + +V +DH K G DF K GI + + ++
Sbjct: 284 PPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVM 343
Query: 398 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSH 457
V +S+ D RL A++F + +KG I VG DAD ++++P F + A
Sbjct: 344 LTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDL 403
Query: 458 HSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 501
+ + + Y GR +KG+V TI G VV+++ E+ P G+ +
Sbjct: 404 YYKNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEP-LGQLL 446
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447 |
| >gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 6e-68
Identities = 116/384 (30%), Positives = 167/384 (43%), Gaps = 53/384 (13%)
Query: 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI--PINGSLTAGFE 158
V+PG ID H HL + G+ +DF SG AA AGG T ID P L A
Sbjct: 1 LLVLPGFIDIHVHL-RDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIEL 59
Query: 159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDEL 216
+ ++S +D+ FH I V+DE++ + + GINS K FM Y + +D
Sbjct: 60 KIKLAEESSYVDFSFHAGI--GPGDVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGT 116
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
L+ F S G MVHAE RA
Sbjct: 117 LMRTFLEIASRGGPVMVHAE-------------------------------------RAA 139
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336
+LAE +++ HV S +A+E I A+ G +V E L LD+S L + A
Sbjct: 140 QLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLN----GAW 195
Query: 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIE--ERM 394
++PP+R+ +AL + G + + +DH + +K G D K P G E
Sbjct: 196 GKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETR 254
Query: 395 HLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITA 454
+ T +S+ V + S ARIF +YP KG I VG DAD++I +P +++TA
Sbjct: 255 LPILLTEGVKRGLSLETLVEILSENPARIFGLYP-KGTIAVGYDADLVIVDPKKEWKVTA 313
Query: 455 RSHHSRLDTNVYEGRRVKGKVEVT 478
S+ D +EG V GK T
Sbjct: 314 EEIESKADWTPFEGMEVTGKPVST 337
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 4e-60
Identities = 134/461 (29%), Positives = 220/461 (47%), Gaps = 32/461 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG V+ + ++ ADV V+ G + A+ P +G K++DA G V PG +D H H+
Sbjct: 2 LIIRGGRVILPNGEREADVGVKGGKIAAIGP-DILGPAAKIIDAGGLVVFPGVVDTHVHI 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK----NSCM 169
G + F +G AA AGG T +ID +P+N T + E K + +
Sbjct: 61 NEP--GRTEWEGFETGTRAAAAGGITTYID--MPLNSIPATTTRASLEAKFEAAKGKLAV 116
Query: 170 DYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMAYKGS--FM-INDELLIEGFKRC 224
D GF W +V ++ + + E G+ FK F++ G F ++D L +G +
Sbjct: 117 DVGF------WGGLVPYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMREL 170
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG L +VHAEN + G G + + SRP E EA R + LA+
Sbjct: 171 ARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGC 230
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
++VVH+ S +A+E I +A++ G V E L L + D T AK +PPIR
Sbjct: 231 RVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEV--PDGGTLAK--CAPPIR 286
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTM 401
+ + L AL G++ V +DH K DF K GI + + +++D
Sbjct: 287 DLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEA 344
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461
V+ + + D RL +T A+ F + +KG I G DAD + +P+ S+ +T + R
Sbjct: 345 VQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFVDPDESYTLTPDDLYYRH 403
Query: 462 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502
+ Y GR + G+V T G+ ++++++ P G+ +
Sbjct: 404 KVSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAP-KGQLLL 443
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 3e-52
Identities = 131/470 (27%), Positives = 211/470 (44%), Gaps = 63/470 (13%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG VV AD+ +++G + + P I+ +++DA G +V PG ID H H
Sbjct: 5 LIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHF 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAK----NS 167
G + F +G AA AGG T + D +P+N +T EA + KA+ S
Sbjct: 64 NEP--GRTHWEGFATGSAALAAGGCTTYFD--MPLNSIPPTVTR--EALDAKAELARQKS 117
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFMAYKGS--FMINDEL-LIEGFK 222
+D+ W +V +E + + E G+ FK FM+ G+ F +D+L L EG K
Sbjct: 118 AVDFAL------WGGLVPGNLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMK 171
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
+LG + +HAE+ + + G T + SRP + E EA RA+ A+
Sbjct: 172 EIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET 231
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV---TAAKYVM 339
PL+ VH+ S A+ IA+A+K G V E L+ DF AK
Sbjct: 232 GCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFT-----EEDFERIGAVAK--C 284
Query: 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVW- 398
+PP+R+ + L L G + ++ +DH K + LVW
Sbjct: 285 APPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKE-------------GDDFFLVWG 331
Query: 399 ---------DTMVESG----QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445
M+ G I + RL +T A+ F + P+KG + VG+DAD ++ +
Sbjct: 332 GISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADFVLVD 390
Query: 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495
+ ++ +T R + YEGR G+V T G+ V+++ E+ P
Sbjct: 391 LDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDGEVFPPP 440
|
Length = 451 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-50
Identities = 127/464 (27%), Positives = 214/464 (46%), Gaps = 45/464 (9%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
L+K G V + Q DV ++ G + AV +++ +V+DA G ++PGGID H H
Sbjct: 4 ALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVH- 62
Query: 115 AMEF--MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA----KNSC 168
F G + +++G +A AGG T +D P T E++++KA + S
Sbjct: 63 ---FREPGYTHKETWYTGSRSAAAGGVTTVVD--QPNTDPPTVDGESFDEKAELAARKSI 117
Query: 169 MDYGFHMAITK-WDEVVSDEMEVMVKEKGINSF-KFFMA-YKGSFMINDELLIEGFKRCK 225
+D+G + +T WD + S + E+G+ + + FMA G I++EL E
Sbjct: 118 VDFGINGGVTGNWDPLES------LWERGVFALGEIFMADSTGGMGIDEELFEEALAEAA 171
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG LA VHAE+ D E K + G + + RP E A RA+ +A
Sbjct: 172 RLGVLATVHAEDEDLFDELAKLLK--GDADADAWSAYRPAAAEAAAVERALEVASETGAR 229
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL-DDSWLWHSDFVTAAKYVMSPPIR 344
+++ H+ + + ++ + + E L L W T K M+PP+R
Sbjct: 230 IHIAHISTPEGVDAARRE-----GITCEVTPHHLFLSRRDW---ERLGTFGK--MNPPLR 279
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTM 401
+ +AL L G + +V +DH +K D P+ G+E + L+
Sbjct: 280 SEKRREALWERLNDGTIDVVASDHAPHTREEKD---ADIWDAPSGVPGVETMLPLLLAA- 335
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461
V ++ + +T+ ARIF + KG I G DAD+++ +P+++ EI HS+
Sbjct: 336 VRKNRLPLERVRDVTAANPARIFGL-DGKGRIAEGYDADLVLVDPDAAREIRGDDLHSKA 394
Query: 462 DTNVYEGRRVKGKV-EVTIAGGRVVWENDELNVVPGSGKYIEMR 504
+EG +G E+T+ G VVW+ D++N G G+++ R
Sbjct: 395 GWTPFEGM--EGVFPELTMVRGTVVWDGDDINAKRGRGEFLRGR 436
|
Length = 443 |
| >gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 7e-48
Identities = 107/397 (26%), Positives = 176/397 (44%), Gaps = 33/397 (8%)
Query: 92 DVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT----M-HIDFV 146
D +V+DA GK + PG +D H HL G E + SG AA AGG T M + + V
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHL--REPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPV 58
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV--KEKGINSFKFFM 204
I + + + G A+TK + E+ + E G F
Sbjct: 59 IDNPAVVELLKNRAKDVGIVRVLPIG---ALTKGLKGE--ELTEIGELLEAGAVGF---- 109
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264
+ G + + ELL + L +VH E+ G M E + G P
Sbjct: 110 SDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGV--MNEGKVASRLGLP-GIP 166
Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324
P E R + LAE ++ H+ + ++E I KA+ G V E L+LDD
Sbjct: 167 PEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDE 226
Query: 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFR 384
L + T AK ++PP+R+ +AL AL G + + +DH +K +
Sbjct: 227 AL--ESYDTNAK--VNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAE-- 280
Query: 385 KIPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 441
P GI E + L+W +V+ G +++ D +R ST A+I + P G + VG+ AD+
Sbjct: 281 -APPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLPP--GRLEVGAPADL 337
Query: 442 IIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 478
++F+P++ + + + S+ ++G+++KG+V T
Sbjct: 338 VLFDPDAEWIVDEETFRSKSKNTPFDGQKLKGRVLAT 374
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 2e-47
Identities = 113/420 (26%), Positives = 187/420 (44%), Gaps = 16/420 (3%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
D+ VE G + + D +V+DA G V+PG ID H HL + G E +D SG
Sbjct: 6 VDILVEGGRIKKIGKLRIPPDA-EVIDAKGLLVLPGFIDLHVHLR-DP-GEEYKEDIESG 62
Query: 131 QAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEM 188
AA GG T D P + ++ K S +D + +T+ ++
Sbjct: 63 SKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTE 122
Query: 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248
+KE G F GS + + + + G +HAE+ D ++ G
Sbjct: 123 AYELKEAGAVGRMFTD--DGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMH- 179
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308
G + + +RPP E A R + LA+ P+++ H+ + +++E I KA+ G
Sbjct: 180 --EGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGI 237
Query: 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368
++ E L+L + + D ++PP+R AL L GI+ ++ TDH
Sbjct: 238 KITAEVTPHHLLLSEEDVARLD----GNGKVNPPLREKEDRLALIEGLKDGIIDIIATDH 293
Query: 369 CAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 428
+K G+E + L+ +V+ G IS+ D +R+ S ARIF + P
Sbjct: 294 APHTLEEKTKEFAAAPPGIPGLETALPLLLQLLVK-GLISLKDLIRMLSINPARIFGL-P 351
Query: 429 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
KG + G+ ADI +F+ + I A + +S+ +EG +KGK TI G+VV+E+
Sbjct: 352 DKGTLEEGNPADITVFDLKKEWTINAETFYSKAKNTPFEGMSLKGKPIATILRGKVVYED 411
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 6e-45
Identities = 133/470 (28%), Positives = 216/470 (45%), Gaps = 43/470 (9%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTV+ + ++ D+ V+ G + A+ ++ GD +V+DA+G V PG +D H
Sbjct: 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
TH++ G + + +G AA GG T I+ +P+N S+ F+A + K
Sbjct: 60 THISEP--GRSHWEGYETGTRAAAKGGITTMIE--MPLNQLPATVDRASIELKFDAAKGK 115
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMA------YKGSFM-IND 214
G +VS ++ + + E G+ FK F+A F +ND
Sbjct: 116 LTIDAAQLG---------GLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVND 166
Query: 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+G ++ LG +VH EN D + E KR G + SRP E EA
Sbjct: 167 WQFYKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEA 223
Query: 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331
R + LA+ L+V H+ S + +EE+ +AR+ GQ V E VLD
Sbjct: 224 IRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE--I 281
Query: 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIE 391
T AK SPPIR + K + L G + + +DH KA I + G++
Sbjct: 282 GTLAK--CSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQ 339
Query: 392 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 451
M +++D V+ +S+ + +L +T A IF + +KG I G DAD + PNSS+
Sbjct: 340 NCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNSSYV 398
Query: 452 ITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 501
+ R + Y GR + ++ TI G V+++ ++ V G++I
Sbjct: 399 LKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 448
|
Length = 449 |
| >gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-44
Identities = 116/392 (29%), Positives = 169/392 (43%), Gaps = 40/392 (10%)
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G ++PG ID H H E G +DF SG AA AGG T +D +P T EA
Sbjct: 1 GLLILPGVIDIHVHF-REP-GLTYKEDFVSGSRAAAAGGVTTVMD--MPNTKPPTTTAEA 56
Query: 160 YEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMIND 214
+K A S +DYG + +T E + + + +K FM G + ++
Sbjct: 57 LYEKLRLAAAKSVVDYGLYFGVTG-SEDLE-----ELDKAPPAGYKIFMGDSTGDLLDDE 110
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
E L F L HAE+ D + E +K + H R AT R
Sbjct: 111 ETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESA-----HPRIRDAEAAAVATAR 162
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A++LA L++ HV + + ++ I KA+ V E L LD D+
Sbjct: 163 ALKLARRHGARLHICHVSTPEELKLIKKAKP---GVTVEVTPHHLFLDVE-----DYDRL 214
Query: 335 AKYV-MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI--- 390
++PP+R+ KAL ALA G + ++ +DH +K G P+GI
Sbjct: 215 GTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRKGY---PAAPSGIPGV 271
Query: 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 450
E + L+ T+V G +S++ VRLTS ARIF + KG I G DAD+ + +
Sbjct: 272 ETALPLML-TLVNKGILSLSRVVRLTSHNPARIFGI-KNKGRIAEGYDADLTVVDLKEER 329
Query: 451 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482
I A HS+ +EG V G +TI G
Sbjct: 330 TIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361
|
This group contains the archeal members of the DHOase family. Length = 361 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 6e-39
Identities = 120/477 (25%), Positives = 196/477 (41%), Gaps = 95/477 (19%)
Query: 53 SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK G V++ ++ADV ++DG + A+ NI + +V+DATG V PG +D H
Sbjct: 1 MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------ID------------------ 144
HL G E + +G AA AGG TT+ ID
Sbjct: 60 VHLREP--GQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLV 117
Query: 145 FVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM 204
V+P+ G++T G G + E + KE G+ +F
Sbjct: 118 DVLPV-GAITKGLA-------------GEELT----------EFGAL-KEAGVVAF---- 148
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGHA 260
+ G + + L+ + K+L L H E V + LG+ G
Sbjct: 149 SDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPG----- 203
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320
P + E R + LAE +++ HV + ++E I A+ G +V E L+
Sbjct: 204 --IPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLL 261
Query: 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH---------CAF 371
L D L D Y ++PP+R +AL L G + + TDH C F
Sbjct: 262 LTDEDLLTYD----PNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKECEF 317
Query: 372 NSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431
FGI G+E + L++ T+V++G + + + + ARI +
Sbjct: 318 --EAAPFGI-------TGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPAGP- 367
Query: 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
+ G AD++IF+P + + + S+ + G ++KGKV TI G++V+++
Sbjct: 368 -LAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423
|
Length = 423 |
| >gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-35
Identities = 116/456 (25%), Positives = 204/456 (44%), Gaps = 44/456 (9%)
Query: 51 SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+LI+ ++ + + DV VEDG +VA+ P I+ V+DA G ++PG ID
Sbjct: 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVID 60
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AK 165
P H G E +D F+ A GG T ++ +P LT A + K A+
Sbjct: 61 PQVHFREP--GLEHKEDLFTASRACAKGGVTSFLE--MPNTKPLTTTQAALDDKLARAAE 116
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIEG-FKR 223
++YGF + T D + ++ K FM + G ++++E +E F
Sbjct: 117 KCVVNYGFFIGAT------PDNLPELLTANPTCGIKIFMGSSHGPLLVDEEAALERIFAE 170
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L A VHAE+ + + GI+ P H+ + AT A++L++
Sbjct: 171 GTRLIA---VHAEDQARIRARRAEFA--GISDPADHSQIQDEEAALLATRLALKLSKKYQ 225
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD----FVTAAKYVM 339
L+++H+ + E + + + V+ V L ++D T A+ M
Sbjct: 226 RRLHILHLSTAIEAELLRQDKP--------SWVTAEVTPQHLLLNTDAYERIGTLAQ--M 275
Query: 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG---IEERMHL 396
+PP+R+ N+AL AL G++ + TDH +KA + P+G +E + L
Sbjct: 276 NPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPL 332
Query: 397 VWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS 456
+ + G+ +V VR ST AR + + P KG I G DAD+++ + N+ +
Sbjct: 333 MLTAAMR-GKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLVLVDLNTYRPVRREE 390
Query: 457 HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492
++ + +EG + G TI GG++V++ ++N
Sbjct: 391 LLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVN 426
|
Length = 438 |
| >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 131/465 (28%), Positives = 205/465 (44%), Gaps = 59/465 (12%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
++KGGTVVN + AD+ + DG + A+ +V+D G V+PG ID H
Sbjct: 8 ILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGASAG-EVIDCRGLHVLPGVIDSQVHFR 66
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK---AKNS--CMD 170
G E +D +G AA+ GG T F +P LT EA K A++ C D
Sbjct: 67 EP--GLEHKEDLETGSRAAVLGGVTAV--FEMPNTNPLTTTAEALADKLARARHRMHC-D 121
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIE-----GFKRC 224
+ F++ T+ D DE+ + + G K FM + G ++ D+ + G +R
Sbjct: 122 FAFYVGGTR-DNA--DELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRILRNGRRR- 177
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIE---LGITG-PEGHALSRPPLLEGEATTRAIRLAE 280
A H+E+ + R+ E L + G P H + R AT R +RLA
Sbjct: 178 ------AAFHSED-------EYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLAR 224
Query: 281 FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
++V+HV + + ++ +A + E L L + T A M+
Sbjct: 225 ETGRRIHVLHVSTAEEIDFLADHK---DVATVEVTPHHLTLAAPECYER-LGTLA--QMN 278
Query: 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN------GIEERM 394
PPIR + H L + G++ ++G+DH +KA + P G++ +
Sbjct: 279 PPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA------KPYPASPSGMTGVQTLV 332
Query: 395 HLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITA 454
++ D V +G++S+ +V LTS ARIF + KG I VG DAD I + IT
Sbjct: 333 PIMLD-HVNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTIVDLKRRETITN 390
Query: 455 RSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGK 499
SR Y+G+ V G TI G+ V + EL V P +G+
Sbjct: 391 EWIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGEL-VGPPTGE 434
|
Length = 444 |
| >gnl|CDD|178392 PLN02795, PLN02795, allantoinase | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-32
Identities = 117/483 (24%), Positives = 184/483 (38%), Gaps = 74/483 (15%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGI 108
S +++ G + A V VE G +V+V VLD VMPG I
Sbjct: 50 SKRVVTPAGVIPGA-------VEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLI 102
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT----AGFEAYEKKA 164
D H HL G + F +G AA AGG T +D +P+N + E + A
Sbjct: 103 DVHVHL--NEPGRTEWEGFPTGTKAAAAGGITTLVD--MPLNSFPSTTSVETLELKIEAA 158
Query: 165 KNSCM-DYGFHMAITKWDEVVSD------EMEVMVKEKGINSFKFFMAYKGSFMIND--- 214
K D GF W +V + +E ++ + G K FM G IND
Sbjct: 159 KGKLYVDVGF------WGGLVPENAHNASVLEELL-DAGALGLKSFMCPSG---INDFPM 208
Query: 215 ---ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+ G +VHAE V ++ + SRPP E EA
Sbjct: 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPV--ESDSRLDADPRSYSTYLKSRPPSWEQEA 266
Query: 272 ---------TTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVL 321
TR +AE +++VH+ + ++E I +A+ G V E L
Sbjct: 267 IRQLLEVAKDTRPGGVAE--GAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAF 324
Query: 322 DDSWLWHSDFVT--AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
++ + +Y +PPIR + + + L AL G + ++ +DH K
Sbjct: 325 S------AEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLE 378
Query: 380 IDDFRKIPNGIEERMHLV---WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 436
+F + GI ++ W G +++ R S A++ + KGAI G
Sbjct: 379 EGNFLRAWGGISSLQFVLPATWTAGRAYG-LTLEQLARWWSERPAKLAGL-DSKGAIAPG 436
Query: 437 SDADIIIFNPNSSFEITARS----HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492
DADI++++P + F + H L Y G ++ GKV T G +V+ +
Sbjct: 437 KDADIVVWDPEAEFVLDESYPIYHKHKSLSP--YLGTKLSGKVIATFVRGNLVFLEGKHA 494
Query: 493 VVP 495
Sbjct: 495 KQA 497
|
Length = 505 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-31
Identities = 116/460 (25%), Positives = 205/460 (44%), Gaps = 49/460 (10%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+ILIK +VN DV +E+G + + +I+ V+DA G++++PG ID
Sbjct: 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQV 61
Query: 113 HLAMEFM--GSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSC 168
H F G D S AA+AGG T ++ P +L A Y+ A+ S
Sbjct: 62 H----FREPGLTHKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSL 117
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFM-AYKGSFMINDELLIEG-FKRC 224
+Y F+ T +D ++ + + K + K FM A G+ ++++ +E F+
Sbjct: 118 ANYSFYFGAT------NDNLDEIKRLDPKRVCGVKVFMGASTGNMLVDNPETLERIFRDA 171
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIEL---GITGPEGHALSRPPLLEGEA----TTRAIR 277
+L A H E+ + + E I E H L R EA ++ A+
Sbjct: 172 PTLIA---THCEDTPTIKANLAKYKEKYGDDIP-AEMHPLIR----SAEACYKSSSLAVS 223
Query: 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337
LA+ T L+V+H+ + + A +R+ E V L DD SD+
Sbjct: 224 LAKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDD-----SDYARLGNL 278
Query: 338 VM-SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMH- 395
+ +P I+ + +AL+ ALA + ++ TDH +K + + P+G+ H
Sbjct: 279 IKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEKQ---GPYFQAPSGLPLVQHA 335
Query: 396 LVWDTMVE---SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI 452
L ++E G++S+ V TS A +F++ +G I G AD+++ + NS + +
Sbjct: 336 LP--ALLELVHEGKLSLEKVVEKTSHAPAILFDI-KERGFIREGYWADLVLVDLNSPWTV 392
Query: 453 TARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492
T + + + +EGR + +V T G++V+ N +L
Sbjct: 393 TKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYHNGQLV 432
|
Length = 444 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 119/450 (26%), Positives = 182/450 (40%), Gaps = 77/450 (17%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K L+KG V + +E+G + + G +V+ G ++PG ID H H
Sbjct: 5 KFLLKGRIVE-------GGIGIENGRISKISLRDLKGK--EVIKVKGGIILPGLIDVHVH 55
Query: 114 LAMEFMGS--ETIDDFFSGQAAALAGGTTMHIDFV---IPINGSLTAGFEAYEKKAKNSC 168
L +F S ETI+ SG AAL GG T+ D PI T +E + A+
Sbjct: 56 L-RDFEESYKETIE---SGTKAALHGGITLVFDMPNTKPPIMDEKT--YEKRMRIAEKKS 109
Query: 169 -MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
DY + I E + K F A G + + +
Sbjct: 110 YADYALNFLIAGNCEKAEEIKADFYKI-------FMGASTGGIFSEN--FEVDYA--CAP 158
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G ++ VHAE+ + + E PE RPP E A RA+ + + PL+
Sbjct: 159 GIVS-VHAEDPELIREF-----------PE-----RPPEAEVVAIERALEAGKKLKKPLH 201
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS------P 341
+ H+ + D ++ I K+ P VS V H F+T Y + P
Sbjct: 202 ICHISTKDGLKLILKS--------NLPWVSFEVTP-----HHLFLTRKDYERNPLLKVYP 248
Query: 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTM 401
P+R+ KAL + + ++ +DH K G P G+E + L+ D
Sbjct: 249 PLRSEEDRKALWENFSK--IPIIASDHAPHTLEDKEAGAAGI---P-GLETEVPLLLD-A 301
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461
G IS+ D V ARIF + G I G+ A+ +F+ + I A +++
Sbjct: 302 ANKGMISLFDIVEKMHDNPARIFGI-KNYG-IEEGNYANFAVFDMKKEWTIKAEELYTKA 359
Query: 462 DTNVYEGRRVKGKVEVTIAGGRVVWENDEL 491
YEG ++KGKV +TI G VV E+DE+
Sbjct: 360 GWTPYEGFKLKGKVIMTILRGEVVMEDDEI 389
|
Length = 398 |
| >gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 7e-26
Identities = 98/434 (22%), Positives = 173/434 (39%), Gaps = 71/434 (16%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ--- 131
++DG + + ++ ++LDA GK ++P +D + +D S +
Sbjct: 3 IKDGKITEIGSDLK---GEEILDAKGKTLLPALVD---------LNVSLKNDSLSSKNLK 50
Query: 132 ---AAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS 185
L GG ++ D I+ + E + M + D +S
Sbjct: 51 SLENECLKGGVGSIVLYPDSTPAIDNEIA--LELINSAQRELPMQIFPSIRALDEDGKLS 108
Query: 186 DEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVF 242
+ I + K + ++ LL + K L E D+ F
Sbjct: 109 N----------IATL-LKKGAKALELSSDLDANLLKVIAQYAKMLDVPIFCRCE--DSSF 155
Query: 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK 302
+ M + G E P + E + + LA+F + + ++E + K
Sbjct: 156 DDSGVMND-GELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDK 214
Query: 303 ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ 362
+ G++++ E + L+LDDS +F TAAK ++PP+R+ AL AL G +
Sbjct: 215 FKSEGEKLLKEVSIHHLILDDSAC--ENFNTAAK--LNPPLRSKEDRLALLEALKEGKID 270
Query: 363 LVGTDHCAFNSTQK-------AFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415
+ + H A ++++K AFGID I E L + +V+ G I+ ++ R
Sbjct: 271 FLTSLHSAKSNSKKDLAFDEAAFGID-------SICEYFSLCYTYLVKEGIITWSELSRF 323
Query: 416 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV--YEGRRVKG 473
TS A+ + G I VG +AD+++F+PN S I D N Y G + G
Sbjct: 324 TSYNPAQFLGL--NSGEIEVGKEADLVLFDPNESTII---------DDNFSLYSGDELYG 372
Query: 474 KVEVTIAGGRVVWE 487
K+E I G++ E
Sbjct: 373 KIEAVIIKGKLYLE 386
|
Length = 386 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-16
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
+ +EDG + A+ + + +V+DA GK+V+PG ID H HL E + +G A
Sbjct: 1 ILIEDGKIAAIGGDDLPDAEAEVIDAEGKYVLPGLIDMHVHLGEE----PGRETLETGAA 56
Query: 133 AALAGGTT 140
AALAGG T
Sbjct: 57 AALAGGVT 64
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 93/439 (21%), Positives = 174/439 (39%), Gaps = 61/439 (13%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
++ VEDG + +++ + ++ A ++P D H H G +DF +G
Sbjct: 17 EIEVEDGKIKSIKKDAGNIGKKELKGA----ILPAATDIHVHFRTP--GETEKEDFSTGT 70
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDE 187
+A+ GGTT +D +P N + A+ K A + +D+ + T + ++ DE
Sbjct: 71 LSAIFGGTTFIMD--MPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNALILDE 128
Query: 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEG-FKRCKSLGALAMVHAENGDAVFEGQK 246
+ K +M G+ N + G K+ HAE + + + Q
Sbjct: 129 RSI--------GLKVYMG--GTTNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQF 178
Query: 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV-HVMSMDAMEEIAKARK 305
L H L+RP E +A++ + ++ ++ HV S+D + +
Sbjct: 179 ESKNL-----RDHDLARPI----ECEIKAVKYVKNLDLKTKIIAHVSSIDVIGRFLR--- 226
Query: 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365
E L+L+D + K ++PP+R + L +G ++
Sbjct: 227 -------EVTPHHLLLNDDM----PLGSYGK--VNPPLRDRWTQERLLEEYISGRFDILS 273
Query: 366 TDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECAR 422
+DH K +F +GI E R+ L +V+ + + + A
Sbjct: 274 SDHAPHTEEDKQ----EFEYAKSGIIGVETRVPLFL-ALVKKKILPLDVLYKTAIERPAS 328
Query: 423 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482
+F + +KG I G DAD + F+ + +I + HS+ + + G V I G
Sbjct: 329 LFGI--KKGKIEEGYDADFMAFDFTNIKKINDKRLHSKCPVSPFNGFDAIFPSHV-IMRG 385
Query: 483 RVVWENDELNVVPGSGKYI 501
VV +N EL + +GK++
Sbjct: 386 EVVIDNYEL-ISERTGKFV 403
|
Length = 409 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 9e-13
Identities = 99/441 (22%), Positives = 182/441 (41%), Gaps = 57/441 (12%)
Query: 70 IADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126
I V +EDG++VA + +++D GK V PG +D + G+E +
Sbjct: 22 IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRET 79
Query: 127 FFSGQAAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDE 182
S AA AGG T M D I+ F ++ A+++ + A ITK
Sbjct: 80 IASASRAAAAGGVTSIIMMPDTDPVIDDVALVEF--VKRTARDTAIVNIHPAAAITK--G 135
Query: 183 VVSDEM-EV-MVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGD 239
+ +EM E +++ G +F G + N +++ + A+ + D
Sbjct: 136 LAGEEMTEFGLLRAAGAVAF-----TDGRRSVANTQVMRRALTYARDFDAVIVHETR--D 188
Query: 240 AVFEGQKRMIE------LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
G M E LG++G A P LE R +RLA + +
Sbjct: 189 PDLGGNGVMNEGLFASWLGLSGIPREAEVIP--LE-----RDLRLAALTRGRYHAAQISC 241
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
++ E + +A+ G +V ++ L L+++ + ++ T K +SPP+R A+
Sbjct: 242 AESAEALRRAKDRGLKVTAGVSINHLSLNENDI--GEYRTFFK--LSPPLRTEDDRVAMV 297
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTM-------VESGQ 406
A+A+G + ++ + H Q D +++P + +T+ +G+
Sbjct: 298 EAVASGTIDIIVSSH----DPQDV----DTKRLPFSEAAAGAIGLETLLAAALRLYHNGE 349
Query: 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY 466
+ + + ST A IF + G + G+ ADII+ + + + + SR +
Sbjct: 350 VPLLRLIEALSTRPAEIFGL--PAGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPF 407
Query: 467 EGRRVKGKVEVTIAGGRVVWE 487
E R +G+V TI G+ V+E
Sbjct: 408 EEARFQGRVVRTIVAGKTVYE 428
|
Length = 429 |
| >gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+L++GG V++ + D+ +EDG + AV +I+ KV+D +G +V PG ID H
Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHV 60
Query: 113 H 113
H
Sbjct: 61 H 61
|
Length = 380 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 8e-12
Identities = 92/482 (19%), Positives = 166/482 (34%), Gaps = 105/482 (21%)
Query: 52 SSKILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ +LI+G ++ + D+ +EDG +VA+ N D +V+DA GK V+PG +
Sbjct: 1 MTMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFV 60
Query: 109 DPHTHLAM----------------------EFMGSETIDD--FFSGQAA--ALAGGTTMH 142
+ HTHL T +D + A L GTT
Sbjct: 61 NAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTA 120
Query: 143 IDFVIPINGSLTAGFEAYEK-----KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
V + S A FEA + D F + DE + + E++ + G+
Sbjct: 121 RTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGL 180
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGDAVFEGQKRMIELGITGP 256
+A + ++ ELL + + G +H AE D V
Sbjct: 181 GRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEV--------------- 225
Query: 257 EGHALSRPPLLEGEATTRAIRLAE--FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEP 314
+LE RL + + + H + + EE+ ++G V+ P
Sbjct: 226 -------ERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE-EELELLAESGASVVHCP 277
Query: 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374
S L + P+R L G+ +GTD A N+
Sbjct: 278 R--------SNLKLGSGIA--------PVR---------RLLERGVNVALGTDGAASNNV 312
Query: 375 QKAFGIDDFR--KIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432
+D R + + + +++ G+ + + + A+ + G+
Sbjct: 313 -----LDMLREMRTADLL-QKLAGGLLAAQLPGEA-----LDMATLGGAKALGL-DDIGS 360
Query: 433 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492
+ VG AD+++ + ++ SRL V+ V+ + GR+V E+ L
Sbjct: 361 LEVGKKADLVVLDASAPHLA-PLRPVSRL---VFAAGG--KDVDRVLVDGRLVMEDGRLL 414
Query: 493 VV 494
Sbjct: 415 AR 416
|
Length = 421 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 64.9 bits (157), Expect = 2e-11
Identities = 57/352 (16%), Positives = 105/352 (29%), Gaps = 54/352 (15%)
Query: 97 DATGKFVMPGGIDPHTH---LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
DA G+ V+PG +D H H L G + +G AA G T + L
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 154 T-AGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
T A+ + E++ E + ++ A
Sbjct: 61 TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG-PGLEALLREAKK 119
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
+L+ G + + G +
Sbjct: 120 AGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVA------------------------ 155
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
+ LAE ++ + + A + + + A GL + L D
Sbjct: 156 -EDLHLAEILDPGAGLGLHVIAAAADLLLEGLVAAHAG-------GLAVVPLELLLRDAA 207
Query: 333 TA-AKYVMSPPIRASG-HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI 390
A + + PP+R +AL+ LA G+ +G+DH + P +
Sbjct: 208 AAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSPA-----------GPGDL 256
Query: 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 442
E + ++ + +RL + AR+ + G + VG AD++
Sbjct: 257 LEAALFL----AALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 54 KILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ILIK GTV N ++ D+++ DG +V P KV+DA+GK VM GG+D
Sbjct: 1 EILIKNGTVYDPANGIDGEVMDIFIRDGKIVE--PVSGGTKPAKVIDASGKLVMAGGVDS 58
Query: 111 HTHLA 115
HTH+A
Sbjct: 59 HTHIA 63
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. Length = 556 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 25/233 (10%)
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARK 305
+ LG+ G P E A + L + TP VH+M + ++E IA+A+
Sbjct: 200 LRLGLPG-------DPASAETTALAALLELVAAIGTP---VHLMRISTARSVELIAQAKA 249
Query: 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365
G + L+LD L D + PP+ +AL + TG++ +
Sbjct: 250 RGLPITASTTWMHLLLDTEALASYD----PNLRLDPPLGNPSDRQALIEGVRTGVIDAIA 305
Query: 366 TDHCAFNSTQKAFGIDDFRKIPNG---IEERMHLVWDTMVESGQISVTDYVRLTSTECAR 422
DH + +K F + P G +E + L+W +VE+G++S + ST AR
Sbjct: 306 IDHAPYTYEEKTVA---FAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPAR 362
Query: 423 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 475
P ++ G A++I+F+P ++ ++A++ HS + G+ +KG+V
Sbjct: 363 CLGQEPP--SLAPGQPAELILFDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRV 413
|
Length = 418 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ LI+GGTV+ D+ +E + AV P+I D +V+DA G VMPG +
Sbjct: 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-APDAEVVDARGMIVMPGLV 60
Query: 109 DPHTHL 114
D H H
Sbjct: 61 DTHRHT 66
|
Length = 449 |
| >gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 57 IKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
IK GTV N + + D+++ DG +V + KV+DA+GK VM GG+D H+H
Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVES---SSGAKPAKVIDASGKVVMAGGVDMHSH 57
Query: 114 LA 115
+A
Sbjct: 58 IA 59
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. Length = 541 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM--EFMGSETIDD 126
DG +VAV I D +V+DA GK V PG ID H+HL + E ET D
Sbjct: 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDA 52
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 55 ILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGID 109
ILI+ GT+V +++ DV VEDG +VAV P + + +V+DA GK VMPG ++
Sbjct: 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVN 60
Query: 110 PHTHLAM 116
HTHLAM
Sbjct: 61 THTHLAM 67
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTV---VNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ILIK G V +N + + D+ V+DG +V + + KV+DA+GK VMPGG+D
Sbjct: 3 MEILIKNGIVYDPLNGINGEKMDICVKDGKIV--EESEVSESKAKVIDASGKLVMPGGVD 60
Query: 110 PHTHLA 115
H+H+A
Sbjct: 61 SHSHVA 66
|
Length = 575 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVW 398
+ PP+R+ +A++AALA G + + +DH + +K + G+E + L
Sbjct: 278 LDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTL 337
Query: 399 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 458
E+ R+TS AR+ + G + G+ AD+ +F+P++ + + R+
Sbjct: 338 KWADEAKVPLARALARITS-APARVLGL--PAGRLAEGAPADLCVFDPDAHWRVEPRALK 394
Query: 459 SRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
S+ + G + G+V T+ G+V +E
Sbjct: 395 SQGKNTPFLGYELPGRVRATLVAGQVAFER 424
|
Length = 425 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPH 111
L+K V D+ + G ++A+ NIN+ D D++V+DA+GK ++PG ID H
Sbjct: 3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQH 62
Query: 112 THLA 115
H+
Sbjct: 63 VHII 66
|
Length = 388 |
| >gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 94/414 (22%), Positives = 145/414 (35%), Gaps = 88/414 (21%)
Query: 100 GKFVMPGGIDPHTHL-AMEFMGSETIDDFFSGQAAALAGGTTMHIDF---VIPING--SL 153
G ++PG ID H HL ++ E + SG + A GG T+ D + P+N ++
Sbjct: 42 GTLILPGAIDLHVHLRGLKLSYKEDV---ASGTSEAAYGGVTLVADMPNTIPPLNTPEAI 98
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
T E ++ +DY + +TK E V D++ I +K F
Sbjct: 99 TEKLAELEYYSR---VDYFVYSGVTKDPEKV-DKL-------PIAGYKIFP--------E 139
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
D E F+ L ++H E A+ +K E AL ++
Sbjct: 140 DLEREETFRVLLKSRKLKILHPEVPLALKSNRKLRRNCWY---EIAALY---YVKDYQN- 192
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333
VH+ + A++ G V P H V
Sbjct: 193 ---------------VHITHASNPRTVRLAKELGFTVDITP-------------HHLLVN 224
Query: 334 AAKYVMS---PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI 390
K ++ PPIR L AL+ + + +DH +S +K + + P GI
Sbjct: 225 GEKDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEK---LQPYEVCPPGI 279
Query: 391 EERMHLVW--DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448
T+V G +S+ V L ST ARI + G I G A+ +
Sbjct: 280 AALSFTPPFIYTLVSKGILSIDRAVELISTNPARILGI--PYGEIKEGYRANFTVI---- 333
Query: 449 SFEITARSHHSRLDTNVYE----GRRVKGKVEVTIAGGRVVWENDELNVVPGSG 498
FE +S + V E G +K V TI G++ E V P G
Sbjct: 334 QFE---DWRYSTKYSKVIETPLDGFELKASVYATIVQGKLA--YLEGEVFPVKG 382
|
Length = 392 |
| >gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
ILIK G V+ + ++ ADV +E +V V+ NIN D V+DA+G V PG I+ HT
Sbjct: 3 ILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKPAD-TVIDASGSVVSPGFINAHT 61
Query: 113 HLAM 116
H M
Sbjct: 62 HSPM 65
|
Length = 424 |
| >gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 53 SKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILIK +V + + DV +ED + AV +++ D +DATGK V+PG I
Sbjct: 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQ 60
Query: 110 PHTHL 114
H HL
Sbjct: 61 GHIHL 65
|
Length = 445 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 KILIKGGTVV--NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++I+ GTVV ADV + DG + A+ P ++ +V+DA G V PG ID H
Sbjct: 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILSTSAR-EVIDAAGLVVAPGFIDVH 59
Query: 112 TH 113
TH
Sbjct: 60 TH 61
|
Length = 415 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 5e-08
Identities = 65/359 (18%), Positives = 108/359 (30%), Gaps = 67/359 (18%)
Query: 102 FVMPGGIDPHTHLAMEFMGSETI-DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE-- 158
V+PG ID H HL + E + +G A L GTT +D N S+ E
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 159 -----AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
A + + + G + EVV D
Sbjct: 61 EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDG----------------------AGEE 98
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
+ + K + G A A+ + E E
Sbjct: 99 AKAGADLIKVIEDGGKTAKAIDGVLPALAPHDPPTVSHEGLKNEVELAEETEEAEKLGLL 158
Query: 274 RAIRLAE-------FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326
I AE + + H + +D E I ++AG + P+ + +L
Sbjct: 159 VHIHAAEASGEVNAILGGVDLLAHCLHLDD-EAIELLKEAGSGIAHCPLSNESILHRGGR 217
Query: 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386
+ A SG + + A G + +GTD N K F +D
Sbjct: 218 FSLMSGDAQGIG----ELGSGGARLARLADK-GGVVGLGTDGAGLN--GKDFYLDPD--- 267
Query: 387 PNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445
+S + +R+ + A+ + R G+I VG DAD+++ +
Sbjct: 268 -------------------GLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 53 SKILIKGGTVVNAHHQQI-ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
+ + G + V +EDG +VAV I++ +V+DA GK V PG ID
Sbjct: 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDA 69
Query: 111 HTHLAM 116
HTHL
Sbjct: 70 HTHLGF 75
|
Length = 406 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK ++ + V VEDG +VA+ P + + +++D G++++PG ID H H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHG 60
Query: 115 AMEFMGSETIDDFFSGQAAALAG-GTT 140
+ + A ALA GTT
Sbjct: 61 GGGADFMDGTAEALKTIAEALAKHGTT 87
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 73 VYVEDGIVVAVQP----NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128
+ + DG + AV P + +DA G+ V PG +D HTHL F G D+F
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLV--FAGDRV-DEF- 56
Query: 129 SGQAAALAGGTTMHI 143
AA LAG + I
Sbjct: 57 ---AARLAGASYEEI 68
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK V+ + V +EDG + V GD V+DA G VMPG ++ HT
Sbjct: 4 IIIKNAYVLTMDAGDLKKGSVVIEDGTITEVS-ESTPGDADTVIDAKGSVVMPGLVNTHT 62
Query: 113 HLAM 116
H AM
Sbjct: 63 HAAM 66
|
Length = 430 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K G +V+ +I D+ + G +V V + +V+DA G++++PG ID H
Sbjct: 26 LVLKNGRIVDVVTGEIYKGDIAIAGGRIVGV-IGEYRAEATEVIDAAGRYIVPGFIDAHL 84
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTT 140
H+ + A L GTT
Sbjct: 85 HIESSMLTPSEFA------RAVLPHGTT 106
|
Length = 584 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHL 114
+ +EDG +V V P ++ +V+DA GK V PG ID HTHL
Sbjct: 29 GAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHL 74
|
Length = 406 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAVQPN--IN--VGDDVKVLDATGKFVMPGGI 108
+++ G + ++ V ++DG +VAV + + G +V+D GKFV+PG +
Sbjct: 7 LILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFV 66
Query: 109 DPHTHLAM 116
D H HL
Sbjct: 67 DAHLHLIS 74
|
Length = 535 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 48/300 (16%), Positives = 78/300 (26%), Gaps = 81/300 (27%)
Query: 108 IDPHTHLAM----------------EFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151
ID H HL E + +D A LAGG T +D
Sbjct: 2 IDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDM--GSTP 59
Query: 152 SLTAGFEAYEKKAKNS----------CMDYGFHMAITKWDEVVSDEMEV-MVKEKGINSF 200
T A E A+ + + A D + E G
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260
K Y + ++DE L + + LG ++HA + ++ L
Sbjct: 120 KLAGPY-TATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALL-------- 170
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320
+ + + HV +D E + ++AG + P
Sbjct: 171 --------------------RLGGRVVIGHVSHLDP-ELLELLKEAGVSLEVCP------ 203
Query: 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
+ R +AL+ L GI +GTD +
Sbjct: 204 ----LSNYLLG------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLAL 247
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 70 IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+ D+ +EDG + A+ P + V D + +DA G+ V+P +DPH HL
Sbjct: 14 LVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHL 58
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. Length = 398 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 54 KILIKGGTVVN--AHHQQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
KI IKGG +++ A + AD+YV G + A+ Q D K +DA+G V PG +D
Sbjct: 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNAD-KTIDASGLIVCPGLVDL 60
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
L G E S AAA+AGG T
Sbjct: 61 SARLREP--GYEYKATLESEMAAAVAGGVT 88
|
Length = 425 |
| >gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 55/244 (22%), Positives = 98/244 (40%), Gaps = 31/244 (12%)
Query: 262 SRPPLLEGEATTRA--IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGL 319
++P + ++ T A + LA N +++ HV S + + I A+ G +V E L
Sbjct: 125 TKPIVTHAKSQTLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHL 184
Query: 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC-----AFNST 374
L D + +Y + P + +AL L + TDH
Sbjct: 185 FLSQ------DDLPRGQYEVRPFLPTREDQEALWENLDY--IDCFATDHAPHTLAEKTGN 236
Query: 375 QKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 434
+ G G+E + L+ T V G++++ D V T RIFN+ P+ +
Sbjct: 237 KPPPGFP-------GVETSLPLLL-TAVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYV 288
Query: 435 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494
+ D+ + + I S+ +EG++VKGKV+ + G + + E+
Sbjct: 289 ---EVDL-----DEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFIDGEIVAP 340
Query: 495 PGSG 498
PG G
Sbjct: 341 PGFG 344
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. Length = 344 |
| >gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
DV +E+G + AV + +++DA G +V PG ID H H
Sbjct: 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVH 42
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338 |
| >gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 401 MVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 453
+VE IS+TD R++S AR + R G++ VG DA++++F P+ FE+
Sbjct: 323 LVEFTNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPD--FEVI 373
|
[Central intermediary metabolism, Amino sugars]. Length = 380 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 72 DVYVEDGIVVAV----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
V V DG +VAV + G +V+D GK V+PG ID H+HL +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLL 49
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 398 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITA 454
+VE G IS+ + VR+ S A+ + R G+I G DAD+++ + + + A
Sbjct: 316 VRNLVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDD--LNVKA 370
|
Length = 380 |
| >gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I+ G VV+ + DV ++ G + AV GD + +DATG V PG ID H
Sbjct: 21 LVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD--RTIDATGLVVAPGFIDLHA 78
Query: 113 H 113
H
Sbjct: 79 H 79
|
Length = 509 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 69 QIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127
+IADV +EDG + A++P+I + D +++DA+G + PG +D ++H + E G E +
Sbjct: 20 RIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSH-SGE-PGFEERETL 77
Query: 128 FSGQAAALAGGTT 140
S AAA AGG T
Sbjct: 78 ASLAAAAAAGGFT 90
|
Length = 418 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447
MV+ G + + VR+ S A++ + RKG++ G DAD+++ + +
Sbjct: 317 NMVKWGGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDD 364
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 95 VLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----------FSGQAAALAGGTTM 141
V+D GK +MPG ID HTHL + +AA AG TT+
Sbjct: 3 VIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTV 59
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 54 KILIKGGTVVNAHHQQIAD---VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+K G + H + D V +EDG + AV P + D +++D G ++PG ID
Sbjct: 1 MYALKNGRIFTGH--GVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDL 57
Query: 111 HTH-----LAMEFMGSETID 125
H H M+ ET++
Sbjct: 58 HIHGGGGADFMDAGSVETLE 77
|
Length = 380 |
| >gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 55 ILIKGGTVVNAHHQQI----ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGG 107
+LI GT + + + +E ++V + + D + +DA GK +MPG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGL 61
Query: 108 IDPHTHL 114
I+ H H+
Sbjct: 62 INSHNHI 68
|
Length = 442 |
| >gnl|CDD|130246 TIGR01178, ade, adenine deaminase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK +++ ++ +I D+ + +G + V + VKV+DA G++ +PG ID H
Sbjct: 2 IVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY----NGVKVIDALGEYAVPGFIDAHI 57
Query: 113 HLAMEFM 119
H+ +
Sbjct: 58 HIESSML 64
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 552 |
| >gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
IL+ GG +++ +I ++ + +G + A + + +++DA G V PG ID H
Sbjct: 6 ILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHV 64
Query: 113 H 113
H
Sbjct: 65 H 65
|
Length = 386 |
| >gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++++ +V + +EDG + A+ P + +DA G +++PG +D H
Sbjct: 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGASALPGA--IDAEGDYLLPGLVDLH 58
Query: 112 T-HLAMEFM 119
T +L
Sbjct: 59 TDNLEKHLA 67
|
Length = 383 |
| >gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
LIK V + D+ + G ++A++ +N+ ++V V+D GK ++PG ID H H
Sbjct: 3 LIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVH 62
Query: 114 LA 115
+
Sbjct: 63 II 64
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387 |
| >gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 55 ILIKGGTVV---NAHHQQIAD--VYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
+ IK + +A ++IAD + VE G +V V P +V DA G V PG +
Sbjct: 3 LWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLV 62
Query: 109 DPHTHL 114
+ H H
Sbjct: 63 NTHHHF 68
|
Length = 451 |
| >gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++++ + + + D+ + G + AV+P + + + +DA G+ V P +DPH H+
Sbjct: 4 LIVRNANLPDG--RTGIDIGIAGGRIAAVEPGLQ-AEAAEEIDAAGRLVSPPFVDPHFHM 60
|
Length = 426 |
| >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
D+ + DG + A+ P + +V D G +PG +D H HL F G
Sbjct: 17 VDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWG 66
|
Length = 391 |
| >gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTVVNAHHQQ---IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK +V + ++ +VY+E +V V ++N D ++DATGK VMPG I+ H
Sbjct: 3 ILIKNAWIVTQNEKREILQGNVYIEGNKIVYVG-DVNEEADY-IIDATGKVVMPGLINTH 60
Query: 112 THLAM 116
H+ M
Sbjct: 61 AHVGM 65
|
Length = 418 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 66 HHQQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLA-MEFMG 120
+ + + VE+G +VAV + V++ D G +MPG ID H H E +
Sbjct: 2 EYFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA 61
Query: 121 S 121
S
Sbjct: 62 S 62
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
D+ + DG + A+ P D++ +D G+ V P +D HTHL
Sbjct: 41 VDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHL 84
|
Length = 438 |
| >gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 9/153 (5%)
Query: 108 IDPHTHLAMEF--------MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
ID H HL M D + L G + + + + S
Sbjct: 1 IDAHAHLPGGSIPDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANNR 60
Query: 160 YEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI 218
+A + A+ D E + E+E + E G + G +++ L
Sbjct: 61 VLAEALKRPGRFVGGAALPPPDPEDAAAELERRLAELGFRGVRLNPHPGGGPLLDPRLDD 120
Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
F+ LG +H GDA + L
Sbjct: 121 PIFEALAELGLPVDLHTGFGDAGEDLDAAQPLL 153
|
These proteins are amidohydrolases that are related to pfam01979. Length = 272 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 73 VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
+ + G +V + + + +++D G V PG +DPHTHL F G +++F
Sbjct: 6 ILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLV--FAGDR-VNEF--- 59
Query: 131 QAAALAGGTTMHI 143
L G + + I
Sbjct: 60 -EMKLQGASYLEI 71
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDP 110
ILI G +++ + +I ++ + + I+V + +++ A G V PG ID
Sbjct: 5 ILITNGHIIDPARNINEINNLRIINDIIV---DADKYPVASETRIIHADGCIVTPGLIDY 61
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
H H+ + G+E G T +D GS TA F+A+ +
Sbjct: 62 HAHVF--YDGTEG---GVRPDMYMPPNGVTTVVD-----AGSAGTANFDAFYR 104
|
Length = 379 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
E +S+ + VR + AR+F + R G I G ADI++F+P+ + R+ +R +
Sbjct: 331 ERKLLSLEEAVRKMTGLPARVFGLADR-GRIAPGYRADIVVFDPD---TLADRATFTRPN 386
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDE-LNVVPG 496
EG +E + G V + PG
Sbjct: 387 QPA-EG------IEAVLVNGVPVVRDGAFTGARPG 414
|
Length = 415 |
| >gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 451
V+ G I + +R+ ++ ARI + KG I G DAD++I + +
Sbjct: 317 VKCGDIPLEVALRVITSNVARILKLRK-KGEIQPGFDADLVILDKDLDIN 365
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387 |
| >gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 55 ILIKGGTVVNA--HHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPH 111
++I+ G + + + DV + DG++ AV G + +DA G+ V PG ID H
Sbjct: 8 VVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVH 67
Query: 112 THLAMEFM 119
TH E +
Sbjct: 68 THYDAEVL 75
|
Length = 579 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK08044 | 449 | allantoinase; Provisional | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 100.0 | |
| PRK09059 | 429 | dihydroorotase; Validated | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| PRK09060 | 444 | dihydroorotase; Validated | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 100.0 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 100.0 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 100.0 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 100.0 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 100.0 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 100.0 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 100.0 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 100.0 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 100.0 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 100.0 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 100.0 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 100.0 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 100.0 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 100.0 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 100.0 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 100.0 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 100.0 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 100.0 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 100.0 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 100.0 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 100.0 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 100.0 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 100.0 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 100.0 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 100.0 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 100.0 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 100.0 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 100.0 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 100.0 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 100.0 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 100.0 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 100.0 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 100.0 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 100.0 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 100.0 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 100.0 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 100.0 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 100.0 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 100.0 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 100.0 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 100.0 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 100.0 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 100.0 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.98 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 99.98 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 99.98 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 99.98 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 99.97 | |
| PLN02303 | 837 | urease | 99.97 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 99.97 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.97 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 99.97 | |
| PRK06846 | 410 | putative deaminase; Validated | 99.97 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.97 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.96 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 99.96 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.96 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.96 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.96 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.96 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.95 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.95 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.95 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.95 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.95 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 99.95 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 99.94 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.94 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.93 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.92 | |
| PLN02599 | 364 | dihydroorotase | 99.9 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.89 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.87 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.87 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.84 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.78 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.78 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 99.74 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.7 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.6 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.54 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.53 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 99.1 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 99.0 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 98.99 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.99 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 98.93 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.92 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 98.82 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 98.77 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.73 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.7 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.69 | |
| PRK10425 | 258 | DNase TatD; Provisional | 98.48 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 98.47 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.46 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 98.13 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 98.07 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 98.05 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 97.72 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 97.66 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 97.66 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 97.53 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 97.37 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 97.14 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 97.11 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 96.82 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 96.76 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 96.7 | |
| PF07908 | 48 | D-aminoacyl_C: D-aminoacylase, C-terminal region; | 96.27 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 95.9 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 95.5 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 93.85 | |
| PRK08392 | 215 | hypothetical protein; Provisional | 93.51 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 92.42 | |
| COG4464 | 254 | CapC Capsular polysaccharide biosynthesis protein | 91.22 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 90.51 | |
| PRK07945 | 335 | hypothetical protein; Provisional | 86.44 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 86.12 | |
| KOG3020 | 296 | consensus TatD-related DNase [Replication, recombi | 85.6 | |
| cd01319 | 496 | AMPD AMP deaminase (AMPD) catalyzes the hydrolytic | 82.86 | |
| TIGR01429 | 611 | AMP_deaminase AMP deaminase. This model describes | 82.65 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 81.11 | |
| PRK07328 | 269 | histidinol-phosphatase; Provisional | 80.6 | |
| PLN03055 | 602 | AMP deaminase; Provisional | 80.24 |
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=529.91 Aligned_cols=479 Identities=85% Similarity=1.330 Sum_probs=418.4
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
+.+++|+|++|++++....++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+..+....+++.++.
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s 83 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQ 83 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCCCCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHH
Confidence 56799999999997766778999999999999876433335789999999999999999999988744456788999999
Q ss_pred HHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCc
Q 009410 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (535)
++++.+||||+.||..+......+.++.......+..++++++.+......+...++..+.+..|+..+|+++.+.+...
T Consensus 84 ~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~ 163 (486)
T PLN02942 84 AAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLM 163 (486)
T ss_pred HHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCCCCC
Confidence 99999999999999766544456666666666556667777776554433333456666654568888999988777667
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+++.+.+.++.+++.|.++++|+++........+.+...|..++..|...+|..+|..++.+++.+++..+.++|+.|+
T Consensus 164 ~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~ 243 (486)
T PLN02942 164 VTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHV 243 (486)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999999999999999999998877777777777789888888888899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
++.+.++.++.+++.|+.|+++++++++.++++.+...++..+..++++||+|...+++.+++++++|+++++||||.|+
T Consensus 244 s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~ 323 (486)
T PLN02942 244 MSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPF 323 (486)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCC
Confidence 99999899999999999999999999999999888665555678899999999999999999999999999999999999
Q ss_pred ChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCC
Q 009410 372 NSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~ 448 (535)
+...++.+.++|..+|. |++..++.+++.++..+.++++++++++|.|||++||+++++|+|++|++||||++|.++
T Consensus 324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~ 403 (486)
T PLN02942 324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNS 403 (486)
T ss_pred ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCc
Confidence 88877654457887876 888889888877777778999999999999999999997778999999999999999999
Q ss_pred ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCcccccCchhhhHHHhhhccccc
Q 009410 449 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPV 528 (535)
Q Consensus 449 ~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535)
.+.++...+.++..|+||+|..+.++|..||++|++||++|+++..++.|++++++.+.++|.+..++++.|++||+.|+
T Consensus 404 ~~~v~~~~~~s~~~~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (486)
T PLN02942 404 TFTISAKTHHSRIDTNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEMPPFSYLFDGIQKADAAYLSSLRAPV 483 (486)
T ss_pred cEEEcHHHccccCCCCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEecCCCcccccccccccccccCccccccc
Confidence 99999988899999999999999999999999999999999999888899999998876678888999999999999999
Q ss_pred cc
Q 009410 529 KR 530 (535)
Q Consensus 529 ~~ 530 (535)
++
T Consensus 484 ~~ 485 (486)
T PLN02942 484 KR 485 (486)
T ss_pred cc
Confidence 87
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-64 Score=471.56 Aligned_cols=480 Identities=55% Similarity=0.902 Sum_probs=456.0
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
+..++|+|++|+..+.....||+++||.|.+|+++..++.+.++||++|++|+||.||.|+|+-.+++|....++|.++.
T Consensus 13 s~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GT 92 (522)
T KOG2584|consen 13 SNRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGT 92 (522)
T ss_pred ccceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCCCceEEecCCcEEecCccCccceeccccCCccchhhhhccc
Confidence 56699999999998888899999999999999999988989999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC
Q 009410 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (535)
+++++.|+|.++|+..|... ...++++.++..+. ....+|+++.+++.|..+..+++.-+.++.|+..|++|+.|.+.
T Consensus 93 kAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk~~ 172 (522)
T KOG2584|consen 93 KAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYKDL 172 (522)
T ss_pred HHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeeccc
Confidence 99999999999999887774 78899999988874 68999999999999999999999988889999999999999999
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
++++++++.+.+..+++.|....+|+++...+.+..+.+.++|++++++|..++|...|.+++.+++.++...+.|+.++
T Consensus 173 ~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvv 252 (522)
T KOG2584|consen 173 YMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVV 252 (522)
T ss_pred cccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcc-cHHHHHHHHhcCCeEEEeCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG-HNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
|..+..+.+.+.++++.|..|..+|+...+..+...++..+|..+..|.++||+|... ....++.+|..|..-..||||
T Consensus 253 hVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdh 332 (522)
T KOG2584|consen 253 HVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDH 332 (522)
T ss_pred EEeehhHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCC
Confidence 9999998899999999999999999998998899999999999999999999999986 788999999999999999999
Q ss_pred CCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEc
Q 009410 369 CAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld 445 (535)
++++...+.++.+.|..+|+ |++.+|++.|.+.+..+.|++.+.+...+.|+|++|++.+++|+|.+|.+|||||||
T Consensus 333 ctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwd 412 (522)
T KOG2584|consen 333 CTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWD 412 (522)
T ss_pred CCCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheeccCcCceecccCCCcEEEEC
Confidence 99999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc-ccccCchhhh--HHHhh
Q 009410 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN-YLFHGLDKAD--AKYLS 522 (535)
Q Consensus 446 ~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 522 (535)
++...+|++........++.|+|+...+.+.-|+..||+||.+|.+....+.|+++.+++|. +++.+.++++ ..++.
T Consensus 413 p~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fip~~~f~~~vy~~i~~r~~~~~~~~ 492 (522)
T KOG2584|consen 413 PNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFIPRSPFPDYVYKRIKARDKTAELRG 492 (522)
T ss_pred CCcceEeccccccccccceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCceeeCCCCcHHHHHHHHhhhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 6999999998 57777
Q ss_pred hcccccccc
Q 009410 523 SLQAPVKRL 531 (535)
Q Consensus 523 ~~~~~~~~~ 531 (535)
.-|.|.+.+
T Consensus 493 v~r~~y~~~ 501 (522)
T KOG2584|consen 493 VPRGPYDGP 501 (522)
T ss_pred ccccccCCc
Confidence 777766543
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=470.09 Aligned_cols=448 Identities=37% Similarity=0.622 Sum_probs=380.4
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccccc-CCCCchhhhHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSG 130 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~-~g~~~~~~~~~~ 130 (535)
.++++|+|++|+++.....++|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|+.... .+....+++...
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~ 80 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTG 80 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--CCCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHH
Confidence 467899999999977666789999999999998753 34578999999999999999999997641 124456888888
Q ss_pred HHHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhc-ccccccceeeeeecCChhh-HHHHHHHHHHcCCCEEEEEeecC
Q 009410 131 QAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVV-SDEMEVMVKEKGINSFKFFMAYK 207 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ik~~~~~~ 207 (535)
.+.++.+||||++|+..... ....+.++....... ...++++++........+. .++++.+. +.|++.+|+|+++.
T Consensus 81 s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~-~~G~~~iKi~~~~~ 159 (477)
T PRK13404 81 TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALI-AQGYTSFKVFMTYD 159 (477)
T ss_pred HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHH-HcCCCEEEEEecCC
Confidence 99999999999999864322 245666666655443 3567777776655443333 35677776 78999999997654
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEE
Q 009410 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (535)
Q Consensus 208 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (535)
+ ...+++.+.++++.|+++|.++.+|+++...+....+.+...|......|...+|..++...+.+.+.+++..+.++|
T Consensus 160 ~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h 238 (477)
T PRK13404 160 D-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL 238 (477)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3 456889999999999999999999999988776666777888988888888899999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCC
Q 009410 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (535)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD 367 (535)
+.|.++....+.+..+++.|+.++++++||+++++.+.+..... .+..++++||+|...++.++++++.+|...+++||
T Consensus 239 i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~-~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sD 317 (477)
T PRK13404 239 IVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGM-EGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSD 317 (477)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccc-cCCceEECCCCCChHHHHHHHHHHhCCCceEEecC
Confidence 99999999999999999999999999999999999987743211 25789999999999999999999999999999999
Q ss_pred CCCCChhhhh----cC-CCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCc
Q 009410 368 HCAFNSTQKA----FG-IDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDA 439 (535)
Q Consensus 368 ~~~~~~~~~~----~~-~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~A 439 (535)
|.|+...++. .+ ..+|+.+|. |+++.++.+++..+...+++++++++++|.|||++||+.+++|+|++|+.|
T Consensus 318 Hap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~A 397 (477)
T PRK13404 318 HAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADA 397 (477)
T ss_pred CCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcC
Confidence 9999755431 00 125777776 899999999988887878999999999999999999996678999999999
Q ss_pred cEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecC
Q 009410 440 DIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 504 (535)
Q Consensus 440 Dlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~ 504 (535)
|||++|.+..+.++.+++.+...|+||+|..+.++|..||++|++||++|+++..++.|+++++.
T Consensus 398 Dlvivd~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~~ 462 (477)
T PRK13404 398 DIAIWDPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLARS 462 (477)
T ss_pred CEEEEcCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEEEECCEEecCCCceeEecCC
Confidence 99999999999999999999999999999999999999999999999999999888789999873
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=468.73 Aligned_cols=448 Identities=54% Similarity=0.828 Sum_probs=375.8
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~ 134 (535)
++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.....+..+++++....+++
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a 80 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAA 80 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHH
Confidence 47999999998777789999999999999976433335689999999999999999999987643456788888888999
Q ss_pred HhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcC
Q 009410 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (535)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (535)
+++||||++||....+. ...+.++....... ....+++++........+..++......+.|+..+|+++++++.+..
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 160 (454)
T TIGR02033 81 AAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKNLLMV 160 (454)
T ss_pred HhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Confidence 99999999999755432 45566665554432 24555555544333334434442233336788999999888777788
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
+.+.+.++++.|++++.++.+|+++........+.+.+.|......|...+|...+...+.+++.++...+.+++++|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s 240 (454)
T TIGR02033 161 DDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVS 240 (454)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999999999887777777777778899888889889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCC
Q 009410 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (535)
Q Consensus 293 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~ 372 (535)
+...++.++.+++.|+.++++.+|+++.++.+.+...++. ...++++||+|...+++++++++++|+.+++||||.|++
T Consensus 241 ~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~-~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~ 319 (454)
T TIGR02033 241 TASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFE-GAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFN 319 (454)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccc-cceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCC
Confidence 9887789999999999999999999999998877543333 356789999999999999999999999999999999988
Q ss_pred hhhh-hcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCC
Q 009410 373 STQK-AFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448 (535)
Q Consensus 373 ~~~~-~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~ 448 (535)
...+ ......|..+|+ |+++.++.+++.++..+.++++++++++|.|||++||+++++|+|++|++|||||+|.+.
T Consensus 320 ~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~ 399 (454)
T TIGR02033 320 FAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNR 399 (454)
T ss_pred HHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCc
Confidence 6654 111235777776 889999999988888888999999999999999999997678999999999999999999
Q ss_pred ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 449 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 449 ~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
++.++.+++.+...|+||.|+.+.++|..||++|++||++|+++..++.|+++++
T Consensus 400 ~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~~ 454 (454)
T TIGR02033 400 TTVISAETHHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGSGRFIKR 454 (454)
T ss_pred CeeechHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECCEEecCCCCcceecC
Confidence 9999998899999999999999999999999999999999999987778999863
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=467.07 Aligned_cols=448 Identities=51% Similarity=0.815 Sum_probs=383.5
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
+++|+|++|++++...+++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+...+.+...+++++...+.
T Consensus 2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 77 (459)
T PRK08323 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRA 77 (459)
T ss_pred cEEEECCEEEcCCCceEEEEEEECCEEEEEecC----CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHH
Confidence 589999999998777789999999999999875 2478999999999999999999997654344567888888889
Q ss_pred HHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCc
Q 009410 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (535)
++++||||++|+....+. ...+.++....... ....+++++........+..+++..+. +.|...+|+++.+++...
T Consensus 78 a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~ 156 (459)
T PRK08323 78 AACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELV-EEGITSFKLFMAYKGALM 156 (459)
T ss_pred HHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHH-HcCCCEEEEEEecCCCCC
Confidence 999999999999655432 45566665554432 345666665544434455567777777 678899999988877778
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+.+.+.++++.|+++|.++.+|+++........+.+...|......|...+|...+..++.+++++++..+.++|+.|+
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~ 236 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 89999999999999999999999988777776777777778888888888899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
++.+..+.++.+++.|+.|+++.+|++++++.+.+...++..+..++++||+|...++.++++++++|+.+++||||.|+
T Consensus 237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~ 316 (459)
T PRK08323 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316 (459)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence 99988899999999999999999999999998877654433457789999999999999999999999999999999998
Q ss_pred Chhhhhc-CCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCC
Q 009410 372 NSTQKAF-GIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447 (535)
Q Consensus 372 ~~~~~~~-~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~ 447 (535)
+...++. +.++|+.+|. |+++.++.+++..+..+.++++++++++|.|||++||+.++.|+|++|+.|||||+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~ 396 (459)
T PRK08323 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPN 396 (459)
T ss_pred ChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCC
Confidence 8766542 3346777776 78999999997777777899999999999999999999767899999999999999999
Q ss_pred CceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCC
Q 009410 448 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 506 (535)
Q Consensus 448 ~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~ 506 (535)
.+|.++.+++.+...|+||+|..+.++|.+||++|++||++|+++..++.|++++++.+
T Consensus 397 ~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~~~~ 455 (459)
T PRK08323 397 ATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKRKPF 455 (459)
T ss_pred cccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeCCCC
Confidence 99999999999999999999999999999999999999999999987778999998655
|
|
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=462.36 Aligned_cols=442 Identities=54% Similarity=0.861 Sum_probs=375.8
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~ 134 (535)
++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+...+....++++++...+.+
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a 80 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAA 80 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCCCCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHH
Confidence 47999999998777789999999999999976433334789999999999999999999987633345778888888999
Q ss_pred HhCCcEEEeccccCCC-CChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcC
Q 009410 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (535)
Q Consensus 135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (535)
+.+||||++||....+ ....+.++...... .....+++++........+..+++..+. +.|...+|+++.+++....
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~-~~g~~~ik~~~~~~~~~~~ 159 (447)
T cd01314 81 AAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELV-KKGISSFKVFMAYKGLLMV 159 (447)
T ss_pred HhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHH-HcCCCEEEEEeccCCCCCC
Confidence 9999999999975433 34566666554443 2345566655544443445566777776 4788899999888777778
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
+.+.+.++++.|++.+.++++|+++........+.+...|....+.|...+|...+...+.+++.+++..+.++++.|++
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999888777777777777798888888888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCC
Q 009410 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (535)
Q Consensus 293 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~ 372 (535)
+....+.++.+++.|+.++++.+|+++.++.+.+.... ..+..++++||+|...++.++++++++|+.+.+||||.|++
T Consensus 240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~-~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~ 318 (447)
T cd01314 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDW-FEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN 318 (447)
T ss_pred CHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhcccc-ccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 99988899999999999999999999999988764211 13467899999999999999999999999999999999998
Q ss_pred hhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCc
Q 009410 373 STQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 449 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~ 449 (535)
...++....+|..+|+ |+++.++.++++++..+.++++++++++|.|||++||+.+++|+|++|++|||||+|.+..
T Consensus 319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~ 398 (447)
T cd01314 319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAE 398 (447)
T ss_pred HHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcC
Confidence 8777654457888876 8999999999888877789999999999999999999977899999999999999999999
Q ss_pred eeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCc
Q 009410 450 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 498 (535)
Q Consensus 450 ~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~ 498 (535)
+.++.+++.+...|+||.|..+.++|.+||++|++||++|+++..++.|
T Consensus 399 ~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~~~~~~~~~~~~g 447 (447)
T cd01314 399 KTISADTHHHNVDYNIFEGMKVKGWPVVTISRGKVVVEDGELVGEKGSG 447 (447)
T ss_pred EEecHHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECCEEeccCCCC
Confidence 9999999999999999999999999999999999999999999876654
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=456.52 Aligned_cols=447 Identities=23% Similarity=0.316 Sum_probs=367.0
Q ss_pred CcccccCcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCC---CCceEEecCCCEEeecccccccccccccCCC
Q 009410 45 PQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (535)
Q Consensus 45 ~~~~~~~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~---~~~~vID~~G~~vlPGlID~H~H~~~~~~g~ 121 (535)
.+|+..++.+++|+|++|++++....++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+... +.
T Consensus 36 ~~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~--~~ 113 (505)
T PLN02795 36 DRCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEP--GR 113 (505)
T ss_pred cccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCC--Cc
Confidence 3444444579999999999987777899999999999999754321 256899999999999999999999765 55
Q ss_pred CchhhhHHHHHHHHhCCcEEEecccc-C-CCCChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCC
Q 009410 122 ETIDDFFSGQAAALAGGTTMHIDFVI-P-INGSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198 (535)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 198 (535)
..++++....++++.+||||++||.. . +.......++...+... ...++++++.+......+..+.+.++. +.|+.
T Consensus 114 ~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~-~~G~~ 192 (505)
T PLN02795 114 TEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELL-DAGAL 192 (505)
T ss_pred cchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHH-HCCCc
Confidence 56788889999999999999999972 2 22245555555555443 356667666544333334455666665 67888
Q ss_pred EEEEEeecCCC---CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHH
Q 009410 199 SFKFFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (535)
Q Consensus 199 ~ik~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 275 (535)
++|+|+.+++. ...+.+.+.++++.++++|.++.+|+++........ ....+...+..|...+|..+|..++.++
T Consensus 193 g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~--~~~~~~~~~~~~~~~rP~~aE~~ai~~~ 270 (505)
T PLN02795 193 GLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS--RLDADPRSYSTYLKSRPPSWEQEAIRQL 270 (505)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhh--hhhcCCcChhHhcccCCHHHHHHHHHHH
Confidence 89998765443 256889999999999999999999999876543221 1133444455566778999999999999
Q ss_pred HHHHHhc-------CCCEEEEEccCH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcc
Q 009410 276 IRLAEFV-------NTPLYVVHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347 (535)
Q Consensus 276 ~~~~~~~-------~~~~~~~H~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 347 (535)
+.+++.. +.++|+.|.++. +..+.++.+++.|+.|++++++||++++.+.+.. .+..++++||+|...
T Consensus 271 ~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~----~~~~~k~~PPLR~~~ 346 (505)
T PLN02795 271 LEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPD----GDTRYKCAPPIRDAA 346 (505)
T ss_pred HHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccC----CCCceEEcCCCCChH
Confidence 9999999 999999999999 8899999999999999999999999999987743 357899999999999
Q ss_pred cHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHc
Q 009410 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 424 (535)
Q Consensus 348 ~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~l 424 (535)
+++++|++++.|...+++|||.|++...+......|+.+|. |++..++.++..++ +.+++++++++++|.|||++|
T Consensus 347 d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~-~~~l~l~~~v~~~s~~pA~~~ 425 (505)
T PLN02795 347 NRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGR-AYGLTLEQLARWWSERPAKLA 425 (505)
T ss_pred HHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998887654456887776 99999999997666 456999999999999999999
Q ss_pred CCCCCCccccCCCCccEEEEcCCCceeeecCC-ccccCC-CCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEee
Q 009410 425 NVYPRKGAILVGSDADIIIFNPNSSFEITARS-HHSRLD-TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502 (535)
Q Consensus 425 gl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~-~~~~~~-~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~ 502 (535)
|+ +++|+|++|+.|||||+|.+..|.++.+. +.+... |+||+|+.+.++|.+||++|++||++|+++. ++.|+++.
T Consensus 426 gl-~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~~-~~~G~~~~ 503 (505)
T PLN02795 426 GL-DSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHAK-QACGSPIL 503 (505)
T ss_pred CC-CCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEcC-CCCCeEec
Confidence 99 67899999999999999999999998774 677887 9999999999999999999999999999984 56788876
Q ss_pred c
Q 009410 503 M 503 (535)
Q Consensus 503 ~ 503 (535)
.
T Consensus 504 ~ 504 (505)
T PLN02795 504 A 504 (505)
T ss_pred C
Confidence 4
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-56 Score=443.52 Aligned_cols=422 Identities=31% Similarity=0.495 Sum_probs=373.0
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
+++|+|+++++++....++|+|+||+|++|+++.....+.++||++|++|+|||||.|+|+..+ |...++++.++.++
T Consensus 2 ~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~~~~~iiD~~g~~v~PG~ID~HVH~rep--g~~~ke~~~tgs~A 79 (430)
T COG0044 2 DLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHFREP--GFEHKETFETGSRA 79 (430)
T ss_pred cEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCCCCCcEEECCCCEEccCeeEEEEecCCC--CcchhhhHHHHHHH
Confidence 5899999999986678999999999999999875433678999999999999999999999999 89999999999999
Q ss_pred HHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCc
Q 009410 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (535)
++++||||++||....+. .....++....... ...+++.++.+.+.......+.+.. . . ..++|.|+++.. ..
T Consensus 80 Aa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~-~-~--~~g~~~F~~~~~-~~ 154 (430)
T COG0044 80 AAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTER-G-V--EAGFKGFMDDST-GA 154 (430)
T ss_pred HHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhh-h-h--ccceEEEecCCc-Cc
Confidence 999999999999765554 56666776666665 6888999999888776543322222 2 1 455677776543 55
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+.+.+++.++.+...|..+..|+++..... ......|......|...+|..++...+.+.+++++..+.++|++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~---~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~Hi 231 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHI 231 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhHhh---hHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 7899999999999999999999999886554 3344568888888888999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
++.+..+.++.++..|.+|++++++||++++++.+.. .+..++++||+|...++.++++.+++|....++|||+|+
T Consensus 232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~----~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPh 307 (430)
T COG0044 232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED----LGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPH 307 (430)
T ss_pred CCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhc----cCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCC
Confidence 9999999999999999999999999999999988865 458899999999999999999999999999999999999
Q ss_pred ChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCC
Q 009410 372 NSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~ 448 (535)
+..++.. +|..+|. |+|..+++++. +++.+.+|+.+.+++.|.|||++||+.. .|.|++|+.|||+|+|.+.
T Consensus 308 t~eeK~~---~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~ 382 (430)
T COG0044 308 TLEEKRL---PFEEAPSGIPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDE 382 (430)
T ss_pred CHHHhcc---chhhCCCCCccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCC
Confidence 9999864 5888887 99999999997 9999999999999999999999999954 7889999999999999999
Q ss_pred ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 449 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 449 ~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
.|.++.+.+.++..|+||+|..+.+.|.+|+++|++||++++....
T Consensus 383 ~~~i~~~~~~sk~~~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~~~ 428 (430)
T COG0044 383 EWTIRAEELYSKAKNSPFEGFELKGRVVATILRGKVVYEDGEVIAK 428 (430)
T ss_pred CeEEchhhhccccCCCCcCCCEEeeeEEEEEECCEEEEECCcEecC
Confidence 9999999999999999999999999999999999999999986654
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=446.06 Aligned_cols=440 Identities=27% Similarity=0.393 Sum_probs=368.9
Q ss_pred CcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHH
Q 009410 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~ 130 (535)
|+++++|+|++|+++++...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +....+++...
T Consensus 1 ~~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~-~~~~~~iD~~g~~vlPG~ID~H~H~~~~--~~~~~~~~~~~ 77 (451)
T PRK06189 1 MMYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHFNEP--GRTHWEGFATG 77 (451)
T ss_pred CCccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCC-CCCCeEEECCCCEEecCEEEeeeccCCC--CCCCcccHHHH
Confidence 45789999999999887778999999999999987643 2357899999999999999999999876 55567888888
Q ss_pred HHHHHhCCcEEEeccccC--CCCChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecC
Q 009410 131 QAAALAGGTTMHIDFVIP--INGSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (535)
.+.++++||||+++|... +.......+....+.. ....+++.++..... +..+++..+. +.|+..+|+|++..
T Consensus 78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~l~~l~-~~Gv~~~k~f~~~~ 153 (451)
T PRK06189 78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVP---GNLEHLRELA-EAGVIGFKAFMSNS 153 (451)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEecccc---cCHHHHHHHH-HcCCcEEEEEcccc
Confidence 999999999999999521 1112334444444433 345677777643332 2355666766 78999999987643
Q ss_pred C---CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCC
Q 009410 208 G---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (535)
Q Consensus 208 ~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (535)
+ ....+...+.++++.+.+.+..+.+|+++..........+...|..+...|...+|..++...+.+.+.++++.+.
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~ 233 (451)
T PRK06189 154 GTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGC 233 (451)
T ss_pred CCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 2345778899999999999999999999887666555566677877777788888999999999999999999999
Q ss_pred CEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEE
Q 009410 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLV 364 (535)
Q Consensus 285 ~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~l 364 (535)
++|+.|.++...++.+..+++.|..+++++++|+++++++.+.. .+..++++||+|...++.++++++++|+.+++
T Consensus 234 ~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i 309 (451)
T PRK06189 234 PLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER----IGAVAKCAPPLRSRSQKEELWRGLLAGEIDMI 309 (451)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC----cCCceEEeCCCCChhhHHHHHHHHhCCCceEE
Confidence 99999999999999999999999999999999999999987753 24678999999999999999999999999999
Q ss_pred eCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccE
Q 009410 365 GTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 441 (535)
Q Consensus 365 gtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADl 441 (535)
+|||.|++...+.. ..|+..|. |+++.++.++...+..++++++++++++|.|||++||+ +++|+|++|++|||
T Consensus 310 ~sDh~p~~~~~K~~--~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl-~~~G~l~~G~~ADl 386 (451)
T PRK06189 310 SSDHSPCPPELKEG--DDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADF 386 (451)
T ss_pred ECCCCCCCHHHcCc--CCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCC-CCCCcccCCCcCCE
Confidence 99999997765531 25777765 88999999998777777899999999999999999999 56899999999999
Q ss_pred EEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCC
Q 009410 442 IIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505 (535)
Q Consensus 442 vvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~ 505 (535)
+|+|.+..+.++++++.+...|+||+|..+.++|.+|+++|++||++|+++. ...|++++++.
T Consensus 387 vi~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~tiv~G~~v~~~g~~~~-~~~G~~~~~~~ 449 (451)
T PRK06189 387 VLVDLDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDGEVFP-PPRGQLLRPSV 449 (451)
T ss_pred EEEcCCCCEEECHHHhhhcCCCCCcCCcEEEeEEEEEEECCEEEEECCEEcc-CCCCcEecCCC
Confidence 9999999999998889989999999999999999999999999999999887 45899999754
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=442.31 Aligned_cols=436 Identities=28% Similarity=0.401 Sum_probs=370.5
Q ss_pred CcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHH
Q 009410 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~ 130 (535)
|+++++|+|++|++.+....++|+|+||+|++|++... .+.++||++|++|+|||||.|+|+... +....+.+...
T Consensus 1 m~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~--~~~~~iD~~G~~v~Pg~iD~h~h~~~~--~~~~~e~~~~~ 76 (449)
T PRK08044 1 MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG--DAKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYETG 76 (449)
T ss_pred CCceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC--CCCeEEECCCCEEcCCeeccccccCCC--CccccccHHHH
Confidence 34678999999998766667899999999999987542 357899999999999999999999876 55557889999
Q ss_pred HHHHHhCCcEEEecccc-CCC-CChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecC
Q 009410 131 QAAALAGGTTMHIDFVI-PIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (535)
...+++.||||++||.. ..+ ....+.++...+.. ....+++.++.+.... ...++..+. +.|+.++|.|+.+.
T Consensus 77 ~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~-~~gv~~fk~~~~~~ 152 (449)
T PRK08044 77 TRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELD-EVGVVGFKCFVATC 152 (449)
T ss_pred HHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHH-HcCceEEEEEeccc
Confidence 99999999999999962 212 24556666555544 3467777766655432 345666665 67999999997653
Q ss_pred CC-------CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHH
Q 009410 208 GS-------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280 (535)
Q Consensus 208 ~~-------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (535)
+. ...+...+.+.++.+.+.|.++.+|+++........+.....|...+..|...+|..++...+.+.+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~ 232 (449)
T PRK08044 153 GDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAK 232 (449)
T ss_pred CcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHH
Confidence 21 23467788899999999999999999998876655555677788888888888999999999999999999
Q ss_pred hcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC
Q 009410 281 FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360 (535)
Q Consensus 281 ~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv 360 (535)
..+.++|+.|++.....+.+..+++.|..+++++++|+++++++.+.. .+..++++||+|...+++++|+++..|.
T Consensus 233 ~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~----~~~~~k~~PPlr~~~d~~aL~~~l~~G~ 308 (449)
T PRK08044 233 VAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE----IGTLAKCSPPIRDLENQKGMWEKLFNGE 308 (449)
T ss_pred HhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhC----CCCcEEEcCCCCChHHHHHHHHHHhCCC
Confidence 999999999999988889999999999999999999999999988754 2578899999999999999999999999
Q ss_pred eEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCC
Q 009410 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 437 (535)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk 437 (535)
+.+++|||.|++...+. .+|+.+|+ |++..++.++..+++.++++++++++++|.|||++||+ ++.|+|++|+
T Consensus 309 id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl-~~~G~i~~G~ 384 (449)
T PRK08044 309 IDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGK 384 (449)
T ss_pred ceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCC-CCCCcCCCCC
Confidence 99999999998876654 36777776 89999999998888888899999999999999999999 4479999999
Q ss_pred CccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEee
Q 009410 438 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502 (535)
Q Consensus 438 ~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~ 502 (535)
+|||+++|.+..|.++++++.++..|+||+|+.+.++|.+||++|++||++++.+..++.|++++
T Consensus 385 ~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 385 DADFVFIQPNSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred ccCEEEECCCCcEEECHHHccccCCCCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999998766666888764
|
|
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=441.41 Aligned_cols=438 Identities=30% Similarity=0.424 Sum_probs=367.9
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
|++|+|++|+++++...++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+... +....+++.+..++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~~~~~~iDa~G~~v~PG~ID~H~H~~~~--~~~~~e~~~~~s~a 78 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHINEP--GRTEWEGFETGTKA 78 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEeccEeeceeccCCC--CccccccHHHHHHH
Confidence 4799999999987777899999999999999865434568999999999999999999999865 45566778888999
Q ss_pred HHhCCcEEEeccccC--CCCChHHHHHHHHHHhcc-cccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC-
Q 009410 134 ALAGGTTMHIDFVIP--INGSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~- 209 (535)
++++||||++||... +.......++...+.... ..++++++.+.... ..++++++. +.|+.++|+++...+.
T Consensus 79 al~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~ei~~l~-~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 79 AAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG---NLDQLRPLD-EAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC---CHHHHHHHH-HcCCcEEEEEecccCCC
Confidence 999999999999621 122345555555554433 56666665543322 345566665 6799999998765332
Q ss_pred --CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEE
Q 009410 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (535)
Q Consensus 210 --~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (535)
...+.+.+.++++.+++.|+++.+|++...............|..++..+...+|...+...+.+++.++++.+.++|
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ih 234 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLH 234 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 235789999999999999999999999988777777666667777777777788999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCC
Q 009410 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (535)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD 367 (535)
+.|.++....+.++.+++.|..+++++++|+++++.+.+.. .+..+++.||+|...++.+++++++.|.+.+++||
T Consensus 235 i~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SD 310 (447)
T cd01315 235 IVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPD----GGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSD 310 (447)
T ss_pred EEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccC----CCCceEECCCCCChHHHHHHHHHHhCCceeEEeCC
Confidence 99999999889999999999999999999999999887753 35788999999999999999999999999999999
Q ss_pred CCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEE
Q 009410 368 HCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIF 444 (535)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvl 444 (535)
+.|.....+..+..+|+.++. |++..+..++..+++..+++++++++++|.|||+++|+++++|+|++|+.|||||+
T Consensus 311 h~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~ 390 (447)
T cd01315 311 HSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVW 390 (447)
T ss_pred CCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEE
Confidence 999887666533346766665 88888888887777788899999999999999999999767899999999999999
Q ss_pred cCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEee
Q 009410 445 NPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502 (535)
Q Consensus 445 d~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~ 502 (535)
|.+..+.++.+++.+...|+||+|..+.++|.+||++|++||++|+++..+ .|++++
T Consensus 391 d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~-~G~~~~ 447 (447)
T cd01315 391 DPEEEFTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEP-LGQLLL 447 (447)
T ss_pred cCCCCEEEcHHHccccCCCCCccCeEEeeeEEEEEECCEEEEECCeEccCC-CceEeC
Confidence 999999998888888899999999999999999999999999999999766 888874
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=439.96 Aligned_cols=433 Identities=30% Similarity=0.455 Sum_probs=365.9
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
+++|+|++|+++++...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +...++++.+..++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~ 77 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-GPAAKIIDAGGLVVFPGVVDTHVHINEP--GRTEWEGFETGTRA 77 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeccEeccccccCCC--CccccchHHHHHHH
Confidence 47899999999887778999999999999987532 3467899999999999999999999875 55567788888899
Q ss_pred HHhCCcEEEeccc-cCCC-CChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC-
Q 009410 134 ALAGGTTMHIDFV-IPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (535)
Q Consensus 134 ~l~~GvTtv~d~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~- 209 (535)
++++||||++||. +..+ ......++...+... ...++++++.+... +..+++..+. +.|+..+|+|+++.+.
T Consensus 78 ~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~i~~~~-~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 78 AAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP---YNLDDLRELD-EAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCC---CCHHHHHHHH-HCCCcEEEEEecccCCC
Confidence 9999999999996 2212 234445555544443 34666766544332 3355666666 7899999999865432
Q ss_pred --CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEE
Q 009410 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (535)
Q Consensus 210 --~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (535)
...+.+.+.++++.+++.|+++..|+++........+.+...|..++..+...+|..++...+.+++++++..+.++|
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vh 233 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVH 233 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 356789999999999999999999999887777776777888988888888889999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCC
Q 009410 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (535)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD 367 (535)
+.|.++.+..+.++.+++.|+.++++.++|+++++.+.+.. .+..+++.||+|...++.+++++++.|...+++||
T Consensus 234 i~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SD 309 (443)
T TIGR03178 234 VVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPD----GGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSD 309 (443)
T ss_pred EEeCCCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhhC----cCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCC
Confidence 99999998889999999999999999999999999887743 35678999999999999999999999999999999
Q ss_pred CCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEE
Q 009410 368 HCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIF 444 (535)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvl 444 (535)
|.|+....+. ...|+.+|. |++..++.++..++..++++++++++++|.|||+++|+ ++.|+|++|+.|||||+
T Consensus 310 h~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~-~~~G~l~~G~~Ad~vi~ 386 (443)
T TIGR03178 310 HSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFV 386 (443)
T ss_pred CCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcCCEEEE
Confidence 9998866552 135776766 88999998887777788899999999999999999999 56799999999999999
Q ss_pred cCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEe
Q 009410 445 NPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 501 (535)
Q Consensus 445 d~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~ 501 (535)
|.+..+.+++..+.+...|+||+|..+.++|.+||++|++||++|+++..+ .|+++
T Consensus 387 d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~-~g~~~ 442 (443)
T TIGR03178 387 DPDESYTLTPDDLYYRHKVSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAP-KGQLL 442 (443)
T ss_pred cCCCcEEEcHHHhhhcCCCCCcCCcEEeeEEEEEEECCEEEEECCeeccCC-CCccc
Confidence 998899999888889999999999999999999999999999999998755 67765
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=432.33 Aligned_cols=415 Identities=21% Similarity=0.272 Sum_probs=336.2
Q ss_pred cEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
+++|+|++|+++.+. ..++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ +....+++.+..
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~iDa~g~~vlPG~iD~H~H~~~~--g~~~~e~~~t~s 79 (425)
T PRK07627 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNADKTIDASGLIVCPGLVDLSARLREP--GYEYKATLESEM 79 (425)
T ss_pred eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCCCCCeEEECCCCEEeccEEeccccccCC--CccccCcHHHHH
Confidence 589999999987653 5789999999999998754323467899999999999999999999776 666788889999
Q ss_pred HHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeee-cCChhhHHHHHHHHHHcCCCEEEEEeecCC
Q 009410 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (535)
++++++||||+++|...... .....++....... ....++..+.... ....+...++..+. +.|+.++|.+ +
T Consensus 80 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~-~~G~~~fk~~----~ 154 (425)
T PRK07627 80 AAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELT-EAGCVGFSQA----N 154 (425)
T ss_pred HHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHH-hCCEEEEEcC----C
Confidence 99999999999998654332 23333333333222 2233333333332 22344566777776 6788888753 2
Q ss_pred CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEE
Q 009410 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (535)
Q Consensus 209 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (535)
....+...+.++++.+++.|.++.+|+++...... .....|......+...+|..+|..++.+++.+++..+.++|+
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~---~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi 231 (425)
T PRK07627 155 VPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRG---GVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHL 231 (425)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhC---CCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 23467888999999999999999999998744221 111122223334455689999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCC
Q 009410 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 289 ~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
.|.++...++.++.+++.|++|++++++||++++.+.+.. .+..++++||+|...+++++++++++|...+++|||
T Consensus 232 ~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~----~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDH 307 (425)
T PRK07627 232 ARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGY----FDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDH 307 (425)
T ss_pred EeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhc----cCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCC
Confidence 9999999999999999999999999999999999887743 346899999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEc
Q 009410 369 CAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld 445 (535)
+|+....+. .+|..+|. |++..+++++... ...+++++++++++|.|||+++|+ +.|+|++|+.||||++|
T Consensus 308 aP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~~~-~~~~i~~~~~l~~~t~~pA~~lg~--~~G~l~~G~~ADlvv~d 381 (425)
T PRK07627 308 TPVDDDEKL---LPFAEATPGATGLELLLPLTLKWA-DEAKVPLARALARITSAPARVLGL--PAGRLAEGAPADLCVFD 381 (425)
T ss_pred CCCCHHHcc---CCHhhCCCCceeHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhCC--CCCcccCCCcCCEEEEC
Confidence 999766654 37888886 8888888777544 456799999999999999999999 46999999999999999
Q ss_pred CCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 446 ~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
.+..|.++++++.+...|+||+|..+.++|.+||++|++||++
T Consensus 382 ~~~~~~v~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 382 PDAHWRVEPRALKSQGKNTPFLGYELPGRVRATLVAGQVAFER 424 (425)
T ss_pred CCCcEEEChhhccccCCCCCCcCCEeeeEEEEEEECCEEEeec
Confidence 9999999999999999999999999999999999999999986
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=424.43 Aligned_cols=408 Identities=24% Similarity=0.350 Sum_probs=344.8
Q ss_pred ccEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCC-CCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~-~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
.+++|+|++|+++.+. ..++|+|+||+|++|+++... +.+.++||++|++|+|||||+|+|+..+ +....+++.+
T Consensus 2 ~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~~iDa~G~~vlPG~ID~H~H~~~~--~~~~~e~~~s 79 (418)
T PRK07369 2 SNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEP--GFEERETLAS 79 (418)
T ss_pred CCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccCCCCCEEEECCCCEEecCEEecccccCCC--CcCCCccHHH
Confidence 4689999999986543 678999999999999876432 3467899999999999999999999877 6677889999
Q ss_pred HHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCC-hhhHHHHHHHHHHcCCCEEEEEeec
Q 009410 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAY 206 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (535)
..++++++||||++||.+..+. ...+.++...+... ...+++.++...+... ++...++..+. +.|+..+|.
T Consensus 80 ~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~-~~Gv~~f~~---- 154 (418)
T PRK07369 80 LAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELA-AAGVVGFTD---- 154 (418)
T ss_pred HHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHH-HCCCEEEEC----
Confidence 9999999999999999754333 45566665555543 4577888887775442 34566777765 678877762
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCE
Q 009410 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (535)
Q Consensus 207 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (535)
+....+...+.++++.+.+.|.++.+|+++....... +...|......+...+|..+|..++.+++.+++..+.++
T Consensus 155 -~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~ 230 (418)
T PRK07369 155 -GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNG---VMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPV 230 (418)
T ss_pred -CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcC---cccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcE
Confidence 1223467789999999999999999999988754322 233344445556667899999999999999999999999
Q ss_pred EEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
|+.|.++.+.++.++.+++.|+.|++++++||++++.+.+.. .+..++++||+|...+++++|+++++|...+++|
T Consensus 231 hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~----~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~S 306 (418)
T PRK07369 231 HLMRISTARSVELIAQAKARGLPITASTTWMHLLLDTEALAS----YDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAI 306 (418)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhc----cCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEc
Confidence 999999999999999999999999999999999999987743 2467899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEE
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvv 443 (535)
||+|++...+.. +|+.+|+ |++..++.+++.+++.++++++++++++|.|||++||+. .|+|++|++|||++
T Consensus 307 DHaP~~~~~K~~---~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi 381 (418)
T PRK07369 307 DHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELIL 381 (418)
T ss_pred CCCCCCHHHccC---CHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEE
Confidence 999999887753 6888876 999999999988888889999999999999999999994 49999999999999
Q ss_pred EcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEE
Q 009410 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 480 (535)
Q Consensus 444 ld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~ 480 (535)
+|.+..|.++.+++.+...|+||+|+.+.++|.+||+
T Consensus 382 ~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 382 FDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred EcCCCCEEECcccccCCCCCCCCCCCEeeeEEEEEEC
Confidence 9999999999999999999999999999999999985
|
|
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=423.13 Aligned_cols=417 Identities=22% Similarity=0.325 Sum_probs=343.3
Q ss_pred CcccEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCC---CCCCceEEecCCCEEeecccccccccccccCCCCchh
Q 009410 51 SSSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNIN---VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~---~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~ 125 (535)
|+.+++|+|++|+++++. .+++|+|+||+|++|++... .+.+.++||++|++|+|||||+|+|+... +....+
T Consensus 1 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~--~~~~~e 78 (429)
T PRK09059 1 MMRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRE 78 (429)
T ss_pred CCcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCC--Cchhhh
Confidence 456799999999997764 47899999999999987532 23457899999999999999999999765 555678
Q ss_pred hhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc-cccccceeeeeecC-ChhhHHHHHHHHHHcCCCEEEE
Q 009410 126 DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKF 202 (535)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~ 202 (535)
.+....+.++++||||+++|....+. ...+.++........ ..+++.++...... ..+...++..+. +.|+..++.
T Consensus 79 ~~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~~f~~ 157 (429)
T PRK09059 79 TIASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLR-AAGAVAFTD 157 (429)
T ss_pred hHHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHH-hcCcEEEec
Confidence 88888899999999999999754332 344556655555543 46788777766553 344566666665 667766652
Q ss_pred EeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc
Q 009410 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (535)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (535)
.+....+...+.++++.+++.|.++.+|+++........ ...|..+...+...+|..+|..++.+++.+++..
T Consensus 158 ----~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~---~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~ 230 (429)
T PRK09059 158 ----GRRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGV---MNEGLFASWLGLSGIPREAEVIPLERDLRLAALT 230 (429)
T ss_pred ----CCcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCC---cCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 122234667788999999999999999999876533111 1111112233445689999999999999999999
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeE
Q 009410 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ 362 (535)
Q Consensus 283 ~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~ 362 (535)
+.++|+.|.++....+.++.+++.|++|++++++||++++.+.+.. .+..++++||+|...++.++++.+.+|...
T Consensus 231 ~~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~----~~~~~kvnPPLR~~~d~~~L~~~l~~g~id 306 (429)
T PRK09059 231 RGRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLNENDIGE----YRTFFKLSPPLRTEDDRVAMVEAVASGTID 306 (429)
T ss_pred CCcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhc----cCCccEEcCCCCCHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999887743 346889999999999999999999999999
Q ss_pred EEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCc
Q 009410 363 LVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDA 439 (535)
Q Consensus 363 ~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~A 439 (535)
+++|||.|++...+.. +|+.+|+ |++..++.++ .++..++++++++++++|.|||++||+ + .|+|++|++|
T Consensus 307 ~i~sDh~p~~~~~K~~---~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~~~~~~~s~nPA~~~gl-~-~G~l~~G~~A 380 (429)
T PRK09059 307 IIVSSHDPQDVDTKRL---PFSEAAAGAIGLETLLAAAL-RLYHNGEVPLLRLIEALSTRPAEIFGL-P-AGTLKPGAPA 380 (429)
T ss_pred EEEeCCCCCCHHHCcC---ChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHHhCC-C-cCcccCCCcC
Confidence 9999999999887653 6887876 9999999888 467778899999999999999999999 3 5999999999
Q ss_pred cEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 440 DIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 440 Dlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
|||++|.+..|.++++++.++..|+||+|+.+.++|.+||++|++||+
T Consensus 381 Dlvl~d~~~~~~v~~~~~~s~~~~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 381 DIIVIDLDEPWVVDPEDLKSRSKNTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred CEEEECCCCCEEECcccCccCCCCCCCCCCEEeeEEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999999985
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=421.09 Aligned_cols=432 Identities=25% Similarity=0.357 Sum_probs=348.9
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHH
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~ 132 (535)
.+++|+|++|++++....++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+ +....+.+.+..+
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~ 79 (444)
T PRK09236 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQVHFREP--GLTHKGDIASESR 79 (444)
T ss_pred ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCCCCCeEEECCCCEECCCEEEcccccccC--cccccccHHHHHH
Confidence 45899999999976666789999999999998764333457899999999999999999998765 4455677888889
Q ss_pred HHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecC-CC
Q 009410 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GS 209 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~ 209 (535)
.++++||||++||....+. ...+.+....... ....++++++.+... +..+++..+. +.|+.++|+|.... +.
T Consensus 80 aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~e~~~l~-~~g~~g~k~~~~~~~~~ 155 (444)
T PRK09236 80 AAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATN---DNLDEIKRLD-PKRVCGVKVFMGASTGN 155 (444)
T ss_pred HHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCc---ccHHHHHHHH-HccCcEEEEEeccCCCC
Confidence 9999999999999754322 3344444434433 345677777664432 2355666665 56889999987532 22
Q ss_pred C-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHc-CCC-CcccccccCChhhHHHHHHHHHHHHHhcCCCE
Q 009410 210 F-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL-GIT-GPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (535)
Q Consensus 210 ~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (535)
. ..+.+.++++++ ..+.++.+|+++..........+... |.. ....|...+|..++..++.+++++++..+.++
T Consensus 156 ~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~~ 232 (444)
T PRK09236 156 MLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTRL 232 (444)
T ss_pred cccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCCE
Confidence 2 234556666654 44899999998876655444444333 532 44566667899999999999999999999999
Q ss_pred EEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
|+.|.++..+.+.+...+..|..++++.++|+++++++.+.. .+..++++||+|...++.++++++++|+++.+||
T Consensus 233 hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igt 308 (444)
T PRK09236 233 HVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYAR----LGNLIKCNPAIKTASDREALRQALADDRIDVIAT 308 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhc----cCceEEECCCCCCHHHHHHHHHHHhCCCCcEEEC
Confidence 999999999888888888889999999999999999887753 3578999999999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEE
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvv 443 (535)
||.|.....+.. +|..+|. +++..++.+++ .+..++++++++++++|.|||++||+ ++.|+|++|+.|||||
T Consensus 309 Dh~p~~~~~k~~---~~~~~~~G~~~~e~~l~~l~~-~v~~~~~~~~~~~~~~t~~pA~~lgl-~~~G~l~~G~~ADlvi 383 (444)
T PRK09236 309 DHAPHTWEEKQG---PYFQAPSGLPLVQHALPALLE-LVHEGKLSLEKVVEKTSHAPAILFDI-KERGFIREGYWADLVL 383 (444)
T ss_pred CCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHhcCCCHHHHHHHHHHhHHHhcCC-CCCCccccCCcCCEEE
Confidence 999987666543 6777776 77888888884 56667799999999999999999999 4579999999999999
Q ss_pred EcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 444 ld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
+|.+.++.++.+++.+...|+||+|..+.++|.+||++|++||++|+++... .|+++++
T Consensus 384 ~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~-~G~~~~~ 442 (444)
T PRK09236 384 VDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVESC-RGQRLEF 442 (444)
T ss_pred EcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECCEEccCc-CceEeec
Confidence 9999999999999999999999999999999999999999999999999766 8999984
|
|
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=418.02 Aligned_cols=427 Identities=26% Similarity=0.390 Sum_probs=339.9
Q ss_pred CcccEEEEccEEEcCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 51 SSSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~-~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
|+++++|+|++|+++++ ...++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+... +...+++++.
T Consensus 1 ~~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~~~~~vid~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~ 78 (438)
T PRK07575 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQVHFREP--GLEHKEDLFT 78 (438)
T ss_pred CcceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEcccEEEeeeccCCC--CCcCcchHHH
Confidence 35678999999998765 46789999999999999754323236899999999999999999998765 5668889999
Q ss_pred HHHHHHhCCcEEEeccccCCCC-ChHHHHHH-HHHHhcccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecC
Q 009410 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEA-YEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (535)
..+.++++||||++||....+. ...+.+.. .........++++++.+... +...++.. ..+..++|.|....
T Consensus 79 ~~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~---~~l~~l~~---~~~~~g~~~f~~~~ 152 (438)
T PRK07575 79 ASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP---DNLPELLT---ANPTCGIKIFMGSS 152 (438)
T ss_pred HHHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---cCHHHHHH---hhCCeEEEEEEeeC
Confidence 9999999999999999653322 23333433 33333456778877755542 22333332 23677888876322
Q ss_pred -CCC-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCC
Q 009410 208 -GSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (535)
Q Consensus 208 -~~~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (535)
+.. ..+...+++++. ..+.++..|+++........ ....|...+..|...+|..+|...+.+.+++++..+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~---~~~~~v~~h~e~~~l~~~~~--~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~ 227 (438)
T PRK07575 153 HGPLLVDEEAALERIFA---EGTRLIAVHAEDQARIRARR--AEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRR 227 (438)
T ss_pred CCCcccCcHHHHHHHHH---hCCCEEEEeCcChHHHHhhh--HhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCC
Confidence 111 123444455433 56889999999876433222 22345556666777789999999999999999999999
Q ss_pred EEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEe
Q 009410 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365 (535)
Q Consensus 286 ~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lg 365 (535)
+|+.|+++.+..+.+...+ +..++++++++|++++++.+.. .+..++++||+|...++.++++++++|++++++
T Consensus 228 lhi~HiSt~~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~----~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~ 301 (438)
T PRK07575 228 LHILHLSTAIEAELLRQDK--PSWVTAEVTPQHLLLNTDAYER----IGTLAQMNPPLRSPEDNEALWQALRDGVIDFIA 301 (438)
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEEchhhheeCHHHHhC----CCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEe
Confidence 9999999988877777554 4789999999999999988753 347899999999999999999999999999999
Q ss_pred CCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEE
Q 009410 366 TDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 442 (535)
Q Consensus 366 tD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlv 442 (535)
|||.|++...+.. +|+..|. |+++.++++++.. ..+++|++++++++|.|||++||+ ++.|+|++|++||||
T Consensus 302 sDh~p~~~~~k~~---~~~~~~~G~~g~e~~l~~l~~~~-~~~~lsl~~~~~~~s~npAk~lgl-~~~G~L~~G~~ADlv 376 (438)
T PRK07575 302 TDHAPHTLEEKAQ---PYPNSPSGMPGVETSLPLMLTAA-MRGKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLV 376 (438)
T ss_pred cCCCCCCHHHccC---CcccCCCCcccHHHHHHHHHHHH-hcCCCCHHHHHHHHhhhHHHHcCC-CCCCccCCCCcCCEE
Confidence 9999998777653 6777765 8899999999664 566799999999999999999999 456999999999999
Q ss_pred EEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEee
Q 009410 443 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502 (535)
Q Consensus 443 vld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~ 502 (535)
|+|.+.++.++.+++.+...|+||+|..+.++|..||++|++||++|+++. ++.|++++
T Consensus 377 i~D~~~~~~v~~~~~~s~~~~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~~-~~~G~~~~ 435 (438)
T PRK07575 377 LVDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVNT-EVRGQALT 435 (438)
T ss_pred EEcCCCCEEEchHHccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEcc-CCCceEee
Confidence 999999999999999999999999999999999999999999999999986 55899887
|
|
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=415.99 Aligned_cols=429 Identities=27% Similarity=0.367 Sum_probs=347.0
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
.++++|+|++|++++....++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +....+.+.+..
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~ID~HvH~~~~--~~~~~e~~~t~~ 80 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-ASAGEVIDCRGLHVLPGVIDSQVHFREP--GLEHKEDLETGS 80 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-CCCceEEECCCCEEccCEEeccccccCC--CCCccchHHHHH
Confidence 4678999999999877777999999999999986543 2346899999999999999999998766 566778899999
Q ss_pred HHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecC--
Q 009410 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-- 207 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-- 207 (535)
++++++||||+++|...... ...+.+....+... ...++++++......+. .++.++....|+.++|.|+++.
T Consensus 81 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~~ 157 (444)
T PRK09060 81 RAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSSTG 157 (444)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCCC
Confidence 99999999999999643322 44555555444443 36777777765443332 3444444345888899887542
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEE
Q 009410 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (535)
Q Consensus 208 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (535)
.....+...+.+++.. .+..+.+|+++....... ..+...| .+..|...+|..++...+.+++.+++..+.++|
T Consensus 158 ~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lh 231 (444)
T PRK09060 158 DLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLRVEG--DPSSHPVWRDEEAALLATRRLVRLARETGRRIH 231 (444)
T ss_pred CcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHHhcC--CcccccccCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 1223456667777654 488999999988765543 4444556 555666778999999999999999999999999
Q ss_pred EEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCccc-ccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW-LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
+.|.++.+.++.++..++ .+++++++|+++++.+. +.. .+..+++.||+|...++.++++++++|+..+++|
T Consensus 232 i~h~st~~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~----~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~s 304 (444)
T PRK09060 232 VLHVSTAEEIDFLADHKD---VATVEVTPHHLTLAAPECYER----LGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGS 304 (444)
T ss_pred EEeCCCHHHHHHHHHhCC---CeEEEeChHHhccCchhhccc----CCceEEEeCCCCCHHHHHHHHHHHhCCCccEEec
Confidence 999999877666654443 48999999999998876 432 3468899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEE
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvv 443 (535)
||.|+....+.. +|..+|. |++..+++++. .+..+.++++++++++|.|||++||+ +++|+|++|+.|||||
T Consensus 305 Dh~p~~~~~k~~---~~~~~~~G~~g~e~~~~l~~~-~v~~g~l~~~~~~~~~s~~pa~~~gl-~~~G~l~~G~~ADlvl 379 (444)
T PRK09060 305 DHAPHTLEEKAK---PYPASPSGMTGVQTLVPIMLD-HVNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTI 379 (444)
T ss_pred CCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHHhCC-CCCCcccCCCcCCEEE
Confidence 999998777643 6777765 88888888884 57777899999999999999999999 5679999999999999
Q ss_pred EcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCC
Q 009410 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505 (535)
Q Consensus 444 ld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~ 505 (535)
+|.+..+.++.+++.++..|+||+|..+.++|.+||++|++||++|+++. ...|+++++..
T Consensus 380 ~d~~~~~~v~~~~~~s~~~~sp~~g~~l~g~~~~tiv~G~~v~~~g~~~~-~~~G~~~~~~~ 440 (444)
T PRK09060 380 VDLKRRETITNEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVG-PPTGEPVRFLE 440 (444)
T ss_pred EcCCCCEEEChHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECCEEcc-CCCccCccccc
Confidence 99999999999999999999999999999999999999999999999997 45899988654
|
|
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=418.67 Aligned_cols=427 Identities=28% Similarity=0.441 Sum_probs=348.0
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHH
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~ 132 (535)
.+++|+|++|++......++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+... +....+.+....+
T Consensus 2 ~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~--g~~~~e~~~~~~~ 79 (443)
T PRK02382 2 RDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHFREP--GYTHKETWYTGSR 79 (443)
T ss_pred ceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCCCCCeEEECCCCEEcCCEeeeeeeccCC--CCCchhhHHHHHH
Confidence 57999999999866667899999999999998654333457899999999999999999998766 5556678888899
Q ss_pred HHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEE-EEEeecC-C
Q 009410 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF-KFFMAYK-G 208 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i-k~~~~~~-~ 208 (535)
+++++||||++++....+. ...+.++....... ...++++++.... +..+++..+. +.|+..+ |++..+. +
T Consensus 80 aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~-~~gv~~~gkv~~~~~~~ 154 (443)
T PRK02382 80 SAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLW-ERGVFALGEIFMADSTG 154 (443)
T ss_pred HHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHH-hcCccceeEEEEEecCC
Confidence 9999999999999654333 34444554444433 3455665553322 1234566666 4577777 7776542 3
Q ss_pred CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEE
Q 009410 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (535)
Q Consensus 209 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (535)
....+.+.+.++++.+++.|+++.+|+++......... ...|...+..|...+|..+|..++.+++.+++..+.++|+
T Consensus 155 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~--~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi 232 (443)
T PRK02382 155 GMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAK--LLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHI 232 (443)
T ss_pred CcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhH--hhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34567889999999999999999999998765432221 1235555666667789999999999999999999999999
Q ss_pred EEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCC
Q 009410 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 289 ~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
.|.++...++.+..+ . |++++++|+++++++.+.. .+..++++||+|...++.++++.+++|...+++|||
T Consensus 233 ~h~ss~~~~~~i~~~---~--vt~ev~ph~L~l~~~~~~~----~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh 303 (443)
T PRK02382 233 AHISTPEGVDAARRE---G--ITCEVTPHHLFLSRRDWER----LGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDH 303 (443)
T ss_pred EECCCHHHHHHHHHC---C--cEEEEchhhhhcCHHHHhc----cCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCC
Confidence 999998876666543 2 8999999999999887743 236778999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEc
Q 009410 369 CAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld 445 (535)
.|++...+.. +|+.+|+ |++..++.++ ..+..++++++++++++|.|||++||+ ++.|+|++|+.|||+++|
T Consensus 304 ~P~~~~~K~~---~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~l~~~~~~~t~~pA~~~g~-~~~G~l~~G~~AD~vi~d 378 (443)
T PRK02382 304 APHTREEKDA---DIWDAPSGVPGVETMLPLLL-AAVRKNRLPLERVRDVTAANPARIFGL-DGKGRIAEGYDADLVLVD 378 (443)
T ss_pred CCCCHHHhcC---ChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcCCEEEEc
Confidence 9998877754 6888876 8899999988 577788899999999999999999999 478999999999999999
Q ss_pred CCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 446 ~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
.+..+.++.+.+.+...|+||+|.... .|.+||++|++||++|+++...+.|+++++
T Consensus 379 ~~~~~~~~~~~~~s~~~~sp~~g~~~~-~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~ 435 (443)
T PRK02382 379 PDAAREIRGDDLHSKAGWTPFEGMEGV-FPELTMVRGTVVWDGDDINAKRGRGEFLRG 435 (443)
T ss_pred CCCcEEEcHHHhcccCCCCCcCCCEec-eEEEEEECCEEEEECCEEecCCCCceEeCC
Confidence 999999999999999999999998766 899999999999999999987778999987
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=409.93 Aligned_cols=415 Identities=27% Similarity=0.416 Sum_probs=334.7
Q ss_pred cEEEEccEEEcCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHH
Q 009410 54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (535)
Q Consensus 54 ~~vi~n~~vi~~~~-~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~ 132 (535)
+++|+|++|+++++ ..+++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +....+.+....+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~~~~~~iD~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~~~ 78 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLHVHLREP--GQEDKETIETGSR 78 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeCCEEecccccCCC--CccccccHHHHHH
Confidence 48999999998753 468999999999999986522 3357899999999999999999998765 5567788888899
Q ss_pred HHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc-cccccceeeeeecC-ChhhHHHHHHHHHHcCCCEEEEEeecCCC
Q 009410 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (535)
.++++||||++|+....+. .....++...+.... ...++..+...... ..+..+++..+. ..|+..++ .++.
T Consensus 79 ~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~----~~~~ 153 (423)
T PRK09357 79 AAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALK-EAGVVAFS----DDGI 153 (423)
T ss_pred HHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHH-hCCcEEEE----CCCc
Confidence 9999999999999743332 445555555554433 34555554433221 223345555554 44554433 2344
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
...+.+.++++++.|+++|.++++|+++....... +...|......+...+|...+...+.+.+.+++..+.++|+.
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~---~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~ 230 (423)
T PRK09357 154 PVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGG---VMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHIC 230 (423)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcc---cccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 55688999999999999999999999876543321 222233333344456788999999999999999999999999
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
|++..+..+.++.+++.|+.+++++++++++++.+.+.. .+..+++.||+|...++.++++++++|+.+++||||.
T Consensus 231 H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~----~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~ 306 (423)
T PRK09357 231 HVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLT----YDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHA 306 (423)
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHHhC----cCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCC
Confidence 999999989999999999999999999999999987643 2467899999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcC
Q 009410 370 AFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 446 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~ 446 (535)
|.+...+.. +|..+|. |++..++.++..++..++++++++++++|.|||+++|+++ |+|++|++|||+|+|.
T Consensus 307 p~~~~~k~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~--G~i~~G~~AD~~i~d~ 381 (423)
T PRK09357 307 PHAREEKEC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA--GPLAEGEPADLVIFDP 381 (423)
T ss_pred CCChHHccC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC--CccCCCCcCCEEEEcC
Confidence 988776643 5766665 8899999988777777789999999999999999999954 9999999999999999
Q ss_pred CCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 447 NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 447 ~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+.++.++++++.+...|+||+|..+.++|..||++|++||++
T Consensus 382 ~~~~~v~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 382 EAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred CCCEEEchhhcccCCCCCCCcCCEEeeEEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999975
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=404.57 Aligned_cols=379 Identities=21% Similarity=0.318 Sum_probs=314.8
Q ss_pred EEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-
Q 009410 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING- 151 (535)
Q Consensus 73 I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~- 151 (535)
|+|+||||++|+++. .+.++||++|++|+|||||+|+|+..+ +.. .+++.+..++++++||||++||.+..+.
T Consensus 1 i~I~dG~I~~i~~~~---~~~~viDa~g~~vlPG~ID~HvH~~~~--~~~-~e~~~t~s~aA~aGGvTtv~dmpnt~P~~ 74 (386)
T PRK08417 1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLKND--SLS-SKNLKSLENECLKGGVGSIVLYPDSTPAI 74 (386)
T ss_pred CEEECCEEEEecCCC---CCCeEEECCCCEEccCeeEEeeeeCCC--CcC-hhhHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 689999999998764 357899999999999999999999765 433 5889999999999999999999753332
Q ss_pred ChHHHHHHHHHHhcc---cccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcC
Q 009410 152 SLTAGFEAYEKKAKN---SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228 (535)
Q Consensus 152 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g 228 (535)
...+.++...+.... ..+++ .... ...+...++..+. +.|+..+|.+. ..+.+.+.++++.+++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~i~~l~-~~Gv~~~k~~~------~~~~~~l~~~~~~a~~~g 143 (386)
T PRK08417 75 DNEIALELINSAQRELPMQIFPS---IRAL-DEDGKLSNIATLL-KKGAKALELSS------DLDANLLKVIAQYAKMLD 143 (386)
T ss_pred CCHHHHHHHHHHhhccCCcEEEE---EEEE-CCCccHHHHHHHH-HCCCEEEECCC------CCCHHHHHHHHHHHHHcC
Confidence 233444443333222 12222 2233 2334467777776 77998887631 358899999999999999
Q ss_pred CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCC
Q 009410 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308 (535)
Q Consensus 229 ~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~ 308 (535)
.++..|+++...... .+...|......+...+|..+|..++.+++++++..+.++|+.|.++.+.++.++.+++.|+
T Consensus 144 ~~V~~HaEd~~~~~~---~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~ 220 (386)
T PRK08417 144 VPIFCRCEDSSFDDS---GVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGE 220 (386)
T ss_pred CEEEEeCCCHHHhhH---HHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC
Confidence 999999998765443 23445655666667779999999999999999999999999999999999999999999999
Q ss_pred cEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc
Q 009410 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (535)
Q Consensus 309 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 388 (535)
+|++++++||++++.+++.. .+..+|++||+|...+++++|+.+.+|...+++|||.|++...+.. +|+.+|.
T Consensus 221 ~vt~ev~ph~L~l~~~~~~~----~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~---~~~~a~~ 293 (386)
T PRK08417 221 KLLKEVSIHHLILDDSACEN----FNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL---AFDEAAF 293 (386)
T ss_pred CEEEEechHHHeeCHHHhcC----cCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhHCCC
Confidence 99999999999999987742 3467899999999999999999999999999999999998777653 6777776
Q ss_pred ---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCC
Q 009410 389 ---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV 465 (535)
Q Consensus 389 ---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p 465 (535)
|++..+++++..++..++++++++++++|.|||++||+. + |+|++|+.|||+++|.+..+.++. .|+|
T Consensus 294 G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~-~-G~l~~G~~ADlvi~d~~~~~~~~~-------~~~p 364 (386)
T PRK08417 294 GIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLN-S-GEIEVGKEADLVLFDPNESTIIDD-------NFSL 364 (386)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCC-C-CccCCCCcCCEEEEcCCCCeEeCC-------CCCC
Confidence 899999999988888888999999999999999999994 4 999999999999999998888863 5899
Q ss_pred CCCeeEeeEEEEEEECCEEEEE
Q 009410 466 YEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 466 ~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
|+|..+.++|..||++|++||+
T Consensus 365 ~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 365 YSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred ccCCEEeccEEEEEECCEEEeC
Confidence 9999999999999999999974
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=394.70 Aligned_cols=403 Identities=28% Similarity=0.405 Sum_probs=332.4
Q ss_pred ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEecccc
Q 009410 68 QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI 147 (535)
Q Consensus 68 ~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~ 147 (535)
+..++|+|+||||++|++.. .+.+.++||++|++|+|||||+|+|+... +....+++....+.++++||||++++..
T Consensus 3 ~~~~~v~I~~g~I~~i~~~~-~~~~~~~ida~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~~~~~GvTtv~~~~~ 79 (411)
T TIGR00857 3 ETEVDILVEGGRIKKIGKLR-IPPDAEVIDAKGLLVLPGFIDLHVHLRDP--GEEYKEDIESGSKAAAHGGFTTVADMPN 79 (411)
T ss_pred eEEEEEEEECCEEEEeeccC-CCCCCeEEECCCCEEecCEEEcccCCCCC--CCccHhHHHHHHHHHHhCCeEEEEEecC
Confidence 35689999999999997522 23456899999999999999999999754 4456788888899999999999999865
Q ss_pred CCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCCh-hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHH
Q 009410 148 PING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDE-VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRC 224 (535)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a 224 (535)
..+. ...+.++...+... ...+++.++.+...... +..+++.++. ..|+.+ ++|..+ +.+..+...+.++++.+
T Consensus 80 t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~g-~~f~~~-~~~~~~~~~l~~~~~~a 156 (411)
T TIGR00857 80 TKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELK-EAGAVG-RMFTDD-GSEVQDILSMRRALEYA 156 (411)
T ss_pred CCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHH-HCCcEE-EEEEeC-CcccCCHHHHHHHHHHH
Confidence 3332 45556665555543 35677877777665432 2355666665 567777 223322 22346889999999999
Q ss_pred HhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHH
Q 009410 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR 304 (535)
Q Consensus 225 ~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 304 (535)
+++|+++.+|+++....... +...|...+..|...+|..+|..++.+++.+++..+.++|+.|+++.+.++.+..++
T Consensus 157 ~~~g~~v~iH~E~~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~ 233 (411)
T TIGR00857 157 AIAGVPIALHAEDPDLIYGG---VMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAK 233 (411)
T ss_pred HHcCCEEEEecCCHHHHhhh---hhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHH
Confidence 99999999999987654433 344566667778888999999999999999999999999999999999999999999
Q ss_pred HcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcc
Q 009410 305 KAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFR 384 (535)
Q Consensus 305 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~ 384 (535)
+.|+.|++++++|+++++.+.+.. .+..++++||+|...++.++++++++|...+++|||.|+....+.. +|.
T Consensus 234 ~~g~~v~~ev~ph~L~~~~~~~~~----~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~---~~~ 306 (411)
T TIGR00857 234 SQGIKITAEVTPHHLLLSEEDVAR----LDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EFA 306 (411)
T ss_pred HcCCcEEEeechhhheecHHHHhC----CCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccC---CHh
Confidence 999999999999999999987753 3478999999999999999999999999999999999988766543 576
Q ss_pred cCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccC
Q 009410 385 KIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461 (535)
Q Consensus 385 ~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~ 461 (535)
.+|. |++..++.++. .+..++++++++++++|.|||+++|+++ .|+|++|+.|||+++|.+..+.++.+++.+..
T Consensus 307 ~~~~G~~g~e~~~~~~~~-~~~~~~~~~~~~~~~~t~~pa~~~g~~~-~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~ 384 (411)
T TIGR00857 307 AAPPGIPGLETALPLLLQ-LLVKGLISLKDLIRMLSINPARIFGLPD-KGTLEEGNPADITVFDLKKEWTINAETFYSKA 384 (411)
T ss_pred hCCCCceeHHHHHHHHHH-HHHhCCCCHHHHHHHHhHHHHHHhCCCC-CCccCCCCcCCEEEEcCCCCEEEchHHCccCC
Confidence 6766 88888888884 4445579999999999999999999954 49999999999999999999999999999999
Q ss_pred CCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 462 DTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 462 ~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
.|+||+|..+.++|.+|+++|++||+|
T Consensus 385 ~~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 385 KNTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred CCCCcCCCEEEeEEEEEEECCEEEecC
Confidence 999999999999999999999999975
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=391.12 Aligned_cols=398 Identities=21% Similarity=0.300 Sum_probs=319.2
Q ss_pred EEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHh
Q 009410 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALA 136 (535)
Q Consensus 57 i~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~ 136 (535)
|.| +++..+....++|+|+||+|++|+++.. +.++||++| +|+|||||+|+|+..+ |....+++.+..+++++
T Consensus 3 ~~~-~~~~~~~~~~~di~I~dGkI~~i~~~~~---~~~~ida~g-~vlPG~ID~HvH~r~p--g~~~ked~~s~s~AAaa 75 (409)
T PRK01211 3 ICG-NFYYKGKFDYLEIEVEDGKIKSIKKDAG---NIGKKELKG-AILPAATDIHVHFRTP--GETEKEDFSTGTLSAIF 75 (409)
T ss_pred eec-eeEEcCcEEEEEEEEECCEEEEecCCCC---CceEEEecc-EEcCCeEEeeeccCCC--CCcccCcHHHHHHHHHc
Confidence 455 4444445667899999999999987542 468999999 9999999999999988 78889999999999999
Q ss_pred CCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCH
Q 009410 137 GGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214 (535)
Q Consensus 137 ~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~ 214 (535)
+||||++||....+. ...+.++...+... ...++++++......+. + +. +.|+.++|+|+.+... ....
T Consensus 76 GGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~----~---~~-~~g~~~~k~f~~~~~~-~~~~ 146 (409)
T PRK01211 76 GGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----L---IL-DERSIGLKVYMGGTTN-TNGT 146 (409)
T ss_pred CCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh----h---HH-hccCcEEEEEcCCCcC-CCcc
Confidence 999999999754322 45566665555553 45788888776532221 1 22 4588899998653210 0000
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCH
Q 009410 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (535)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 294 (535)
......++.+.+.|.++.+|+++......... ..+ ....|...+|..+|..++.+++.++.. ++|+.|.++.
T Consensus 147 ~~~~~~l~~~~~~g~~v~~H~E~~~l~~~~~~---~~~--~~~~~~~~rP~~aE~~ai~~~~~la~~---~~hi~HvSt~ 218 (409)
T PRK01211 147 DIEGGEIKKINEANIPVFFHAELSECLRKHQF---ESK--NLRDHDLARPIECEIKAVKYVKNLDLK---TKIIAHVSSI 218 (409)
T ss_pred ccCHHHHHHHHccCCEEEEeccChHHhhhhhh---Ccc--hHhhCCCCCCHHHHHHHHHHHHHHhCC---CcEEEEecCh
Confidence 11223446666889999999998765443211 111 223455668999999999999999876 5899999998
Q ss_pred HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChh
Q 009410 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374 (535)
Q Consensus 295 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~ 374 (535)
+.. .+|++++++||++++.+.. .+..++++||+|...+++++|+.+.+|...+++|||+|+...
T Consensus 219 ~~~----------~~vt~Ev~phhL~l~~~~~------~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~ 282 (409)
T PRK01211 219 DVI----------GRFLREVTPHHLLLNDDMP------LGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEE 282 (409)
T ss_pred hhc----------CceEEEecHHHHccccccc------cCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChh
Confidence 753 2799999999999998751 347899999999999999999999999999999999999877
Q ss_pred hhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCcee
Q 009410 375 QKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 451 (535)
Q Consensus 375 ~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~ 451 (535)
++ .+|+.+|+ |+++.+++++ .++.++++|++++++..|.|||++||+ + .|+|++|++|||||+|.+..|.
T Consensus 283 eK----~~~~~a~~G~~gle~~lpl~~-~~v~~~~isl~~~v~~~s~nPAki~gl-~-kG~l~~G~~ADlvi~D~~~~~~ 355 (409)
T PRK01211 283 DK----QEFEYAKSGIIGVETRVPLFL-ALVKKKILPLDVLYKTAIERPASLFGI-K-KGKIEEGYDADFMAFDFTNIKK 355 (409)
T ss_pred Hh----CCHhhCCCCCCcHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHhCC-C-CCcccCCCcCCEEEEcCCCeEE
Confidence 65 26777776 9999999998 578888899999999999999999999 3 6999999999999999999999
Q ss_pred eecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 452 ITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 452 i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
++.+.+.+...|+||+|..+. +|..||++|++||++|+++..+ .|+++++
T Consensus 356 v~~~~~~s~~~~spf~G~~~~-~v~~tiv~G~~v~~~~~~~~~~-~G~~~~~ 405 (409)
T PRK01211 356 INDKRLHSKCPVSPFNGFDAI-FPSHVIMRGEVVIDNYELISER-TGKFVPK 405 (409)
T ss_pred EChHHhhccCCCCCCCCCEec-cEEEEEECCEEEEECCEEcccc-CceEecc
Confidence 999999999999999999987 9999999999999999998766 8999986
|
|
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=376.21 Aligned_cols=390 Identities=25% Similarity=0.344 Sum_probs=307.3
Q ss_pred ccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCC
Q 009410 59 GGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138 (535)
Q Consensus 59 n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~G 138 (535)
+++|++.....+++|+|+||+|++|++. . ..+.++||++|++|+|||||+|+|+... +....+++.+..++++++|
T Consensus 3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~-~~~~~~iD~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~aa~~gG 78 (398)
T PRK04250 3 EGKFLLKGRIVEGGIGIENGRISKISLR-D-LKGKEVIKVKGGIILPGLIDVHVHLRDF--EESYKETIESGTKAALHGG 78 (398)
T ss_pred eEEEEECCcEEEEEEEEECCEEEEeeCC-C-CCCCeEEECCCCEEccCEEeccccccCC--CCCcHHHHHHHHHHHHhCC
Confidence 5678877766789999999999999741 1 1356899999999999999999999654 4567788899999999999
Q ss_pred cEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHH
Q 009410 139 TTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216 (535)
Q Consensus 139 vTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~ 216 (535)
|||++||.+..+. ...+.++...+... ...++++++. ....+ ..++..+. . ..+|.|+.+... ....+.
T Consensus 79 vTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~---~~~l~~l~-~---~~~k~f~~~~~~-~~~~~~ 149 (398)
T PRK04250 79 ITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAGN---CEKAEEIK-A---DFYKIFMGASTG-GIFSEN 149 (398)
T ss_pred eEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCCC---HHHHHHHH-h---hheEEEEecCCC-chhHHH
Confidence 9999999654332 45555655555543 4678888776 43322 23344432 1 246777654221 112222
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHH
Q 009410 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA 296 (535)
Q Consensus 217 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~ 296 (535)
+... .+ +.+..+.+|+++..... + ...+|..+|..++.+++.+++..+.++|+.|.++.+.
T Consensus 150 ~~~~--~~-~~~~~v~~H~E~~~~~~---------~-------~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~ 210 (398)
T PRK04250 150 FEVD--YA-CAPGIVSVHAEDPELIR---------E-------FPERPPEAEVVAIERALEAGKKLKKPLHICHISTKDG 210 (398)
T ss_pred HHHH--HH-hcCCeEEEEecChhhhh---------c-------ccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence 3222 22 23557999999876432 1 1247999999999999999999999999999999877
Q ss_pred HHHHHHHHHcCCc-EEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhh
Q 009410 297 MEEIAKARKAGQR-VIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQ 375 (535)
Q Consensus 297 ~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~ 375 (535)
.+.+ ++.|+. |++++++||++++.+.+ . .+..++++||+|...+++++|+.+.. ..+++|||.|++...
T Consensus 211 ~~~i---~~~g~~~vt~Ev~ph~L~l~~~~~-~----~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~sDHaP~~~~~ 280 (398)
T PRK04250 211 LKLI---LKSNLPWVSFEVTPHHLFLTRKDY-E----RNPLLKVYPPLRSEEDRKALWENFSK--IPIIASDHAPHTLED 280 (398)
T ss_pred HHHH---HHcCCCcEEEEeCHHHhccCHHHH-C----CCCceEEcCCCCCHHHHHHHHHhhcc--CCEEEcCCcccCHHH
Confidence 6655 446887 99999999999999877 2 35789999999999999999999964 799999999998777
Q ss_pred hhcCCCCcccCcc--hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeee
Q 009410 376 KAFGIDDFRKIPN--GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 453 (535)
Q Consensus 376 ~~~~~~~~~~~~~--g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~ 453 (535)
+... .++ |++..+++++ .++.++++|++++++++|.|||++||+ ++.| |++|++|||+|+|.+..+.++
T Consensus 281 k~~~------~~G~~g~e~~lpl~~-~~v~~~~lsl~~~v~~~t~npAk~lgl-~~~G-L~~G~~ADlvi~D~~~~~~v~ 351 (398)
T PRK04250 281 KEAG------AAGIPGLETEVPLLL-DAANKGMISLFDIVEKMHDNPARIFGI-KNYG-IEEGNYANFAVFDMKKEWTIK 351 (398)
T ss_pred hhcC------CCCcchHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHhCC-CCcC-ccCCCcCCEEEEcCCCcEEEC
Confidence 6421 123 8999999998 467788899999999999999999999 4579 999999999999999999999
Q ss_pred cCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceE
Q 009410 454 ARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKY 500 (535)
Q Consensus 454 ~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~ 500 (535)
.+++.+...|+||+|..+.++|.+||++|++||++|+++..+ .|++
T Consensus 352 ~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~~~g~~~~~~-~G~~ 397 (398)
T PRK04250 352 AEELYTKAGWTPYEGFKLKGKVIMTILRGEVVMEDDEIIGKP-RGVR 397 (398)
T ss_pred hhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEcCCC-CCeE
Confidence 999999999999999999999999999999999999998754 6765
|
|
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=355.61 Aligned_cols=372 Identities=21% Similarity=0.242 Sum_probs=294.6
Q ss_pred eeeEEEeCCEEEEeeCCCCCCCCceEEec-CCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccC
Q 009410 70 IADVYVEDGIVVAVQPNINVGDDVKVLDA-TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (535)
Q Consensus 70 ~~~I~I~~G~I~~Vg~~~~~~~~~~vID~-~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~ 148 (535)
+..|.|++|+|..|++.. +.++++||+ +|++|+|||||+|+|+..+ |....+++.++.++++++||||++||...
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~~~~~~id~~~G~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~~mPnt 88 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--SRCKPDLDLPQGTLILPGAIDLHVHLRGL--KLSYKEDVASGTSEAAYGGVTLVADMPNT 88 (392)
T ss_pred CceEEEeeeeeeeEeecc--CCCCceeecCCCCEEeCCEEEcccccCCC--CCcccccHHHHHHHHHhCCcEEEEECCCC
Confidence 578889999999998763 447889999 6999999999999999987 78889999999999999999999999754
Q ss_pred CCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHh
Q 009410 149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226 (535)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~ 226 (535)
.+. ...+.++...+... ...++++++.+.... .+++ . ..|..++|.|.+. ....+ +++.+.+
T Consensus 89 ~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el---~-~~~~~g~k~f~~~----~~~~~----~~~~~~~ 152 (392)
T PRK00369 89 IPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKV---D-KLPIAGYKIFPED----LEREE----TFRVLLK 152 (392)
T ss_pred CCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHH---H-HhhCceEEEECCC----CchHH----HHHHHHH
Confidence 332 45566666555553 467888887755321 1222 2 4477788887421 12233 3344445
Q ss_pred cCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHc
Q 009410 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKA 306 (535)
Q Consensus 227 ~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 306 (535)
++.++.+|+++....... +...+|..+|..++.++..+ .++|+.|.++.+. ++.+++.
T Consensus 153 ~~~~v~~HaE~~~l~~~~--------------~~~~rp~~aE~~ai~~~~~~-----~~lhi~HvSt~~~---v~~ak~~ 210 (392)
T PRK00369 153 SRKLKILHPEVPLALKSN--------------RKLRRNCWYEIAALYYVKDY-----QNVHITHASNPRT---VRLAKEL 210 (392)
T ss_pred hCCEEEEeCCCHHHhhcc--------------hhcccCHHHHHHHHHHHHHh-----CCEEEEECCCHHH---HHHHHHC
Confidence 558999999987653311 11236666777766666655 7899999999875 4556667
Q ss_pred CCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccC
Q 009410 307 GQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386 (535)
Q Consensus 307 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~ 386 (535)
| ++++++|||++++.+. +..++++||+|...+++++|+.+++ ..+++|||+|+....+.. +|..+
T Consensus 211 g--vt~Ev~pHhL~l~~~~--------~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~~---~f~~~ 275 (392)
T PRK00369 211 G--FTVDITPHHLLVNGEK--------DCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKLQ---PYEVC 275 (392)
T ss_pred C--CeEEechhHheeccCC--------CCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHccC---CHhhC
Confidence 6 7789999999998751 3568999999999999999999998 789999999998877643 68888
Q ss_pred cc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCC
Q 009410 387 PN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463 (535)
Q Consensus 387 ~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~ 463 (535)
|+ |++..+++++. ++..++++++++++++|.|||++||+. .|.|++|+.|||+++|.+ .|.+ +...++..|
T Consensus 276 ~~Gi~GlE~~lpll~~-~v~~~~lsl~~~v~~~s~nPA~ilgl~--~g~i~~G~~ADlvi~d~~-~~~~--~~~~sk~~~ 349 (392)
T PRK00369 276 PPGIAALSFTPPFIYT-LVSKGILSIDRAVELISTNPARILGIP--YGEIKEGYRANFTVIQFE-DWRY--STKYSKVIE 349 (392)
T ss_pred CCCCeeHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCC-ceeE--ccccccCCC
Confidence 77 89999999885 667788999999999999999999994 388999999999999987 5665 567889999
Q ss_pred CCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecC
Q 009410 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 504 (535)
Q Consensus 464 ~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~ 504 (535)
+||+|..+.++|.+||++|++||++++++...+.|++=+++
T Consensus 350 sp~~G~~l~G~v~~ti~~G~~v~~~~~~~~~~g~G~~~~~~ 390 (392)
T PRK00369 350 TPLDGFELKASVYATIVQGKLAYLEGEVFPVKGINPFGERK 390 (392)
T ss_pred CCCCCCEeeeEEEEEEECCEEEEECCeEecCCCCCCCCccc
Confidence 99999999999999999999999999999888888775554
|
|
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=348.08 Aligned_cols=355 Identities=30% Similarity=0.407 Sum_probs=292.5
Q ss_pred CCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeee
Q 009410 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (535)
Q Consensus 100 G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (535)
|++|+||+||+|+|+..+ |....+++.+..++++++||||++||....+. ...+.++...... ....++++++...
T Consensus 1 G~~vlPG~iD~HvH~r~p--g~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~ 78 (361)
T cd01318 1 GLLILPGVIDIHVHFREP--GLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV 78 (361)
T ss_pred CCEEecCeeEeeecCCCC--CCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence 789999999999999887 77789999999999999999999999754332 4555665555554 3457888887765
Q ss_pred ecCChhhHHHHHHHHHHcCCCEEEEEeecCC-CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009410 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (535)
... +++.++. +.|..++|.|..+.. ....+...+.++++.+. .++.+|+++..............+
T Consensus 79 ~~~-----~~l~~~~-~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~---- 145 (361)
T cd01318 79 TGS-----EDLEELD-KAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGES---- 145 (361)
T ss_pred cCh-----hhHHHHH-HhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhcc----
Confidence 432 3444544 557888998875422 22357888888888774 789999999876554444333222
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccce
Q 009410 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (535)
.|...+|..+|..++.+.+.+++..+.++|+.|.++.+.++.+..++ .+|++++++++++++.+.+.. .+..
T Consensus 146 -~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~~----~~~~ 217 (361)
T cd01318 146 -AHPRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLDVEDYDR----LGTL 217 (361)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHhC---CCeEEEeCHHHhhcCHHHHhc----CCCe
Confidence 55667899999999999999999999999999999998766666554 689999999999999887752 3468
Q ss_pred eEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHH
Q 009410 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYV 413 (535)
Q Consensus 337 ~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal 413 (535)
++++||+|...+++++++++++|.+.+++|||.|.....+.. +|+.+|. |++..++.++ .++..+++++++++
T Consensus 218 ~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~---~~~~a~~G~~g~e~~l~~~~-~~v~~~~l~l~~a~ 293 (361)
T cd01318 218 GKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRK---GYPAAPSGIPGVETALPLML-TLVNKGILSLSRVV 293 (361)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccC---ChhhCCCCCccHHHHHHHHH-HHHHcCCCCHHHHH
Confidence 999999999999999999999999999999999998776643 5777776 7788777777 46677789999999
Q ss_pred HHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 414 RLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 414 ~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
+++|.|||+++|+. ++|+|++|+.|||+|+|.+..|.++.+++.+...|+||+|+.+.++|.+||++|
T Consensus 294 ~~~t~nPA~~lgl~-~~G~i~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 294 RLTSHNPARIFGIK-NKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred HHHhHHHHHHhCCC-CCCccCCCCcCCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEeCc
Confidence 99999999999994 479999999999999999999999999999999999999999999999999998
|
This group contains the archeal members of the DHOase family. |
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=347.25 Aligned_cols=367 Identities=27% Similarity=0.384 Sum_probs=302.6
Q ss_pred ceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc-cccc
Q 009410 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMD 170 (535)
Q Consensus 93 ~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 170 (535)
.++||++|++|+||+||+|+|+... +....+++.+..++++.+||||++||....+. .....++........ ...+
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~--~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREP--GFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVR 79 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCC--CccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCcee
Confidence 5789999999999999999999877 55567889999999999999999999754332 455556655555433 4556
Q ss_pred cceeeeeecCCh-hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHH
Q 009410 171 YGFHMAITKWDE-VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (535)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 249 (535)
+.++.+...... +..+++..+. ..|+..+|.+ +....+...+.++++.+++.|.++.+|+++...... .+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~i~~l~-~~G~~~~k~~----~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~---~~~ 151 (374)
T cd01317 80 VLPIGALTKGLKGEELTEIGELL-EAGAVGFSDD----GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGG---GVM 151 (374)
T ss_pred EEEEEEEeeCCCcccHHHHHHHH-HCCcEEEEcC----CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhc---cCc
Confidence 666666554332 2366777766 6788888843 223467889999999999999999999987765432 122
Q ss_pred HcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCc
Q 009410 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (535)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 329 (535)
..|......+...+|..++...+.+++++++..+.++++.|+++.+.++.+..+++.|+.+++++++|+++++++.+..
T Consensus 152 ~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~- 230 (374)
T cd01317 152 NEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES- 230 (374)
T ss_pred cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhc-
Confidence 3344444455566888888889999999999999999999999998888999899999999999999999999988743
Q ss_pred CccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCC
Q 009410 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQ 406 (535)
Q Consensus 330 ~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ 406 (535)
.+..+++.||+|...++.++++++++|+.+++||||.|.+...++. +|+.++. |+++.+..+++.+++.+.
T Consensus 231 ---~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~~~~~~~ 304 (374)
T cd01317 231 ---YDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTLLVKGGL 304 (374)
T ss_pred ---cCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999999999988776643 5766665 889999999988888888
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEE
Q 009410 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 478 (535)
Q Consensus 407 ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v 478 (535)
++++++++++|.|||+++|+. .|+|++|++|||+++|.+.++.++.+++.+...|+||+|+.+.++|.+|
T Consensus 305 ~~~~~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~G~~l~g~~~~t 374 (374)
T cd01317 305 LTLPDLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFDGQKLKGRVLAT 374 (374)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCCCEEEChhhccccCCCCCCCCCEEeEEEEEC
Confidence 999999999999999999994 3999999999999999999999999999999999999999999998764
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=334.64 Aligned_cols=329 Identities=35% Similarity=0.482 Sum_probs=276.3
Q ss_pred CEEeecccccccccccccCCCC-chhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeee
Q 009410 101 KFVMPGGIDPHTHLAMEFMGSE-TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (535)
Q Consensus 101 ~~vlPGlID~H~H~~~~~~g~~-~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (535)
++|+||+||+|+|+..+ +.. ..+++.++.++++++||||++||....+. ...+.++...+.. ....++++++...
T Consensus 1 ~~vlPG~iD~HvH~r~p--g~~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~ 78 (337)
T cd01302 1 LLVLPGFIDIHVHLRDP--GGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGI 78 (337)
T ss_pred CEecCCeeEeeeccCCC--CCCCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEec
Confidence 57999999999999887 555 78999999999999999999999754332 3445555544444 3467888887766
Q ss_pred ecCChhhHHHHHHHHHHcCCCEEEEEeecCCCC--cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009410 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (535)
... +...++.++. +.|+.++|+|+.+.... ..+.+.+.++++.+.+.|.++.+|++
T Consensus 79 ~~~--~~~~el~~l~-~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E------------------- 136 (337)
T cd01302 79 GPG--DVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE------------------- 136 (337)
T ss_pred cCc--cCHHHHHHHH-HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH-------------------
Confidence 543 2456677766 68999999998654322 56889999999999999999999997
Q ss_pred cccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccc
Q 009410 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (535)
+.+.+++..+.++|+.|.++.+.++.++.+++.|++|+++++||+++++++.+.. .+.
T Consensus 137 ------------------r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~----~~~ 194 (337)
T cd01302 137 ------------------RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRL----NGA 194 (337)
T ss_pred ------------------HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhC----CCc
Confidence 2345566778999999999999999999999999999999999999999887742 347
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHH
Q 009410 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDY 412 (535)
Q Consensus 336 ~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~ea 412 (535)
.++++||+|...+++++++++++|...+++|||.|+....+..+ .+|+.+|+ |++..++.++..+++ .+++++++
T Consensus 195 ~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~-~~i~~~~~ 272 (337)
T cd01302 195 WGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVK-RGLSLETL 272 (337)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHh-cCCCHHHH
Confidence 88999999999999999999999999999999999987766432 35777776 889999988877665 46999999
Q ss_pred HHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEE
Q 009410 413 VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 478 (535)
Q Consensus 413 l~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v 478 (535)
++++|.|||+++|+. +.|+|++|+.|||+|+|.+..|.++++++.++..|+||+|+.+.++|.+|
T Consensus 273 ~~~~s~~pA~~~gl~-~~g~i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t 337 (337)
T cd01302 273 VEILSENPARIFGLY-PKGTIAVGYDADLVIVDPKKEWKVTAEEIESKADWTPFEGMEVTGKPVST 337 (337)
T ss_pred HHHHHHHHHHHcCCC-CCCccccCCcCCEEEEeCCCcEEEcHHHhcccCCCCCcCCcEEEEEEEEC
Confidence 999999999999995 46999999999999999999999999999999999999999999998765
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=346.12 Aligned_cols=395 Identities=19% Similarity=0.215 Sum_probs=288.2
Q ss_pred cccEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
.++++|+|++|+|+++. ..++|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|.... +
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~--~~~~~viD~~g~~v~PG~ID~H~H~~~~--~--------- 84 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAA--IEGDRTIDATGLVVAPGFIDLHAHGQSV--A--------- 84 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCC--CCCCeEEeCCCCEEecCeEeeeeCCCCC--c---------
Confidence 46799999999997764 4579999999999999753 2357899999999999999999997643 2
Q ss_pred HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee-------------------------------
Q 009410 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT------------------------------- 178 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 178 (535)
....++..||||++++.. ........++...+.+ ..++++++.+..
T Consensus 85 ~~~~~~~~GvTtvv~~~~-~~~p~~~~~~~~~~~~--~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (509)
T PRK09061 85 AYRMQAFDGVTTALELEA-GVLPVARWYAEQAGEG--RPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQER 161 (509)
T ss_pred cchhhccCCceeEEeecc-CCCCHHHHHHHHHhcC--CcceeehhcCcHHHHHHHhCCcccccccccccccccccccccC
Confidence 145668899999999831 1122333333332222 123443333221
Q ss_pred cCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009410 179 KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (535)
Q Consensus 179 ~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (535)
..+.+...++..+.+ +.|+.+++.+..|. +..+.+.+.++++.|+++|.++..|+++....
T Consensus 162 ~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~--p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~-------------- 225 (509)
T PRK09061 162 AATPAELAEILELLEQGLDEGALGIGIGAGYA--PGTGHKEYLELARLAARAGVPTYTHVRYLSNV-------------- 225 (509)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEecCCccC--CCCCHHHHHHHHHHHHHcCCEEEEEecCcccC--------------
Confidence 011344555666553 57999998755443 34589999999999999999999999765321
Q ss_pred cccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccC------HHHHHHHHHHHHcCCcEEeccccce--------Eee
Q 009410 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGQRVIGEPVVSG--------LVL 321 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~------~~~~~~~~~~~~~g~~v~~~~~~~~--------~~~ 321 (535)
....+...+.+++++++..+.++++.|++. ...++.++.+++.|+.|+++.+||+ +.+
T Consensus 226 --------~~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l 297 (509)
T PRK09061 226 --------DPRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFF 297 (509)
T ss_pred --------CchhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcchhhhhhccccc
Confidence 012345678999999999999999999998 7777889999999999999999999 666
Q ss_pred CcccccCcCcccccee---EE---cCCCCC-------------------------cccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 322 DDSWLWHSDFVTAAKY---VM---SPPIRA-------------------------SGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 322 ~~~~~~~~~~~~~~~~---~~---~p~~r~-------------------------~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
++++....+ ..+ ++ .||+|. ..+.+.++..++.+.. +++||+.|
T Consensus 298 ~~~~~~~~~----~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p 372 (509)
T PRK09061 298 DPGWLERMG----LGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMP 372 (509)
T ss_pred CHHHHHHhC----CCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc-eEecCCcc
Confidence 554443211 222 44 677766 4457788999998876 99999988
Q ss_pred CChhhhhcCCCCcccCcc---hHH------HHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHcC-----CCCCCccccC
Q 009410 371 FNSTQKAFGIDDFRKIPN---GIE------ERMHLVWDTMVES-GQISVTDYVRLTSTECARIFN-----VYPRKGAILV 435 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~---g~~------~~l~~~~~~~~~~-~~ls~~eal~~~T~~~A~~lg-----l~~~~GsI~~ 435 (535)
+....+. ..|.+.|. +.+ ..++..++.+++. ..+|++++++++|.+||++|| ++ +.|+|++
T Consensus 373 ~~~~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l~-~~G~i~~ 448 (509)
T PRK09061 373 WTWSDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAMR-RKGRLQA 448 (509)
T ss_pred ccccccc---cccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcccccccc-CCEeeCC
Confidence 7766543 25555554 334 4566777666665 359999999999999999999 74 4799999
Q ss_pred CCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCC
Q 009410 436 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505 (535)
Q Consensus 436 Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~ 505 (535)
|+.|||||+|++..... ..+.++ +.|+.| |++||++|++||++|+++....+|++|+++.
T Consensus 449 G~~ADlvv~D~~~~~~~--~~~~~~--~~~~~g------i~~v~v~G~~v~~~g~~~~~~~~G~~lr~~~ 508 (509)
T PRK09061 449 GADADIVVFDPETITDR--ATFEDP--NRPSEG------VRHVLVNGVPVVSNGELVRDARPGRPVRRPV 508 (509)
T ss_pred CCCcCEEEEchhhcccc--cccccc--CCCCCC------ceEEEECCEEEEECCEecCCCCCCeEecCCC
Confidence 99999999998753222 122222 455553 8899999999999999987778999998763
|
|
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=339.42 Aligned_cols=379 Identities=18% Similarity=0.226 Sum_probs=252.5
Q ss_pred EEEEccEEEcCCCc----eeeeEEEeCCEEEEeeCCCCC--CCCceEEecCCCEEeecccccccccccccCC--------
Q 009410 55 ILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------- 120 (535)
Q Consensus 55 ~vi~n~~vi~~~~~----~~~~I~I~~G~I~~Vg~~~~~--~~~~~vID~~G~~vlPGlID~H~H~~~~~~g-------- 120 (535)
.+|+|++|++++.. ++++|+|+||+|++|++.... +...++||+.|++|+|||||+|+|+++....
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~ 81 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNL 81 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccccccCeEEeCCCCEEccceeeeccCCCccccccccCCCCH
Confidence 57999999997752 578999999999999985432 2357899999999999999999999887321
Q ss_pred -------------CCchhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChh
Q 009410 121 -------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (535)
Q Consensus 121 -------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (535)
..+++..+. +..+++++||||++|+...........++...+.+.+..+...++........+
T Consensus 82 ~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~ 161 (419)
T PRK06687 82 HEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSETETTAE 161 (419)
T ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCcccHHH
Confidence 012222222 233458999999999864322234555666666655543322221111111222
Q ss_pred hHHHHHHHHHH---cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCCCcccc
Q 009410 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~ 259 (535)
..++..++.++ .+...+++++.++..+.++++.++++++.|+++|+++.+|+.+.. ......+ ..|...
T Consensus 162 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~---~~g~~~---- 234 (419)
T PRK06687 162 TISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILK---RYGKRP---- 234 (419)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HHCcCH----
Confidence 33334444322 234558888888888899999999999999999999999996543 2222222 122110
Q ss_pred cccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
+ +.+.-....+.++.+.|+...++ ++++++++.|+.++.||.++ +..+...
T Consensus 235 ------------~-~~l~~~g~l~~~~~~~H~~~~~~-~~~~~la~~g~~v~~~P~sn-------------~~l~~g~-- 285 (419)
T PRK06687 235 ------------L-AFLEELGYLDHPSVFAHGVELNE-REIERLASSQVAIAHNPISN-------------LKLASGI-- 285 (419)
T ss_pred ------------H-HHHHHcCCCCCCeEEEEEecCCH-HHHHHHHHcCCeEEECcHHh-------------hhhccCC--
Confidence 1 11222233456788999998887 88999999999999988752 2222221
Q ss_pred cCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHHHHHHHh
Q 009410 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTDYVRLTS 417 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~eal~~~T 417 (535)
.++++++++|+++++|||+...+.... .|. +++....++++.. ...+++.++|+++|
T Consensus 286 ----------~p~~~~~~~Gv~v~lGtD~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~aT 344 (419)
T PRK06687 286 ----------APIIQLQKAGVAVGIATDSVASNNNLD-----MFE------EGRTAALLQKMKSGDASQFPIETALKVLT 344 (419)
T ss_pred ----------CcHHHHHHCCCeEEEeCCCCCCCCChh-----HHH------HHHHHHHHhccccCCCccCCHHHHHHHHh
Confidence 228899999999999999744322211 111 2233333322211 12489999999999
Q ss_pred HHHHHHcCCCCCCccccCCCCccEEEEcCCC-ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 418 TECARIFNVYPRKGAILVGSDADIIIFNPNS-SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 418 ~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~-~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
.+||+++|+++++|+|++||.|||+++|.+. +...+ ..++.....|.+. ..+|..||++||+|+++|+++..+
T Consensus 345 ~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p---~~~~~~~lv~~~~--~~~v~~v~v~G~~v~~~g~~~~~d 418 (419)
T PRK06687 345 IEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQP---QENMLSHLVYAVK--SSDVDDVYIAGEQVVKQGQVLTVE 418 (419)
T ss_pred HHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCC---ccCHHHHhheeCC--CCCccEEEECCEEEEECCeEecCC
Confidence 9999999998789999999999999999763 32222 1222223344432 358999999999999999998764
|
|
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=331.36 Aligned_cols=379 Identities=20% Similarity=0.248 Sum_probs=251.9
Q ss_pred cEEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCC--CCCCceEEecCCCEEeecccccccccccccC-C------
Q 009410 54 KILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------ 120 (535)
Q Consensus 54 ~~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~--~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g------ 120 (535)
+++|+|++|++++. .++++|+|+||+|++||+... .+++.++||++|++|+|||||+|+|+++.+. |
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~ 81 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDML 81 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccccCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCC
Confidence 47999999998764 258899999999999998532 2335789999999999999999999976521 1
Q ss_pred --------------CCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceee-eeecCC
Q 009410 121 --------------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWD 181 (535)
Q Consensus 121 --------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 181 (535)
..+++..+ .+..+++++||||+.|+............+...+.+.+..+....+. ......
T Consensus 82 l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~ 161 (435)
T PRK15493 82 LQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDE 161 (435)
T ss_pred HHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCCCccH
Confidence 01122221 12345689999999998643322233445555566656433322211 111111
Q ss_pred hhhHHHHHHHHHH-cC-CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCCccc
Q 009410 182 EVVSDEMEVMVKE-KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEG 258 (535)
Q Consensus 182 ~~~~~~~~~~~~~-~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~~~ 258 (535)
.+..++...+.+. .+ .+.++..+.++..+.++++.++++.+.|+++|+++++|+.+. .......+ ..|...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~---~~g~~~--- 235 (435)
T PRK15493 162 KKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEA---QYGKRP--- 235 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCCCH---
Confidence 2223333333322 12 355788888888888999999999999999999999999544 32222221 122211
Q ss_pred ccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeE
Q 009410 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (535)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (535)
++ .+.-....+.++.+.|+...++ ++++++++.|+.++.||..+ +..+..+
T Consensus 236 -------------~~-~l~~~Gll~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~sn-------------~~l~~g~- 286 (435)
T PRK15493 236 -------------VE-YAASCGLFKRPTVIAHGVVLND-NERAFLAEHDVRVAHNPNSN-------------LKLGSGI- 286 (435)
T ss_pred -------------HH-HHHHcCCCCCCcEEEEeecCCH-HHHHHHHHcCCeEEEChHHH-------------HHHhcCc-
Confidence 11 1222234466788999999887 88999999999999998752 2122221
Q ss_pred EcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHHHHHHH
Q 009410 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTDYVRLT 416 (535)
Q Consensus 339 ~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~eal~~~ 416 (535)
.++++++++|+++++|||+...+...+ .|. ++++....++... ...++++++++++
T Consensus 287 -----------~p~~~~~~~Gv~v~lGtD~~~~~~~~d-----~~~------~~~~a~~~~~~~~~~~~~~~~~~~l~~a 344 (435)
T PRK15493 287 -----------ANVKAMLEAGIKVGIATDSVASNNNLD-----MFE------EMRIATLLQKGIHQDATALPVETALTLA 344 (435)
T ss_pred -----------ccHHHHHHCCCeEEEccCccccCCCcC-----HHH------HHHHHHHHHhhccCCCCcCCHHHHHHHH
Confidence 238899999999999999754322211 122 3444444443332 2469999999999
Q ss_pred hHHHHHHcCCCCCCccccCCCCccEEEEcCCC-ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 417 STECARIFNVYPRKGAILVGSDADIIIFNPNS-SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 417 T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~-~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
|.+||+++|++ +.|+|++||.||||++|.+. +...+..++.+. ..|.+. ..+|..||++|++|+++|+++..+
T Consensus 345 T~~gA~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~p~~d~~~~---lv~~~~--~~~V~~v~V~G~~v~~~g~~~~~d 418 (435)
T PRK15493 345 TKGAAEVIGMK-QTGSLEVGKCADFITIDPSNKPHLQPADEVLSH---LVYAAS--GKDISDVIINGKRVVWNGECKTLD 418 (435)
T ss_pred hHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCCCCcCCccChHHh---EEEeCC--CCCccEEEECCEEEEECCeECCCC
Confidence 99999999995 58999999999999999743 323333333322 233221 247999999999999999999876
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=325.26 Aligned_cols=356 Identities=22% Similarity=0.254 Sum_probs=256.5
Q ss_pred cEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 54 ~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
+++|+|++|+++.+ ...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... ... ....
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~iD~H~H~~~~--~~~-----~~~~ 72 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-TSAREVIDAAGLVVAPGFIDVHTHYDGQ--VFW-----DPDL 72 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-CCCCeEEECCCCEEccCEeeeeecCCcc--ccc-----Ccch
Confidence 47899999999865 367899999999999987543 2357899999999999999999999765 211 1226
Q ss_pred HHHHhCCcEEEeccccC---CCCCh------H-----------------HHHHHHHHHh-cc-cccccc---eeeeee--
Q 009410 132 AAALAGGTTMHIDFVIP---INGSL------T-----------------AGFEAYEKKA-KN-SCMDYG---FHMAIT-- 178 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~---~~~~~------~-----------------~~~~~~~~~~-~~-~~~~~~---~~~~~~-- 178 (535)
+.++.+||||++++... ..... . +.++.+.+.. .. ..+++. ++....
T Consensus 73 ~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~ 152 (415)
T cd01297 73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRA 152 (415)
T ss_pred hhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHH
Confidence 67899999999987431 11100 0 2223333333 22 355655 443332
Q ss_pred -------cCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH
Q 009410 179 -------KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248 (535)
Q Consensus 179 -------~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 248 (535)
..+.+..+++..+.+ +.|+.++|.+..|......+.+.+.++++.|+++|.++.+|+++..
T Consensus 153 ~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------- 223 (415)
T cd01297 153 VMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------- 223 (415)
T ss_pred HhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc---------
Confidence 123345566666642 4799999987766422356899999999999999999999998653
Q ss_pred HHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHH---------HHHHHHHHHcCCcEEeccccceE
Q 009410 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---------MEEIAKARKAGQRVIGEPVVSGL 319 (535)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~---------~~~~~~~~~~g~~v~~~~~~~~~ 319 (535)
..+...+.+++++++..+.++++.|+++... .+.++.+++.|++|+++++|+++
T Consensus 224 -----------------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~ 286 (415)
T cd01297 224 -----------------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGA 286 (415)
T ss_pred -----------------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 1234668888999999999999999998877 78888899999999999888655
Q ss_pred eeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHH
Q 009410 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWD 399 (535)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 399 (535)
.+ ...++.+++. ..++++||+.+.+.. +...+ + .+..++.
T Consensus 287 ~~---------------------------~~~~~~l~~~-~~~~i~SDh~~~~~~--------~~~~~-~---~~~~~l~ 326 (415)
T cd01297 287 GS---------------------------EDDVRRIMAH-PVVMGGSDGGALGKP--------HPRSY-G---DFTRVLG 326 (415)
T ss_pred Cc---------------------------HHHHHHHHcC-CCceeeeCCCcCCCC--------Ccchh-C---CHHHHHH
Confidence 32 1346667766 899999999885310 11011 1 1444554
Q ss_pred HHHhcC-CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEE
Q 009410 400 TMVESG-QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 478 (535)
Q Consensus 400 ~~~~~~-~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v 478 (535)
..+... .++++++++++|.|||++||+. ++|+|++|+.|||||+|.+.....+. +.++... ...|.+|
T Consensus 327 ~~~~~~~~~~~~~~~~~~t~~pA~~~gl~-~~G~l~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~--~~~v~~v 395 (415)
T cd01297 327 HYVRERKLLSLEEAVRKMTGLPARVFGLA-DRGRIAPGYRADIVVFDPDTLADRAT--------FTRPNQP--AEGIEAV 395 (415)
T ss_pred HHhcccCCCCHHHHHHHHHHHHHHHhCCC-CCceeCCCCCCCEEEEcccccccccc--------hhhhccC--CCCceEE
Confidence 444333 4999999999999999999995 56999999999999999886544432 1122111 2369999
Q ss_pred EECCEEEEECCeeccc
Q 009410 479 IAGGRVVWENDELNVV 494 (535)
Q Consensus 479 ~~~Gr~V~~~~~~~~~ 494 (535)
|++|++||++++++..
T Consensus 396 iv~G~~v~~~~~~~~~ 411 (415)
T cd01297 396 LVNGVPVVRDGAFTGA 411 (415)
T ss_pred EECCEEEEECCEECCC
Confidence 9999999999998863
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=328.39 Aligned_cols=372 Identities=26% Similarity=0.348 Sum_probs=245.0
Q ss_pred EEEEccEEEcCC---CceeeeEEEeCCEEEEeeCCCCCC--CCceEEecCCCEEeecccccccccccccC-CC-------
Q 009410 55 ILIKGGTVVNAH---HQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS------- 121 (535)
Q Consensus 55 ~vi~n~~vi~~~---~~~~~~I~I~~G~I~~Vg~~~~~~--~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~------- 121 (535)
++|+|++|++++ ..++++|+|+||||++|++..+.+ .+.++||++|++|+|||||+|+|+..... +.
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~ 80 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLM 80 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCccccccCCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHH
Confidence 479999999975 346899999999999999865432 46889999999999999999999875311 11
Q ss_pred -------------CchhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee---cCC
Q 009410 122 -------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT---KWD 181 (535)
Q Consensus 122 -------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 181 (535)
.++++++. .+..++++||||++|+..... ....+.....+.+....+....... ...
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~ 157 (411)
T cd01298 81 EWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP---DAVAEAAEELGIRAVLGRGIMDLGTEDVEET 157 (411)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch---HHHHHHHHHhCCeEEEEcceecCCCcccccH
Confidence 12233332 334467899999999865432 2333334344444333222211110 011
Q ss_pred hhhHHHHHHHHHH---cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCCCcc
Q 009410 182 EVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPE 257 (535)
Q Consensus 182 ~~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~ 257 (535)
.+..++..++.++ .|.+.+|+++..++....+++.+.++++.|+++|+++.+|+.+.. ......+ ..|...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~~~~~-- 232 (411)
T cd01298 158 EEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLE---KYGKRP-- 232 (411)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHH---HhCCCH--
Confidence 2233344443322 247788988887766678899999999999999999999985442 2222221 112111
Q ss_pred cccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
+..+.+ ....+.++.+.|+....+ +.++++++.|+.++.||..+. ..+..
T Consensus 233 --------------~~~~~~-~~~~~~~~~i~H~~~l~~-~~~~~l~~~gi~~~~~p~~~~-------------~~~~~- 282 (411)
T cd01298 233 --------------VEYLEE-LGLLGPDVVLAHCVWLTD-EEIELLAETGTGVAHNPASNM-------------KLASG- 282 (411)
T ss_pred --------------HHHHHH-cCCCCCCeEEEEecCCCH-HHHHHHHHcCCeEEEChHHhh-------------hhhhC-
Confidence 111111 122356778899988877 889999999998888876421 11111
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTDYVRL 415 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~eal~~ 415 (535)
. .++++++++|+++++|||+.......+ +|. +..+......... ..+++++++|++
T Consensus 283 --~---------~~~~~~~~~Gv~~~~GsD~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~al~~ 340 (411)
T cd01298 283 --I---------APVPEMLEAGVNVGLGTDGAASNNNLD-----MFE------EMRLAALLQKLAHGDPTALPAEEALEM 340 (411)
T ss_pred --C---------CCHHHHHHCCCcEEEeCCCCccCCCcC-----HHH------HHHHHHHHhccccCCCCcCCHHHHHHH
Confidence 1 228899999999999999754321111 111 2222222211111 125999999999
Q ss_pred HhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 416 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 416 ~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
+|.|||+++|++ ++|+|++||.|||||+|.+.++.++.+++.+...+... ..+|..||++|++||++|+++
T Consensus 341 ~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~G~~v~~~~~~~ 411 (411)
T cd01298 341 ATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHLVYSAN-----GGDVDTVIVNGRVVMEDGELL 411 (411)
T ss_pred HHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHheEecC-----CCCeeEEEECCEEEEECCEeC
Confidence 999999999997 78999999999999999988777665555444323222 358999999999999999874
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=324.21 Aligned_cols=379 Identities=22% Similarity=0.294 Sum_probs=243.3
Q ss_pred cEEEEccEEEcCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CCC-------
Q 009410 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSE------- 122 (535)
Q Consensus 54 ~~vi~n~~vi~~~~---~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~~------- 122 (535)
+++|+|++|+++++ .++++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+...+. +..
T Consensus 2 ~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~ 81 (445)
T PRK07228 2 TILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLD 81 (445)
T ss_pred eEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccCcCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHH
Confidence 48999999999774 4689999999999999986543336889999999999999999999986521 110
Q ss_pred -------------chhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccc-----cceee--eee
Q 009410 123 -------------TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD-----YGFHM--AIT 178 (535)
Q Consensus 123 -------------~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~ 178 (535)
++++.. .....++.+||||++|+..... ....++.....+.+.... ++... ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~~--~~~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~ 159 (445)
T PRK07228 82 WLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVHH--TDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ 159 (445)
T ss_pred HHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEccccccC--hHHHHHHHHHcCCeEEEecceecCCcCCCcccc
Confidence 111111 2233457999999999864321 234445555444442221 11110 000
Q ss_pred cCChhhHHHHHHHHHH-cCCC--EEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009410 179 KWDEVVSDEMEVMVKE-KGIN--SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (535)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~g~~--~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (535)
....+..++...+++. .|.. .+...+.+.....++++.++++++.|+++|+++++|+.+.......... ..|...
T Consensus 160 ~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~--~~g~~~ 237 (445)
T PRK07228 160 EDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEE--ETGMRN 237 (445)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH--HhCCCH
Confidence 1112233344444422 2332 3333334445556789999999999999999999999544322111111 123211
Q ss_pred cccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccc
Q 009410 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (535)
+. .+.-....+.++.+.|+...+. +.++++++.|+.++.||..+. ..+.
T Consensus 238 ----------------~~-~l~~~g~~~~~~~l~H~~~~~~-~~~~~~~~~g~~v~~~P~~~~-------------~~~~ 286 (445)
T PRK07228 238 ----------------IH-YLDEVGLTGEDLILAHCVWLDE-EEREILAETGTHVTHCPSSNL-------------KLAS 286 (445)
T ss_pred ----------------HH-HHHHCCCCCCCcEEEEEecCCH-HHHHHHHHcCCeEEEChHHhh-------------hccc
Confidence 11 1111223456889999998776 788999999999998886421 1111
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHHHH
Q 009410 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTDYV 413 (535)
Q Consensus 336 ~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~eal 413 (535)
. ..+++++++.|+++++|||+.+...... +|. +..+...+++... ...++++++|
T Consensus 287 ~------------~~p~~~~~~~Gv~v~lGtD~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~s~~~al 343 (445)
T PRK07228 287 G------------IAPVPDLLERGINVALGADGAPCNNTLD-----PFT------EMRQAALIQKVDRLGPTAMPARTVF 343 (445)
T ss_pred c------------cCcHHHHHHCCCeEEEcCCCCccCCCcc-----HHH------HHHHHHHHhhhccCCCcccCHHHHH
Confidence 1 1338999999999999999765432211 222 2233322322211 1358999999
Q ss_pred HHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecC--CccccCCCCCCCCeeEeeEEEEEEECCEEEEECCee
Q 009410 414 RLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITAR--SHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 491 (535)
Q Consensus 414 ~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~--~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~ 491 (535)
+++|.|||+++|+++++|+|++||.|||||+|.+.+...+.+ ++.....+... ..+|..||++|++||++|++
T Consensus 344 ~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~~~~~~~~~~~~~-----~~~v~~v~v~G~~v~~~g~~ 418 (445)
T PRK07228 344 EMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHGVDVLSHLVYAAH-----GSDVETTMVDGKIVMEDGEL 418 (445)
T ss_pred HHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcccCHHHHhheeCC-----CCCeeEEEECCEEEEECCeE
Confidence 999999999999988899999999999999998876544432 21111111111 35799999999999999999
Q ss_pred cccC
Q 009410 492 NVVP 495 (535)
Q Consensus 492 ~~~~ 495 (535)
+..+
T Consensus 419 ~~~d 422 (445)
T PRK07228 419 TTID 422 (445)
T ss_pred ccCC
Confidence 8765
|
|
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=301.33 Aligned_cols=337 Identities=25% Similarity=0.345 Sum_probs=265.0
Q ss_pred CEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeee
Q 009410 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT 178 (535)
Q Consensus 101 ~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 178 (535)
.+|+|||||.|+|+..+ |....+++.+..++++++||||++||....+. ...+.++...+... ...++++++.+..
T Consensus 2 ~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~ 79 (344)
T cd01316 2 TIRLPGLIDVHVHLREP--GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGAT 79 (344)
T ss_pred eEEeCCeEEeeeccCCC--CcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeec
Confidence 47999999999999988 77789999999999999999999999754332 45566666555554 4688898887665
Q ss_pred cCChhhHHHHHHHHHHcCCCEEEEEeecCCCC-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcc
Q 009410 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (535)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~ 257 (535)
..+.+ ++.++. . ...++|+|..+.... ..+..........+...+.++..|++..
T Consensus 80 ~~~~~---~~~~l~-~-~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 80 STNAA---TVGELA-S-EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCCHH---HHHHHH-h-ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 54432 233333 2 256788876432111 1122222222333444466777776532
Q ss_pred cccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
.+.+++.+++..+.++|+.|.++.+.++.++.+++.|++|++++++||++++.+.+.. ..+
T Consensus 136 -------------~~~~~l~la~~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~------~~~ 196 (344)
T cd01316 136 -------------TLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR------GQY 196 (344)
T ss_pred -------------HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc------CCc
Confidence 2445678888899999999999999999999999999999999999999999987743 468
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVR 414 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~ 414 (535)
+++||+|...+++++|+++. ...+++|||+|+....+.. + .+|+ |++..+++++. ++.++++++.++++
T Consensus 197 k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~-~v~~~~i~l~~l~~ 268 (344)
T cd01316 197 EVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLT-AVHEGRLTIEDIVD 268 (344)
T ss_pred eeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHH
Confidence 99999999999999999996 4789999999998776532 2 4444 99999999995 78888899999999
Q ss_pred HHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 415 LTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 415 ~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
..+.|||++||+.. + .+||||+|.+..|.++++.+.+...|+||+|+.+.++|.+||++|++||++|+++..
T Consensus 269 ~~s~nPAk~~gl~~-------~-~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~rG~~v~~~g~~~~~ 340 (344)
T cd01316 269 RLHTNPKRIFNLPP-------Q-SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFIDGEIVAP 340 (344)
T ss_pred HHHHhHHHHhCCCC-------C-CCCEEEEeCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEccC
Confidence 99999999999843 2 347999999999999999999999999999999999999999999999999998876
Q ss_pred CCCc
Q 009410 495 PGSG 498 (535)
Q Consensus 495 ~~~~ 498 (535)
.+.|
T Consensus 341 ~~~G 344 (344)
T cd01316 341 PGFG 344 (344)
T ss_pred CCCC
Confidence 5443
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=319.50 Aligned_cols=378 Identities=19% Similarity=0.214 Sum_probs=247.5
Q ss_pred cccEEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccC-CC--
Q 009410 52 SSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-- 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~-- 121 (535)
..+++|+|+.|++++. .++++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|++.... |.
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~ 85 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLAD 85 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccC
Confidence 3589999999999763 2688999999999999986432 235789999999999999999999986521 11
Q ss_pred -------------------CchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-
Q 009410 122 -------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI- 177 (535)
Q Consensus 122 -------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (535)
.+++..+ .....++++||||++|+... .....+...+.+.+..+........
T Consensus 86 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~~~~~~G~R~~~~~~~~~~~~ 161 (443)
T PRK09045 86 DLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF----PEAAAEAAHQAGMRAQIGMPVLDFPT 161 (443)
T ss_pred CCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----HHHHHHHHHHcCCeEEEecccccCCC
Confidence 0111111 23345689999999997421 1223444444444433322211100
Q ss_pred --ecCChhhHHHHHHHHH-HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCC
Q 009410 178 --TKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGI 253 (535)
Q Consensus 178 --~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~ 253 (535)
....++..+....+.+ ..+.+.+++.+.+++...++++.++++++.|+++|+++.+|+... ...... +...|.
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~---~~~~g~ 238 (443)
T PRK09045 162 AWASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADS---LKQHGQ 238 (443)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHH---HHHhCC
Confidence 0111222232223322 245677888888887788899999999999999999999998532 222222 222232
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccc
Q 009410 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 333 (535)
. .+.++.+ ....+.++.+.|+...+. ++++++++.|+.++.||..+ +..
T Consensus 239 ~----------------~~~~l~~-~g~l~~r~~~~H~~~l~~-~~~~~la~~g~~i~~~P~~~-------------~~~ 287 (443)
T PRK09045 239 R----------------PLARLAR-LGLLGPRLIAVHMTQLTD-AEIALLAETGCSVVHCPESN-------------LKL 287 (443)
T ss_pred C----------------HHHHHHH-cCCCCCCeEEEEecCCCH-HHHHHHHHcCCeEEECHHHH-------------hhh
Confidence 1 1222222 234456788899998877 88999999999999888642 111
Q ss_pred cceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHH
Q 009410 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTD 411 (535)
Q Consensus 334 ~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~e 411 (535)
+.. ..++++++++|+++++|||+.+.....+ +|. ++.+.....+... ..++++++
T Consensus 288 ~~~------------~~~~~~l~~~Gv~v~lGtD~~~~~~~~~-----~~~------~~~~a~~~~~~~~~~~~~~~~~~ 344 (443)
T PRK09045 288 ASG------------FCPVAKLLQAGVNVALGTDGAASNNDLD-----LFG------EMRTAALLAKAVAGDATALPAHT 344 (443)
T ss_pred ccC------------CCcHHHHHHCCCeEEEecCCCCCCCCcc-----HHH------HHHHHHHHHhhccCCCCcCCHHH
Confidence 111 1238899999999999999754322211 121 2333333322221 34599999
Q ss_pred HHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCee
Q 009410 412 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 491 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~ 491 (535)
+|+++|.|||+++|+++++|+|++||.|||||+|.+++...+.. +.....++... ..+|..||++|++||++|++
T Consensus 345 al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~---~~~~~lv~~~~--~~~v~~v~v~G~~v~~~g~~ 419 (443)
T PRK09045 345 ALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVY---DPVSQLVYAAG--REQVSHVWVAGKQLLDDREL 419 (443)
T ss_pred HHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCcc---ChHhHhhEeCC--CCCccEEEECCEEEEECCcC
Confidence 99999999999999988899999999999999998865332211 11111222211 35899999999999999999
Q ss_pred cccC
Q 009410 492 NVVP 495 (535)
Q Consensus 492 ~~~~ 495 (535)
++.+
T Consensus 420 ~~~d 423 (443)
T PRK09045 420 TTLD 423 (443)
T ss_pred CCCC
Confidence 9876
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=318.55 Aligned_cols=368 Identities=21% Similarity=0.295 Sum_probs=237.7
Q ss_pred ccEEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C-------
Q 009410 53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------- 120 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g------- 120 (535)
.+++|+|++|++.++ ..+++|+|+||+|++|++..+.+ +.++||++|++|+|||||+|+|+.+... +
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~-~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~ 80 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP-DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTL 80 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcH
Confidence 357899999997553 36889999999999999865433 5789999999999999999999864311 0
Q ss_pred -------------CCchhhhH----HHHHHHHhCCcEEEeccccCCC--CChHHHHHHHHHHhcccccccceeeeeecC-
Q 009410 121 -------------SETIDDFF----SGQAAALAGGTTMHIDFVIPIN--GSLTAGFEAYEKKAKNSCMDYGFHMAITKW- 180 (535)
Q Consensus 121 -------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 180 (535)
..++++.. .....++++||||++|+..... ......++.....+.+..+..+.......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~ 160 (449)
T PRK08204 81 QTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWP 160 (449)
T ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccCCCCCCC
Confidence 01111111 2334678999999999754332 123344455555444432222111110100
Q ss_pred ---ChhhHHHHHHHHH--HcCCC-EEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHHHcC
Q 009410 181 ---DEVVSDEMEVMVK--EKGIN-SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA--VFEGQKRMIELG 252 (535)
Q Consensus 181 ---~~~~~~~~~~~~~--~~g~~-~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~--~~~~~~~~~~~g 252 (535)
..+..+++..+.+ ..+.+ .+.......+....+++.+.++++.|+++|+++.+|+.+... ....++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~-- 238 (449)
T PRK08204 161 FDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHD-- 238 (449)
T ss_pred cchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHH--
Confidence 1122223333222 12222 344444445556678899999999999999999999953311 0011111111
Q ss_pred CCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcc
Q 009410 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (535)
....+.++.+.|+...+. ++++++++.|+.++.||.... .
T Consensus 239 --------------------------~g~~~~~~~i~H~~~~~~-~~~~~la~~g~~v~~~P~~~~-------------~ 278 (449)
T PRK08204 239 --------------------------AGLLGPDLNLVHGNDLSD-DELKLLADSGGSFSVTPEIEM-------------M 278 (449)
T ss_pred --------------------------CCCCCCCeEEEecCCCCH-HHHHHHHHcCCCEEEChHHHh-------------h
Confidence 123356778999999887 889999999999999886421 1
Q ss_pred ccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH----------
Q 009410 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV---------- 402 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~---------- 402 (535)
.+..+ .++++++++|+++++|||+.+..... +|. ++.+....++..
T Consensus 279 ~g~~~------------~~~~~~~~~Gv~v~lGtD~~~~~~~~------~~~------~~~~a~~~~~~~~~~~~~~~~~ 334 (449)
T PRK08204 279 MGHGY------------PVTGRLLAHGVRPSLGVDVVTSTGGD------MFT------QMRFALQAERARDNAVHLREGG 334 (449)
T ss_pred hcCCC------------CcHHHHHhcCCceeeccccCCCCCcC------HHH------HHHHHHHHHHhhcccccccccc
Confidence 11111 22889999999999999965432211 122 222222221111
Q ss_pred ---hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCee---EeeEEE
Q 009410 403 ---ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR---VKGKVE 476 (535)
Q Consensus 403 ---~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~---~~~~v~ 476 (535)
...++++.++|+++|.|+|+++|+++++|+|++||.|||||+|.+++...+-. .|+.... ...+|.
T Consensus 335 ~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~~--------dp~~~lv~~~~~~~v~ 406 (449)
T PRK08204 335 MPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVH--------DPVGAVVQSAHPGNVD 406 (449)
T ss_pred cCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCCc--------ChhhhheeccCCCCce
Confidence 13569999999999999999999988899999999999999998866433311 1222221 135899
Q ss_pred EEEECCEEEEECCeecccC
Q 009410 477 VTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 477 ~v~~~Gr~V~~~~~~~~~~ 495 (535)
.||++|++|+++|+++..+
T Consensus 407 ~v~v~G~~v~~~~~~~~~d 425 (449)
T PRK08204 407 SVMVAGRAVKRNGKLLGVD 425 (449)
T ss_pred EEEECCEEEEECCEeccCC
Confidence 9999999999999999875
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=317.02 Aligned_cols=375 Identities=18% Similarity=0.205 Sum_probs=249.0
Q ss_pred EEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEecCCCEEeecccccccccccccC-CC-------
Q 009410 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS------- 121 (535)
Q Consensus 55 ~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~~-~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~------- 121 (535)
+++.|+.|+++++ ..+++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|++.... +.
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~ 83 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAE 83 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCCCCCeEEeCCCCEEecceEeccccccchhcccccccCCCc
Confidence 4555578998775 35789999999999999975533 35789999999999999999999987521 11
Q ss_pred --------------CchhhhH----HHHHHHHhCCcEEEeccccCCCC----ChHHHHHHHHHHhcccccccceee----
Q 009410 122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHM---- 175 (535)
Q Consensus 122 --------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (535)
.++++.+ .....++++||||++|+...... .....++...+.+.+..+......
T Consensus 84 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~ 163 (451)
T PRK08203 84 LFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGES 163 (451)
T ss_pred HHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEecceeecCCc
Confidence 0112221 23345688999999998532111 245566677777666443322110
Q ss_pred --eeec-----CChhhHHHHHHHHHHc----CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHH
Q 009410 176 --AITK-----WDEVVSDEMEVMVKEK----GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFE 243 (535)
Q Consensus 176 --~~~~-----~~~~~~~~~~~~~~~~----g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~ 243 (535)
.... ...+..+..++..+.. ..+.+++.+..++....+++.++++++.|+++|+++++|+... .....
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 243 (451)
T PRK08203 164 DGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAF 243 (451)
T ss_pred cCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 0000 1122334444444221 1256787777777778899999999999999999999998433 22222
Q ss_pred HHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCc
Q 009410 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (535)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 323 (535)
.. ...|... ++.+ ......+.++.+.|+...+. ++++++++.|+.++.||....
T Consensus 244 ~~---~~~g~~~----------------~~~l-~~~g~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~~P~~~~----- 297 (451)
T PRK08203 244 CL---ERFGMRP----------------VDYL-EDLGWLGPDVWLAHCVHLDD-AEIARLARTGTGVAHCPCSNM----- 297 (451)
T ss_pred HH---HHhCCCH----------------HHHH-HHcCCCCCCeEEEEEeCCCH-HHHHHHHhcCCeEEECcHHhh-----
Confidence 22 1123221 2222 12233456788999998887 889999999999998886421
Q ss_pred ccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh
Q 009410 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE 403 (535)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 403 (535)
..+... .++++++++|+++++|||+...+.... +|. ++.+......+..
T Consensus 298 --------~l~~~~------------~~~~~~~~~Gv~v~lGtD~~~~~~~~~-----~~~------~~~~~~~~~~~~~ 346 (451)
T PRK08203 298 --------RLASGI------------APVRELRAAGVPVGLGVDGSASNDGSN-----LIG------EARQALLLQRLRY 346 (451)
T ss_pred --------hhccCC------------CCHHHHHHCCCeEEEecCCCccCCCcC-----HHH------HHHHHHHHhhccc
Confidence 111111 228899999999999999754321111 122 2333333322221
Q ss_pred -cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeE--eeEEEEEEE
Q 009410 404 -SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV--KGKVEVTIA 480 (535)
Q Consensus 404 -~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~--~~~v~~v~~ 480 (535)
...+++.++|+++|.|||+++|++ ++|+|++||.|||||+|.+.+...+ .++|+.+..+ ..+|..||+
T Consensus 347 ~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~--------~~~p~~~l~~~~~~~v~~v~v 417 (451)
T PRK08203 347 GPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRFAG--------AHDPVAALVLCGPPRADRVMV 417 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCccccCC--------ccChHHHHHccCCCCccEEEE
Confidence 235999999999999999999996 7899999999999999988763321 2456654433 258999999
Q ss_pred CCEEEEECCeecccC
Q 009410 481 GGRVVWENDELNVVP 495 (535)
Q Consensus 481 ~Gr~V~~~~~~~~~~ 495 (535)
+|++||++|+++..+
T Consensus 418 ~G~~v~~~~~~~~~d 432 (451)
T PRK08203 418 GGRWVVRDGQLTTLD 432 (451)
T ss_pred CCEEEEECCcccCCC
Confidence 999999999988765
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=311.80 Aligned_cols=373 Identities=21% Similarity=0.285 Sum_probs=243.8
Q ss_pred cEEEEccEEEcCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C---------
Q 009410 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (535)
Q Consensus 54 ~~vi~n~~vi~~~~---~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g--------- 120 (535)
+++|+|++|++++. ..+++|+|+||+|++||+... .+.++||++|++|+|||||+|+|+++... +
T Consensus 2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~ 79 (418)
T PRK06380 2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEE 79 (418)
T ss_pred eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHH
Confidence 47999999998753 357899999999999998543 34689999999999999999999986621 1
Q ss_pred ----------CCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-ecCChhhH
Q 009410 121 ----------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (535)
Q Consensus 121 ----------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (535)
..++++++ ....+++++||||++|+... .....+...+.+.+..+.+...... ........
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~ 155 (418)
T PRK06380 80 FLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS----EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPL 155 (418)
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC----hHHHHHHHHHhCCeEEEecccccCCcccccchHH
Confidence 11222222 23345689999999998532 2233444455555544433222110 00111122
Q ss_pred HHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCC
Q 009410 186 DEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264 (535)
Q Consensus 186 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (535)
+....+.+. .....++..+.+++...++++.++++++.|+++|+++++|+.+... +......+.|...
T Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~--~~~~~~~~~g~~~--------- 224 (418)
T PRK06380 156 NNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRK--EVYDHVKRTGERP--------- 224 (418)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHH--HHHHHHHHhCCCH---------
Confidence 222333321 2234466666777778889999999999999999999999965421 2222233334321
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCC
Q 009410 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (535)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (535)
+. .+......+.++.+.|+...+. ++++++++.|+.++.||... +..+.. ..
T Consensus 225 -------ie-~~~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~sn-------------~~l~~~--g~---- 276 (418)
T PRK06380 225 -------VE-HLEKIGFLNSKLIAAHCVWATY-HEIKLLSKNGVKVSWNSVSN-------------FKLGTG--GS---- 276 (418)
T ss_pred -------HH-HHHHCCCCCCCeEEEEeecCCH-HHHHHHHHcCCEEEECHHHH-------------HhhccC--CC----
Confidence 11 1222234466788999998876 88999999999999988752 111110 01
Q ss_pred CcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHHHHHHHhHHHHH
Q 009410 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTDYVRLTSTECAR 422 (535)
Q Consensus 345 ~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~eal~~~T~~~A~ 422 (535)
.++++++++|+++++|||+.......+ .|. ++++.....+... ...++++++|+++|.++|+
T Consensus 277 -----~p~~~~~~~Gv~v~lGTD~~~~~~~~d-----~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~ 340 (418)
T PRK06380 277 -----PPIPEMLDNGINVTIGTDSNGSNNSLD-----MFE------AMKFSALSVKNERWDASIIKAQEILDFATINAAK 340 (418)
T ss_pred -----CcHHHHHHCCCeEEEcCCCCcCCCCcC-----HHH------HHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHH
Confidence 238999999999999999643221111 111 2233222222111 1238999999999999999
Q ss_pred HcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeE---eeEEEEEEECCEEEEECCeecccC
Q 009410 423 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV---KGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 423 ~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~---~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
++|+ +.|+|++||+||||++|.+.+...+.. . ..|+.+... ..+|..||++|++|+++|+++..+
T Consensus 341 ~lg~--~~G~l~~G~~ADlvv~d~~~~~~~p~~-~-----~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d 408 (418)
T PRK06380 341 ALEL--NAGSIEVGKLADLVILDARAPNMIPTR-K-----NNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNGFN 408 (418)
T ss_pred HhCC--CCCccCCCccCCEEEEeCCCCccCCCC-c-----cChHHheeecCCCCceeEEEECCEEEEECCeECccC
Confidence 9999 479999999999999998866544311 0 123332222 248999999999999999999876
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=311.96 Aligned_cols=375 Identities=20% Similarity=0.247 Sum_probs=243.5
Q ss_pred EEEEccEEEcCCC---c-eeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccC-CC-----
Q 009410 55 ILIKGGTVVNAHH---Q-QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----- 121 (535)
Q Consensus 55 ~vi~n~~vi~~~~---~-~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~----- 121 (535)
++|+|++|+++++ . ++++|+|+||+|++|++.... .++.++||++|++|+|||||+|+|+.+.+. |.
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 6899999998543 2 478999999999999964221 235689999999999999999999875421 11
Q ss_pred -------------------CchhhhHH----HHHHHHhCCcEEEeccccCCCC---ChHHHHHHHHHHhcccccccceee
Q 009410 122 -------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYGFHM 175 (535)
Q Consensus 122 -------------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 175 (535)
.++++++. +...++++||||++|+...... .....++...+.+-+..+.+....
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d 161 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSD 161 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccccc
Confidence 11222221 2245689999999998532211 122333444444444333222211
Q ss_pred ee-ecCChhhHHHHHHHHHH-cC--CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHH
Q 009410 176 AI-TKWDEVVSDEMEVMVKE-KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIE 250 (535)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~-~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~ 250 (535)
.. .....+..++..++.+. .+ ...+...+.+++.+.++++.++++.+.|+++|+++++|..+ ........+ .
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~---~ 238 (442)
T PRK07203 162 RDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHK---K 238 (442)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHH---H
Confidence 10 00011122222232221 12 23566777778888899999999999999999999999954 333332222 2
Q ss_pred cCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcC
Q 009410 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (535)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (535)
.|... ++ .++.....+.++.+.|+...+. ++++.+++.|+.|+.||.+ |
T Consensus 239 ~g~~~----------------v~-~l~~~Gll~~~~~~~H~~~~~~-~d~~~la~~g~~v~~~P~s-------------n 287 (442)
T PRK07203 239 YGKDI----------------VE-RLADFGLLGEKTLAAHCIYLSD-EEIDLLKETDTFVVHNPES-------------N 287 (442)
T ss_pred cCCCH----------------HH-HHHhCCCCCCCcEEEEeecCCH-HHHHHHHhcCCeEEECchh-------------h
Confidence 23221 12 2222334567888999999887 8899999999999999975 2
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-cCCCCH
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-SGQISV 409 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~ls~ 409 (535)
+..+... .++++++++|+++++|||+...+ .|. ++++...+++... ....+.
T Consensus 288 ~~l~~g~------------~p~~~~~~~Gv~v~lGtD~~~~d---------~~~------~~~~a~~~~~~~~~~~~~~~ 340 (442)
T PRK07203 288 MGNAVGY------------NPVLEMIKNGILLGLGTDGYTSD---------MFE------SYKVANFKHKHAGGDPNVGW 340 (442)
T ss_pred hhcccCC------------CCHHHHHHCCCeEEEcCCCCCcc---------HHH------HHHHHHHHhccccCCCCCCH
Confidence 2222222 22889999999999999964321 122 3344443433211 112347
Q ss_pred HHHHHHHhHHHHHHcC--CCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 410 TDYVRLTSTECARIFN--VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 410 ~eal~~~T~~~A~~lg--l~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
+++++++|.+||+++| ++++.|+|++||+||||++|.+.+..++..++.+ ...|.+. ..+|+.||++||+|++
T Consensus 341 ~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~---~~v~~~~--~~~v~~v~v~G~~v~~ 415 (442)
T PRK07203 341 PESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNEDNING---HILFGMN--GGSVDTTIVNGKVVME 415 (442)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCcccccc---ceEeecC--CCceEEEEECCEEEEE
Confidence 8999999999999999 4567899999999999999988765543222211 2222221 3589999999999999
Q ss_pred CCeecccC
Q 009410 488 NDELNVVP 495 (535)
Q Consensus 488 ~~~~~~~~ 495 (535)
+|+++..+
T Consensus 416 ~g~~~~~d 423 (442)
T PRK07203 416 DRKFLNFD 423 (442)
T ss_pred CCcccccC
Confidence 99998876
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=301.80 Aligned_cols=358 Identities=19% Similarity=0.210 Sum_probs=246.6
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccc-c---ccCCC--Cchhh
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA-M---EFMGS--ETIDD 126 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~-~---~~~g~--~~~~~ 126 (535)
++++|+|++|++.+....++|+|+||+|++|++... ...++||++|++|+|||||+|+|.. . +..+. ...+.
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~ 79 (383)
T PRK15446 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAA 79 (383)
T ss_pred ccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHH
Confidence 469999999998776668999999999999998543 2457899999999999999999544 2 21111 22277
Q ss_pred hHHHHHHHHhCCcEEEeccccCC--C------CChH-HHHHHHH--HHhcccccccceeeeeecCChhhHHHHHHHHHHc
Q 009410 127 FFSGQAAALAGGTTMHIDFVIPI--N------GSLT-AGFEAYE--KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK 195 (535)
Q Consensus 127 ~~~~~~~~l~~GvTtv~d~~~~~--~------~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (535)
+....++++++||||++|+.... . .... ...+... ...++..+++++|......+.+..+++..+. +.
T Consensus 80 ~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~-~~ 158 (383)
T PRK15446 80 LAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALL-AH 158 (383)
T ss_pred HHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHh-cC
Confidence 88889999999999999974222 1 1122 1223333 2235678899999999877777788888887 77
Q ss_pred CCCEEEEEeecC-CC-CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHH
Q 009410 196 GINSFKFFMAYK-GS-FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (535)
Q Consensus 196 g~~~ik~~~~~~-~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 273 (535)
|...+|.|++.. +. .....+.+.+.. +.+.| ..|++.......... .|...+.+.+.
T Consensus 159 g~~~~k~fm~~~p~~~~~~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~~----------------~~~~~~~e~i~ 217 (383)
T PRK15446 159 PRVDLVSLMDHTPGQRQFRDLEKYREYY--AGKYG---LSDEEFDAFVEERIA----------------LSARYAPPNRR 217 (383)
T ss_pred CCcCEEEEeCCCCccccccCHHHHHHHH--HhhcC---CCHHHHHHHHHHHHH----------------hHhhcCHHHHH
Confidence 999999998754 32 223445555555 34666 567776544332211 24455568899
Q ss_pred HHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE-cC-CCCC--cccH
Q 009410 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM-SP-PIRA--SGHN 349 (535)
Q Consensus 274 ~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~r~--~~~~ 349 (535)
++++.++..|.++ ..|..... +.++.+++.|+.++-.+. +.+.... -...+..... .| +.|. ....
T Consensus 218 ~~v~~A~~~g~~v-~sH~~~~~--~~i~~a~~~Gv~~~e~~~------~~e~~~~-~~~~g~~v~~~~p~~~r~~~~~~~ 287 (383)
T PRK15446 218 AIAALARARGIPL-ASHDDDTP--EHVAEAHALGVAIAEFPT------TLEAARA-ARALGMSVLMGAPNVVRGGSHSGN 287 (383)
T ss_pred HHHHHHHHCCCce-eecCCCCH--HHHHHHHHcCCceeeCCC------cHHHHHH-HHHCCCEEEeCCcccccCCcccch
Confidence 9999999999997 77884222 557778888887763211 1111100 0001111111 12 2333 3456
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 350 ~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
..+++++++|+++++|||+.|... +...+ .+....+++++++++++|.|||+++|+++
T Consensus 288 ~~~~~~~~~Gv~~~lgSD~~p~~~--------------------~~~~~-~~~~~~gls~~~al~~~T~npA~~lgl~~- 345 (383)
T PRK15446 288 VSALDLAAAGLLDILSSDYYPASL--------------------LDAAF-RLADDGGLDLPQAVALVTANPARAAGLDD- 345 (383)
T ss_pred HhHHHHHHCCCcEEEEcCCChhhH--------------------HHHHH-HHHHhcCCCHHHHHHHHhHHHHHHcCCCC-
Confidence 788999999999999999865311 11112 22335679999999999999999999954
Q ss_pred CccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 430 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 430 ~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
.|+|++|+.|||+|+|.++. ...+..||++|++||+.
T Consensus 346 ~G~I~~G~~ADlvv~d~~~~----------------------~~~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 346 RGEIAPGKRADLVRVRRAGG----------------------LPVVRAVWRGGRRVFLA 382 (383)
T ss_pred CcCcCCCCcCCEEEEcCCCC----------------------CcchheEEECCEEEEeC
Confidence 49999999999999997621 13688999999999875
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=307.72 Aligned_cols=375 Identities=22% Similarity=0.266 Sum_probs=249.7
Q ss_pred EEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccC-CC-----
Q 009410 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----- 121 (535)
Q Consensus 55 ~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~----- 121 (535)
++|+|++|++++. .++++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+.+... |.
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 3789999997543 2578999999999999975321 135689999999999999999999976521 10
Q ss_pred -------------------CchhhhHH----HHHHHHhCCcEEEeccccCCC---CChHHHHHHHHHHhcccccccceee
Q 009410 122 -------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPIN---GSLTAGFEAYEKKAKNSCMDYGFHM 175 (535)
Q Consensus 122 -------------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (535)
.++++.+. +..+++++||||++|+..... .......+...+.+-+..+.+.+..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~ 160 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD 160 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence 11122221 223458999999999854322 1233445556666655544433322
Q ss_pred eee-cCChhhHHHHHHHHH-HcC--CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHH
Q 009410 176 AIT-KWDEVVSDEMEVMVK-EKG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIE 250 (535)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~-~~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~ 250 (535)
... ....+..++..++.+ ..+ ...++..+.++..+.++++.++++.+.|+++++++++|+.+ ..+.....+ .
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~---~ 237 (441)
T TIGR03314 161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHH---K 237 (441)
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH---H
Confidence 110 111122222222221 122 23577777888888899999999999999999999999954 333332222 2
Q ss_pred cCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcC
Q 009410 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (535)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (535)
.|... ++.+ +-....+.++.+.|+...+. ++++.+++.|+.|+.||.+ |
T Consensus 238 ~g~~~----------------~~~l-~~~G~l~~~~~~~H~~~~~~-~d~~~la~~g~~v~~cP~s-------------n 286 (441)
T TIGR03314 238 YGKDI----------------VERL-ADFGLLGSKTLAAHCIYLSD-REIELLNETDTFVVHNPES-------------N 286 (441)
T ss_pred cCCCH----------------HHHH-HHCCCCCCCeEEEEEecCCH-HHHHHHHHcCCcEEECHHH-------------H
Confidence 23211 2222 22335577889999999887 8999999999999999975 3
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhc-CCCCH
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVES-GQISV 409 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~-~~ls~ 409 (535)
+..+.+. +| +.+++++|+++++|||+...+ .|. ++++...+++.... ....+
T Consensus 287 ~~l~~G~---~p---------~~~~~~~Gv~v~LGtD~~~~d---------~~~------em~~a~~~~~~~~~~~~~~~ 339 (441)
T TIGR03314 287 MGNAVGY---NP---------VLRMFKNGILLGLGTDGYTSD---------MFE------SLKFANFKHKDAGGDLNAAW 339 (441)
T ss_pred hhhccCC---CC---------HHHHHHCCCEEEEcCCCCCcC---------HHH------HHHHHHHHhccccCCCCccH
Confidence 3333322 22 888999999999999975321 222 44555444433221 11235
Q ss_pred HHHHHHHhHHHHHHcC--CCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 410 TDYVRLTSTECARIFN--VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 410 ~eal~~~T~~~A~~lg--l~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
.++++++|.++|+++| +..+.|+|++||+|||+++|.+.++.++.+++.+. ++.+.. .++|..||++|++|++
T Consensus 340 ~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~~----lv~~~~-~~~V~~v~V~G~~v~~ 414 (441)
T TIGR03314 340 PESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNINGH----ILFGMN-GGSVDSTMVNGKVVME 414 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhcccc----ceecCC-CCeeEEEEECCEEEEE
Confidence 7899999999999996 44578999999999999999988877664443332 222221 4699999999999999
Q ss_pred CCeecccC
Q 009410 488 NDELNVVP 495 (535)
Q Consensus 488 ~~~~~~~~ 495 (535)
+++++..+
T Consensus 415 ~~~~~~~d 422 (441)
T TIGR03314 415 DREFLHFD 422 (441)
T ss_pred CCcccccC
Confidence 99998876
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=303.66 Aligned_cols=373 Identities=22% Similarity=0.281 Sum_probs=243.2
Q ss_pred cEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C----------
Q 009410 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g---------- 120 (535)
+++|+|++|++++.. .+++|+|+||+|++|+++...+ +.++||+.|++|+|||||+|+|+++... |
T Consensus 2 ~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~~-~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~ 80 (424)
T PRK08393 2 SILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKP-ADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEW 80 (424)
T ss_pred eEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHH
Confidence 489999999998763 5789999999999999864433 4679999999999999999999876411 0
Q ss_pred ----------CCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-ecCChhhH
Q 009410 121 ----------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (535)
Q Consensus 121 ----------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (535)
..++++++ .....++++||||+.|+... ....++.....+.+....++..... .....+..
T Consensus 81 l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~l 156 (424)
T PRK08393 81 LQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFH----MEEVAKATLEVGLRGYLSYGMVDLGDEEKREKEI 156 (424)
T ss_pred HHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccC----HHHHHHHHHHhCCeEEEeceEecCCCccchHHHH
Confidence 01222322 23345689999999998532 2344444445554544433221100 00111112
Q ss_pred HHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
++..+..+ ..+...+...+.++....++++.++++++.|+++|+++.+|+.. ........+ ..|...
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~g~~~------ 227 (424)
T PRK08393 157 KETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIRE---KYGKSP------ 227 (424)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCcCH------
Confidence 22222221 12333455555666667789999999999999999999999943 333222222 122211
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcC
Q 009410 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (535)
+ +.+......+.++.+.|+...+. ++++++++.|+.+++||..+ +..+...
T Consensus 228 ----------~-~~l~~~G~l~~~~~~~H~~~l~~-~~l~~la~~g~~v~~~P~sn-------------~~lg~g~---- 278 (424)
T PRK08393 228 ----------V-VLLDEIGFLNEDVIAAHGVWLSS-RDIRILASAGVTVAHNPASN-------------MKLGSGV---- 278 (424)
T ss_pred ----------H-HHHHHcCCCCCCcEEEEeecCCH-HHHHHHHhcCCEEEECHHHH-------------HhhccCC----
Confidence 1 11222234466778899988776 88999999999999998642 1111111
Q ss_pred CCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHHHHHHHHhHH
Q 009410 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVTDYVRLTSTE 419 (535)
Q Consensus 342 ~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~eal~~~T~~ 419 (535)
.++.+++++|+++++|||+.......+ ++. ++.+....++... ...++++++++++|.|
T Consensus 279 --------~~~~~~~~~Gv~v~lGtD~~~~~~~~d-----~~~------~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~ 339 (424)
T PRK08393 279 --------MPLRKLLNAGVNVALGTDGAASNNNLD-----MLR------EMKLAALLHKVHNLDPTIADAETVFRMATQN 339 (424)
T ss_pred --------CCHHHHHHCCCcEEEecCCCccCCchh-----HHH------HHHHHHHHHhhccCCCCcCCHHHHHHHHHHH
Confidence 238899999999999999654222111 111 2233323322221 1236789999999999
Q ss_pred HHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 420 CARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 420 ~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
||+++|++ .|+|++||+||||++|.+.+...+..++.+...+.++ .++|..||++|++||++|+++..+
T Consensus 340 ~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~v~G~~v~~~g~~~~~d 408 (424)
T PRK08393 340 GAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINNPISHLVYSAN-----GNDVETTIVDGKIVMLDGEVLTLD 408 (424)
T ss_pred HHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCChHHHeeeeCC-----CCCeeEEEECCEEEEECCeECCCC
Confidence 99999994 5999999999999999987766654444443333332 358999999999999999987754
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=308.81 Aligned_cols=372 Identities=19% Similarity=0.173 Sum_probs=237.0
Q ss_pred cEEEEccEEEcCCC-----ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc-----cC----
Q 009410 54 KILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME-----FM---- 119 (535)
Q Consensus 54 ~~vi~n~~vi~~~~-----~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~-----~~---- 119 (535)
.++|+|+.|++.++ .++++|+|+||+|++|++.... .+.++||++|++|+|||||+|+|+... ..
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~-~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~ 80 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG-EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPG 80 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC-CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchh
Confidence 47899999976543 2578999999999999985432 246899999999999999999996421 00
Q ss_pred ---C--------------CCchhhhH----HHHHHHHhCCcEEEeccccCCC---C----ChHHHHHHHHHHhccccccc
Q 009410 120 ---G--------------SETIDDFF----SGQAAALAGGTTMHIDFVIPIN---G----SLTAGFEAYEKKAKNSCMDY 171 (535)
Q Consensus 120 ---g--------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~---~----~~~~~~~~~~~~~~~~~~~~ 171 (535)
+ ..++++.+ ..+.+++++||||++|+..... . .....++.....+.+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~ 160 (488)
T PRK06151 81 WAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGP 160 (488)
T ss_pred HHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEEecc
Confidence 0 01222222 2345578999999998743211 1 13344445555554432221
Q ss_pred ceeee-----e-----e-cC---ChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEE
Q 009410 172 GFHMA-----I-----T-KW---DEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234 (535)
Q Consensus 172 ~~~~~-----~-----~-~~---~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 234 (535)
.+... . . .. ..+...+...+.+ ..|.+.+|....++....++++.+.++++.|+++|+++.+|
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H 240 (488)
T PRK06151 161 AYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLH 240 (488)
T ss_pred hhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 11100 0 0 00 0111222222221 34667888887777777789999999999999999999999
Q ss_pred cC-ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHH--------HHHHHHHH
Q 009410 235 AE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM--------EEIAKARK 305 (535)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~--------~~~~~~~~ 305 (535)
+. +........+ ..|... ++.+.+ ....+.++.+.|+...+.. ++++++++
T Consensus 241 ~~e~~~~~~~~~~---~~g~~~----------------~~~~~~-~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~ 300 (488)
T PRK06151 241 CAQGVLEVETVRR---LHGTTP----------------LEWLAD-VGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAE 300 (488)
T ss_pred ECCchHHHHHHHH---HcCCCH----------------HHHHHH-cCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHh
Confidence 94 4433222221 122211 111111 2233567788898876531 67888999
Q ss_pred cCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCccc
Q 009410 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385 (535)
Q Consensus 306 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~ 385 (535)
.|+.+++||... ...+.. ..++.+++++|+++++|||+.+.+ +|.
T Consensus 301 ~g~~v~~~P~~~-------------~~~g~~------------~~p~~~l~~~Gv~v~lGtD~~~~~---------~~~- 345 (488)
T PRK06151 301 HGVSIVHCPLVS-------------ARHGSA------------LNSFDRYREAGINLALGTDTFPPD---------MVM- 345 (488)
T ss_pred cCCEEEECchhh-------------hhhccc------------cccHHHHHHCCCcEEEECCCCCcc---------HHH-
Confidence 999999887531 111111 133889999999999999964321 122
Q ss_pred CcchHHHHHHHHHHHHHh--cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCC
Q 009410 386 IPNGIEERMHLVWDTMVE--SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463 (535)
Q Consensus 386 ~~~g~~~~l~~~~~~~~~--~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~ 463 (535)
.+.......++.. ...++++++|+++|.|||+++|+++ +|+|++||.|||||+|.+.+...+. +
T Consensus 346 -----~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~--------~ 411 (488)
T PRK06151 346 -----NMRVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPV--------F 411 (488)
T ss_pred -----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCc--------c
Confidence 1222222222322 1248999999999999999999965 8999999999999999775432221 1
Q ss_pred CCCCCeeE---eeEEEEEEECCEEEEECCeecccC
Q 009410 464 NVYEGRRV---KGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 464 ~p~~~~~~---~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
.|+.+... ..+|+.||++|++||++|+++..+
T Consensus 412 d~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d 446 (488)
T PRK06151 412 DPIRTLVTGGSGRDVRAVFVDGRVVMEDGRLPGVD 446 (488)
T ss_pred CHHHHHHhhCCCCCccEEEECCEEEEECCeecCCC
Confidence 12222111 247999999999999999999876
|
|
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=303.05 Aligned_cols=361 Identities=19% Similarity=0.168 Sum_probs=228.0
Q ss_pred eeeeEEEeCCEEEEeeCCCCC----CCCceEEecCCCEEeecccccccccccccC-CC--------------------Cc
Q 009410 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET 123 (535)
Q Consensus 69 ~~~~I~I~~G~I~~Vg~~~~~----~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~--------------------~~ 123 (535)
++++|+|+||+|++||+.... +.+.++||++|++|+|||||+|+|+++... +. .+
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 488999999999999985332 223689999999999999999999876521 10 01
Q ss_pred hhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeee-ee----cCChhhHHHHHHHHHH
Q 009410 124 IDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-IT----KWDEVVSDEMEVMVKE 194 (535)
Q Consensus 124 ~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 194 (535)
++..+. +..+++++||||+.|+............+...+.+.+..+..++... .. ....+..+...++.++
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIER 189 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 111111 23446899999999875432222333444444444444333322211 00 1111222222233222
Q ss_pred -cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhc-CCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
.+...+++.+.++..+.++++.++++.+.|+++ ++++++|.. +........+ ..|.. + .
T Consensus 190 ~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~---~~g~~---------~------~ 251 (433)
T PRK09228 190 WHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKE---LFPEA---------R------D 251 (433)
T ss_pred HhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHH---HcCCC---------C------C
Confidence 233346666677777788999999999999998 999999994 4433322221 11211 0 0
Q ss_pred HHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHH
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (535)
..+.++-....+.++.+.|+...++ ++++++++.|+.++.||..+ +..+... .+
T Consensus 252 ~~~~l~~~G~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~~P~sn-------------~~lg~g~------------~~ 305 (433)
T PRK09228 252 YLDVYERYGLLGPRAVFAHCIHLED-RERRRLAETGAAIAFCPTSN-------------LFLGSGL------------FD 305 (433)
T ss_pred HHHHHHHcCCCCCCeEEEeccCCCH-HHHHHHHHcCCeEEECCccH-------------HhhcCCC------------cC
Confidence 1111222234467889999999887 88999999999999998752 1111111 23
Q ss_pred HHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 352 ~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
+.+++++|+++++|||....+.. + +|. ++++....+++ ...+++++++|+++|.+||+++|+++++|
T Consensus 306 ~~~~~~~Gv~v~lGtD~~~~~~~-d-----~~~------~~~~~~~~~~~-~~~~~~~~~~l~~aT~~~A~~lg~~~~~G 372 (433)
T PRK09228 306 LKRADAAGVRVGLGTDVGGGTSF-S-----MLQ------TMNEAYKVQQL-QGYRLSPFQAFYLATLGGARALGLDDRIG 372 (433)
T ss_pred HHHHHHCCCeEEEecCCCCCCCC-C-----HHH------HHHHHHHHhhc-ccCCCCHHHHHHHHhHHHHHHhCCCCCCc
Confidence 88899999999999996432111 1 111 22333333222 23458999999999999999999987899
Q ss_pred cccCCCCccEEEEcCCCceeeec-----CCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 432 AILVGSDADIIIFNPNSSFEITA-----RSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~-----~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+|++||+||||++|.++.+...+ ..+.++.....|.+. .++|+.|||+|++|+++
T Consensus 373 ~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~--~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 373 NLAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGD--DRAVAETYVAGRPVYRR 432 (433)
T ss_pred ccCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCC--ccceeEEEECCEEeccC
Confidence 99999999999999876433221 011222233344433 46899999999999875
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=299.51 Aligned_cols=374 Identities=23% Similarity=0.324 Sum_probs=241.5
Q ss_pred cEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C----------
Q 009410 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (535)
Q Consensus 54 ~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g---------- 120 (535)
+++|+|++|+++++ ..+++|+|+||+|++|++.... .+.++||+.|++|+|||||+|+|+.+... +
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~-~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~~ 81 (430)
T PRK06038 3 DIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG-DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAEW 81 (430)
T ss_pred CEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC-CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHHH
Confidence 58999999997653 3578999999999999986432 34689999999999999999999986521 1
Q ss_pred ----------CCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-ecCChhhH
Q 009410 121 ----------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (535)
Q Consensus 121 ----------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (535)
..++++.+ .....++++||||++|+... .....+...+.+.+....++..... .....+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~----~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~l 157 (430)
T PRK06038 82 LNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY----MDEVAKAVEESGLRAALSYGMIDLGDDEKGEAEL 157 (430)
T ss_pred HHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC----HHHHHHHHHHhCCeEEEEchhccCCCccchHHHH
Confidence 01122221 22345688999999998531 2233444444444433222211100 00111222
Q ss_pred HHHHHHHHH-c--CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009410 186 DEMEVMVKE-K--GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (535)
Q Consensus 186 ~~~~~~~~~-~--g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (535)
++...+++. . ....++..+.++....++++.++++++.|+++|+++.+|+.+.......... ..|...
T Consensus 158 ~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~--~~G~~~------- 228 (430)
T PRK06038 158 KEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKE--QYGMCS------- 228 (430)
T ss_pred HHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHH--HhCCCH-------
Confidence 223333322 1 1235666667777778899999999999999999999999665432222211 122211
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
++. ++-....+.++.+.|+...++ ++++++++.|+.++.||..+ +..+...
T Consensus 229 ---------i~~-l~~~g~l~~r~~~~H~~~l~~-~~~~~la~~g~~v~~~P~~n-------------~~~~~~~----- 279 (430)
T PRK06038 229 ---------VNY-LDDIGFLGPDVLAAHCVWLSD-GDIEILRERGVNVSHNPVSN-------------MKLASGI----- 279 (430)
T ss_pred ---------HHH-HHHcCCCCCCeEEEEEecCCH-HHHHHHHhcCCEEEEChHHh-------------hhhccCC-----
Confidence 111 122233467788899998887 78999999999999988642 1111111
Q ss_pred CCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH--hcCCCCHHHHHHHHhHHH
Q 009410 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV--ESGQISVTDYVRLTSTEC 420 (535)
Q Consensus 343 ~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~--~~~~ls~~eal~~~T~~~ 420 (535)
.++++++++|+++++|||+.......+ +|. ++.+........ ...+++++++|+++|.||
T Consensus 280 -------~p~~~~~~~Gv~v~lGtD~~~~~~~~d-----~~~------~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~g 341 (430)
T PRK06038 280 -------APVPKLLERGVNVSLGTDGCASNNNLD-----MFE------EMKTAALLHKVNTMDPTALPARQVLEMATVNG 341 (430)
T ss_pred -------CCHHHHHHCCCeEEEeCCCCccCCCcC-----HHH------HHHHHHHHhhhccCCCCcCCHHHHHHHHhHHH
Confidence 238999999999999999643221111 122 222222222221 134689999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 421 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 421 A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
|+++|++ .|+|++||.||||++|.+.+...+..++. ...+|.+. ..+|+.||++|+++|++|+++..+
T Consensus 342 A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~~~~---~~~v~~~~--~~~v~~v~v~G~~v~~~g~~~~~d 409 (430)
T PRK06038 342 AKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVRDVP---SHLVYSAS--GSDVDTTIVDGRILMEDYKVLCMD 409 (430)
T ss_pred HHHhCCC--CCccCCCcccCEEEEeCCCCccCCCCChH---HheeEeCC--CCceeEEEECCEEEEECCeECCCC
Confidence 9999994 59999999999999998865433321111 11222221 247999999999999999998876
|
|
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=298.98 Aligned_cols=379 Identities=20% Similarity=0.221 Sum_probs=243.0
Q ss_pred ccEEEEccE-EEcCCC----cee-eeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC----
Q 009410 53 SKILIKGGT-VVNAHH----QQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---- 121 (535)
Q Consensus 53 ~~~vi~n~~-vi~~~~----~~~-~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~---- 121 (535)
.+++|+|++ |++.+. ..+ ++|+|+||+|++|++. ...++.++||++|++|+|||||+|+|+++.+. |.
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~~ 80 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TPLPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAGI 80 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CCCCCCeEEeCCCCEEecCEeecccCccccccccccccc
Confidence 468999996 677553 234 4899999999999983 32346899999999999999999999997631 11
Q ss_pred ------------------CchhhhH----HHHHHHHhCCcEEEeccccC---CC--CChHHHHHHHHHHhccccccccee
Q 009410 122 ------------------ETIDDFF----SGQAAALAGGTTMHIDFVIP---IN--GSLTAGFEAYEKKAKNSCMDYGFH 174 (535)
Q Consensus 122 ------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~ 174 (535)
.+++..+ .+..+++++||||++|+... .. ......++...+.+.+..+.++..
T Consensus 81 ~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 160 (457)
T PRK12393 81 NQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGGA 160 (457)
T ss_pred CCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEEEcccc
Confidence 1111211 23345689999999998522 11 123445566666666644332221
Q ss_pred e-------eeec-C----ChhhHHHHHHHHHH-cC-C--CEEEEEeecCCC-CcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 175 M-------AITK-W----DEVVSDEMEVMVKE-KG-I--NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 175 ~-------~~~~-~----~~~~~~~~~~~~~~-~g-~--~~ik~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
. .... . ..+..+....+.+. .+ . ..+++.+.++.. ..++++.++++++.|+++|+++.+|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e 240 (457)
T PRK12393 161 TQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSHLSE 240 (457)
T ss_pred ccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 1 0000 0 11223333333321 11 1 124555555555 6788999999999999999999999954
Q ss_pred h-hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEecccc
Q 009410 238 G-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (535)
Q Consensus 238 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~ 316 (535)
. ..+.... ...|... ++.+ +-....+.++.+.|+...++ ++++++++.|+.++.||..
T Consensus 241 ~~~~~~~~~---~~~g~~~----------------~~~l-~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~s 299 (457)
T PRK12393 241 TVDYVDFCR---EKYGMTP----------------VQFV-AEHDWLGPDVWFAHLVKLDA-EEIALLAQTGTGIAHCPQS 299 (457)
T ss_pred CHHHHHHHH---HHhCCCH----------------HHHH-HHcCCCCCCeEEEEEecCCH-HHHHHHHHcCCeEEECchh
Confidence 3 2222222 1222211 1111 22233466788999999887 8999999999999999865
Q ss_pred ceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHH
Q 009410 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHL 396 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 396 (535)
+ +..+... .++++++++|+++++|||+...+...+ +|. ++.+..
T Consensus 300 n-------------~~lg~g~------------~~~~~~~~~Gv~v~lGtD~~~~~~~~d-----~~~------~~~~a~ 343 (457)
T PRK12393 300 N-------------GRLGSGI------------APALAMEAAGVPVSLGVDGAASNESAD-----MLS------EAHAAW 343 (457)
T ss_pred h-------------hhhcccC------------CCHHHHHHCCCeEEEecCCcccCCCcc-----HHH------HHHHHH
Confidence 2 2222211 228899999999999999754321111 222 222222
Q ss_pred HHHHHH-hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEE
Q 009410 397 VWDTMV-ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 475 (535)
Q Consensus 397 ~~~~~~-~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v 475 (535)
..+... ....++++++++++|.+||+++|++ ++|+|++||.|||+|+|.+.+...+..++. ++++.... ..+|
T Consensus 344 ~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~----~~~~~~~~-~~~v 417 (457)
T PRK12393 344 LLHRAEGGADATTVEDVVHWGTAGGARVLGLD-AIGTLAVGQAADLAIYDLDDPRFFGLHDPA----IAPVACGG-PAPV 417 (457)
T ss_pred HHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCC-CCCCcCCCCcCCEEEEeCCCcccCCCCCch----hhhhccCC-CCCe
Confidence 222110 1234899999999999999999995 489999999999999999877655432211 22333211 4689
Q ss_pred EEEEECCEEEEECCeecccC
Q 009410 476 EVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 476 ~~v~~~Gr~V~~~~~~~~~~ 495 (535)
..||++|++||++|+++..+
T Consensus 418 ~~v~v~G~~v~~~~~~~~~d 437 (457)
T PRK12393 418 KALLVNGRPVVENGAIPGLD 437 (457)
T ss_pred eEEEECCEEEEECCccCCCC
Confidence 99999999999999988765
|
|
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=299.75 Aligned_cols=369 Identities=20% Similarity=0.258 Sum_probs=242.2
Q ss_pred CcccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCC----CCCceEEecCCCEEeecccccccccccccC-----
Q 009410 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM----- 119 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~----~~~~~vID~~G~~vlPGlID~H~H~~~~~~----- 119 (535)
|..+++|+||+|+|++. .....|.|+||||++||++... .+.+++||++|++|+|||||+|.|+...-.
T Consensus 3 ~~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~ 82 (535)
T COG1574 3 MAADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLEL 82 (535)
T ss_pred cccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhcc
Confidence 46889999999999886 3678999999999999987432 246899999999999999999999866400
Q ss_pred -------------------------------------------------------------------------------C
Q 009410 120 -------------------------------------------------------------------------------G 120 (535)
Q Consensus 120 -------------------------------------------------------------------------------g 120 (535)
|
T Consensus 83 ~~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~G 162 (535)
T COG1574 83 NLDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAG 162 (535)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcC
Confidence 0
Q ss_pred CC--------------------------------------chhhhH----H-HHHHHHhCCcEEEeccccCCCCChHHHH
Q 009410 121 SE--------------------------------------TIDDFF----S-GQAAALAGGTTMHIDFVIPINGSLTAGF 157 (535)
Q Consensus 121 ~~--------------------------------------~~~~~~----~-~~~~~l~~GvTtv~d~~~~~~~~~~~~~ 157 (535)
.. .++... . +.+.+.+.|||++.|+.. . ......+
T Consensus 163 i~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~-~~~~~~~ 240 (535)
T COG1574 163 ITRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y-QGYYADY 240 (535)
T ss_pred CCCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c-ccchhHH
Confidence 00 000100 1 333566899999999975 2 2223333
Q ss_pred HHHHHHhcc--cccccceeeeeecCChhhHHHHHHHHHH------cCCCEEEEEeec----------------C---CCC
Q 009410 158 EAYEKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKE------KGINSFKFFMAY----------------K---GSF 210 (535)
Q Consensus 158 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~ik~~~~~----------------~---~~~ 210 (535)
......... ..+.+.......... ++....... .....+|+|.+. + |..
T Consensus 241 ~~~r~~~~~~~l~~rv~~~l~~~~~~----~~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~ 316 (535)
T COG1574 241 EAYRALAAGGELPVRVALLLFTEDLK----EERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGEL 316 (535)
T ss_pred HHHHHHHhcCcceEEEEeeccccchh----hHHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCCCc
Confidence 333333322 222222221111111 111111111 223345666652 1 455
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q 009410 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (535)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 290 (535)
..+++.+.++++.|.++|+++.+|+.++.+++..++.++..... ....+.+..+.|
T Consensus 317 l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~~~~~------------------------~~~~~~r~rieH 372 (535)
T COG1574 317 LLTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEKARKK------------------------NGLKGLRHRIEH 372 (535)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHHHhhh------------------------cCCccCCceeee
Confidence 77899999999999999999999999999888888765443221 112356678999
Q ss_pred ccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 291 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
+...+. ++++++++.|+ +++.+|+++..+.+.+.+ .+.. ...... .+++.++++|++++.|||.+.
T Consensus 373 ~~~v~~-~~i~R~~~Lgv--~~svQP~f~~~~~~~~~~-rlG~-~r~~~~---------~p~~~ll~~G~~la~gSD~Pv 438 (535)
T COG1574 373 AELVSP-DQIERFAKLGV--IASVQPNFLFSDGEWYVD-RLGE-ERASRS---------YPFRSLLKAGVPLAGGSDAPV 438 (535)
T ss_pred eeecCH-hHHHHHHhcCc--eEeeccccccccchHHHH-hhhh-hhhhcc---------CcHHHHHHCCCeEeccCCCCC
Confidence 998887 89999998875 455555555433222221 1111 111111 238999999999999999643
Q ss_pred CChhhhhcCCCCcccCcchHHHHHHHHHHH-HH--hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCC
Q 009410 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDT-MV--ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~-~~--~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~ 447 (535)
... +||. |++..+...-.. .. .+..||++|||++.|.++|++.|.++++|+|++||.|||+|+|.
T Consensus 439 -~~~------dP~~----~i~~AVtr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~- 506 (535)
T COG1574 439 -EPY------DPWL----GIYAAVTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDR- 506 (535)
T ss_pred -CCC------ChHH----HHHHHHcCCCCCCCCCccccccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecC-
Confidence 222 2443 333322211000 00 01159999999999999999999999999999999999999995
Q ss_pred CceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 448 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 448 ~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+++.++++.+.. -+|+.|+++|++||+.
T Consensus 507 d~f~~~~~~i~~-------------~~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 507 DPFTVDPDSIKD-------------TKVVLTIVAGKVVYRA 534 (535)
T ss_pred CcccCChHHhcc-------------ceEEEEEEcCeEeecC
Confidence 466776655554 3899999999999975
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=291.43 Aligned_cols=344 Identities=21% Similarity=0.238 Sum_probs=209.6
Q ss_pred ccEEEEccEEEcC-CCceeeeEEEeCCEEEEeeCC-CCCCCCceEEecCCCEEeecccccccccccccCCCCchhh----
Q 009410 53 SKILIKGGTVVNA-HHQQIADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD---- 126 (535)
Q Consensus 53 ~~~vi~n~~vi~~-~~~~~~~I~I~~G~I~~Vg~~-~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~---- 126 (535)
..+++.+++.+++ ...+++.|+|+||||++|++. ...+++.++||++|++|+|||||+|+|+... +....+.
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~--~~~~~~~~~~~ 87 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFG--GSRGGEFELRE 87 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeecccccccc--CCccchhhhcc
Confidence 4578888888884 344679999999999999988 5667789999999999999999999999885 1110000
Q ss_pred ---------------------------------hHHHHHHHHhCCcEEEeccccCCCC-----ChHHHHHHHHHHhcccc
Q 009410 127 ---------------------------------FFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSC 168 (535)
Q Consensus 127 ---------------------------------~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~ 168 (535)
....+..++.+|+|+.-........ ...+.........+...
T Consensus 88 ~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~ 167 (406)
T COG1228 88 AGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAV 167 (406)
T ss_pred cCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhccccccccc
Confidence 0011222355666665433221111 01111111110000000
Q ss_pred cccce-eeeeecC---C-hhhHHHHHHHHHHcCCCEEEEEee-cCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHH
Q 009410 169 MDYGF-HMAITKW---D-EVVSDEMEVMVKEKGINSFKFFMA-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF 242 (535)
Q Consensus 169 ~~~~~-~~~~~~~---~-~~~~~~~~~~~~~~g~~~ik~~~~-~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 242 (535)
...+. ..+.... . ....+.+..+++.....++.-+.+ .......++++++++++.|++.|+++.+|++....
T Consensus 168 ~~t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g-- 245 (406)
T COG1228 168 GSTPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADG-- 245 (406)
T ss_pred cCccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhccccccccCHHHHHHHHHHHHHCCCceEEEecccch--
Confidence 00000 0001111 1 112222222121111111222222 22334568999999999999999999999987653
Q ss_pred HHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHH--cCCcEEeccccceEe
Q 009410 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK--AGQRVIGEPVVSGLV 320 (535)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~--~g~~v~~~~~~~~~~ 320 (535)
.+...+.|.. .+.|....+. +....+++ .|.+ +++..+...+
T Consensus 246 --~~~A~~~g~~--------------------------------s~~H~~~ld~-~~~~~~a~~~~g~~-~~~l~p~~~~ 289 (406)
T COG1228 246 --IKLAIRLGAK--------------------------------SAEHGTLLDH-ETAALLAEKGAGTP-VPVLLPRTKF 289 (406)
T ss_pred --HHHHHHhCcc--------------------------------eehhhhhcCH-hHHHHHhhccCCCc-cccccchhhh
Confidence 3333333332 3556666665 77888888 6654 1222211000
Q ss_pred eCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHH
Q 009410 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDT 400 (535)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 400 (535)
. . .......++.+++.|++++++||+.+.+... .+.+.+..
T Consensus 290 ~-----------l-----------~e~~~~~~~~l~~~GV~vai~TD~~~~~~~~-----------------~l~~~m~l 330 (406)
T COG1228 290 E-----------L-----------RELDYKPARKLIDAGVKVAIGTDHNPGTSHG-----------------SLALEMAL 330 (406)
T ss_pred h-----------h-----------hcccchhHHHHHHCCCEEEEEcCCCCCchhh-----------------HHHHHHHH
Confidence 0 0 0011244889999999999999987765311 22333333
Q ss_pred HHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEE
Q 009410 401 MVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 480 (535)
Q Consensus 401 ~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~ 480 (535)
+++.+ ||++|||+++|.|||++||+++++|+||+||+|||||||+||+.++. |... ..+|.+||+
T Consensus 331 ~~~~g-mtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~------------y~~~--~~~v~~v~k 395 (406)
T COG1228 331 AVRLG-MTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIP------------YFLG--LNKVEAVIK 395 (406)
T ss_pred HHHcC-CCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhcc------------cccc--CCceEEEEE
Confidence 44455 99999999999999999999999999999999999999999875542 2111 358999999
Q ss_pred CCEEEEECCe
Q 009410 481 GGRVVWENDE 490 (535)
Q Consensus 481 ~Gr~V~~~~~ 490 (535)
+|+++++.+.
T Consensus 396 ~G~~~~~~~~ 405 (406)
T COG1228 396 DGKVVYERGS 405 (406)
T ss_pred CCEEeecCCC
Confidence 9999998764
|
|
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=287.40 Aligned_cols=347 Identities=16% Similarity=0.224 Sum_probs=224.6
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
+.+++|+|++|+++.. ...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +.. ....
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PGliD~H~H~~~~--g~~---~~~~ 75 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-ASETRIIHADGCIVTPGLIDYHAHVFYD--GTE---GGVR 75 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-CCCCeEEECCCCEEECCEEEeeecCCCC--Ccc---cccC
Confidence 4578999999998763 356799999999999987432 2356899999999999999999998654 211 1122
Q ss_pred HHHHHHhCCcEEEeccccCCCCChHHHHHHH---HHHhcccccccceeeeeec--C--Ch-h--hHHHHHHHHHH--cCC
Q 009410 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAY---EKKAKNSCMDYGFHMAITK--W--DE-V--VSDEMEVMVKE--KGI 197 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~--~~-~--~~~~~~~~~~~--~g~ 197 (535)
....++++||||++|+............+.. .+.+.+.++.++++..... . .. + ..++..++.++ .+.
T Consensus 76 ~~~~~l~~G~Ttv~d~g~~~~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T PRK12394 76 PDMYMPPNGVTTVVDAGSAGTANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNVL 155 (379)
T ss_pred HHHHHHhCCccEEEECCCCCcccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCcE
Confidence 2355789999999999654332222222221 2222334444444432211 0 01 1 13455555533 456
Q ss_pred CEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHH
Q 009410 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (535)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (535)
.++|++.........+++.+++.++.|+++|+++.+|+.+..... .+ .+
T Consensus 156 ~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~--~~----------------------------~~- 204 (379)
T PRK12394 156 QGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPM--KE----------------------------LV- 204 (379)
T ss_pred EEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccH--HH----------------------------HH-
Confidence 677776543322356799999999999999999999996542110 00 01
Q ss_pred HHHhcCCCEEEEEccC----------HHHHHHHHHHHHcCCcEE-eccccceEeeCcccccCcCccccceeEEcCCCCCc
Q 009410 278 LAEFVNTPLYVVHVMS----------MDAMEEIAKARKAGQRVI-GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346 (535)
Q Consensus 278 ~~~~~~~~~~~~H~~~----------~~~~~~~~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 346 (535)
...+......|+.. ....+.+..+++.|+.+. .++ +..
T Consensus 205 --~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g-----------------------------~s~ 253 (379)
T PRK12394 205 --SLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANG-----------------------------RSH 253 (379)
T ss_pred --HhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCC-----------------------------ccc
Confidence 11111223455533 111356677788886542 221 111
Q ss_pred ccHHHHHHHHhcCC-eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 347 GHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 347 ~~~~~~~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
.+...+++++++|+ ++++|||+.+.+.... ++ ..+..+++++. ..+++++++++++|.|||+++|
T Consensus 254 ~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~-----~~--------~~l~~~~~~~~-~~~~~~~~~~~~at~~~a~~~g 319 (379)
T PRK12394 254 FDMNVARRAIANGFLPDIISSDLSTITKLAW-----PV--------YSLPWVLSKYL-ALGMALEDVINACTHTPAVLMG 319 (379)
T ss_pred cchHHHHHHHHCCCCceEEECCCCCCCcccC-----cc--------chHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhC
Confidence 12355778999995 8999999887642211 11 13445555555 4569999999999999999999
Q ss_pred CCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEee----EEEEEEECCEEEEECCe
Q 009410 426 VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWENDE 490 (535)
Q Consensus 426 l~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~----~v~~v~~~Gr~V~~~~~ 490 (535)
++++.|+|++|+.|||+++|.+.++... ++ +.|..+.+ +|..||++|++||++..
T Consensus 320 ~~~~~G~i~~G~~ADl~~~~~~~~~~~~-~d---------~~g~~~~~~~~~~v~~t~v~G~~v~~~~~ 378 (379)
T PRK12394 320 MAAEIGTLAPGAFADIAIFKLKNRHVEF-AD---------IHGETLTGTHVLVPQMTIKSGEILYRQID 378 (379)
T ss_pred CCCCCCccCCCCccCEEEEecCcCccee-cc---------CCCCEEEeeeecceEEEEECCEEEEecCC
Confidence 9657899999999999999988765432 21 34544455 79999999999998643
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=294.10 Aligned_cols=355 Identities=20% Similarity=0.194 Sum_probs=225.5
Q ss_pred eeeeEEEeCCEEEEeeCCCCC----CCCceEEecCCCEEeecccccccccccccC-CC--------------------Cc
Q 009410 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET 123 (535)
Q Consensus 69 ~~~~I~I~~G~I~~Vg~~~~~----~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~--------------------~~ 123 (535)
++++|+|+||+|++||+.... +.+.++||++|++|+|||||+|+|+..... |. .+
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 468999999999999985332 335789999999999999999999865311 10 01
Q ss_pred hhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceee---ee--ecCChhhHHHHHHHHHH
Q 009410 124 IDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM---AI--TKWDEVVSDEMEVMVKE 194 (535)
Q Consensus 124 ~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~ 194 (535)
++... .....++++||||++|+............+...+.+.+......... +. .....+..+...+++++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 164 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIER 164 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 11111 22356789999999998643322233445555555554333222111 00 01112233344444422
Q ss_pred -cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhc-CCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
.+...+++.+.++....++++.++++++.|+++ |+++++|+. +........+. .|.. + .
T Consensus 165 ~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~---~~~~---------~------~ 226 (401)
T TIGR02967 165 WHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKEL---FPEA---------K------D 226 (401)
T ss_pred HhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHH---cCCC---------C------c
Confidence 344457777777777888999999999999999 999999985 44333333221 1211 0 0
Q ss_pred HHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHH
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (535)
..+.++-....+.++.+.|+...++ ++++++++.|+.++.||... +..+... .+
T Consensus 227 ~~~~l~~~g~lg~~~~~~H~~~~~~-~~~~~l~~~g~~v~~~P~~~-------------~~~~~g~------------~~ 280 (401)
T TIGR02967 227 YLDVYDHYGLLGRRSVFAHCIHLSD-EECQRLAETGAAIAHCPTSN-------------LFLGSGL------------FN 280 (401)
T ss_pred HHHHHHHCCCCCCCeEEEecccCCH-HHHHHHHHcCCeEEEChHHH-------------HHhccCC------------CC
Confidence 1111222233466788999998887 88999999999999998752 1111111 22
Q ss_pred HHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 352 ~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
+++++++|+++++|||+...... . +|. +++......++. ..++++.++|+++|.|||+++|+++++|
T Consensus 281 ~~~~~~~Gv~v~lGtD~~~~~~~-~-----~~~------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~~A~~lg~~~~~G 347 (401)
T TIGR02967 281 LKKALEHGVRVGLGTDVGGGTSF-S-----MLQ------TLREAYKVSQLQ-GARLSPFEAFYLATLGGARALDLDDRIG 347 (401)
T ss_pred HHHHHHCCCeEEEecCCCCCCCc-C-----HHH------HHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHHhCCcCCcc
Confidence 78899999999999996432111 1 111 222222222222 3469999999999999999999977899
Q ss_pred cccCCCCccEEEEcCCCceeee----c-CCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 432 AILVGSDADIIIFNPNSSFEIT----A-RSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~----~-~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
+|++||.||||++|.+.+...+ . ....++.....|.+. ..+|+.|||+|
T Consensus 348 ~i~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~v~~v~v~G 401 (401)
T TIGR02967 348 NFEPGKEADFVVLDPAATPLLALRFEGADTLEDKLFKLMYLGD--DRNVAETYVAG 401 (401)
T ss_pred ccCCCCccCEEEEcCCCCcccccccccccchhhHHHHheeecC--ccceeEEEeCC
Confidence 9999999999999987653221 0 011233334455443 45899999998
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=285.83 Aligned_cols=353 Identities=18% Similarity=0.191 Sum_probs=240.0
Q ss_pred EEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccccc----CCCCc--hhhhHH
Q 009410 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF----MGSET--IDDFFS 129 (535)
Q Consensus 56 vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~----~g~~~--~~~~~~ 129 (535)
+|+|++|+++++...++|.|+||+|++|++... ...++||++|++|+|||||+|+|..... .+... .+.+..
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~~~~~~~~~~~ 78 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGVDWPIDAAIVE 78 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEeccEEEcccCccccCcCCCCCCCcchHHHHHH
Confidence 489999998777666799999999999997432 2466899999999999999999987720 03211 266778
Q ss_pred HHHHHHhCCcEEEeccccCC----C-C---ChHHHHHHHHHHhcc--cccccceeeeeecCChhhHHHHHHHHHHcCCCE
Q 009410 130 GQAAALAGGTTMHIDFVIPI----N-G---SLTAGFEAYEKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~----~-~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (535)
..++++++||||++|+.... . . .....++.......+ ..+++++|.+......+..+++..+. +.|...
T Consensus 79 ~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~-~~g~~~ 157 (376)
T TIGR02318 79 HDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELI-DDPRVD 157 (376)
T ss_pred HHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHh-cCCCcC
Confidence 88899999999999995322 1 1 222233222333333 77899999988766666788888887 789999
Q ss_pred EEEEeecCCC--CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHH
Q 009410 200 FKFFMAYKGS--FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (535)
Q Consensus 200 ik~~~~~~~~--~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (535)
+|.|++..+. +..+.+.+.+.+.. +.| ..|++.......... ..+.. ..+.+.++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~---~~~~~-------------~~e~i~~~v~ 216 (376)
T TIGR02318 158 LISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIA---RRAEY-------------GLANRSEIAA 216 (376)
T ss_pred EEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHH---HHhhc-------------cHHHHHHHHH
Confidence 9999875432 24566666666654 555 667776544332221 11110 1477889999
Q ss_pred HHHhcCCCEEEEEcc-CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccce-eEEcC-CCCCccc--HHHH
Q 009410 278 LAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK-YVMSP-PIRASGH--NKAL 352 (535)
Q Consensus 278 ~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~~r~~~~--~~~~ 352 (535)
+++..+.++ ..|.. .. +.+..+++.|+.++-.+ ++.+.... -...|.. .+..| +.|.... ..++
T Consensus 217 ~A~~~G~~v-~sH~~~~~---e~i~~a~~~Gv~~~E~~------~t~e~a~~-~~~~G~~v~~~~p~~~r~~~~~~~~~l 285 (376)
T TIGR02318 217 LARARGIPL-ASHDDDTP---EHVAEAHDLGVTISEFP------TTLEAAKE-ARSLGMQILMGAPNIVRGGSHSGNLSA 285 (376)
T ss_pred HHHHCCCeE-EEecCCCH---HHHHHHHHCCCChhccC------CCHHHHHH-HHHcCCeEEECCccccccccccchHHH
Confidence 999999997 77884 43 45677777787433211 11111110 0011222 22223 3343332 6789
Q ss_pred HHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 353 ~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
+++++.|+.++++||+.|.. .+...+.......++++.++++++|.|||+++|++ ++|+
T Consensus 286 ~~~~~~G~~~~l~SD~~p~~--------------------~l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~-~~G~ 344 (376)
T TIGR02318 286 RELAHEGLLDVLASDYVPAS--------------------LLLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLS-DRGS 344 (376)
T ss_pred HHHHHCCCcEEEEcCCCcHH--------------------HHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCC-CCCc
Confidence 99999999999999986631 11222222233447999999999999999999995 6799
Q ss_pred ccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 433 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 433 I~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
|++|++|||+++|.+.. ...+..||++|++||
T Consensus 345 I~~G~~ADlvvvd~~~~----------------------~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 345 IAPGKRADLVRVHRVDG----------------------VPRIRAVWRAGRRVY 376 (376)
T ss_pred CCCCCcccEEEEcCCCC----------------------CccceEEEECCEEeC
Confidence 99999999999996311 137889999999986
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=291.25 Aligned_cols=356 Identities=17% Similarity=0.143 Sum_probs=226.3
Q ss_pred eeeeEEEeCCEEEEeeCCCC----CCCCceEEecCCCEEeeccccccccccccc-CCC-C--------------------
Q 009410 69 QIADVYVEDGIVVAVQPNIN----VGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGS-E-------------------- 122 (535)
Q Consensus 69 ~~~~I~I~~G~I~~Vg~~~~----~~~~~~vID~~G~~vlPGlID~H~H~~~~~-~g~-~-------------------- 122 (535)
++++|+|+||+|++||+... .+++.++||++|++|+|||||+|+|++... .|. .
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 57899999999999998532 234578999999999999999999997642 111 0
Q ss_pred chhhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-e----cCChhhHHHHHHHHH
Q 009410 123 TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-T----KWDEVVSDEMEVMVK 193 (535)
Q Consensus 123 ~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~ 193 (535)
+.+.. ......++++||||++|+...........+++..+.+.+..+........ + ....+..+....+.+
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 184 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIE 184 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence 01111 12234568999999998864332234455566666666644432221100 1 001112222222222
Q ss_pred H-cC-CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcC-CeEEEEcCC-hhhHHHHHHHHHHcCCCCcccccccCChhhHH
Q 009410 194 E-KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEG 269 (535)
Q Consensus 194 ~-~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 269 (535)
. .+ ...+...+.++....++++.++++.+.|+++| +++++|+.+ ..+.....+ ..|-. ..
T Consensus 185 ~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~---~~g~~-------~~------ 248 (429)
T cd01303 185 RWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKE---LFPGA-------RD------ 248 (429)
T ss_pred HHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHH---HcCCC-------CC------
Confidence 1 22 14466666777778889999999999999999 999999954 332222211 11100 00
Q ss_pred HHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccH
Q 009410 270 EATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 349 (535)
..+.++-....+.++.+.|+...++ ++++++++.|+.++.||..+. ..+...
T Consensus 249 --p~~~l~~~G~l~~~~~l~H~~~l~~-~~~~~l~~~g~~v~~~P~sn~-------------~l~~g~------------ 300 (429)
T cd01303 249 --YLDVYDKYGLLTEKTVLAHCVHLSE-EEFNLLKERGASVAHCPTSNL-------------FLGSGL------------ 300 (429)
T ss_pred --HHHHHHHCCCCCCCcEEEeCCCCCH-HHHHHHHHcCCEEEECccchh-------------hhccCC------------
Confidence 1112222233456788999999887 889999999999999987521 111111
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-----cCCCCHHHHHHHHhHHHHHHc
Q 009410 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-----SGQISVTDYVRLTSTECARIF 424 (535)
Q Consensus 350 ~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-----~~~ls~~eal~~~T~~~A~~l 424 (535)
..+++++++|+++++|||+...+.. ++|. ++.+....++... ..+++++++|+++|.+||+++
T Consensus 301 ~~~~~~~~~Gv~v~lGtD~~~~~~~------d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~l 368 (429)
T cd01303 301 FDVRKLLDAGIKVGLGTDVGGGTSF------SMLD------TLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEAL 368 (429)
T ss_pred CCHHHHHHCCCeEEEeccCCCCCCc------cHHH------HHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHc
Confidence 2388999999999999997532211 1222 2232222222221 235899999999999999999
Q ss_pred CCCCCCccccCCCCccEEEEcCCCceee-ec----CCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 425 NVYPRKGAILVGSDADIIIFNPNSSFEI-TA----RSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 425 gl~~~~GsI~~Gk~ADlvvld~~~~~~i-~~----~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
|+++++|+|++||+||||++|.+++... +. ..+.++.....|.+. ..+|+.|||+|
T Consensus 369 g~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~~~~~~~~d~~~~lV~~~~--~~~V~~v~V~G 429 (429)
T cd01303 369 GLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRVESLEEALFKFLYLGD--DRNIREVYVAG 429 (429)
T ss_pred CCCCCCcCcCCCCccCEEEEcCCCccccccccccccchhhHHHHHeeeCC--CCCeeEEEeCC
Confidence 9988899999999999999998876433 21 011234444555543 45899999998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=291.14 Aligned_cols=350 Identities=20% Similarity=0.196 Sum_probs=213.2
Q ss_pred EEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC--------------
Q 009410 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------------- 121 (535)
Q Consensus 57 i~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~-------------- 121 (535)
|+|++|+|+. ..+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+...+. +.
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAII 80 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCCCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHH
Confidence 7899999974 5789999999999999987654557899999999999999999999976311 11
Q ss_pred --------Cchhhh----HHHHHHHHhCCcEEEeccccCCCC---ChHHHH-HHHHHHhcccccccceeeeee-cCChhh
Q 009410 122 --------ETIDDF----FSGQAAALAGGTTMHIDFVIPING---SLTAGF-EAYEKKAKNSCMDYGFHMAIT-KWDEVV 184 (535)
Q Consensus 122 --------~~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (535)
.++++. ...+..++++||||++++...... ...... +.......+............ ....+.
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
T cd01293 81 AWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGG 160 (398)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCH
Confidence 111121 223456789999999876543221 111122 211111111111100000000 011334
Q ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccC
Q 009410 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSR 263 (535)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 263 (535)
.+.+++.. +.+.+.++.+ .+......+++.++++++.|+++|+++.+|+..... ...
T Consensus 161 ~~~v~~~~-~~g~~~~~~~-~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~-------------------- 218 (398)
T cd01293 161 EELMREAL-KMGADVVGGI-PPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGSR-------------------- 218 (398)
T ss_pred HHHHHHHH-HhCCCEEeCC-CCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcchh--------------------
Confidence 45555555 4455544322 222234567899999999999999999999854321 100
Q ss_pred ChhhHHHHHHHHHHHHHhcC--CCEEEEEccCHHH------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccc
Q 009410 264 PPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (535)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~~~~------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (535)
.+.+.++.....+ .++.+.|+..... .+.++++++.|+.+++||.....+..... .+..
T Consensus 219 -------~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~----~~~~-- 285 (398)
T cd01293 219 -------TLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGRED----TTPK-- 285 (398)
T ss_pred -------HHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhccccc----CCCC--
Confidence 1112222233333 3577899876531 25689999999999999876432211100 0000
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC--CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCC----CH
Q 009410 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHCA--FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQI----SV 409 (535)
Q Consensus 336 ~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~--~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l----s~ 409 (535)
.....++++++++|+++++|||+.. +..... .++|. .+... ....++ +.
T Consensus 286 ----------~~~~~~~~~~~~~Gv~v~lGTD~~~~~~~~~~~---~~~~~--------~~~~~----~~~~~~~~~~~~ 340 (398)
T cd01293 286 ----------RRGVTPVKELRAAGVNVALGSDNVRDPWYPFGS---GDMLE--------VANLA----AHIAQLGTPEDL 340 (398)
T ss_pred ----------CCCCCcHHHHHHCCCeEEECCCCCCCCCcCCCC---CCHHH--------HHHHH----HHHHcCCChhhH
Confidence 0112348999999999999999742 111000 00011 11111 111234 34
Q ss_pred HHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 410 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 410 ~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
+++|+++|.|+|+++|+ +.|+|++||.||||++|.|++.++.. ...++..||++|+++
T Consensus 341 ~~al~~aT~~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~~~~~~----------------~~~~~~~v~~~G~~~ 398 (398)
T cd01293 341 ALALDLITGNAARALGL--EDYGIKVGCPADLVLLDAEDVAEAVA----------------RQPPRRVVIRKGRVV 398 (398)
T ss_pred HHHHHhcChhhhhhcCC--cCcccccCCcceEEEECCCCHHHHHh----------------cCCCccEEEECCEEC
Confidence 78999999999999999 57999999999999999987654421 014789999999975
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=287.28 Aligned_cols=346 Identities=20% Similarity=0.187 Sum_probs=215.9
Q ss_pred CcccEEEEccEEEcCCC--------ceeeeEEEeCCEEEEeeCCCCCC--CCceEEecCCCEEeecccccccccccccC-
Q 009410 51 SSSKILIKGGTVVNAHH--------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFM- 119 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~--------~~~~~I~I~~G~I~~Vg~~~~~~--~~~~vID~~G~~vlPGlID~H~H~~~~~~- 119 (535)
|+++++|+|++|++++. .++++|+|+||||++|++..+.+ .+.++||+.|++|||||||+|+|+.....
T Consensus 1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccccccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence 35779999999998753 24789999999999999865433 23689999999999999999999975411
Q ss_pred C---------C---------------------Cchhhh----HHHHHHHHhCCcEEEeccccCCCC--ChHHHHHHHHHH
Q 009410 120 G---------S---------------------ETIDDF----FSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK 163 (535)
Q Consensus 120 g---------~---------------------~~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~ 163 (535)
+ . .+++++ ...+..++++||||+.++...... .....++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVARRL 160 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 0 0 011111 122345689999999976422111 112223333333
Q ss_pred hcccccccce-ee---eeec---CC-hhhHHH----HHHH-HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCe
Q 009410 164 AKNSCMDYGF-HM---AITK---WD-EVVSDE----MEVM-VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230 (535)
Q Consensus 164 ~~~~~~~~~~-~~---~~~~---~~-~~~~~~----~~~~-~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~ 230 (535)
+.+..+.+.. .. .... .. .+..+. +.+. ....++..++.+.. ....+.+.++++++.|+++|++
T Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~~~~A~~~g~~ 237 (406)
T PRK09356 161 GEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCE---TGAFSVEQSERVLEAAKALGLP 237 (406)
T ss_pred hhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEec---CCCCCHHHHHHHHHHHHHCCCC
Confidence 3222111110 00 0000 01 111111 1111 11234556655432 2346799999999999999999
Q ss_pred EEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcE
Q 009410 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRV 310 (535)
Q Consensus 231 v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v 310 (535)
+.+|+....... ..+.. ...+ ...+.|+...++ ++++++++.|+.+
T Consensus 238 v~~H~~~~~~~~-~~~~~-------------------------------~~~~-~~~~~H~~~~~~-~~~~~la~~g~~~ 283 (406)
T PRK09356 238 VKIHAEQLSNLG-GAELA-------------------------------AEYG-ALSADHLEYLDE-AGIAAMAEAGTVA 283 (406)
T ss_pred EEEEEecccCCC-HHHHH-------------------------------HHcC-CcEehHhhcCCH-HHHHHHHHhCCEE
Confidence 999995421100 01110 1112 124668777766 7899999999999
Q ss_pred EeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchH
Q 009410 311 IGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI 390 (535)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~ 390 (535)
+.||..... .+.. ...++++++++|+++++|||+.+... ++.
T Consensus 284 ~~~P~~~~~-------------l~~~-----------~~~~~~~l~~~Gi~v~lgtD~~~~~~--------~~~------ 325 (406)
T PRK09356 284 VLLPGAFYF-------------LRET-----------QYPPARLLRDAGVPVALATDFNPGSS--------PTE------ 325 (406)
T ss_pred EECccchhh-------------cCcc-----------cCchHHHHHHCCCeEEEeCCCCCCCC--------hhH------
Confidence 888874211 1000 01237888999999999999744111 111
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCee
Q 009410 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 470 (535)
Q Consensus 391 ~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~ 470 (535)
.+...+.......+++++++|+++|.|||+++|+++++|+|++||.|||||+|.+++..+ ++..
T Consensus 326 --~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~------------~~~~-- 389 (406)
T PRK09356 326 --SLLLAMNMACTLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAEL------------PYHF-- 389 (406)
T ss_pred --HHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhh------------hhhh--
Confidence 122222222234579999999999999999999988899999999999999998765322 1111
Q ss_pred EeeEEEEEEECCEEEEE
Q 009410 471 VKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 471 ~~~~v~~v~~~Gr~V~~ 487 (535)
...+|..||++|++||+
T Consensus 390 ~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 390 GVNPVETVVKNGEVVVD 406 (406)
T ss_pred CCCCccEEEECCEEeeC
Confidence 13589999999999984
|
|
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=284.05 Aligned_cols=354 Identities=16% Similarity=0.203 Sum_probs=225.7
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|+|..+...++|.|+||+|++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~P-- 147 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICP-- 147 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCc--
Confidence 56899999999997777778999999999999974211 1347899999999999999999998755
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEeccccCCC----C----ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN----G----SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+. .++++++||||+++++..+. . .....++.+.+.....+++++++... +....+++.++
T Consensus 148 g~---------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g---~~~~~~~L~el 215 (573)
T PRK13206 148 QI---------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNVALLGKG---NTVSAEALWEQ 215 (573)
T ss_pred hH---------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCceeEEEecCc---CcCCHHHHHHH
Confidence 21 37889999999999732221 1 11112333344444466777776532 11223567777
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
. +.|+.++|++.+| ..+++.+.++++.|++++.++.+|+++..+..
T Consensus 216 ~-~aGA~GfKi~~d~----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g----------------------------- 261 (573)
T PRK13206 216 L-RGGAGGFKLHEDW----GSTPAAIDACLRVADAAGVQVALHSDTLNEAG----------------------------- 261 (573)
T ss_pred H-HCCCcEEeecCcc----CCCHHHHHHHHHHHHHhCCEEEEECCCccccc-----------------------------
Confidence 6 7899999997544 37899999999999999999999998765321
Q ss_pred HHHHHHHHHhcCCCEEEEEccCHHHH---HHHHHHHHcCC-cEEecccc-c-------eE-------eeCcccccCcCcc
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSMDAM---EEIAKARKAGQ-RVIGEPVV-S-------GL-------VLDDSWLWHSDFV 332 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~g~-~v~~~~~~-~-------~~-------~~~~~~~~~~~~~ 332 (535)
+.+. .++...|..+|+.|....... +.++.....++ +-+.+|+. + ++ +++++..++.-|.
T Consensus 262 ~~E~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa 340 (573)
T PRK13206 262 FVED-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFA 340 (573)
T ss_pred hhhH-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCCCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhh
Confidence 1111 234456888999998764321 33333332231 11222221 1 10 1122211111111
Q ss_pred ccceeEEcCCCCCcccH-HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHH------HhcC
Q 009410 333 TAAKYVMSPPIRASGHN-KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTM------VESG 405 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~-~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~------~~~~ 405 (535)
..|...++ .+-..+++.|+..+++||++......... .++|. +. ..+..+- ....
T Consensus 341 ---------~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~~-~~~~q----~a----~~~~~rr~~l~g~~~~~ 402 (573)
T PRK13206 341 ---------ESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEVV-LRTWQ----TA----HVMKRRRGALPGDGRAD 402 (573)
T ss_pred ---------hhhccceeeccCchHhhCCcEEeccCCccccccccchh-hhHHH----HH----HHHHhccCCCCCCCccc
Confidence 01111111 12234788999999999976422111000 00111 11 1111000 0134
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 406 QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 406 ~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
.++..++|++.|.|||+++|+++.+|+|++||.||||+||.+.+ ..++..||++|+++
T Consensus 403 ~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f----------------------~~~~~~ti~~G~iv 460 (573)
T PRK13206 403 NNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFF----------------------GVRPHAVLKGGAIA 460 (573)
T ss_pred chhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECcccc----------------------CCCccEEEECCEEE
Confidence 58999999999999999999988899999999999999996532 12678999999999
Q ss_pred EEC-Ceeccc
Q 009410 486 WEN-DELNVV 494 (535)
Q Consensus 486 ~~~-~~~~~~ 494 (535)
|.. |.....
T Consensus 461 ~~~~gd~nas 470 (573)
T PRK13206 461 WAAMGDANAS 470 (573)
T ss_pred EecCCChhhc
Confidence 987 555444
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=282.56 Aligned_cols=352 Identities=19% Similarity=0.208 Sum_probs=224.8
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEecCCCEEeecccccccccccccCCC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~----------~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~ 121 (535)
.++++|+|++|+++.+...++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+ +.
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P--~~ 143 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP--QQ 143 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc--cH
Confidence 57899999999998666789999999999999974211 1367899999999999999999998654 21
Q ss_pred CchhhhHHHHHHHHhCCcEEEeccccCCC----C----ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHH
Q 009410 122 ETIDDFFSGQAAALAGGTTMHIDFVIPIN----G----SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (535)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (535)
.++++++||||++++...+. . .....++...+......++++++... ..+..+++.++.
T Consensus 144 ---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g---~~~~~~~L~e~i- 210 (568)
T PRK13207 144 ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLGKG---NASLPEALEEQI- 210 (568)
T ss_pred ---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCceEEEEcCC---CcccHHHHHHHH-
Confidence 47789999999999843221 1 11223444333333345566555421 223456777776
Q ss_pred HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHH
Q 009410 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (535)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 273 (535)
+.|+.++|++.++ ..+++.+.++++.|++++.++.+|+...........
T Consensus 211 ~aGA~gfKi~~d~----g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~--------------------------- 259 (568)
T PRK13207 211 EAGAIGLKLHEDW----GATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVED--------------------------- 259 (568)
T ss_pred HcCCCEEeecCCC----CCCHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHH---------------------------
Confidence 7899999998654 248899999999999999999999976543211111
Q ss_pred HHHHHHHhcCCCEEEEEccC---HHHHHHHHHHHHcCCcEE-ecccc-c-------eE-------eeCcccccCcCcccc
Q 009410 274 RAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGQRVI-GEPVV-S-------GL-------VLDDSWLWHSDFVTA 334 (535)
Q Consensus 274 ~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~g~~v~-~~~~~-~-------~~-------~~~~~~~~~~~~~~~ 334 (535)
.+....+..+|..|... ....+.++.+...|+-.. .+|+. + ++ +++++..++.-|.
T Consensus 260 ---t~~a~~g~~iH~~H~egaggghapdii~~~~~~~v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a-- 334 (568)
T PRK13207 260 ---TIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFA-- 334 (568)
T ss_pred ---HHHhcCCCEEEEEeecCCCcCCchHHHHHhhcCCCccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhh--
Confidence 12233466778888652 222367777777764322 22321 1 11 1222211111111
Q ss_pred ceeEEcCCCCCcccHHH-HHHHHhcCCeEEEeCCCCCCCh-hhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCC-----
Q 009410 335 AKYVMSPPIRASGHNKA-LQAALATGILQLVGTDHCAFNS-TQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQI----- 407 (535)
Q Consensus 335 ~~~~~~p~~r~~~~~~~-~~~~l~~Gv~~~lgtD~~~~~~-~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l----- 407 (535)
..|...++.+ -.-+++.|+..+++||+..... ... ++. +.+...... ...+.+
T Consensus 335 -------~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~~-----~~r----~~q~A~~r~----~~~G~~~~d~~ 394 (568)
T PRK13207 335 -------ESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGEV-----IIR----TWQTAHKMK----VQRGPLPGDSG 394 (568)
T ss_pred -------hhhccceeecccchhhhCCCEEEecCCcccccccccc-----hhH----HHHHHHHHH----HccCCCCcccc
Confidence 0111111111 2237888999999999754311 010 111 112211111 111222
Q ss_pred --CHHHH---HHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 408 --SVTDY---VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 408 --s~~ea---l~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
+.+.+ |+++|.|||+++|+++.+|+|++||.||||||+.+.+ ..++..||++|
T Consensus 395 ~~~n~ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~f----------------------~~~~~~ti~~G 452 (568)
T PRK13207 395 RNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAFF----------------------GVKPELVLKGG 452 (568)
T ss_pred cCccchHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchhc----------------------CCCceEEEECC
Confidence 22233 9999999999999988899999999999999996532 13678999999
Q ss_pred EEEEEC-CeecccCC
Q 009410 483 RVVWEN-DELNVVPG 496 (535)
Q Consensus 483 r~V~~~-~~~~~~~~ 496 (535)
+++|.. |.+.....
T Consensus 453 ~iv~~~~gd~~as~p 467 (568)
T PRK13207 453 MIAWAPMGDPNASIP 467 (568)
T ss_pred EEEEecCCCccccCC
Confidence 999998 87777653
|
|
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=279.91 Aligned_cols=344 Identities=18% Similarity=0.189 Sum_probs=222.0
Q ss_pred cccEEEEccEEEcCC-CceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeeccccccccccccc
Q 009410 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~-~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~ 118 (535)
..+++|+|++|+|+. +...++|.|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~P- 145 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSA- 145 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCc-
Confidence 578999999999864 45688999999999999975311 1357899999999999999999998754
Q ss_pred CCCCchhhhHHHHHHHHhCCcEEEeccccCC----CCChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHHH
Q 009410 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI----NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (535)
Q Consensus 119 ~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (535)
+. .++++++||||++++...+ .......++.+.+......++++++.... .....++.++. +
T Consensus 146 -g~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~---~s~~aeL~eli-~ 211 (569)
T PRK13308 146 -QL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGN---SSKPAALIEQV-E 211 (569)
T ss_pred -cH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCc---ccCHHHHHHHH-H
Confidence 21 3778999999999863221 11344455555555445567777765322 12356777776 7
Q ss_pred cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHH
Q 009410 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (535)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 274 (535)
.|+.++|++.++ ..+++.+.++++.|+++++++.+|+...++.....
T Consensus 212 aGA~GfKi~ed~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E----------------------------- 258 (569)
T PRK13308 212 AGACGLKIHEDW----GAMPAAIDTCLEVADEYDFQVQLHTDTLNESGFVE----------------------------- 258 (569)
T ss_pred CCCCEEeecCCC----CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcchHHH-----------------------------
Confidence 899999987554 34889999999999999999999997754321111
Q ss_pred HHHHHHhcCCCEEEEEccCHH---HHHHHHHHHHcCC-cEEecccc-c-------eE-------eeCcccccCcCccccc
Q 009410 275 AIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQ-RVIGEPVV-S-------GL-------VLDDSWLWHSDFVTAA 335 (535)
Q Consensus 275 ~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~g~-~v~~~~~~-~-------~~-------~~~~~~~~~~~~~~~~ 335 (535)
. .++...|..+|+.|..... ..+.++.....++ +-+.+|+. + ++ +++++..++.-|.
T Consensus 259 ~-t~~a~~gr~iH~~H~egaggghapd~l~~~~~~n~lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa--- 334 (569)
T PRK13308 259 D-TLAAIGGRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFA--- 334 (569)
T ss_pred H-HHHHhcCCeEEEEeccCCccCchhHHHHHhCCCCccCCCCCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhh---
Confidence 1 2233447889999987643 2233443333332 11222221 1 11 1222221111111
Q ss_pred eeEEcCCCCCcccHHHHH-HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-cCCCCHHH--
Q 009410 336 KYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-SGQISVTD-- 411 (535)
Q Consensus 336 ~~~~~p~~r~~~~~~~~~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~ls~~e-- 411 (535)
..|...++.+.. -+++.|+...++||+..-..-.. .+. +.-....++.. .+.|+.++
T Consensus 335 ------~srir~~ti~ae~~l~d~g~~s~~~sds~~mgr~~e------------~i~-r~~q~a~~~~~~~g~l~~~~~~ 395 (569)
T PRK13308 335 ------ESRIRAQTIAAEDVLHDIGAISMLGSDSQGMGRIAE------------VIA-RTWQLASKMKDQRGPLPEDRGT 395 (569)
T ss_pred ------hhhccceeeccCchhhcCCcEEEEecchHHHhHHHH------------HHH-HHHHHHHHHhhcCCCCCccccc
Confidence 111111111112 26778999999999754322110 001 11111112222 45577765
Q ss_pred ---------HHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 412 ---------YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 412 ---------al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
.|+++|.|||+++|+++++|+|++||.||||+|+.+.+ ..++..||++|
T Consensus 396 ~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~f----------------------gv~p~~ti~~G 453 (569)
T PRK13308 396 FADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFF----------------------GIKPELVIKGG 453 (569)
T ss_pred CCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCccc----------------------CCCeeEEEECC
Confidence 79999999999999988899999999999999996532 12678999999
Q ss_pred EEEEEC
Q 009410 483 RVVWEN 488 (535)
Q Consensus 483 r~V~~~ 488 (535)
+++|..
T Consensus 454 ~iv~~~ 459 (569)
T PRK13308 454 FPAWAA 459 (569)
T ss_pred EEEEec
Confidence 999875
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=278.26 Aligned_cols=351 Identities=17% Similarity=0.181 Sum_probs=226.9
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|++..+...++|.|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P-- 141 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICP-- 141 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCc--
Confidence 56899999999997766789999999999999875311 1357899999999999999999998654
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEeccccCC-------CC-ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+. ..+++++||||+++++..+ .. .....++...+......++++++... ..+..+++.++
T Consensus 142 ~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~g~~gkg---~~~~l~eL~e~ 209 (567)
T cd00375 142 QQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIGFLGKG---NGSSPDALAEQ 209 (567)
T ss_pred cH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCceEEEEecC---ccccHHHHHHH
Confidence 21 4678999999999963221 11 23455555555555556777766432 22345667777
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
. +.|+.++|++.+| ..++..+.++++.|.+++.++.+|+.+..+..
T Consensus 210 ~-~aGA~GfK~~eD~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g----------------------------- 255 (567)
T cd00375 210 I-EAGACGLKLHEDW----GATPAAIDTCLSVADEYDVQVAIHTDTLNESG----------------------------- 255 (567)
T ss_pred H-HcCCEEEEecCCC----CCCHHHHHHHHHHHHhhCCEEEEECCCCCcch-----------------------------
Confidence 6 7899999987554 25899999999999999999999997754321
Q ss_pred HHHHHHHHHhcCCCEEEEEccCHHHH---HHHHHHHHcCC-cEEecccc-c-------eE-------eeCcccccCcCcc
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSMDAM---EEIAKARKAGQ-RVIGEPVV-S-------GL-------VLDDSWLWHSDFV 332 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~~~~---~~~~~~~~~g~-~v~~~~~~-~-------~~-------~~~~~~~~~~~~~ 332 (535)
..+. .++...|..+|..|....... +.++.....++ +-+.+|+. + ++ +++++..++.-|.
T Consensus 256 ~~E~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa 334 (567)
T cd00375 256 FVED-TIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFA 334 (567)
T ss_pred HHHH-HHHHhcCCeEEEEecCCCCcccchHHHHhcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhh
Confidence 1111 234566888999998764322 33333222221 11222221 1 11 1222211111111
Q ss_pred ccceeEEcCCCCCcccHHHHH-HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCC-----
Q 009410 333 TAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQ----- 406 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~~~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~----- 406 (535)
..|...++.+.. -+++.|+...++||+..-..-... . ...+.. ..++....|
T Consensus 335 ---------~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge~-----~-------~r~~q~-a~k~~~~~g~~~~~ 392 (567)
T cd00375 335 ---------ESRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGEV-----I-------LRTWQT-AHKMKAQRGPLPED 392 (567)
T ss_pred ---------hhhccchhhccchhhhccCcEEEEccchhhcCcccee-----e-------echHHH-HHHHHHhcCCCCcc
Confidence 111111222222 366779999999997532211100 0 111111 112222222
Q ss_pred ---CCHHHH---HHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEE
Q 009410 407 ---ISVTDY---VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 480 (535)
Q Consensus 407 ---ls~~ea---l~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~ 480 (535)
.+...+ |++.|.|||+++|+++++|+|++||.||||||+.+.+ ..++.+||+
T Consensus 393 ~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f----------------------~~~p~~vi~ 450 (567)
T cd00375 393 SGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFF----------------------GVKPEMVLK 450 (567)
T ss_pred cccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCccc----------------------CCCeeEEEE
Confidence 455445 9999999999999999999999999999999997633 136789999
Q ss_pred CCEEEEEC-CeecccC
Q 009410 481 GGRVVWEN-DELNVVP 495 (535)
Q Consensus 481 ~Gr~V~~~-~~~~~~~ 495 (535)
+|+++|.. |.+....
T Consensus 451 ~G~iv~~~~gd~nasi 466 (567)
T cd00375 451 GGFIAYAQMGDPNASI 466 (567)
T ss_pred CCEEEEecCCCccccC
Confidence 99999998 7766654
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=277.74 Aligned_cols=342 Identities=20% Similarity=0.272 Sum_probs=215.0
Q ss_pred EEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C-----------
Q 009410 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----------- 120 (535)
Q Consensus 55 ~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g----------- 120 (535)
++|+|++|+++.. ..+++|+|+||+|++|++.. ++.++||++|++| |||||+|+|+..... +
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~---~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~ 77 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV---HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELV 77 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC---CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHc
Confidence 6899999999765 36788999999999999752 3568999999999 999999999986421 0
Q ss_pred ------------CCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-ecCChh
Q 009410 121 ------------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEV 183 (535)
Q Consensus 121 ------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 183 (535)
..++++.+ ..+..++++||||++|+.... ...++...+..........+.... ....++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~----~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~ 153 (375)
T PRK07213 78 KPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGG----IKGINLLKKASSDLPIKPIILGRPTEADENE 153 (375)
T ss_pred cCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcC----hhHHHHHHHHHHcCCCceEEecCCCcccchh
Confidence 01112222 234456899999999974221 111222222111111111100000 011122
Q ss_pred hHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCCccccccc
Q 009410 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALS 262 (535)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~ 262 (535)
..+.++...+. .+++ ..++...++.+.++++++.|+++|+++.+|+.+. ....... ...|..
T Consensus 154 ~~~~~~~~~~~--~~g~----~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~---~~~G~~-------- 216 (375)
T PRK07213 154 LKKEIREILKN--SDGI----GLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSL---EKYGMT-------- 216 (375)
T ss_pred hHHHHHHHHHh--cccc----cccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHH---HHcCCC--------
Confidence 33334433321 2222 2334456789999999999999999999999543 2222222 122321
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
.+..+.+.+- ..+ .+.|+...++ ++++++++.|+.++.||..+. ..+..+
T Consensus 217 --------~v~~~~~~G~--~~~-~i~H~~~~~~-~~i~~la~~g~~v~~~P~sn~-------------~l~~g~----- 266 (375)
T PRK07213 217 --------EIERLINLGF--KPD-FIVHATHPSN-DDLELLKENNIPVVVCPRANA-------------SFNVGL----- 266 (375)
T ss_pred --------hHHHHHhcCC--CCC-EEEECCCCCH-HHHHHHHHcCCcEEECCcchh-------------hhccCC-----
Confidence 1233333221 122 4799998887 889999999999999998632 121211
Q ss_pred CCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHH
Q 009410 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECAR 422 (535)
Q Consensus 343 ~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~ 422 (535)
.++++++++|+++++|||+.+.+.. ++ |. .+. .+....++++.++|+++|.|+|+
T Consensus 267 -------~~v~~l~~~Gv~v~lGTD~~~~~~~-~~-----~~--------e~~----~~~~~~~~~~~~~l~~aT~~gA~ 321 (375)
T PRK07213 267 -------PPLNEMLEKGILLGIGTDNFMANSP-SI-----FR--------EME----FIYKLYHIEPKEILKMATINGAK 321 (375)
T ss_pred -------ccHHHHHHCCCEEEEeeCCCCCchH-hH-----HH--------HHH----HHHHHhCcCHHHHHHHHHHHHHH
Confidence 2389999999999999997543211 11 11 121 12223469999999999999999
Q ss_pred HcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEE
Q 009410 423 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 484 (535)
Q Consensus 423 ~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~ 484 (535)
++|++ +.|+|++||.||||++|.+.+.. ..++.....+.+. ..+|..|||+||.
T Consensus 322 ~lg~~-~~G~l~~G~~ADlvv~d~~~~~p-----~~dp~~~lV~~~~--~~~v~~v~v~G~~ 375 (375)
T PRK07213 322 ILGLI-NVGLIEEGFKADFTFIKPTNIKF-----SKNPYASIITRCE--SGDIVNKILKGKL 375 (375)
T ss_pred HhCCC-CcCCcCCCCcccEEEEcCccccc-----cCCchHHHhhhcc--CCCceEEEECCcC
Confidence 99995 59999999999999999754321 1233333444432 3589999999984
|
|
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=279.00 Aligned_cols=344 Identities=17% Similarity=0.211 Sum_probs=219.8
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|++..+...++|.|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P-- 141 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 141 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCc--
Confidence 56899999999997666788999999999999975321 1357999999999999999999998654
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEeccccCC-----C---CChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----N---GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+. ...++++||||+++++..+ . ......++...+......++++++... ..+..+++.++
T Consensus 142 ~~---------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG---~~~~l~eL~el 209 (568)
T PRK13985 142 QQ---------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLGKG---NSSNDASLADQ 209 (568)
T ss_pred cH---------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCccEEEecCC---ccCCHHHHHHH
Confidence 21 2458999999999852211 1 012323444444444455677766422 11335667777
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
. +.|+.++|++.++ ..++..+.++++.|.+++.++.+|+.+.......
T Consensus 210 ~-~aGA~GfK~~ed~----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~--------------------------- 257 (568)
T PRK13985 210 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCV--------------------------- 257 (568)
T ss_pred H-HcCCEEEEECCcc----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhh---------------------------
Confidence 6 7899999976443 3688999999999999999999999776532111
Q ss_pred HHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCc----EEecccc-ceE--------------eeCcccccCcCcc
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQR----VIGEPVV-SGL--------------VLDDSWLWHSDFV 332 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~----v~~~~~~-~~~--------------~~~~~~~~~~~~~ 332 (535)
+. .++...|..+|+.|.........-+.++-.+.+ -+.+|+. +.. +++++..++.-|.
T Consensus 258 --E~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa 334 (568)
T PRK13985 258 --ED-TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFA 334 (568)
T ss_pred --HH-HHHHhcCCeEEEEeccCCCccchhhHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhh
Confidence 11 234456788899998764322222233322311 1222221 110 1122211111111
Q ss_pred ccceeEEcCCCCCcccHHHHH-HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-c------
Q 009410 333 TAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-S------ 404 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~~~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~------ 404 (535)
..|...+..+.. -+++.|+...++||+..-..-.. .+. ++-....++.. .
T Consensus 335 ---------~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge------------~~~-r~~q~a~k~~~~~g~l~~~ 392 (568)
T PRK13985 335 ---------DSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGE------------VIT-RTWQTADKNKKEFGRLKEE 392 (568)
T ss_pred ---------hhhccccccccCchhhhCCcEEEEeccchhhCcccc------------eee-ehHHHHHHHHHhcCCCCCc
Confidence 111111111222 26778999999999753221110 000 11111112221 2
Q ss_pred ----CCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEE
Q 009410 405 ----GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 480 (535)
Q Consensus 405 ----~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~ 480 (535)
..++.++||++.|.|||+++|+++++|+|++||.||||||+.+++ ..+++.||+
T Consensus 393 ~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f----------------------~~~pe~vi~ 450 (568)
T PRK13985 393 KGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF----------------------GVKPNMIIK 450 (568)
T ss_pred cccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccC----------------------CCChheEEE
Confidence 336677999999999999999999999999999999999997644 136789999
Q ss_pred CCEEEEEC
Q 009410 481 GGRVVWEN 488 (535)
Q Consensus 481 ~Gr~V~~~ 488 (535)
+|+++|..
T Consensus 451 ~G~iv~~~ 458 (568)
T PRK13985 451 GGFIALSQ 458 (568)
T ss_pred CCEEEEcc
Confidence 99999997
|
|
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=278.77 Aligned_cols=356 Identities=17% Similarity=0.182 Sum_probs=228.4
Q ss_pred cccEEEEccEEEcCC-CceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeeccccccccccccc
Q 009410 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~-~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~ 118 (535)
..+++|+|++|+|+. +...++|.|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P- 145 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISP- 145 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCc-
Confidence 568999999999964 45788999999999999974321 1247899999999999999999998765
Q ss_pred CCCCchhhhHHHHHHHHhCCcEEEeccccCC-------C-CChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHH
Q 009410 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI-------N-GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV 190 (535)
Q Consensus 119 ~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+. ..+++.+||||+++++..+ . ......++...+......++++++... .. ....++.+
T Consensus 146 -~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~g~~gkg--~~-~~~~~l~e 212 (572)
T PRK13309 146 -QQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNVGILGKG--NS-YGRGPLLE 212 (572)
T ss_pred -ch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCEEEEcCC--CC-CCHHHHHH
Confidence 21 3578999999999753111 1 123445555555555556777666422 11 22355666
Q ss_pred HHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHH
Q 009410 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270 (535)
Q Consensus 191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 270 (535)
+. +.|+.++|++.++ ..+++.+.++++.|++++.++.+|+.+..+..
T Consensus 213 l~-~aGa~gfk~~~d~----g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~g---------------------------- 259 (572)
T PRK13309 213 QA-IAGVAGYKVHEDW----GATAAALRHALRVADEVDIQVAVHTDSLNECG---------------------------- 259 (572)
T ss_pred HH-hcCcEEEEecCcC----CcCHHHHHHHHHHHHhcCCEEEEeCCccccch----------------------------
Confidence 66 7899999987554 24889999999999999999999986654321
Q ss_pred HHHHHHHHHHhcCCCEEEEEccCHH---HHHHHHHHHHcCC-cEEecccc-c-------eE-------eeCcccccCcCc
Q 009410 271 ATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQ-RVIGEPVV-S-------GL-------VLDDSWLWHSDF 331 (535)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~g~-~v~~~~~~-~-------~~-------~~~~~~~~~~~~ 331 (535)
..+.. +++..+.++|..|..... .-+.++.....++ +-+.+|+. + ++ +++++..++..|
T Consensus 260 -~vE~~-~aa~~grpih~~H~~Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~ 337 (572)
T PRK13309 260 -YVEDT-IDAFEGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAF 337 (572)
T ss_pred -hHHHH-HHHhCCCceeeeeccCcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhH
Confidence 11111 344556777887775532 2123332222221 11222221 1 11 223332222222
Q ss_pred cccceeEEcCCCCCc-ccHHHHHHHHhcCCeEEEeCCCCCCCh-hhhhcCCCCcccCcchHHHHHHHHHH--H----HHh
Q 009410 332 VTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNS-TQKAFGIDDFRKIPNGIEERMHLVWD--T----MVE 403 (535)
Q Consensus 332 ~~~~~~~~~p~~r~~-~~~~~~~~~l~~Gv~~~lgtD~~~~~~-~~~~~~~~~~~~~~~g~~~~l~~~~~--~----~~~ 403 (535)
.. .|.. ....+.+.++++|+.++++||++.... .. +++. +++........ . ...
T Consensus 338 a~---------srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~~-----~p~~----~iq~Av~rk~~~g~l~~~~~~ 399 (572)
T PRK13309 338 AE---------SRVRPETIAAENVLHDMGVISMFSSDSQAMGRVGE-----NWLR----AIQTADAMKAARGKLPEDAAG 399 (572)
T ss_pred HH---------HhhCchhhcchhHHHhCCCEEEEcCCCCcccCCcc-----cHHH----HHHHHHHHHhccCCCCccCCC
Confidence 11 0111 112557789999999999999653211 00 0111 22222111000 0 001
Q ss_pred cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCE
Q 009410 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 483 (535)
Q Consensus 404 ~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr 483 (535)
...++..++|++.|.|||+++|+++++|+|++||.|||||||.+.+ ..++.+||++|+
T Consensus 400 ~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f----------------------~~~~~~vi~~G~ 457 (572)
T PRK13309 400 NDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFF----------------------GAKPKMVIKGGM 457 (572)
T ss_pred cccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhc----------------------CCCccEEEECCE
Confidence 3347788999999999999999999999999999999999997633 136789999999
Q ss_pred EEEEC-CeecccCC
Q 009410 484 VVWEN-DELNVVPG 496 (535)
Q Consensus 484 ~V~~~-~~~~~~~~ 496 (535)
+||.. |.+.....
T Consensus 458 iv~~~~gd~~as~p 471 (572)
T PRK13309 458 INWAAMGDPNASLP 471 (572)
T ss_pred EEEecCCCccccCC
Confidence 99998 87777643
|
|
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=285.66 Aligned_cols=369 Identities=16% Similarity=0.102 Sum_probs=228.9
Q ss_pred EEEEccEEEcCCCceeeeEEEe-CCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC-----------
Q 009410 55 ILIKGGTVVNAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----------- 121 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~-~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~----------- 121 (535)
+.++|+++-++ ..++++|+|+ ||+|++||+....+++ .+..|++|+|||||+|+|+++.+. |.
T Consensus 4 ~~~~~~~~~~~-~~~~~~i~I~~~g~I~~vg~~~~~~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~l 79 (455)
T TIGR02022 4 YWAERALLPDG-WAEGVRIAVAADGRILAIETGVPAAPG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSF 79 (455)
T ss_pred hhHHhccCCCc-cccCceEEEecCCEEEEecCCCCcccc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCCCCH
Confidence 45667766322 2357899999 9999999986543222 234689999999999999977511 10
Q ss_pred -------------CchhhhH----HHHHHHHhCCcEEEeccccCCCC-----------ChHHHHHHHHHHhcccccccce
Q 009410 122 -------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYGF 173 (535)
Q Consensus 122 -------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 173 (535)
.++++++ ....+++++||||+.|+...... .....++...+.+.+..+...+
T Consensus 80 ~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~~ 159 (455)
T TIGR02022 80 WTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPVF 159 (455)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhCCeEEeeeee
Confidence 1122222 22344688999999997432110 1234555566655553332111
Q ss_pred ee-----eeecC---------ChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcC-C
Q 009410 174 HM-----AITKW---------DEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-N 237 (535)
Q Consensus 174 ~~-----~~~~~---------~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~ 237 (535)
+. +.... .++..+....+.+. .+...+.+.+.+++...++++.++++.+ ++++|+++++|+. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~ 238 (455)
T TIGR02022 160 YAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQ 238 (455)
T ss_pred eecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECCC
Confidence 11 00100 01122222222211 1223455555666777889999999999 7899999999994 3
Q ss_pred hhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccc
Q 009410 238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (535)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~ 317 (535)
..+..... ...|... ++.+.+ ....+.++.+.|+...++ ++++.+++.|+.++.||..+
T Consensus 239 ~~e~~~~~---~~~G~~~----------------v~~l~~-~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~sn 297 (455)
T TIGR02022 239 QKEVDDCL---AWSGRRP----------------VEWLLD-HGPVDARWCLVHATHLTD-EETALLARSGAVAGLCPTTE 297 (455)
T ss_pred hHHHHHHH---HHhCCCH----------------HHHHHH-cCCCCCCEEEEEeecCCH-HHHHHHHHcCCeEEEChhhh
Confidence 33322222 2223221 111222 224567888999998887 88999999999999999852
Q ss_pred eEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHH
Q 009410 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLV 397 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 397 (535)
+..+..+ .++++++++|+++++|||+.... + .|. ++.+...
T Consensus 298 -------------~~lg~g~------------~pi~~l~~~Gv~v~lGTD~~~~~-d-------~~~------~m~~a~~ 338 (455)
T TIGR02022 298 -------------ANLGDGI------------FPAVDFVAAGGRFGIGSDSHVVI-D-------VAE------ELRQLEY 338 (455)
T ss_pred -------------ccccCCC------------CCHHHHHHCCCeEEEECCCCCCC-C-------HHH------HHHHHHH
Confidence 2222221 22899999999999999964321 1 122 2333333
Q ss_pred HHHHHh---------cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeec--CCccccCCCCCC
Q 009410 398 WDTMVE---------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITA--RSHHSRLDTNVY 466 (535)
Q Consensus 398 ~~~~~~---------~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~--~~~~~~~~~~p~ 466 (535)
.++... ...++.+++|+++|.|+|+++|+ + .|+|++||+|||||+|.+.+...+. +++ .....|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~---~~~lv~ 413 (455)
T TIGR02022 339 GQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-A-TGGLRAGARADFLTLDGDHPYLAGALGDSL---LDRWLF 413 (455)
T ss_pred HHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-C-CCccCCCCCcCEEEEeCCCcccCCCCchhH---HHHHhh
Confidence 333221 12467889999999999999999 3 8999999999999999875543321 111 112233
Q ss_pred CCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 467 EGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 467 ~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
.+. ..+|..||++|++|+++|+++..+
T Consensus 414 ~~~--~~~V~~v~V~G~~v~~~g~~~~~~ 440 (455)
T TIGR02022 414 AGG--GAAVRDVWVGGRWVVRDGRHALRE 440 (455)
T ss_pred cCC--CCCccEEEECCEEEEECCccccHH
Confidence 322 358999999999999999997543
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=286.60 Aligned_cols=366 Identities=14% Similarity=0.079 Sum_probs=227.1
Q ss_pred cEEEEccEEEcCCCceeeeEEEeC-CEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC----------
Q 009410 54 KILIKGGTVVNAHHQQIADVYVED-GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------- 121 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~-G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~---------- 121 (535)
.++++++.+.++ ..++++|+|+| |+|++||+... ++ .++..|++|+|||||+|+|+++.+. |.
T Consensus 4 ~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~-~~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~~ 78 (456)
T PRK09229 4 TLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAA-PA---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQDS 78 (456)
T ss_pred hHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCC-Cc---cccccCcEEccCcccccccHhhHhhcCcccccCCCCCC
Confidence 455666666333 23678999999 99999998543 22 2456899999999999999875411 10
Q ss_pred --------------CchhhhH----HHHHHHHhCCcEEEeccccCCCC-----------ChHHHHHHHHHHhcccccccc
Q 009410 122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYG 172 (535)
Q Consensus 122 --------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 172 (535)
.++++.+ .....++.+||||+.|+...... .....++...+.+-+..+...
T Consensus 79 l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~~~~~ 158 (456)
T PRK09229 79 FWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLLPV 158 (456)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEEecee
Confidence 0111111 12344688999999987532110 123445555555544322211
Q ss_pred eee--e---eec---------CChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 173 FHM--A---ITK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 173 ~~~--~---~~~---------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
.+. + ... ...+..+..+.+.+. .+...+.+.+.+++...++++.++++++.| ++|+++.+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e 237 (456)
T PRK09229 159 LYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA-APDGPVHIHIAE 237 (456)
T ss_pred eeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh-cCCCceEEEeCC
Confidence 111 0 000 001122222233221 223456666677777788999999999999 999999999943
Q ss_pred -hhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEecccc
Q 009410 238 -GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (535)
Q Consensus 238 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~ 316 (535)
..+.....+ ..|... ++. +.-....+.++.+.|+...++ ++++++++.|+.++.||..
T Consensus 238 ~~~e~~~~~~---~~g~~~----------------~~~-l~~~g~l~~~~~l~H~~~l~~-~d~~~la~~g~~v~~~P~s 296 (456)
T PRK09229 238 QTKEVDDCLA---WSGARP----------------VEW-LLDHAPVDARWCLVHATHLTD-AETARLARSGAVAGLCPTT 296 (456)
T ss_pred CHHHHHHHHH---HcCCCH----------------HHH-HHHcCCCCCCeEEEeeccCCH-HHHHHHHHcCCeEEECchh
Confidence 333322222 223211 111 111234467888999999887 8899999999999999874
Q ss_pred ceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHH
Q 009410 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHL 396 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 396 (535)
++..+... .++++++++|+++++|||+... .+ +|. ++++..
T Consensus 297 -------------n~~lg~g~------------~p~~~l~~~Gv~v~lGtD~~~~-~d-------~~~------~~~~~~ 337 (456)
T PRK09229 297 -------------EANLGDGI------------FPAVDYLAAGGRFGIGSDSHVS-ID-------LVE------ELRLLE 337 (456)
T ss_pred -------------hhhhcCCC------------CCHHHHHHCCCeEEEecCCCCC-CC-------HHH------HHHHHH
Confidence 22222221 2289999999999999996432 11 122 223322
Q ss_pred HHHHHHh---------cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeee--cCCccccCCCCC
Q 009410 397 VWDTMVE---------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT--ARSHHSRLDTNV 465 (535)
Q Consensus 397 ~~~~~~~---------~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~--~~~~~~~~~~~p 465 (535)
..++... ...++..++|+++|.|+|+++|+ ..|+|++||+|||||+|.+.+...+ .+++.. ...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~--~~GsLe~Gk~ADlvvld~~~~~~~~~~~~~~~~---~lv 412 (456)
T PRK09229 338 YGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR--AIGGLAVGARADLVVLDLDHPALAGREGDALLD---RWV 412 (456)
T ss_pred HHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC--CcCCcCCCCccCEEEEeCCCccccCCChhhHHH---HHh
Confidence 2222221 13568899999999999999998 5899999999999999987643221 112211 122
Q ss_pred CCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 466 YEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 466 ~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
|.+. ..+|..||++||+||++|+++
T Consensus 413 ~~~~--~~~V~~v~V~G~~v~~~g~~~ 437 (456)
T PRK09229 413 FAGG--DAAVRDVWVAGRWVVRDGRHR 437 (456)
T ss_pred hcCC--CCCeeEEEECCEEEEECCccC
Confidence 2221 358999999999999999854
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=274.74 Aligned_cols=330 Identities=21% Similarity=0.285 Sum_probs=240.2
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEe-eCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhH
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~V-g~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~ 128 (535)
.++++++|++++|.-+ +..++|+|.+|+|+.| ++.. .++.++||+.|+||.|||||.|.|+..+ ..++..|
T Consensus 23 ~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--~e~~~~iDa~g~yivPGfID~H~HIESS---m~tP~~F- 96 (584)
T COG1001 23 KADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--AEATEVIDAAGRYIVPGFIDAHLHIESS---MLTPSEF- 96 (584)
T ss_pred CCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--cccceeecCCCCEeccceeecceecccc---ccCHHHH-
Confidence 6899999999999765 3588999999999995 4433 4578999999999999999999999886 5678777
Q ss_pred HHHHHHHhCCcEEEe-ccccCCCCChHHHHHHHHHHhcccccccceeeee----ecCC----hhhHHHHHHHHHHcCCCE
Q 009410 129 SGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI----TKWD----EVVSDEMEVMVKEKGINS 199 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~g~~~ 199 (535)
++..+.+|+||++ |.+...+....+.++.+.......++++.++.+. +..+ .-..+.++++.++..+-+
T Consensus 97 --A~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~Vig 174 (584)
T COG1001 97 --ARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEVIG 174 (584)
T ss_pred --HHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCccc
Confidence 7788999999997 6666666677888888888877766666554422 1111 113566777777778888
Q ss_pred EEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
+..++++++... .++.+...+++++++|+++..|++... ...+..+...|+.
T Consensus 175 l~E~Mn~pgVi~-~D~~~l~kl~a~~~~~k~VdGHapgl~--g~~Ln~Y~aaGi~------------------------- 226 (584)
T COG1001 175 LGEMMNFPGVIE-GDPDMLAKLEAARKAGKPVDGHAPGLS--GKELNAYIAAGIS------------------------- 226 (584)
T ss_pred hhhhcCCchhcc-CCHHHHHHHHHHHHcCCeecccCCCCC--hHHHHHHHhcCCC-------------------------
Confidence 888888887666 456677788899999999999998765 3344555555554
Q ss_pred HhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHH-Hhc
Q 009410 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAA-LAT 358 (535)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-l~~ 358 (535)
..|.....+ +.+++++ .|+.+...- |+..+ +...+..+ -+.
T Consensus 227 --------tDHE~~t~E-Ea~~klr-~Gm~i~iRe-------------------GS~a~---------dl~~l~~~i~e~ 268 (584)
T COG1001 227 --------TDHESTTAE-EALEKLR-LGMKIMIRE-------------------GSAAK---------DLAALLPAITEL 268 (584)
T ss_pred --------cCcccCCHH-HHHHHHh-CCcEEEEEc-------------------Cchhh---------hHHHHHHHHhhc
Confidence 245544443 6677664 677765431 11111 11223333 333
Q ss_pred C-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCC
Q 009410 359 G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 437 (535)
Q Consensus 359 G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk 437 (535)
| -+++++||......... +.++..+++.+++++ +++.+|++|+|+|||+.+|+++ +|.|+||+
T Consensus 269 ~~~~~~lcTDD~~p~dl~~--------------eGhld~~vR~Ai~~G-v~p~~a~qmAtiN~A~~~gl~~-~G~iAPG~ 332 (584)
T COG1001 269 GSRRVMLCTDDRHPDDLLE--------------EGHLDRLVRRAIEEG-VDPLDAYQMATINPAEHYGLDD-LGLIAPGR 332 (584)
T ss_pred CCceEEEECCCCChhHhhh--------------cCCHHHHHHHHHHcC-CCHHHHHHHHhcCHHHHcCCcc-cccccCCc
Confidence 4 46999999754332111 346777777777665 9999999999999999999954 99999999
Q ss_pred CccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 438 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 438 ~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
.||||+++.- . .-+|..|+++|++|.++|+.+..
T Consensus 333 ~ADlvi~~DL-~----------------------~~~v~~V~~~G~~v~~~g~~l~~ 366 (584)
T COG1001 333 RADLVILEDL-R----------------------NFKVTSVLIKGRVVAEDGKALIK 366 (584)
T ss_pred cccEEEEccc-c----------------------cCceeEEEECCEEEecCCceecc
Confidence 9999999821 1 12799999999999999985444
|
|
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=281.52 Aligned_cols=368 Identities=15% Similarity=0.081 Sum_probs=222.6
Q ss_pred EEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccC-CCC----
Q 009410 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSE---- 122 (535)
Q Consensus 55 ~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~~---- 122 (535)
.+|+|++|++++. .++++|+|+ |+|++|++.... .++.++||++|++|+|||||+|+|+.+... +..
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 5789999998763 268899999 999999974221 224569999999999999999999975521 110
Q ss_pred ---------------chhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChh
Q 009410 123 ---------------TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (535)
Q Consensus 123 ---------------~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (535)
.++..+ ....+++++||||+.|+.... ...+...+.+.+..+.............+
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~-----~~~~a~~~~GiR~~~~~~~~~~~~~~~~~ 155 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAISSFG-----IDLEICAKSPLRVVFFNEILGSNASAVDE 155 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecch-----hhHHHHHhcCCeEEEEeeeeCCCccchhh
Confidence 011111 123456899999999885321 12344445554433211111100000011
Q ss_pred hHHHHHHHHHH---cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCCC-C-cc
Q 009410 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGIT-G-PE 257 (535)
Q Consensus 184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~~-~-~~ 257 (535)
..+.+....+. ...+.++..+.+++...++++.++++.+.|+++|+++++|+.. ..+.....+. .|.. . ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~---~G~~~~~~~ 232 (408)
T PRK08418 156 LYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEES---KGWFKKFFE 232 (408)
T ss_pred hHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhc---cCchhhhhh
Confidence 11111111111 1234577777888888999999999999999999999999954 4333322221 1210 0 00
Q ss_pred cccccCChhhHHHHHHHHHHHHHhc-CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccce
Q 009410 258 GHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (535)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (535)
.+....++ ..+.++..... +.++.+.|+...++ ++++++++.|+.|+.||.+ ++..+..
T Consensus 233 ~~~~~~~~------~~~pv~~l~~~g~~~~~~~H~~~~~~-~di~~la~~g~~v~~cP~s-------------n~~lg~g 292 (408)
T PRK08418 233 KFLKEPKP------LYTPKEFLELFKGLRTLFTHCVYASE-EELEKIKSKNASITHCPFS-------------NRLLSNK 292 (408)
T ss_pred hhcccccc------cCCHHHHHHHhCCCCeEEEecccCCH-HHHHHHHHcCCcEEECHhH-------------HHHhcCC
Confidence 00000000 00111222222 45788999999887 8999999999999999875 2223332
Q ss_pred eEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009410 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLT 416 (535)
Q Consensus 337 ~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~ 416 (535)
. .++++++++|+++++|||+...+.... .|. ++++....++.. ....+++++|+++
T Consensus 293 ~------------~p~~~~~~~Gi~v~lGtD~~~~~~~~~-----~~~------em~~~~~~~~~~-~~~~~~~~~l~~a 348 (408)
T PRK08418 293 A------------LDLEKAKKAGINYSIATDGLSSNISLS-----LLD------ELRAALLTHANM-PLLELAKILLLSA 348 (408)
T ss_pred C------------ccHHHHHhCCCeEEEeCCCCCCCCCcC-----HHH------HHHHHHHHhccC-CccccHHHHHHHH
Confidence 2 228899999999999999654332221 122 223222221100 1113468999999
Q ss_pred hHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 417 STECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 417 T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
|.|+|+++|++ .|+|++||.||||++|.+.+. .+. .+.|+.......+|+.||++|++|
T Consensus 349 T~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~-~~~-------~~~~~~~~~~~~~v~~v~v~G~~v 407 (408)
T PRK08418 349 TRYGAKALGLN--NGEIKEGKDADLSVFELPEEC-TKK-------EQLPLQFILHAKEVKKLFIGGKEV 407 (408)
T ss_pred HHHHHHHhCCC--CccccCCCccCEEEEeCCCCC-CCh-------hHhHHHHHhccCccceEEECCEEc
Confidence 99999999994 699999999999999976321 110 111222111134899999999987
|
|
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=267.38 Aligned_cols=356 Identities=17% Similarity=0.203 Sum_probs=218.9
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCC---CCce-EEecCCCEEeeccccccccccccc-CCCCchhhhHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVK-VLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFS 129 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~---~~~~-vID~~G~~vlPGlID~H~H~~~~~-~g~~~~~~~~~ 129 (535)
++|+|++|++++.....+|+|+||||++|+++.+.+ .+.+ ++|++|++|+|||||+|+|+.... .+.......+.
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 689999999987667789999999999999875432 1234 556699999999999999987641 11110111223
Q ss_pred HHHHHHhCCcEEEeccccCCCC-----ChHHHHHHHHHHhccccccccee-eeeecCChhhHHHHHHHHHHcCCCEEE-E
Q 009410 130 GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSFK-F 202 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ik-~ 202 (535)
.+..++++||||++|+.+.... ...+..+.....+-+.+...+.+ .+....++.....+.. -....++| +
T Consensus 82 ~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~---~d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL---IDKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee---ehhhcccceE
Confidence 5777899999999998654322 23344555555554433222221 1222223323333322 12344553 6
Q ss_pred EeecCCCCcCCHHHHHHHHHHHHhcC----Ce--EEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHH
Q 009410 203 FMAYKGSFMINDELLIEGFKRCKSLG----AL--AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (535)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 276 (535)
.++.+.....+.+.+.++.+.++..| ++ +++|..+.... ++.++
T Consensus 159 a~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~------------------------------l~~l~ 208 (389)
T TIGR01975 159 AISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRA------------------------------LQPIY 208 (389)
T ss_pred EEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhh------------------------------HHHHH
Confidence 66777667789999999999999998 88 99998654322 22222
Q ss_pred HHHHhcCCCEEEE---EccCH-HHH-HHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHH
Q 009410 277 RLAEFVNTPLYVV---HVMSM-DAM-EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (535)
Q Consensus 277 ~~~~~~~~~~~~~---H~~~~-~~~-~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (535)
+..+..+.+++.. |.... .-. +.++.++ +|..+-.+......++.. ........
T Consensus 209 ~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~-~gg~iDv~~~~~~~~l~~--------------------~~~~~~~~ 267 (389)
T TIGR01975 209 ELVENTDVPITQFLPTHINRNVPLFEAGLEFAK-KGGTIDLTSSIDPQFRKE--------------------GEVAPAEG 267 (389)
T ss_pred HHHHhcCCChhheecCccCCCHHHHHHHHHHHH-hCCcEEEeCCCCccchhc--------------------cccChHHH
Confidence 2233334333332 33221 112 3444444 454443331110000000 00011246
Q ss_pred HHHHHhcCCe---EEEeCCCCCCChhhhhcCCCCcccCcc-hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 352 LQAALATGIL---QLVGTDHCAFNSTQKAFGIDDFRKIPN-GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 352 ~~~~l~~Gv~---~~lgtD~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
++.++++|++ ++++||........... ..+..... +.. .+...++.++..++++++++|+++|.|||++||++
T Consensus 268 ~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~--g~~~~~g~g~~~-sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~ 344 (389)
T TIGR01975 268 IKKALEAGVPLEKVTFSSDGNGSQPFFDEN--GELTGLGVGSFE-TLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLT 344 (389)
T ss_pred HHHHHHcCCCcceEEEEeCCCCCCCccccc--cccccCCcCcHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 8899999997 49999975321110000 00000011 222 23344446666777999999999999999999996
Q ss_pred CCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecc
Q 009410 428 PRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 493 (535)
Q Consensus 428 ~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~ 493 (535)
++|+|++|+.|||+++|.+ ..+..||.+|++++++|++..
T Consensus 345 -~~G~I~~G~~ADlvild~~-------------------------~~i~~v~~~G~~v~~~g~~~~ 384 (389)
T TIGR01975 345 -GKGEISPGNDADLVVLDPD-------------------------LRIHSVIARGKLMVKDGKACV 384 (389)
T ss_pred -CCCeECCCCcCCEEEEcCC-------------------------CCEEEEEECCEEEEECCEEEe
Confidence 7899999999999999965 167899999999999999885
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=277.32 Aligned_cols=348 Identities=17% Similarity=0.167 Sum_probs=209.7
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEecCCCEEeecccccccccccccCCC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~----------~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~ 121 (535)
.++++|+|++|+|..+...++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+ +
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P--~- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISP--Q- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCc--c-
Confidence 56899999999997666789999999999999975321 1357899999999999999999998544 1
Q ss_pred CchhhhHHHHHHHHhCCcEEEeccccCC-C----C---ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHH
Q 009410 122 ETIDDFFSGQAAALAGGTTMHIDFVIPI-N----G---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (535)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~~~-~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (535)
..+.++.+||||+++++... . . ...-......+......++++++... ..+..+.+.++.
T Consensus 142 --------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g---~~~~~~~L~e~i- 209 (567)
T TIGR01792 142 --------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPINFGFTGKG---SGSGPAALIEQI- 209 (567)
T ss_pred --------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCccEEEEeCC---ccchHHHHHHHH-
Confidence 15778999999999964311 0 0 11111222222333345555554311 122345566666
Q ss_pred HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh---HHHHHHHHHHcCCCCcccccccCChhhHHH
Q 009410 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQKRMIELGITGPEGHALSRPPLLEGE 270 (535)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 270 (535)
+.|+.++|.+.. +..+++.+.++++.|++++.++++|+++..+ +....+ +.|
T Consensus 210 ~aGa~gfK~h~~----y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~g~ve~t~~---a~g------------------ 264 (567)
T TIGR01792 210 EAGACGLKVHED----WGATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTIA---AFK------------------ 264 (567)
T ss_pred HcCCcEEEeCCC----CCCCHHHHHHHHHHHHHcCCEEEEeCCCcccchHHHHHHH---HHC------------------
Confidence 578888887543 4579999999999999999999999977665 322222 122
Q ss_pred HHHHHHHHHHhcCCCEEEEEccC---HHHHHHHHHHHHcCC-cEEecccc-c-------eE-------eeCcccccCcCc
Q 009410 271 ATTRAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGQ-RVIGEPVV-S-------GL-------VLDDSWLWHSDF 331 (535)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~g~-~v~~~~~~-~-------~~-------~~~~~~~~~~~~ 331 (535)
+.+++..|... ....+.++.....++ +-+.+|+. + ++ +++++..++.-|
T Consensus 265 ------------~rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~ 332 (567)
T TIGR01792 265 ------------GRTIHTYHTEGAGGGHAPDIIVVVGYNNILPSSTNPTLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAF 332 (567)
T ss_pred ------------CCcchhHhhcCCCCCcHHHHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEEeccCCCCCcccchh
Confidence 23334333322 222233333332231 11122221 1 10 122222111111
Q ss_pred cccceeEEcCCCCCcccHHH-HHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCC--
Q 009410 332 VTAAKYVMSPPIRASGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQIS-- 408 (535)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~-~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls-- 408 (535)
. ..|...++.+ -.-+++.|+...++||+.+...-.. .+...+.... ++....|.-
T Consensus 333 a---------~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~------------~~~r~~q~a~-k~~~~~g~~~~ 390 (567)
T TIGR01792 333 A---------ESRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGE------------VVTRCWQTAD-KMKKQRGPLPG 390 (567)
T ss_pred h---------hhhccceeccccchhhhCCcEEEecCCchhhCcccc------------eeechHHHHH-HHHHhcCCCcc
Confidence 1 1111111111 2236778999999999753211110 0001111111 222222221
Q ss_pred ------HHHH---HHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEE
Q 009410 409 ------VTDY---VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTI 479 (535)
Q Consensus 409 ------~~ea---l~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~ 479 (535)
.+.+ |++.|.|||+++|+++++|+|++||.||||||+.+.+ ..++..||
T Consensus 391 ~~~~~~~~rl~r~L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f----------------------~~~p~~v~ 448 (567)
T TIGR01792 391 DSPGNDNNRVKRYVAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAFF----------------------GVKPDMVL 448 (567)
T ss_pred cccCChhhhHHHHHHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCccc----------------------CCChheEE
Confidence 1222 9999999999999999999999999999999997633 12578999
Q ss_pred ECCEEEEEC-CeecccC
Q 009410 480 AGGRVVWEN-DELNVVP 495 (535)
Q Consensus 480 ~~Gr~V~~~-~~~~~~~ 495 (535)
++|+++|.. |++....
T Consensus 449 ~~G~i~~~~~Gd~~as~ 465 (567)
T TIGR01792 449 KGGLIAWAIMGDPNASI 465 (567)
T ss_pred ECCEEEEEeCCCccccC
Confidence 999999987 7666654
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=275.57 Aligned_cols=349 Identities=17% Similarity=0.105 Sum_probs=218.2
Q ss_pred CCCc-eeeeE-EEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC--------------------
Q 009410 65 AHHQ-QIADV-YVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------------------- 121 (535)
Q Consensus 65 ~~~~-~~~~I-~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~-------------------- 121 (535)
+++. ++++| +|+||+|++||+... .++||++|++|+|||||+|+|+++... |.
T Consensus 4 ~~~~~~~~~i~~v~~g~I~~Vg~~~~----~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~ 79 (418)
T cd01313 4 PEGWERNVRIEVDADGRIAAVNPDTA----TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYR 79 (418)
T ss_pred CCceecCeEEEEeCCCeEEEecCCCC----CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHH
Confidence 3443 47899 999999999998542 356999999999999999999988521 11
Q ss_pred ----CchhhhH----HHHHHHHhCCcEEEeccccCCCC-----------ChHHHHHHHHHHhcccccccceeee-----e
Q 009410 122 ----ETIDDFF----SGQAAALAGGTTMHIDFVIPING-----------SLTAGFEAYEKKAKNSCMDYGFHMA-----I 177 (535)
Q Consensus 122 ----~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 177 (535)
.++++++ ....+++++||||++|+...... .....++...+.+.+..+...++.. .
T Consensus 80 ~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~ 159 (418)
T cd01313 80 FAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGP 159 (418)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCC
Confidence 0112221 22334588999999997532110 1133445555555443332111110 0
Q ss_pred ecC---------ChhhHHHHHHHHH-HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHH
Q 009410 178 TKW---------DEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQK 246 (535)
Q Consensus 178 ~~~---------~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~ 246 (535)
... ..+..+.+.++.+ ......+...+.+++...++++.++++.+.|++ |+++++|+.+ ........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~- 237 (418)
T cd01313 160 APNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCL- 237 (418)
T ss_pred CCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHH-
Confidence 000 0112222222211 112234555566666677899999999999999 9999999943 32222111
Q ss_pred HHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccc
Q 009410 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (535)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (535)
...|... ++.+.+ ....+.++.+.|+...+. ++++++++.|+.++.||...
T Consensus 238 --~~~g~~~----------------i~~l~~-~g~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~~P~sn--------- 288 (418)
T cd01313 238 --AAHGRRP----------------VELLLD-HGHLDARWCLVHATHLTD-NETLLLGRSGAVVGLCPTTE--------- 288 (418)
T ss_pred --HHcCCCH----------------HHHHHH-cCCCCCCEEEEeCCCCCH-HHHHHHHHcCCEEEECCCch---------
Confidence 1223211 111212 234567889999999887 88999999999999998752
Q ss_pred cCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh---
Q 009410 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--- 403 (535)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--- 403 (535)
+..+... .++++++++|+++++|||..... + +|. +++.....++...
T Consensus 289 ----~~lg~g~------------~p~~~l~~~Gv~v~lGtD~~~~~-d-------~~~------~~~~~~~~~~~~~~~~ 338 (418)
T cd01313 289 ----ANLGDGI------------FPAAALLAAGGRIGIGSDSNARI-D-------LLE------ELRQLEYSQRLRDRAR 338 (418)
T ss_pred ----hhccCCC------------CCHHHHHHCCCcEEEecCCCCCc-C-------HHH------HHHHHHHHHHHHhccc
Confidence 2222211 22889999999999999954321 1 121 2233222322221
Q ss_pred -----cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEE
Q 009410 404 -----SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 478 (535)
Q Consensus 404 -----~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v 478 (535)
..++++.++|+++|.|+|+++|++ .|+|++||+||||++|.+.++..+.. ..++.....|.+. ..+|+.|
T Consensus 339 ~~~~~~~~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~~~~~p~~-~~~~~~~lv~~~~--~~~V~~v 413 (418)
T cd01313 339 NVLATAGGSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDHPSLAGAL-PDTLLDAWVFAAG--DREVRDV 413 (418)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCCccccCCC-chhHHHHHeecCC--CCceeEE
Confidence 236999999999999999999994 89999999999999998877655421 0112223344433 3589999
Q ss_pred EECCE
Q 009410 479 IAGGR 483 (535)
Q Consensus 479 ~~~Gr 483 (535)
||+|+
T Consensus 414 ~V~G~ 418 (418)
T cd01313 414 VVGGR 418 (418)
T ss_pred EeCCC
Confidence 99996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-31 Score=266.55 Aligned_cols=355 Identities=18% Similarity=0.208 Sum_probs=210.3
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCC---CCceEEecCCCEEeecccccccccccccCC-CCchhhhHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFS 129 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~---~~~~vID~~G~~vlPGlID~H~H~~~~~~g-~~~~~~~~~ 129 (535)
.++|+|++|++++...+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+...... .........
T Consensus 2 ~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~ 81 (388)
T PRK10657 2 FTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEV 81 (388)
T ss_pred eEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHH
Confidence 4789999999987666789999999999998754321 346899999999999999999998742100 011123345
Q ss_pred HHHHHHhCCcEEEeccccCCCC-ChHHHHHHHH----HHhcccccccceee-eeecCChhhHHHHHHHHHHcCCCEEEEE
Q 009410 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYE----KKAKNSCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSFKFF 203 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ik~~ 203 (535)
...+++++||||++|+.+.... .....+.... ..+-+.+...+++. ......+...+++....+..|.. ++.
T Consensus 82 ~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--~~~ 159 (388)
T PRK10657 82 QLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSYHVPVRTITGSIRKDIVLIDKVIGVG--EIA 159 (388)
T ss_pred HHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhhceehhhhhhCcc--eee
Confidence 6788899999999998743221 1122222222 22222221111111 00001111111111110011211 343
Q ss_pred eecCCCCcCCHHHHHHHHHHHHhcCC------eEEEEcCC-hhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHH
Q 009410 204 MAYKGSFMINDELLIEGFKRCKSLGA------LAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (535)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 276 (535)
...+.....+.+.+.++.+.++..+. ++++|+.. ........+.+.+.|+..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~--------------------- 218 (388)
T PRK10657 160 ISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPI--------------------- 218 (388)
T ss_pred eccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCc---------------------
Confidence 34444455688999988888876554 79999863 322222112223344321
Q ss_pred HHHHhcCCCEEEEEccCHH-HHHHHHHHHHcCCcEEec-cccceEeeCcccccCcCccccceeEEcCCCCCc---ccHHH
Q 009410 277 RLAEFVNTPLYVVHVMSMD-AMEEIAKARKAGQRVIGE-PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS---GHNKA 351 (535)
Q Consensus 277 ~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~---~~~~~ 351 (535)
..+...|+.... ..+....+.+.|..+... ..+ +.+.. .....
T Consensus 219 -------~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~-------------------------~~~~~~~~~~~~~ 266 (388)
T PRK10657 219 -------SQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDP-------------------------DFLGEGEVAPAEA 266 (388)
T ss_pred -------ceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCC-------------------------cccccCccCHHHH
Confidence 124456655411 112333344466555322 221 11111 12366
Q ss_pred HHHHHhcCC---eEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 352 LQAALATGI---LQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 352 ~~~~l~~Gv---~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
+++++++|+ +++++||+.......... +-+ .+. +... +...+..++...++|++++++++|.|||+++|
T Consensus 267 l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~--g~~--~~~g~~~~~~-l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg 341 (388)
T PRK10657 267 LKRALEAGVPLSRVTLSSDGNGSLPKFDED--GNL--VGLGVGSVES-LLEEVRELVKDEGLPLEDALKPLTSNVARFLK 341 (388)
T ss_pred HHHHHHcCCChhheEEECCCCCCCceeccC--CCE--eccCcCchhh-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 899999998 789999974332110000 000 111 2222 23333355556679999999999999999999
Q ss_pred CCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 426 VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 426 l~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
+++ +|+|++|+.|||+++| ++ ..|..||++|++|+++|+++.+
T Consensus 342 ~~~-~G~l~~G~~AD~vv~~-~~------------------------~~~~~~~~~G~~v~~~~~~~~~ 384 (388)
T PRK10657 342 LNG-KGEILPGKDADLLVLD-DD------------------------LRIEQVIAKGKLMVKDGKALVK 384 (388)
T ss_pred CCC-CCccCCCCccCEEEEC-CC------------------------CCEEEEEECCEEEEECCEEecc
Confidence 965 8999999999999998 32 2689999999999999998763
|
|
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=270.88 Aligned_cols=374 Identities=22% Similarity=0.305 Sum_probs=249.2
Q ss_pred cEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C---------
Q 009410 54 KILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g--------- 120 (535)
.++++|..++..++. +.+++.|+||+|+.|++....+.+.++||++|++|+|||||+|+|+.+... +
T Consensus 3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~ 82 (421)
T COG0402 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLE 82 (421)
T ss_pred ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCCCCceeecCCCCEeccCccccccchHHHHHhhhhcccchHH
Confidence 467888888875443 469999999999999997654456899999999999999999999887621 0
Q ss_pred ------------CCchhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceee-----eeec
Q 009410 121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITK 179 (535)
Q Consensus 121 ------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 179 (535)
..++++.+. ....++++|+|+++.............++...+.+.+......+.. ....
T Consensus 83 wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~ 162 (421)
T COG0402 83 WLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAE 162 (421)
T ss_pred HHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCCCCccccc
Confidence 112223222 3345689999997654333222345566666666655433322222 1111
Q ss_pred CChhhHHHHHHHH-HHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEc-CChhhHHHHHHHHHHcCCCCcc
Q 009410 180 WDEVVSDEMEVMV-KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPE 257 (535)
Q Consensus 180 ~~~~~~~~~~~~~-~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~~~~~g~~~~~ 257 (535)
..++ .++..+.. +..+...+.+...++....++++.++.+.+.++++|+++++|+ ++...+....+ ..|...
T Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~---~~g~~~-- 236 (421)
T COG0402 163 TDEE-LEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE---PYGARP-- 236 (421)
T ss_pred chHH-HHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh---hcCCCH--
Confidence 1111 12222222 2345556667777888889999999999999999999999999 55554444433 122211
Q ss_pred cccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
+. .+......+.++.+.|+.+... ++++.+++.|+.+++||.+ |+.++++.
T Consensus 237 --------------~~-~~~~~g~l~~~~~~~H~~~~~~-~e~~~l~~~g~~v~~cP~s-------------N~~L~sG~ 287 (421)
T COG0402 237 --------------VE-RLDLLGLLGSHTLLAHCVHLSE-EELELLAESGASVVHCPRS-------------NLKLGSGI 287 (421)
T ss_pred --------------HH-HHHHcCCCCCCeEEEEeccCCH-HHHHHHhhCCCeEEECcch-------------hccccCCC
Confidence 11 1122333456788999998887 7888888999999999986 44444442
Q ss_pred EEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHH--HHHHH
Q 009410 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVT--DYVRL 415 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~--eal~~ 415 (535)
.+++++++.|+++++|||+..++.... +|. ++....++++.......+.. ++|++
T Consensus 288 ------------~p~~~~~~~gv~v~~gTD~~~~~~~~d-----~l~------~~~~a~~l~~~~~~~~~~~~~~~~l~~ 344 (421)
T COG0402 288 ------------APVRRLLERGVNVALGTDGAASNNVLD-----MLR------EMRTADLLQKLAGGLLAAQLPGEALDM 344 (421)
T ss_pred ------------CCHHHHHHcCCCEEEecCCccccChHH-----HHH------HHHHHHHHHHhhcCCCcccchHHHHHH
Confidence 228899999999999999877665332 233 44555555444331111111 38999
Q ss_pred HhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 416 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 416 ~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
+|.|+|++||+ ++.|+|++||.|||||+|.+.+...... +.+ ...+... ...|..||++|+.++.+++..
T Consensus 345 aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~-~~~---~~v~~~~--~~~v~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 345 ATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLR-PVS---RLVFAAG--GKDVDRVLVDGRLVMEDGRLL 414 (421)
T ss_pred HHhhHHHHcCC-cccCCcccccccCEEEEcCCCCcccccc-HHH---HHHHhcC--CCceeEEEECCEEEEEcceeh
Confidence 99999999998 7899999999999999999876443322 111 1112211 238999999999999999887
|
|
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=274.08 Aligned_cols=360 Identities=18% Similarity=0.219 Sum_probs=211.5
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC----------
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------- 121 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~---------- 121 (535)
++++|+|++|+++. ...+|+|+||+|++|++..+. .+.++||++|++|+|||||+|+|+...+. +.
T Consensus 2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~ 78 (426)
T PRK07572 2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA-EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLL 78 (426)
T ss_pred CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC-CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHH
Confidence 35789999999865 367899999999999986432 34689999999999999999999976421 11
Q ss_pred ------------CchhhhH----HHHHHHHhCCcEEEeccccCCCC---ChHHHHHHHHHHhcccccccc-eeeeeecCC
Q 009410 122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYG-FHMAITKWD 181 (535)
Q Consensus 122 ------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 181 (535)
.+++++. ..+..++++|||+++|+...... ......+.....++....... +........
T Consensus 79 e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~g~~~~ 158 (426)
T PRK07572 79 EGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGVLRS 158 (426)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEEeccChhhccC
Confidence 1233332 34456789999999997432111 122222211111111111010 000001111
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEc-CChhhHHHHHHHHHHcCCCCccccc
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHA 260 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (535)
.+..+.+++.. +.|++.+............+.+.++.+++.|+++|+++.+|+ +.........+.+
T Consensus 159 ~~~~~~~~~~l-~~g~d~iGg~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~------------ 225 (426)
T PRK07572 159 PGAVDNLERAL-DMGVDVVGGIPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETL------------ 225 (426)
T ss_pred ccHHHHHHHHH-HcCCCEEeCCCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHH------------
Confidence 22345566666 467777642211111111224899999999999999999999 4443332222111
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHH------HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccc
Q 009410 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (535)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~------~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (535)
..+..+. ...+ ++.+.|+.... ..+.++.+++.|+.+++||............
T Consensus 226 -----------~~~~~~~-G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~~~~~-------- 284 (426)
T PRK07572 226 -----------AAETQRL-GLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQGRHDT-------- 284 (426)
T ss_pred -----------HHHHHHh-CCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcCCCCC--------
Confidence 0111111 1112 57789996532 2367899999999999998653211111000
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCC----HH
Q 009410 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQIS----VT 410 (535)
Q Consensus 335 ~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls----~~ 410 (535)
.|. ......+++++++|+++++|||+...... ++.. ..-++. +... ....+++ +.
T Consensus 285 -----~~~---~~g~~~v~~l~~~GV~v~lGtD~~~~~~~-------~~~~-~~~~e~-~~~~----~~~~~~~~~~~l~ 343 (426)
T PRK07572 285 -----YPK---RRGMTRVPELMAAGINVAFGHDCVMDPWY-------SLGS-GDMLEV-AHMG----LHVAQMTGQDAMR 343 (426)
T ss_pred -----CCC---CCCCcCHHHHHHCCCcEEEecCCCCCCCC-------CCCC-CCHHHH-HHHH----HHHHcCCCHHHHH
Confidence 000 01123489999999999999996421100 0000 000111 1111 1122344 34
Q ss_pred HHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcC-CCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECC
Q 009410 411 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP-NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 489 (535)
Q Consensus 411 eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~-~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~ 489 (535)
++|+++|.|||++||+++ .| |++||.||||++|. ++...+ ....++..||++|++|++..
T Consensus 344 ~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~~p~e~i-----------------~~~~~~~~V~~~G~~v~~~~ 404 (426)
T PRK07572 344 ACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQARDPIEAI-----------------RLRAARLAVIRRGKVIARTP 404 (426)
T ss_pred HHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCCCHHHHH-----------------HhcCCceEEEECCEEEeccC
Confidence 666799999999999965 67 99999999999994 543322 22357899999999998873
|
|
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=266.90 Aligned_cols=315 Identities=20% Similarity=0.183 Sum_probs=202.5
Q ss_pred cEEEEc-cEEEcCCC---------ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C--
Q 009410 54 KILIKG-GTVVNAHH---------QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-- 120 (535)
Q Consensus 54 ~~vi~n-~~vi~~~~---------~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g-- 120 (535)
+++|+| +.|++++. .++++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..... +
T Consensus 2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~ 81 (382)
T PRK14085 2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLVFAGDRSAE 81 (382)
T ss_pred cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCCCCCeEEeCCCCEEecCeEecCcCccccCChhHH
Confidence 578999 59998752 2578999999999999986544556789999999999999999999965310 0
Q ss_pred -----------------------CCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHh--ccccccc
Q 009410 121 -----------------------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA--KNSCMDY 171 (535)
Q Consensus 121 -----------------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 171 (535)
..+.++.+ ..+..++++|+||++|+..... .....++.....+ .......
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T PRK14085 82 FAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGL-TVEDEARSARIAAEFTDEVTFL 160 (382)
T ss_pred HHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCC-CHHHHHHHHHHHHHhhhcceee
Confidence 01222222 2345678999999999753321 2223333222111 0000001
Q ss_pred ceeeeeec--CC-hhhHHH----HHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHH
Q 009410 172 GFHMAITK--WD-EVVSDE----MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (535)
Q Consensus 172 ~~~~~~~~--~~-~~~~~~----~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 244 (535)
+.+..... .+ .+.... +.... ....+.+|++.+. ...+.+.++++++.|++.|+++.+|+.+... ...
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~ 235 (382)
T PRK14085 161 GAHVVPPEYAGDADEYVDLVCGPMLDAV-APHARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGP-GPG 235 (382)
T ss_pred ccccCCcccCCCHHHHHHHHHHHHHHHH-HHhCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCcccC-ChH
Confidence 10110011 11 111111 22333 3457788887653 2457899999999999999999999864211 011
Q ss_pred HHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcc
Q 009410 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (535)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 324 (535)
++.+.+.|. . .+.|+...+. ++++++++.|+.++.+|..+
T Consensus 236 v~~~~~~g~-------------------------------~-~i~H~~~l~~-~~~~~la~~gv~~~~~P~~~------- 275 (382)
T PRK14085 236 VRLAVELGA-------------------------------A-SVDHCTYLTD-ADVDALAGSGTVATLLPGAE------- 275 (382)
T ss_pred HHHHHHcCC-------------------------------C-cHHHhCCCCH-HHHHHHHHcCCEEEECcHHH-------
Confidence 222222222 1 3567777776 88999999998887776531
Q ss_pred cccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhc
Q 009410 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVES 404 (535)
Q Consensus 325 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 404 (535)
+..+.. ..++++++++|+++++|||+.+..... ..+...+...+..
T Consensus 276 ------~~~~~~------------~~~~~~l~~aGv~v~lgsD~~~~~~~~----------------~~~~~~~~~~~~~ 321 (382)
T PRK14085 276 ------FSTRQP------------YPDARRLLDAGVTVALASDCNPGSSYT----------------SSMPFCVALAVRQ 321 (382)
T ss_pred ------HhcCCC------------CchHHHHHHCCCcEEEEeCCCCCCChH----------------HHHHHHHHHHHHh
Confidence 111111 134899999999999999975432211 1122222223445
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCc
Q 009410 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 449 (535)
Q Consensus 405 ~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~ 449 (535)
.+++++++|+++|.|||+++|++ +.|+|++||.|||||+|.+..
T Consensus 322 ~~l~~~~al~~aT~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~ 365 (382)
T PRK14085 322 MGMTPAEAVWAATAGGARALRRD-DVGVLAVGARADLHVLDAPSH 365 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCC-CCCCcCCCCCCCEEEEcCCCC
Confidence 67999999999999999999996 589999999999999998653
|
|
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=268.40 Aligned_cols=349 Identities=16% Similarity=0.135 Sum_probs=210.1
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCc---------
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET--------- 123 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~--------- 123 (535)
.+++|+|++|+++. ..+|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.....+...
T Consensus 2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~ 78 (391)
T PRK05985 2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSL 78 (391)
T ss_pred CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCH
Confidence 45899999999975 569999999999999875444467899999999999999999999654111100
Q ss_pred --------------hhhh----HHHHHHHHhCCcEEEeccccCCCC----ChHHHHHHHHHHhcccccccceeeeee-cC
Q 009410 124 --------------IDDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHMAIT-KW 180 (535)
Q Consensus 124 --------------~~~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 180 (535)
..++ ......++++|+|+++|+...... .....++...........++..+.... ..
T Consensus 79 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 158 (391)
T PRK05985 79 RERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLS 158 (391)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccC
Confidence 0011 123456789999999988543221 222222222221111111111111101 11
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccc
Q 009410 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (535)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (535)
.....+.+++.. +.|.+.+.. ..+......+++.+.++++.|+++|+++.+|+.......
T Consensus 159 ~~~~~~ll~~~l-~~g~~~~gg-~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~------------------ 218 (391)
T PRK05985 159 RPGTAELLDAAL-RAGADVVGG-LDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELG------------------ 218 (391)
T ss_pred CcCHHHHHHHHH-HcCCCEEeC-CCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCcc------------------
Confidence 111234455555 556654322 233334556789999999999999999999984432110
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCC--CEEEEEccCHH------HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcc
Q 009410 261 LSRPPLLEGEATTRAIRLAEFVNT--PLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (535)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~H~~~~~------~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (535)
...+.+.++.....+. ++.+.|+.... ..+.++++++.|+.++.++..
T Consensus 219 --------~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~---------------- 274 (391)
T PRK05985 219 --------AFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTNAPG---------------- 274 (391)
T ss_pred --------HHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCC----------------
Confidence 0112222333333342 47788886431 125688899999988765321
Q ss_pred ccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHH-HHHHHHHHHHhcCCCCHHH
Q 009410 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEE-RMHLVWDTMVESGQISVTD 411 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~~ls~~e 411 (535)
+..+ .++++++++|+++++|||+...+.. ||... ..++. .+...... . ...-++.+
T Consensus 275 -~~~~------------~~~~~l~~~Gv~v~lGtD~~~~~~~-------p~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~ 331 (391)
T PRK05985 275 -SVPV------------PPVAALRAAGVTVFGGNDGIRDTWW-------PYGNG-DMLERAMLIGYRSG-F-RTDDELAA 331 (391)
T ss_pred -CCCC------------CCHHHHHHCCCeEEEecCCCCCCCc-------CCCCC-cHHHHHHHHHHHHc-c-CChHHHHH
Confidence 0111 2389999999999999996432111 11110 00111 11111110 0 11124579
Q ss_pred HHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECC
Q 009410 412 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 489 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~ 489 (535)
+|+++|.|||+++|+++ ++|++||.||||++|.+++.... .. ...+..||++|++||++|
T Consensus 332 al~~~T~~~A~~lg~~~--~~l~~G~~ADlvvld~~~~~~~~------------~~----~~~~~~v~~~G~~v~~~~ 391 (391)
T PRK05985 332 ALDCVTHGGARALGLED--YGLAVGARADFVLVDAETVAEAV------------VA----VPVRRLVVRGGRIVARDG 391 (391)
T ss_pred HHHHHcchhHHHhCCcc--cCCCCCCcCCEEEECCCCHHHHH------------hh----CCcceEEEECCEEEecCC
Confidence 99999999999999954 45999999999999987653221 11 124677999999999986
|
|
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=267.50 Aligned_cols=360 Identities=19% Similarity=0.214 Sum_probs=214.0
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCC-CCceEEecCCCEEeecccccccccccccC-CC---------
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------- 121 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~-~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~--------- 121 (535)
..++|+|++|+++.. ..+|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+...+. +.
T Consensus 4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l 81 (426)
T PRK09230 4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTL 81 (426)
T ss_pred ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCCCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCH
Confidence 568999999988543 469999999999999864322 35789999999999999999999986521 11
Q ss_pred -------------CchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHH----HHHhcccccccceeeeee-c
Q 009410 122 -------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAY----EKKAKNSCMDYGFHMAIT-K 179 (535)
Q Consensus 122 -------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~ 179 (535)
.++++++ ..+..++++|||+++++..+... ....++.. .+.....-+.+....... .
T Consensus 82 ~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~-~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~ 160 (426)
T PRK09230 82 FEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDP-TLTALKAMLEVKEEVAPWVDLQIVAFPQEGIL 160 (426)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCc-chhHHHHHHHHHHHhhCcceEEEEeccCcccc
Confidence 1112221 23445688999999988654322 11222222 111111111111111000 0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEEeecCCCCc--CCHHHHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHHHcCCCCc
Q 009410 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAENGDAV-FEGQKRMIELGITGP 256 (535)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~-~~~~~~~~~~g~~~~ 256 (535)
...+..+.++... +.+.+.+.. .++.... .+.+.+..+++.|+++|+++.+|+...... ....
T Consensus 161 ~~~~~~~~l~~a~-~~~~~~vg~--~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~----------- 226 (426)
T PRK09230 161 SYPNGEALLEEAL-RLGADVVGA--IPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFV----------- 226 (426)
T ss_pred CCccHHHHHHHHH-HcCCCEEeC--CCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHH-----------
Confidence 0112223344433 344443322 1222222 257899999999999999999999543211 1001
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHH------HHHHHHHHHHcCCcEEeccccceEeeCcccccCcC
Q 009410 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~------~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (535)
....+.++... .+.++.+.|+.... ..++++++++.|+.|+.||..+..+...
T Consensus 227 -------------~~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn~~l~~~------- 285 (426)
T PRK09230 227 -------------ETVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGR------- 285 (426)
T ss_pred -------------HHHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCC-------
Confidence 11111122122 35678999998872 3378999999999999999864322110
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc-hHHHHHHHHHHHHHhcCCC-C
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN-GIEERMHLVWDTMVESGQI-S 408 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~~~l-s 408 (535)
....|. + ....++++++++|+++++|||+... +|..... .+...+.... ........ +
T Consensus 286 ------~~~~p~-~--~g~~pi~~l~~aGv~V~lGTD~~~d----------~~~~~~~~d~~~~~~~~~-~~~~~~~~~~ 345 (426)
T PRK09230 286 ------FDTYPK-R--RGITRVKEMLEAGINVCFGHDDVFD----------PWYPLGTANMLQVLHMGL-HVCQLMGYGQ 345 (426)
T ss_pred ------CCCCCC-C--CCCcCHHHHHHCCCeEEEecCCCCC----------CCcCCCCCCHHHHHHHHH-HHHhhCChhh
Confidence 000000 0 0113489999999999999996432 2211111 1111111111 00111112 3
Q ss_pred HHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 409 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 409 ~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+.++|+++|.|||+++|+++ .| |++||.||||+++.+.+..+- +. ...++.||++|++|+..
T Consensus 346 ~~~~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~------------~~----~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 346 INDGLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAENGFDAV------------RR----QVPVRYSIRHGKVIAET 407 (426)
T ss_pred HHHHHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHH------------hc----cCCceEEEECCEEEecc
Confidence 68999999999999999965 78 999999999999975443321 00 24789999999999866
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=270.66 Aligned_cols=328 Identities=17% Similarity=0.169 Sum_probs=228.2
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
..+++|+|++|+++.. ...++|+|+||+|++|++......+.++||++|++|+|||||+|+|+..+ . .+++++
T Consensus 29 ~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~~~~~vIDa~G~~v~PGlIDaHvHiess--~-~~p~~~-- 103 (588)
T PRK10027 29 VADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESS--M-MTPVTF-- 103 (588)
T ss_pred CCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCCCCCeEEECCCCEEEECeEeccccCCcc--c-CCHhHH--
Confidence 5779999999998643 35679999999999997653322346899999999999999999999876 2 366666
Q ss_pred HHHHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhcccccccceeee----eec-CC----hhhHHHHHHHHHHcCCCE
Q 009410 130 GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHMA----ITK-WD----EVVSDEMEVMVKEKGINS 199 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~----~~~~~~~~~~~~~~g~~~ 199 (535)
...++.+|+||++++..... ....+.++...+......+..++..+ .+. .+ .-..++++++.+..++-+
T Consensus 104 -a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~g 182 (588)
T PRK10027 104 -ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTG 182 (588)
T ss_pred -HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCcee
Confidence 44689999999998643322 24556666666665554444333221 111 11 114567777776778888
Q ss_pred EEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
+...++|++....+++.+.++... .++.+..|++... ...+..+...|+.+
T Consensus 183 lgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p~l~--g~~L~ay~aaGi~s------------------------ 233 (588)
T PRK10027 183 LAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCPGLG--GKELNAYIAAGIEN------------------------ 233 (588)
T ss_pred EEeccCccccccCCHHHHHHHHHh---CCCceECCCCCCC--hHHHHHHHHcCCCC------------------------
Confidence 888899998887788888888844 7999999998665 34556666666643
Q ss_pred HhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhc-
Q 009410 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT- 358 (535)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~- 358 (535)
.|.....+ +.+++++ .|+.+...- ++..+ +...+..++..
T Consensus 234 ---------DHE~~t~e-ea~eklr-~Gm~v~iRe-------------------gS~~~---------nl~~l~~~~~~~ 274 (588)
T PRK10027 234 ---------CHESYQLE-EGRRKLQ-LGMSLMIRE-------------------GSAAR---------NLNALAPLINEF 274 (588)
T ss_pred ---------CcccCCHH-HHHHHHH-CCCEEEEeC-------------------Ccccc---------CHHHHHHHhhcc
Confidence 34444333 5555554 677765421 11111 11222222222
Q ss_pred -CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCC
Q 009410 359 -GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 437 (535)
Q Consensus 359 -Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk 437 (535)
--.++++||......... +.++...++.+++..|+++++|++++|.|||+++|++ ++|+|++|+
T Consensus 275 ~~~~~~l~TDd~~~~~l~~--------------~Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~-d~G~IapG~ 339 (588)
T PRK10027 275 NSPQCMLCTDDRNPWEIAH--------------EGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLN-HLGLLAPGK 339 (588)
T ss_pred CCCeEEEEcCCCChHHHHh--------------ccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC-CCcccCCCC
Confidence 146899999754221111 2356777878888778999999999999999999995 589999999
Q ss_pred CccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 438 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 438 ~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
.|||+++|.... .++..||++|++|+++ +.+
T Consensus 340 ~ADlvvld~l~~-----------------------~~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 340 QADIVLLSDARK-----------------------VTVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred cCCEEEEccCCC-----------------------ceEEEEEECCEEeecc-ccc
Confidence 999999984211 2688999999999998 655
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=270.67 Aligned_cols=324 Identities=19% Similarity=0.240 Sum_probs=220.3
Q ss_pred cEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 54 ~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
+++|+|++|+++.+ ...++|+|+||+|++|++.. +.++||++|++|+|||||+|+|+..+ + ..++.+ .
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~----~~~viDa~G~~v~PG~ID~H~Hi~~~--~-~~~~~~---~ 70 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN----GVKVIDALGEYAVPGFIDAHIHIESS--M-LTPSEF---A 70 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC----CCeEEECCCCEEEeCeEecccccCCC--C-CChhHH---H
Confidence 47899999998654 35689999999999998742 46899999999999999999999876 2 234444 4
Q ss_pred HHHHhCCcEEEeccccCC-CCChHHHHHHHHHHhcccccccceeeee--e----cCChh--hHHHHHHHHHHcCCCEEEE
Q 009410 132 AAALAGGTTMHIDFVIPI-NGSLTAGFEAYEKKAKNSCMDYGFHMAI--T----KWDEV--VSDEMEVMVKEKGINSFKF 202 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~--~~~~~~~~~~~~g~~~ik~ 202 (535)
..++.+||||++++.... +....+.++.+.+.....++++.+..+. + ..++. ..+++.++.++.++.++|.
T Consensus 71 ~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke 150 (552)
T TIGR01178 71 KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAE 150 (552)
T ss_pred HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEE
Confidence 667999999999874432 2245677777766655556665333321 1 11112 3567778776679999999
Q ss_pred EeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc
Q 009410 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (535)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (535)
+++|++....+.+.++. ++.+++.|..+.+|++... .+.+..+.+.|..
T Consensus 151 ~m~~~~v~~~d~~~l~~-i~~a~~~g~~I~gHap~l~--~~eL~~~~~aGi~---------------------------- 199 (552)
T TIGR01178 151 VMDYPGVINADIEMLNK-INSARKRNKVIDGHCPGLS--GKLLNKYISAGIS---------------------------- 199 (552)
T ss_pred EecchhhcCCCHHHHHH-HHHHHhCCCEEEecCCCCC--HHHHHHHHHcCCC----------------------------
Confidence 99987644444555554 4889999999999997543 3344444444432
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHH--hcCC
Q 009410 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAAL--ATGI 360 (535)
Q Consensus 283 ~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l--~~Gv 360 (535)
..|+.... ++...-.+.|+.+...-. +.. .+...+..++ ..+.
T Consensus 200 -----~dHe~~s~--~ea~e~~~~Gm~~~ir~g-------------------s~~---------~n~~~~~~~~~~~~~~ 244 (552)
T TIGR01178 200 -----NDHESTSI--EEAREKLRLGMKLMIREG-------------------SAA---------KNLEALHPLINEKNCR 244 (552)
T ss_pred -----CCcCcCCH--HHHHHHHHCCCEEEEeCC-------------------ccc---------cCHHHHHHHHhhcCCc
Confidence 45665544 333334557876653211 110 0112222222 3568
Q ss_pred eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCcc
Q 009410 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDAD 440 (535)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~AD 440 (535)
+++++||... ..+ .+. +.++...++.+++. |+++++|++++|.|||+++|++ +.|+|++|+.||
T Consensus 245 ~~~l~TD~~~-~~~-------~~~------~g~l~~~v~~ai~~-g~~~~~Al~maT~npA~~lgl~-~~G~I~pG~~AD 308 (552)
T TIGR01178 245 SLMLCTDDRH-VND-------ILN------EGHINHIVRRAIEH-GVDPFDALQMASINPAEHFGID-VGGLIAPGDPAD 308 (552)
T ss_pred eEEEEeCCCC-hhH-------HHh------cCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCC-CCcccCCCCcCC
Confidence 9999999421 111 111 12455556566554 6999999999999999999995 589999999999
Q ss_pred EEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC-----Ceec
Q 009410 441 IIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-----DELN 492 (535)
Q Consensus 441 lvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~-----~~~~ 492 (535)
||+++... ..++..||++|++|.++ |+.+
T Consensus 309 lvvl~~l~-----------------------~~~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 309 FVILKDLR-----------------------NFKVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred EEEECCCC-----------------------CceEEEEEECCEEEcccccccCCccc
Confidence 99998311 13789999999999997 7754
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=266.50 Aligned_cols=301 Identities=18% Similarity=0.164 Sum_probs=190.6
Q ss_pred ceEEecCCCEEeecccccccccccccCCCCc----hhhh-----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHH
Q 009410 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSET----IDDF-----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK 163 (535)
Q Consensus 93 ~~vID~~G~~vlPGlID~H~H~~~~~~g~~~----~~~~-----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~ 163 (535)
+++||++|++|+|||||+|+|+......... ...+ ....+.++++||||++|++........+.++.....
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~ 80 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGLLRDAIDAGLIP 80 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCcc
Confidence 4689999999999999999998664111110 1111 245778899999999999754332223333333333
Q ss_pred hcccccccce---------------------eeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCC--------CCcCCH
Q 009410 164 AKNSCMDYGF---------------------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG--------SFMIND 214 (535)
Q Consensus 164 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~--------~~~~~~ 214 (535)
+++.+..... +.......++....++++. +.|++.+|+|.++.. ...++.
T Consensus 81 gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~iK~~~~g~~~~~~~~~~~~~~~~ 159 (342)
T cd01299 81 GPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQL-RRGADQIKIMATGGVLSPGDPPPDTQFSE 159 (342)
T ss_pred CCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHH-HhCCCEEEEeccCCcCCCCCCCcccCcCH
Confidence 3332111100 1111223455677788877 679999999986531 135789
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCH
Q 009410 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (535)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 294 (535)
+.++++++.|++.|+++.+|+.+...+...+ +. +.. .+.|+...
T Consensus 160 e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l----~~-------------------------------G~~-~i~H~~~~ 203 (342)
T cd01299 160 EELRAIVDEAHKAGLYVAAHAYGAEAIRRAI----RA-------------------------------GVD-TIEHGFLI 203 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----Hc-------------------------------CCC-EEeecCCC
Confidence 9999999999999999999998754332222 11 222 47898877
Q ss_pred HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChh
Q 009410 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374 (535)
Q Consensus 295 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~ 374 (535)
+. +.++++++.|+.+++|+.....+...... ..+......+.. .........++.++++|+++++|||.......
T Consensus 204 ~~-~~~~~l~~~g~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~GTD~~~~~~~ 278 (342)
T cd01299 204 DD-ETIELMKEKGIFLVPTLATYEALAAEGAA--PGLPADSAEKVA--LVLEAGRDALRRAHKAGVKIAFGTDAGFPVPP 278 (342)
T ss_pred CH-HHHHHHHHCCcEEeCcHHHHHHHHhhccc--cCCCHHHHHHHH--HHHHHHHHHHHHHHHcCCeEEEecCCCCCCCc
Confidence 76 88999999999888777643221100000 000000000000 00011235688899999999999996431110
Q ss_pred hhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceee
Q 009410 375 QKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI 452 (535)
Q Consensus 375 ~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i 452 (535)
. . ++...+. .+. ..++++.++|+++|.|||+++|+++++|+|++||.|||||+|.|++.++
T Consensus 279 ~--------~----~~~~e~~----~~~-~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~pl~di 339 (342)
T cd01299 279 H--------G----WNARELE----LLV-KAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGDPLEDI 339 (342)
T ss_pred h--------h----HHHHHHH----HHH-HhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCChhhhh
Confidence 0 0 1111222 222 3469999999999999999999988899999999999999998876544
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=263.76 Aligned_cols=323 Identities=17% Similarity=0.166 Sum_probs=196.4
Q ss_pred eeeeEEEeCCEEEEeeCCCCCCC--CceEEecCCCEEeecccccccccccccC----------CC---------------
Q 009410 69 QIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS--------------- 121 (535)
Q Consensus 69 ~~~~I~I~~G~I~~Vg~~~~~~~--~~~vID~~G~~vlPGlID~H~H~~~~~~----------g~--------------- 121 (535)
++++|+|+||+|++|++....+. +.++||++|++|+|||||+|+|+..... +.
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILST 81 (377)
T ss_pred CceEEEEECCEEEEEechhhCCcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHHH
Confidence 47899999999999998533232 5789999999999999999999975311 00
Q ss_pred ------CchhhhHH----HHHHHHhCCcEEEeccccCCC--CChHHHHHHHHHHhcccccccce--ee--eeec----CC
Q 009410 122 ------ETIDDFFS----GQAAALAGGTTMHIDFVIPIN--GSLTAGFEAYEKKAKNSCMDYGF--HM--AITK----WD 181 (535)
Q Consensus 122 ------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~----~~ 181 (535)
.++++++. ....++++|||++-+...... ......++...+...+..+.... .. ..+. ..
T Consensus 82 ~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (377)
T TIGR01224 82 VRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRP 161 (377)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCH
Confidence 01111111 234568899999833211111 11122333333333222111111 00 0010 00
Q ss_pred hhhHH-----HHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009410 182 EVVSD-----EMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (535)
Q Consensus 182 ~~~~~-----~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (535)
.+..+ .+++.....++.+++++.. ....+.+.+.++++.|+++|+++.+|+....... ..+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-~~~~~~------- 230 (377)
T TIGR01224 162 DDYVDGICEELIPQVAEEGLASFADVFCE---AGVFSVEQSRRILQAAQEAGLPVKLHAEELSNLG-GAELAA------- 230 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeEEEec---CCCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-HHHHHH-------
Confidence 11111 1122221123666655432 2244678999999999999999999995432100 011111
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccce
Q 009410 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (535)
..+ ...+.|+...++ ++++++++.|+.++.||..... .+..
T Consensus 231 ------------------------~~g-~~~~~H~~~~~~-~~l~~la~~g~~~~~~P~~~~~-------------l~~~ 271 (377)
T TIGR01224 231 ------------------------KLG-AVSADHLEHASD-AGIKALAEAGTVAVLLPGTTFY-------------LRET 271 (377)
T ss_pred ------------------------HcC-CCccHHHhcCCH-HHHHHHHhcCCEEEECchHHHh-------------cCCc
Confidence 112 123557776665 8899999999999988875211 1111
Q ss_pred eEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC-CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009410 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCA-FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415 (535)
Q Consensus 337 ~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~-~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~ 415 (535)
. .++++++++|+++++|||+.+ .+.. . .+...+.......++++++++++
T Consensus 272 ---~---------~p~~~l~~~Gv~v~lgTD~~~~~~~~---------~--------~~~~~~~~~~~~~~ls~~eal~~ 322 (377)
T TIGR01224 272 ---Y---------PPARQLIDYGVPVALATDLNPGSSPT---------L--------SMQLIMSLACRLMKMTPEEALHA 322 (377)
T ss_pred ---C---------ccHHHHHHCCCCEEEECCCCCCCChh---------H--------HHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 238899999999999999644 2211 1 12222222333567999999999
Q ss_pred HhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEE
Q 009410 416 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 484 (535)
Q Consensus 416 ~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~ 484 (535)
+|.|||+++|+++++|+|++||.|||||+|.+++..+ |+... ..+|..||++||+
T Consensus 323 ~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~------------~~~~~--~~~v~~v~v~G~~ 377 (377)
T TIGR01224 323 ATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEI------------PYHYG--VNHVHAVIKNGNI 377 (377)
T ss_pred HHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHh------------hhhcC--CCCceEEEECCCC
Confidence 9999999999987799999999999999998866333 22211 2489999999984
|
This enzyme catalyzes the third step in histidine degradation. |
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-31 Score=264.94 Aligned_cols=343 Identities=15% Similarity=0.066 Sum_probs=208.0
Q ss_pred CEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccC-CCC-------------------chhhhH----HH
Q 009410 78 GIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSE-------------------TIDDFF----SG 130 (535)
Q Consensus 78 G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~~-------------------~~~~~~----~~ 130 (535)
|+|++||+.... .++.+++|+.|++|+|||||+|+|+++... +.. ++++.+ .+
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 699999984321 235789999999999999999999976622 111 111111 22
Q ss_pred HHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChhhH-HHHHHHHHH--cCCCEEEEEeecC
Q 009410 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS-DEMEVMVKE--KGINSFKFFMAYK 207 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~ik~~~~~~ 207 (535)
..+++++||||+.|+... ....+...+.+-+..+.+.+.........+.. +.+....+. ...+.++..+.++
T Consensus 81 ~~E~l~~G~Tt~~d~~~~-----~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~ 155 (381)
T cd01312 81 IRQMLESGTTSIGAISSD-----GSLLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPH 155 (381)
T ss_pred HHHHHHhCCeEEEEecCC-----HHHHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCC
Confidence 344588999999998633 12455555555554443332211111011111 112222211 1234577777888
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHH-------HHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 208 GSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKR-------MIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 208 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
....++++.++++.+.|+++++++++|+.+ ..+.....+. +...+... .+..... .++ .++..
T Consensus 156 a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~--~~~~g~~------pv~-~l~~~ 226 (381)
T cd01312 156 APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLP--KPKKLAT------AID-FLDML 226 (381)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccc--cccCCCC------HHH-HHHHc
Confidence 888889999999999999999999999844 4333322211 00000000 0000000 122 22323
Q ss_pred HhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC
Q 009410 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (535)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G 359 (535)
...+.++.+.|+...++ ++++++++.|+.++.||..+ +..+... .++.+++++|
T Consensus 227 g~L~~~~~~~H~~~l~~-~~~~~l~~~g~~v~~~P~sn-------------~~lg~g~------------~p~~~~~~~G 280 (381)
T cd01312 227 GGLGTRVSFVHCVYANL-EEAEILASRGASIALCPRSN-------------RLLNGGK------------LDVSELKKAG 280 (381)
T ss_pred CCCCCCcEEEECCcCCH-HHHHHHHHcCCeEEECcchh-------------hhhcCCC------------cCHHHHHHCC
Confidence 34567889999999887 88999999999999998752 1122211 2389999999
Q ss_pred CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCc
Q 009410 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDA 439 (535)
Q Consensus 360 v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~A 439 (535)
+++++|||+...+...+ .|. ++++.....+.. ...+++.++|+++|.|+|+++|++ .|+|++||+|
T Consensus 281 v~v~lGtD~~~~~~~~d-----~~~------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~gA~alg~~--~Gsle~Gk~A 346 (381)
T cd01312 281 IPVSLGTDGLSSNISLS-----LLD------ELRALLDLHPEE-DLLELASELLLMATLGGARALGLN--NGEIEAGKRA 346 (381)
T ss_pred CcEEEeCCCCccCCCCC-----HHH------HHHHHHHhcccc-cccCCHHHHHHHHHHHHHHHhCCC--CCccCCCCcc
Confidence 99999999654322211 111 222222211110 112688999999999999999994 8999999999
Q ss_pred cEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCE
Q 009410 440 DIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 483 (535)
Q Consensus 440 Dlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr 483 (535)
|||++|.+.+. .+. .+.. ...+. .++|+.|||+||
T Consensus 347 Dlvv~d~~~~~-~~~---~~~~-~~~~~----~~~v~~v~v~G~ 381 (381)
T cd01312 347 DFAVFELPGPG-IKE---QAPL-QFILH----AKEVRHLFISGK 381 (381)
T ss_pred cEEEEeCCCcC-CCC---ccHH-HHHHc----cCCCCEEEecCC
Confidence 99999987651 111 1111 11121 358999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-30 Score=259.51 Aligned_cols=351 Identities=21% Similarity=0.207 Sum_probs=209.8
Q ss_pred EEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHH
Q 009410 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (535)
Q Consensus 55 ~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~ 132 (535)
++|+|++|+|+.. ...++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+... +..... ...+
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~iD~~g~~v~PG~iD~H~H~~~~--~~~~~~---~~~~ 75 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPG--STPYGD---EPDE 75 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEEeeecCCCC--CCccCC---CHHH
Confidence 4799999999765 35689999999999998865444467899999999999999999999854 211111 3356
Q ss_pred HHHhCCcEEEeccccCCCCChHHHHHHHHHH-hc--ccccccceeeeeec-C--C--hhhHHHHHHHHHH--cCCCEEEE
Q 009410 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AK--NSCMDYGFHMAITK-W--D--EVVSDEMEVMVKE--KGINSFKF 202 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~~~--~g~~~ik~ 202 (535)
.++.+||||++|+............+...+. +. ..+++++++..... . + .-..++++++..+ .+..++|.
T Consensus 76 ~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~ 155 (380)
T PRK09237 76 VGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKA 155 (380)
T ss_pred HHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEE
Confidence 7899999999998754443333333333332 21 13333333322211 1 1 1133455555532 46788898
Q ss_pred EeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc
Q 009410 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (535)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (535)
++.+........+.++.....+.+.|+++.+|++........+. ++...
T Consensus 156 ~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~------------------------------~~l~~- 204 (380)
T PRK09237 156 RMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEIL------------------------------ELLRP- 204 (380)
T ss_pred EEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHH------------------------------hhccC-
Confidence 87654221111133444444455899999999965432111111 11111
Q ss_pred CCCEEEEEccCHHH----------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHH
Q 009410 283 NTPLYVVHVMSMDA----------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352 (535)
Q Consensus 283 ~~~~~~~H~~~~~~----------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 352 (535)
+ ..+.|+..... .+......+.|+.+..... ... ......
T Consensus 205 g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g-------------------~~~---------~~~~~~ 254 (380)
T PRK09237 205 G--DILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHG-------------------TAS---------FSFKVA 254 (380)
T ss_pred C--CEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCC-------------------CCc---------ccHHHH
Confidence 1 13566654321 1344555667766543211 000 011335
Q ss_pred HHHHhcCC-eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 353 QAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 353 ~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
..++++|+ +.+++||..+..... .| ...+...++.+.+ .+++++++++++|.|||++||+ ++.|
T Consensus 255 ~~l~~~g~~~~~l~tD~~~~~~~~----------~~---~~~l~~~~~~~~~-~g~~~~~al~~aT~n~A~~lgl-~~~G 319 (380)
T PRK09237 255 EAAIAAGILPDTISTDIYCRNRIN----------GP---VYSLATVMSKFLA-LGMPLEEVIAAVTKNAADALRL-PELG 319 (380)
T ss_pred HHHHHCCCCceEEECCCCCCCccc----------ch---HhHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC-CCCC
Confidence 56778885 569999965432110 00 1123334434443 4699999999999999999999 6789
Q ss_pred cccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
+|++||.|||++++.+... .+ +.+......+.+. ...|+.||++||+||.+-..+
T Consensus 320 ~l~~G~~ADlvv~~~~~~~-~~---~~d~~~~~~~~~~--~~~~~~~~v~G~~~~~~~~~~ 374 (380)
T PRK09237 320 RLQVGSDADLTLFTLKDGP-FT---LTDSEGDSLIGER--LLTPLATVRGGKVVLTEQGSA 374 (380)
T ss_pred cCCCCCcCCEEEEeCCCCC-cc---ccCCCCCEEEecC--CCcceEEEECCEEEEccCccc
Confidence 9999999999999965432 11 1122112222211 248999999999999874433
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=261.07 Aligned_cols=318 Identities=21% Similarity=0.191 Sum_probs=198.3
Q ss_pred EEEeCCEEEEeeCCCCCC----CCceEEecCCCEEeecccccccccccccC----------CC-----------------
Q 009410 73 VYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS----------------- 121 (535)
Q Consensus 73 I~I~~G~I~~Vg~~~~~~----~~~~vID~~G~~vlPGlID~H~H~~~~~~----------g~----------------- 121 (535)
|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..... +.
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 689999999999854332 45789999999999999999999976411 10
Q ss_pred ----CchhhhH----HHHHHHHhCCcEEEeccccCC--CCChHHHHHHHHHHhcccccccc--eeeeeecC-----Chhh
Q 009410 122 ----ETIDDFF----SGQAAALAGGTTMHIDFVIPI--NGSLTAGFEAYEKKAKNSCMDYG--FHMAITKW-----DEVV 184 (535)
Q Consensus 122 ----~~~~~~~----~~~~~~l~~GvTtv~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~ 184 (535)
.++++++ .....++++|||++.+..... .....+.++...+...+..+.+. +....... ..+.
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 0112222 234456889999998842111 11123344444443332111211 11000111 0111
Q ss_pred ----HHHHHH-HHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009410 185 ----SDEMEV-MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 185 ----~~~~~~-~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (535)
.+++.+ .....+..+++++... ...+.+.++++++.|+++|+++.+|+........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~~---------------- 221 (371)
T cd01296 161 IDLVIEEVLPAVAEENLADFCDVFCEK---GAFSLEQSRRILEAAKEAGLPVKIHADELSNIGG---------------- 221 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeecC---CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCCH----------------
Confidence 111211 1113556777775322 2346899999999999999999999965321100
Q ss_pred cccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
+..+ ...+. ..+.|+...+. +.++++++.|+.+..||..+.. .+..
T Consensus 222 ------------~~~~----~~~g~-~~i~H~~~~~~-~~i~~la~~g~~v~~~P~~~~~-------------l~~~--- 267 (371)
T cd01296 222 ------------AELA----AELGA-LSADHLEHTSD-EGIAALAEAGTVAVLLPGTAFS-------------LRET--- 267 (371)
T ss_pred ------------HHHH----HHcCC-CeeHHhcCCCH-HHHHHHHHcCCeEEEChHHHHH-------------hCCC---
Confidence 0111 11222 23567776665 8899999999999988875321 1111
Q ss_pred cCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
.+ ++++++++|+++++|||+.|..... ..+...+..++...+++++++++++|.|
T Consensus 268 ~~---------~~~~l~~~Gv~v~lgsD~~p~~~~~----------------~~l~~~~~~~~~~~~l~~~~al~~aT~~ 322 (371)
T cd01296 268 YP---------PARKLIDAGVPVALGTDFNPGSSPT----------------SSMPLVMHLACRLMRMTPEEALTAATIN 322 (371)
T ss_pred CC---------CHHHHHHCCCcEEEecCCCCCCChH----------------HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 12 2889999999999999974432211 1122223233445679999999999999
Q ss_pred HHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 420 CARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 420 ~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
||+++|+++++|+|++||.|||||+|.+++..+ ++... ..+|+.||++|
T Consensus 323 ~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~------------~~~~~--~~~v~~v~~~G 371 (371)
T cd01296 323 AAAALGLGETVGSLEVGKQADLVILDAPSYEHL------------AYRFG--VNLVEYVIKNG 371 (371)
T ss_pred HHHHhCCCCCceeeCCCCCcCEEEECCCchHhh------------hhhcC--CCCceEEEeCc
Confidence 999999987899999999999999998876433 11111 23699999998
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=264.58 Aligned_cols=355 Identities=17% Similarity=0.259 Sum_probs=214.0
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|+|..+...++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~P-- 410 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICP-- 410 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCC--
Confidence 56899999999996667788999999999999974211 1247899999999999999999998654
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEeccccCC-----CC---ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+. ...++++||||+++++... .. .....++...+......++++++... +....+++.++
T Consensus 411 g~---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pvn~Gf~gkG---~~s~l~eL~el 478 (837)
T PLN02303 411 QL---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPLNFGFTGKG---NTAKPEGLHEI 478 (837)
T ss_pred cH---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCCcEEEEccC---cccCHHHHHHH
Confidence 21 2567888888888764321 00 13566666666655566777776532 22345566666
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh---HHHHHHH--------HHHcCCCCccccc
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQKR--------MIELGITGPEGHA 260 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~---~~~~~~~--------~~~~g~~~~~~~~ 260 (535)
. +.|+.++|.+.. +..+++.+.++++.|+++++++++|+++..+ +....+. +...|+.+ +|.
T Consensus 479 i-eaGa~GfK~h~d----~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~~a~G~RpIh~~h~~Ga~g--gha 551 (837)
T PLN02303 479 I-KAGAMGLKLHED----WGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSIAAFKGRTIHTYHSEGAGG--GHA 551 (837)
T ss_pred H-HcCcEEEEECCC----CCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHHHHHCCChHHHHHhcCCCC--CCC
Confidence 6 679999987532 3467999999999999999999999987544 3323222 22223222 221
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHH---HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
|+. ++.+.+.+ ++....++. ....++... .+-.+ +|++ ++...++.-|.
T Consensus 552 ---pdi---------~~~~~~~n---vlpsstnpt~p~t~nt~~e~~--dm~m~----~h~l--~~~~~edvafa----- 603 (837)
T PLN02303 552 ---PDI---------IKVCGVKN---VLPSSTNPTRPYTKNTIDEHL--DMLMV----CHHL--DKNIPEDVAFA----- 603 (837)
T ss_pred ---cHH---------HHhcCCCC---ccCCCCCCCCCCccCchhhhc--CeEEe----ecCC--CCCCcchhhhh-----
Confidence 211 11111111 111111100 001111111 11111 1222 11111111111
Q ss_pred EEcCCCCCcccHHHHH-HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-----------cC
Q 009410 338 VMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-----------SG 405 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-----------~~ 405 (535)
..|....+.+.. -+++.|+...++||+..-..-.. ... ..+.. ..++.. ..
T Consensus 604 ----~srir~~tiaaed~l~d~G~~s~~~SDs~amgr~ge-----~i~-------r~~q~-A~k~~~~~g~l~~~~~~~d 666 (837)
T PLN02303 604 ----ESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGE-----VIT-------RTWQT-AHKMKSQRGALEPRGADND 666 (837)
T ss_pred ----hhhccchhhccchhhhccCCEEEEeccchhhCcccc-----eee-------ehHHH-HHHHHHhcCCCCCcccccc
Confidence 111111222222 35667999999999753221110 000 00111 111111 13
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 406 QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 406 ~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
..+..++|++.|+|||+++|+++++|+|++||.||||||+.+.+ ..++.+||++|++|
T Consensus 667 n~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~f----------------------g~~~~~vi~~G~iv 724 (837)
T PLN02303 667 NFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFF----------------------GAKPEMVIKGGQIA 724 (837)
T ss_pred ccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEeccccc----------------------CCCeeEEEECCEEE
Confidence 35679999999999999999999999999999999999996532 13789999999999
Q ss_pred EEC-Ceeccc
Q 009410 486 WEN-DELNVV 494 (535)
Q Consensus 486 ~~~-~~~~~~ 494 (535)
|.. |.....
T Consensus 725 y~~~gd~nas 734 (837)
T PLN02303 725 WAQMGDPNAS 734 (837)
T ss_pred EccCCCcccc
Confidence 997 555444
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=260.24 Aligned_cols=358 Identities=19% Similarity=0.200 Sum_probs=214.5
Q ss_pred cccEEEEccEEEcC------------CCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNA------------HHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~------------~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
+..+.|+|+++-+. +.....+|.|+||+|++|++....+.+.++||++|++|+|||||+|+|+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~~~~~~id~~g~~v~Pg~id~H~Hld~~~~ 89 (438)
T PRK07583 10 SGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHLDKGHI 89 (438)
T ss_pred CCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCCCCCceecCCCCcccCCcccceecccccee
Confidence 56689999886331 122467999999999999987643446889999999999999999999866411
Q ss_pred CC-----------------------Cchhh----hHHHHHHHHhCCcEEEeccccC-CC--CChHHHHHHHHHHhccc--
Q 009410 120 GS-----------------------ETIDD----FFSGQAAALAGGTTMHIDFVIP-IN--GSLTAGFEAYEKKAKNS-- 167 (535)
Q Consensus 120 g~-----------------------~~~~~----~~~~~~~~l~~GvTtv~d~~~~-~~--~~~~~~~~~~~~~~~~~-- 167 (535)
.. .+.++ +......++.+|+|+++..... .. ....+.+....+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (438)
T PRK07583 90 WPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIA 169 (438)
T ss_pred cCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCe
Confidence 00 01222 3455667789999977654331 11 11222232222222111
Q ss_pred ---ccccceeeeeecCChhhHHHHHHHHHHc-CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHH
Q 009410 168 ---CMDYGFHMAITKWDEVVSDEMEVMVKEK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVF 242 (535)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~ 242 (535)
...++++..... ..+++.+.+.+. |..+.+.+.. + -..+.+.++++.|+++|+++.+|+.. .....
T Consensus 170 ~~~v~~~p~~~~~~~----~~~eL~~~v~~~~gv~g~~~~~~----~-~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~ 240 (438)
T PRK07583 170 LQAVSLVPLDAYLTD----AGERLADLVAEAGGLLGGVTYMN----P-DLDAQLDRLFRLARERGLDLDLHVDETGDPAS 240 (438)
T ss_pred EEEEEecChhhccCc----hHHHHHHHHHHcCCEEeCCCCCC----C-CHHHHHHHHHHHHHHhCCCcEEeECCCCCchH
Confidence 111222221111 124455544232 2333222211 1 15688999999999999999999943 22211
Q ss_pred HHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc--CCCEEEEEccCHHH------HHHHHHHHHcCCcEEecc
Q 009410 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV--NTPLYVVHVMSMDA------MEEIAKARKAGQRVIGEP 314 (535)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~H~~~~~~------~~~~~~~~~~g~~v~~~~ 314 (535)
... ....+..... ..++++.|+..... .+.++++++.|+.++.||
T Consensus 241 ~~l---------------------------~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P 293 (438)
T PRK07583 241 RTL---------------------------KAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSLP 293 (438)
T ss_pred HHH---------------------------HHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEECc
Confidence 111 1111111122 24688999976431 377999999999999998
Q ss_pred ccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHH
Q 009410 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERM 394 (535)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l 394 (535)
............ ..|.. ....++++++++|+++++|||+...... +|.+.. .++ .+
T Consensus 294 ~~~~~l~~~~~~------------~~p~~---~~~~~v~~l~~aGV~valGtD~~~d~~~-------p~g~~~-~~~-~~ 349 (438)
T PRK07583 294 MCNLYLQDRQPG------------RTPRW---RGVTLVHELKAAGIPVAVASDNCRDPFY-------AYGDHD-MLE-VF 349 (438)
T ss_pred chhhhhcCCCcC------------CCCCC---CCcchHHHHHHCCCeEEEEeCCCCCCCC-------CCCCcC-HHH-HH
Confidence 753221111000 00111 1124588999999999999997532111 111000 111 11
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeE
Q 009410 395 HLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGK 474 (535)
Q Consensus 395 ~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~ 474 (535)
.... ... ..+.++.++|+++|.|||+++|+++ +|+|++||.|||||+|.+++..+.. . ...
T Consensus 350 ~~a~-~~~-~~~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~----~------------~~~ 410 (438)
T PRK07583 350 REAV-RIL-HLDHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELLS----R------------PQS 410 (438)
T ss_pred HHHH-HHH-hcCCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHHh----c------------CCC
Confidence 1111 111 2357899999999999999999965 8999999999999999987644311 0 235
Q ss_pred EEEEEECCEEEEEC
Q 009410 475 VEVTIAGGRVVWEN 488 (535)
Q Consensus 475 v~~v~~~Gr~V~~~ 488 (535)
++.||++|++|.+.
T Consensus 411 ~~~V~~~G~~v~~~ 424 (438)
T PRK07583 411 DRIVLRAGKPIDTT 424 (438)
T ss_pred ccEEEECCEEeccc
Confidence 77899999988755
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=249.42 Aligned_cols=359 Identities=19% Similarity=0.214 Sum_probs=205.7
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCC--CCceEEecCCCEEeecccccccccccccCC-CCchhhhHHHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~--~~~~vID~~G~~vlPGlID~H~H~~~~~~g-~~~~~~~~~~~ 131 (535)
++|+|++|++++...+++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+...... ...........
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~ 81 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTL 81 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccccCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHH
Confidence 579999999977667889999999999999865332 357899999999999999999998653100 01112222345
Q ss_pred HHHHhCCcEEEeccccCCCC-ChH----HHHHHHHHHhcccccccceeeeee-cCChhhHHHHHHHHHHcCCCEEEEEee
Q 009410 132 AAALAGGTTMHIDFVIPING-SLT----AGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMA 205 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (535)
..++++|+||++|+...... ... ...+...+.+-+.+...+++.... ...+....++.......+. +. ....
T Consensus 82 ~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~-~~~~ 159 (387)
T cd01308 82 SDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIGV-GE-IAIS 159 (387)
T ss_pred HHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcCc-ce-EEEc
Confidence 67799999999998733221 112 223333334444333322221000 0011111122221111221 11 1112
Q ss_pred cCCCCcCCHHHHHHHHHHHHhcCC------eEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 206 YKGSFMINDELLIEGFKRCKSLGA------LAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
...........+.++...++..+. .+++|..... ..+.+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~------------------------------~~~~~i~~~~ 209 (387)
T cd01308 160 DHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGK------------------------------RALSPIFELI 209 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCch------------------------------HHHHHHHHHH
Confidence 222334567777778777775433 3566664221 1233344444
Q ss_pred HhcCCCE-EEEEccCHHHHH---HHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHH
Q 009410 280 EFVNTPL-YVVHVMSMDAME---EIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAA 355 (535)
Q Consensus 280 ~~~~~~~-~~~H~~~~~~~~---~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 355 (535)
++.|.++ ++.|.......+ ......+.|..+-...... ..+...|+. .....++.+
T Consensus 210 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~-----------------~~~~~~~~~---~~~~~l~~~ 269 (387)
T cd01308 210 EETEIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSID-----------------PQFRKEGEV---RPSEALKRL 269 (387)
T ss_pred HhcCCCcceeECCcccCCHHHHHHHHHHHHcCCcEEEECCCC-----------------ccccccCcc---ChHHHHHHH
Confidence 5545544 444443332222 1223444565443221100 000011111 124668888
Q ss_pred HhcCC---eEEEeCCCCCCChhhhhcCCCCcccCcc-hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 356 LATGI---LQLVGTDHCAFNSTQKAFGIDDFRKIPN-GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 356 l~~Gv---~~~lgtD~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
+++|+ +++++||+......... .+.+..... +.+..+..+. .+++.+++|++++++++|.|||+++|+++ +|
T Consensus 270 ~~~g~~~d~i~l~TD~~~~~p~~~~--~g~~~~~g~~~~~~~~~~~~-~~v~~~~i~~~~al~~~T~npA~~lg~~~-~G 345 (387)
T cd01308 270 LEQGVPLERITFSSDGNGSLPKFDE--NGNLVGLGVGSVDTLLREVR-EAVKCGDIPLEVALRVITSNVARILKLRK-KG 345 (387)
T ss_pred HHhCCCCCcEEEEECCCCCcccCcc--CCeEEecCcCcHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHhCCCC-CC
Confidence 99986 37999997422100000 001110001 3343333333 56667789999999999999999999954 89
Q ss_pred cccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
+|++|+.|||+|+|.+ .++..|+++|++|+++|++...
T Consensus 346 ~i~~G~~ADlvv~d~~-------------------------~~~~~~~~~G~~v~~~~~~~~~ 383 (387)
T cd01308 346 EIQPGFDADLVILDKD-------------------------LDINSVIAKGQIMVRNGKLLVK 383 (387)
T ss_pred CcCCCCcCCEEEEcCC-------------------------CCEEEEEECCEEEEECCeEeec
Confidence 9999999999999965 1678899999999999998764
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=250.82 Aligned_cols=318 Identities=16% Similarity=0.152 Sum_probs=231.9
Q ss_pred eecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHH-HHHhccc-ccccceeeeeecC
Q 009410 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAY-EKKAKNS-CMDYGFHMAITKW 180 (535)
Q Consensus 104 lPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 180 (535)
+||+||+|+|+..+ +.+.+..+++.++| |++++|....+. ...+.++.. .+..... +.++.++......
T Consensus 3 ~Pg~iD~h~h~~~~-------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (335)
T cd01294 3 IPRPDDMHLHLRDG-------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT 74 (335)
T ss_pred CCCcceeEecCCCc-------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc
Confidence 79999999998742 77888899999999 999999754332 223323333 3333333 4555554444222
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEEeecC----CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009410 181 DEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (535)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (535)
.....+++.++.+..|+.++|+|+... +....+.+.+..+++.+.+.|+++.+|+++......
T Consensus 75 ~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~------------- 141 (335)
T cd01294 75 ENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKID------------- 141 (335)
T ss_pred CCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCccccc-------------
Confidence 222356777776344999999986421 111235688999999999999999999987543110
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhc-CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccc
Q 009410 257 EGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (535)
+...+.+.+.++..+++++ +.++|+.|+++.+.++.++.+++ +|++++++||++++.+.+.... .+.
T Consensus 142 -------~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~~~~--~g~ 209 (335)
T cd01294 142 -------VLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE---NVAATITPHHLLLTRDDLLGGG--LNP 209 (335)
T ss_pred -------chhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC---CcEEEEchhHheeeHHHhcCCC--CCC
Confidence 0011123345677888875 99999999999888777765543 7999999999999988764311 257
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcCCeE-EEeCCCCCCChhhhhcCCCCcccCcc--hHHHHHHHHHHHHHhcCCCCHHHH
Q 009410 336 KYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPN--GIEERMHLVWDTMVESGQISVTDY 412 (535)
Q Consensus 336 ~~~~~p~~r~~~~~~~~~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~--g~~~~l~~~~~~~~~~~~ls~~ea 412 (535)
.++++||+|...+++++|+.+++|... .++|||+|+....+.. ++. .++ +++..++.++ ..++ +++|++++
T Consensus 210 ~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g-~~Gi~~~~~~l~~~~-~~~~-~~l~l~~~ 283 (335)
T cd01294 210 HLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG-CAGIFSAPIALPYLA-EVFE-EHNALDKL 283 (335)
T ss_pred CeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC-CccccCHHHHHHHHH-HHHh-ccCCHHHH
Confidence 899999999999999999999999999 5999999998877642 333 233 5555677776 4444 48999999
Q ss_pred HHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCee
Q 009410 413 VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 470 (535)
Q Consensus 413 l~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~ 470 (535)
++..+.|||++||+.+++|+ |++.+ ..|.++++++.++..|+||+|.+
T Consensus 284 v~~~s~nPA~i~gl~~~kg~--------i~~~~--~~~~v~~~~~~s~~~~sp~~g~~ 331 (335)
T cd01294 284 EAFASDNGPNFYGLPPNKKT--------ITLVK--EPWKVPEKIPFGNNGVVPFRAGE 331 (335)
T ss_pred HHHHHhHHHHHhCCCCCCCe--------EEEEe--eceEcCchhccCCCceecccCCc
Confidence 99999999999999665555 44554 78999999999999999999864
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=247.49 Aligned_cols=350 Identities=14% Similarity=0.099 Sum_probs=203.8
Q ss_pred cEEEEccEEEcCCC----------ceeeeEEEeCCEEEEeeCCCCC-CCCceEEecCCCEEeecccccccccccccC-CC
Q 009410 54 KILIKGGTVVNAHH----------QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS 121 (535)
Q Consensus 54 ~~vi~n~~vi~~~~----------~~~~~I~I~~G~I~~Vg~~~~~-~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~ 121 (535)
.+.|+|+++..... ...++|+|+||+|++|++.... +.+.++||++|++|+|||||+|+|+..... +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~ 84 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYGGP 84 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCCCCCCCceEeCCCCEEecCEEeeeecccchhhccc
Confidence 35677766543222 2467999999999999986332 234789999999999999999999986421 11
Q ss_pred Cc-------------------h---hhh----HHHHHHHHhCCcEEEeccccCCCC----ChHHHHHHHHHHhccccccc
Q 009410 122 ET-------------------I---DDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDY 171 (535)
Q Consensus 122 ~~-------------------~---~~~----~~~~~~~l~~GvTtv~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 171 (535)
.. + ... ......++.+|+|+++++...... ......+...+.........
T Consensus 85 ~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~~~v~~~~ 164 (410)
T PRK06846 85 WKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYKDGFTYEI 164 (410)
T ss_pred hhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhhCcceEEE
Confidence 00 0 000 122344567899999887643222 11111122222111111111
Q ss_pred ceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHH
Q 009410 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIE 250 (535)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~ 250 (535)
..+........+..+.+++.. +.|++.++.. .+......+.+.+.++++.|+++|+++++|+..... ....
T Consensus 165 ~a~~~~g~~~~~~~~lL~~al-~~Ga~~i~gl-~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~------ 236 (410)
T PRK06846 165 VAFPQHGLLRSNSEPLMREAM-KMGAHLVGGV-DPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVAT------ 236 (410)
T ss_pred EeccCcccCCccHHHHHHHHH-HcCCCEEeCC-CCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHH------
Confidence 111110000122334566655 7788877643 333334567899999999999999999999854321 1111
Q ss_pred cCCCCcccccccCChhhHHHHHHHHHHHHHhcC--CCEEEEEccCH---HH---HHHHHHHHHcCCcEEeccccceEeeC
Q 009410 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSM---DA---MEEIAKARKAGQRVIGEPVVSGLVLD 322 (535)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~~---~~---~~~~~~~~~~g~~v~~~~~~~~~~~~ 322 (535)
+.+.++...+.+ .++++.|+... +. .+.++++++.|+.|+.+..
T Consensus 237 ---------------------~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~~~------- 288 (410)
T PRK06846 237 ---------------------IKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISITSTVP------- 288 (410)
T ss_pred ---------------------HHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEeCC-------
Confidence 112222222222 27889999752 11 1225678999988876422
Q ss_pred cccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH
Q 009410 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV 402 (535)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 402 (535)
.+..+ +| +++++++|+++++|||+...... ++... .+...+..... ..
T Consensus 289 ----------~~~g~---~p---------~~~l~~~Gv~v~lGtD~~~~~~~-------p~~~~--d~~~~~~~~~~-~~ 336 (410)
T PRK06846 289 ----------IGRLH---MP---------IPLLHDKGVKVSLGTDSVIDHWS-------PFGTG--DMLEKANLLAE-LY 336 (410)
T ss_pred ----------CCCCC---CC---------HHHHHhCCCeEEEecCCCCCCCc-------CCCCC--CHHHHHHHHHH-Hh
Confidence 11111 22 89999999999999996421111 11000 11112222211 00
Q ss_pred h-cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEEC
Q 009410 403 E-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAG 481 (535)
Q Consensus 403 ~-~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~ 481 (535)
. ...-+..++|+++|.++ ..++.++.+|+|++||.|||||+|.+++.... +. ...|..||++
T Consensus 337 ~~~~~~~~~~~l~~~T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~~------------~~----~~~v~~v~~~ 399 (410)
T PRK06846 337 RWSDERSLSRSLALATGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAEAV------------AR----QSPRTAVFHK 399 (410)
T ss_pred cCCCHHHHHHHHHHHcCCc-cccccCCCccCCCCCCcccEEEEeCCChHHHH------------Hh----cCCceEEEEC
Confidence 0 01123457899999885 56887777899999999999999976532110 00 2479999999
Q ss_pred CEEEEEC
Q 009410 482 GRVVWEN 488 (535)
Q Consensus 482 Gr~V~~~ 488 (535)
|++||..
T Consensus 400 G~~v~~~ 406 (410)
T PRK06846 400 GQLVAGS 406 (410)
T ss_pred CEEEeee
Confidence 9999985
|
|
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=242.03 Aligned_cols=316 Identities=23% Similarity=0.193 Sum_probs=185.0
Q ss_pred CCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCC--------chh-------------hhHHHHHHHH
Q 009410 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE--------TID-------------DFFSGQAAAL 135 (535)
Q Consensus 77 ~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~--------~~~-------------~~~~~~~~~l 135 (535)
||+|++|+++...+.++++||++|++|+|||||+|+|++....+.. ... ........+.
T Consensus 1 ~gkI~~i~~~~~~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~ 80 (359)
T cd01309 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRAR 80 (359)
T ss_pred CCEEEEEcCCCCCCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHH
Confidence 7999999998766667899999999999999999999987622110 000 1123456778
Q ss_pred hCCcEEEeccccCCCC-C-------hHH-HHHHHHHHhcc-cccccceeeeeec-------CCh-hhHHHHHHHHHH---
Q 009410 136 AGGTTMHIDFVIPING-S-------LTA-GFEAYEKKAKN-SCMDYGFHMAITK-------WDE-VVSDEMEVMVKE--- 194 (535)
Q Consensus 136 ~~GvTtv~d~~~~~~~-~-------~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~--- 194 (535)
++|||++.-.++..+- . ... ..+........ ..+.++....... .+. .....+++...+
T Consensus 81 ~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~~a~~ 160 (359)
T cd01309 81 AGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKAQE 160 (359)
T ss_pred hcCceEEEecCCCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHHHHHH
Confidence 9999999755322211 0 000 00100000000 1111111000000 000 011111111100
Q ss_pred cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHH
Q 009410 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (535)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 274 (535)
......+ +....+.....+..+..++..++.. +++.+|+.... ++.+
T Consensus 161 y~~~~~~-~~~~~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~~~-------------------------------~i~~ 207 (359)
T cd01309 161 YGRKYDL-GKNAKKDPPERDLKLEALLPVLKGE-IPVRIHAHRAD-------------------------------DILT 207 (359)
T ss_pred HHHHhhh-hhhcccCCCCCCccHHHHHHHHcCC-eeEEEEeCCHH-------------------------------HHHH
Confidence 0000000 0000000111223344555544433 78888887543 3555
Q ss_pred HHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHH
Q 009410 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354 (535)
Q Consensus 275 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 354 (535)
++++.++++.++.+.|+... .+.++++++.|+.++.+|...... ..+. ..........
T Consensus 208 ~l~~~~e~g~~~~i~H~~~~--~~~~~~la~~gv~v~~~P~~~~~~-~~~~-------------------~~~~~~~~~~ 265 (359)
T cd01309 208 AIRIAKEFGIKITIEHGAEG--YKLADELAKHGIPVIYGPTLTLPK-KVEE-------------------VNDAIDTNAY 265 (359)
T ss_pred HHHHHHHcCCCEEEECchhH--HHHHHHHHHcCCCEEECccccccc-cHHH-------------------hhcchhhHHH
Confidence 66677778888889999876 378899999999999887642100 0000 0011244778
Q ss_pred HHhcC-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccc
Q 009410 355 ALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAI 433 (535)
Q Consensus 355 ~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI 433 (535)
++++| ++++++||+...... .+......+. ..+++.+++|+++|.|||+++|+++++|+|
T Consensus 266 l~~aGGv~valgsD~~~~~~~------------------~l~~~~~~a~-~~gl~~~~al~~~T~n~A~~lg~~~~~G~l 326 (359)
T cd01309 266 LLKKGGVAFAISSDHPVLNIR------------------NLNLEAAKAV-KYGLSYEEALKAITINPAKILGIEDRVGSL 326 (359)
T ss_pred HHHcCCceEEEECCCCCccch------------------hHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCCCCcccC
Confidence 89997 999999997432111 1111121222 346999999999999999999998889999
Q ss_pred cCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 434 LVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 434 ~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
++||.|||||+|++++.. ..+|..||++|++||
T Consensus 327 ~~G~~ADlvv~d~dpl~~--------------------~~~v~~v~i~G~~v~ 359 (359)
T cd01309 327 EPGKDADLVVWNGDPLEP--------------------TSKPEQVYIDGRLVY 359 (359)
T ss_pred CCCCccCEEEECCCcccc--------------------cCcccEEEECCEEeC
Confidence 999999999999874421 248999999999986
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=242.31 Aligned_cols=354 Identities=20% Similarity=0.227 Sum_probs=202.1
Q ss_pred CcccEEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CCCchhhhH
Q 009410 51 SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFF 128 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~~~~~~~~ 128 (535)
|.++++|+|++|++++.. .+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|...... ...+.+.+.
T Consensus 1 ~~~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~ 80 (380)
T TIGR00221 1 MAESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLE 80 (380)
T ss_pred CCceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCCCCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHH
Confidence 346799999999998765 468999999999999876443445689999999999999999999865311 123457788
Q ss_pred HHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh--cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEee
Q 009410 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (535)
...+.+++.|||+++++....+. ...+.++.+.+.. ......+++|...+..+.+ ..|+..-..
T Consensus 81 ~~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~----------~~Gah~~~~--- 147 (380)
T TIGR00221 81 IMSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPE----------KKGAHPPEY--- 147 (380)
T ss_pred HHHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChh----------hcCCCCHHH---
Confidence 88999999999999988654443 4555566555432 1234567777766654431 112211000
Q ss_pred cCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCC
Q 009410 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (535)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (535)
...++.+.++++++.+. ..+++..=+++.....+.++.+.+.|+....+|.... ++++.++++. |.+
T Consensus 148 ---i~~p~~~~~~~~~~~~~-~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~-----~~~~~~a~~~----Ga~ 214 (380)
T TIGR00221 148 ---IREPDVELFKKFLCEAG-GVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNAT-----YELAKAAFKA----GAT 214 (380)
T ss_pred ---hhCcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCC-----HHHHHHHHHc----CCC
Confidence 01234455555554332 2233333333322233444444444444433443221 1222233222 222
Q ss_pred EEEEEccCHHH------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhc-
Q 009410 286 LYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT- 358 (535)
Q Consensus 286 ~~~~H~~~~~~------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~- 358 (535)
+++|+.+.-. .-.+..+-.. -.++++...+..++.+ ..++-+.+.
T Consensus 215 -~~THlfNaM~~~~hR~pg~vga~l~~-~~~~~elI~Dg~Hv~p--------------------------~~~~~~~r~k 266 (380)
T TIGR00221 215 -HATHLYNAMSPIHHREPGVIGAVLDH-DDVYTEIIADGIHIHP--------------------------LNIRLAKKLK 266 (380)
T ss_pred -eeeeeccCCCCcCCCCCcHHHHHhcC-CCcEEEEEcCCCcCCH--------------------------HHHHHHHHhc
Confidence 2344433110 0000100000 0123333333222222 223322222
Q ss_pred C-CeEEEeCCCCCCCh---hhhhcCC-------CCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHc
Q 009410 359 G-ILQLVGTDHCAFNS---TQKAFGI-------DDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 424 (535)
Q Consensus 359 G-v~~~lgtD~~~~~~---~~~~~~~-------~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~l 424 (535)
| -++.+-||.....- ....++. +....... |....+...++.+++..+++++++++++|.|||+++
T Consensus 267 g~~~~~lvtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~l 346 (380)
T TIGR00221 267 GDSKLCLVTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARAL 346 (380)
T ss_pred CCCcEEEEeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHh
Confidence 3 24666666432111 0000000 00000001 556677777888888888999999999999999999
Q ss_pred CCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCE
Q 009410 425 NVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 483 (535)
Q Consensus 425 gl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr 483 (535)
|+++++|+|++|+.|||+|+|.+ .+|+.||++|+
T Consensus 347 gl~~~~G~i~~G~~ADlvv~d~~-------------------------~~v~~t~~~G~ 380 (380)
T TIGR00221 347 GIDDRLGSVTVGKDANLVVFTPD-------------------------FEVILTIVNGN 380 (380)
T ss_pred CCCCCCcccCCCCcCCEEEECCC-------------------------CCEEEEEeCCC
Confidence 99766899999999999999964 37899999985
|
|
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=235.20 Aligned_cols=360 Identities=19% Similarity=0.199 Sum_probs=221.4
Q ss_pred eeeeEEEeC-CEEEEeeCCCCCC----------CCceEEecCCCEEeeccccccccccccc----CC-------------
Q 009410 69 QIADVYVED-GIVVAVQPNINVG----------DDVKVLDATGKFVMPGGIDPHTHLAMEF----MG------------- 120 (535)
Q Consensus 69 ~~~~I~I~~-G~I~~Vg~~~~~~----------~~~~vID~~G~~vlPGlID~H~H~~~~~----~g------------- 120 (535)
++..+.|.| |+|+.|++....+ +..++++.+|.++||||||+|+|....+ .|
T Consensus 26 e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~ 105 (439)
T KOG3968|consen 26 EGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYT 105 (439)
T ss_pred cCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhcce
Confidence 466778887 9999999854322 2457899999999999999999942221 01
Q ss_pred -----CCch-hhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccc-----cceeeee--ecCChh
Q 009410 121 -----SETI-DDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD-----YGFHMAI--TKWDEV 183 (535)
Q Consensus 121 -----~~~~-~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~ 183 (535)
.... ++. ....+..+++|+||+....+.........++...+.+.+..+. .+.+... ....++
T Consensus 106 f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~ 185 (439)
T KOG3968|consen 106 FPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEE 185 (439)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhHHH
Confidence 1111 221 2234567899999998665433334455555666666664332 1111100 111122
Q ss_pred hHHHHHHHH---HHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEc-CChhhHHHHHHHHHHcCCCCcccc
Q 009410 184 VSDEMEVMV---KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 184 ~~~~~~~~~---~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~~~~~~~~~~g~~~~~~~ 259 (535)
..+...++. ++.+-......+.+.....++.+.+....+.|+...+++..|. ++..++....+.+-.
T Consensus 186 si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~--------- 256 (439)
T KOG3968|consen 186 SIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPE--------- 256 (439)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhh---------
Confidence 222222222 1222222222122333456788888888888988999999998 555555544433211
Q ss_pred cccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
......+.+.....+.+..+.|+...++ +.++.++++|..++.||+... .++++.
T Consensus 257 ---------~~~y~~~yd~~~lL~~ktvlaH~~hl~d-~ei~~l~k~g~svshCP~Sn~-------------~L~sG~-- 311 (439)
T KOG3968|consen 257 ---------KLSYTDVYDKGGLLTEKTVLAHLEHLSD-EEIELLAKRGCSVSHCPTSNS-------------ILGSGI-- 311 (439)
T ss_pred ---------cccchHHHHHhcccchHhHhhhheecCc-hhHHHHHhcCCceEECCcchh-------------hhccCC--
Confidence 1112223333445555556777776666 889999999999999999732 233332
Q ss_pred cCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
.+++++++.|+.+.+|||.++++....+. ..+.+...+.......+||++|+|.+||+|
T Consensus 312 ----------~~vr~lL~~~v~VgLGtDv~~~s~l~a~r-----------~A~~~s~hL~~~~~~~~Ls~~e~L~lATi~ 370 (439)
T KOG3968|consen 312 ----------PRVRELLDIGVIVGLGTDVSGCSILNALR-----------QAMPMSMHLACVLDVMKLSMEEALYLATIG 370 (439)
T ss_pred ----------ccHHHHHhcCceEeecCCccccccHHHHH-----------HHHHHHHHHHhccCcccCCHHHHHHHHhcc
Confidence 23899999999999999987644332110 011122222111134679999999999999
Q ss_pred HHHHcCCCCCCccccCCCCccEEEEcCCCce----eeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 420 CARIFNVYPRKGAILVGSDADIIIFNPNSSF----EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 420 ~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~----~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
+|+++|+++..|++++||.+|++++|.+.+. ..+ ...+......|.|- .+++..|||+|+.|+.
T Consensus 371 GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l~~~~--~~~~lI~~~v~~g~--drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 371 GAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPLYRFS--GHHDLISKVVYNGD--DRNIAEVFVAGKLVKQ 438 (439)
T ss_pred chhhccCCCcccceecccccceEEEeCCCCcchhhhcc--chHHHHHHHHhcCC--CCceEEEEEccEEecc
Confidence 9999999999999999999999999987651 111 01111112234332 3489999999999975
|
|
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=233.32 Aligned_cols=351 Identities=23% Similarity=0.298 Sum_probs=217.6
Q ss_pred EEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccccc--CCCCchhhhHHHH
Q 009410 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MGSETIDDFFSGQ 131 (535)
Q Consensus 55 ~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~g~~~~~~~~~~~ 131 (535)
.+|+|++|+++..+ .++.++|+||+|.+|.+ .+.|.+.++||.+|.+|.|||||.|+|-+... +...+.+.+....
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~ 80 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMA 80 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCCCcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHH
Confidence 57899999999987 56699999999999998 34567899999999999999999999988762 2233556677778
Q ss_pred HHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC
Q 009410 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (535)
+..+++|+|++.-.....+. ...+.++...+... ....-.+.|...+..+.+ ++|+..-+. .
T Consensus 81 ~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~----------kkGAh~~~~------i 144 (380)
T COG1820 81 EAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPE----------KKGAHNPEY------I 144 (380)
T ss_pred HHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHh----------hccCCCHHH------h
Confidence 88899999999844322221 34444444433332 222334555544444321 333332211 1
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
...+++.+.++++.++. .+....=+++.....+.+..+.+.|+....+|.... ++...++++. |.. +.+
T Consensus 145 r~~~~~~~~~~~~~a~g-~i~~vTlAPE~~~~~e~i~~l~~~giivs~GHS~At-----ye~~~~a~~~----Ga~-~~T 213 (380)
T COG1820 145 RPPDPEELEQLIAAADG-LIKLVTLAPELDGTKELIRLLANAGIVVSIGHSNAT-----YEQARAAFEA----GAT-FVT 213 (380)
T ss_pred CCCCHHHHHHHHhhccC-ceEEEEECCCCCCCHHHHHHHHhCCeEEEecCcccc-----HHHHHHHHHh----Ccc-EEE
Confidence 23467778877777765 344444444443345566666666766555555322 2333343333 222 456
Q ss_pred EccCHHHHHHHHHHHHcCC--------cEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhc--C
Q 009410 290 HVMSMDAMEEIAKARKAGQ--------RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--G 359 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~--G 359 (535)
|+.+.-. -+. -++.|+ .++++...+.+++++ ..++-+++. +
T Consensus 214 HlfNaMs--~l~-hREPGvvGA~L~~~~~~~eiIaDG~HVhP--------------------------~~~~ia~~~kg~ 264 (380)
T COG1820 214 HLFNAMS--GLH-HREPGVVGAALDNPDVYAEIIADGVHVHP--------------------------AAIRLALKAKGG 264 (380)
T ss_pred eeccCCC--CCC-CCCCcccceeecCCCeEEEEEccCcccCH--------------------------HHHHHHHhccCC
Confidence 6654321 111 111221 133333333333322 333333332 3
Q ss_pred CeEEEeCCCCCCChhh---hhcCC------CCcccCcc----hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 360 ILQLVGTDHCAFNSTQ---KAFGI------DDFRKIPN----GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 360 v~~~lgtD~~~~~~~~---~~~~~------~~~~~~~~----g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
-++.+-||.....-.. ..++. +.....+. |....|...++.+++..+.+++||++|+|.+||+.+|+
T Consensus 265 ~~i~LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl 344 (380)
T COG1820 265 DKIVLVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGL 344 (380)
T ss_pred ceEEEEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCC
Confidence 5688888854322110 00000 01111111 44556777888899999999999999999999999999
Q ss_pred CCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 427 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 427 ~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
++++|+|++||.||||+||.| -+|..||++|+++++
T Consensus 345 ~~~~G~i~~G~~Adlvvld~d-------------------------~~v~~T~i~G~~~~~ 380 (380)
T COG1820 345 DDRLGSIKPGKDADLVVLDDD-------------------------LNVKATWINGEKVFN 380 (380)
T ss_pred cCcccccCCCcccCEEEECCC-------------------------CcEEEEEECCEEeeC
Confidence 999999999999999999954 389999999999874
|
|
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=240.52 Aligned_cols=349 Identities=19% Similarity=0.234 Sum_probs=205.9
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CCCchhhhHHHHHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSGQAA 133 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~~~~~~~~~~~~~ 133 (535)
++|+|++|+++....+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|...... .....+.+....+.
T Consensus 1 ~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~ 80 (374)
T cd00854 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEA 80 (374)
T ss_pred CEEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcccCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHH
Confidence 37899999998445688999999999999886544445689999999999999999999865311 12235777888899
Q ss_pred HHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc--cccccceeeeeecCC-------------hhhHHHHHHHHHHcCC
Q 009410 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN--SCMDYGFHMAITKWD-------------EVVSDEMEVMVKEKGI 197 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~ 197 (535)
++++|||+++++...... ...+.+..+.+.... ....++++...+..+ ....++++++. ..+.
T Consensus 81 ~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~-~~~~ 159 (374)
T cd00854 81 LAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWL-EAAG 159 (374)
T ss_pred HHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHH-HhcC
Confidence 999999999998644332 344444444443221 122232232221111 11235667777 4566
Q ss_pred CEEEEEeecCCCCcCCHHHH--HHHHHHHHhcCCeEE-EEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHH--HHH
Q 009410 198 NSFKFFMAYKGSFMINDELL--IEGFKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEG--EAT 272 (535)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~ 272 (535)
+.+|++ .+.+|.. .+++++++++|+++. .|.... ....+...+.|+....+..+..+..... ..+
T Consensus 160 ~~ik~~-------tlaPE~~~~~~~i~~~~~~gi~v~~GH~~a~---~~~~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~ 229 (374)
T cd00854 160 GLIKLV-------TLAPELDGALELIRYLVERGIIVSIGHSDAT---YEQAVAAFEAGATHVTHLFNAMSPLHHREPGVV 229 (374)
T ss_pred CCEEEE-------EECCCCCChHHHHHHHHHCCeEEEeeCCcCC---HHHHHHHHHcCCCeeeECCCCCCCcCCCCCcHH
Confidence 889986 2355656 889999999999995 998643 1223344456776655443322221110 001
Q ss_pred HHHHHHHHhcCCCE-EEEEccCHHHHHHHHHHHHc-C-CcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccH
Q 009410 273 TRAIRLAEFVNTPL-YVVHVMSMDAMEEIAKARKA-G-QRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (535)
Q Consensus 273 ~~~~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~-g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 349 (535)
..+++.. .... .+.|....+. +.++.+.+. | -.+..++-......-++ ..|..... .
T Consensus 230 ~a~l~~~---~~~~~li~dg~Hv~~-~~~~~~~r~~g~~~~~lvtD~~~~~G~~~----------g~y~~~~~-~----- 289 (374)
T cd00854 230 GAALSDD---DVYAELIADGIHVHP-AAVRLAYRAKGADKIVLVTDAMAAAGLPD----------GEYELGGQ-T----- 289 (374)
T ss_pred HHhhcCC---CCeEEEEcCCCcCCH-HHHHHHHHhcCCCcEEEEeccccccCCCC----------CeEEECCE-E-----
Confidence 1111110 1112 2344433333 445555444 3 33333322111000000 11110000 0
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 350 ~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
+ ...+..+.+.++... |-...+...++.+++.++++++++++++|.|||+++|++++
T Consensus 290 --~---~~~~~~~~~~~g~la------------------G~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~~~ 346 (374)
T cd00854 290 --V---TVKDGVARLADGTLA------------------GSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDDR 346 (374)
T ss_pred --E---EEECCEEEcCCCCee------------------ehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCCCC
Confidence 0 001112223322111 11234555565667777899999999999999999999777
Q ss_pred CccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 430 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 430 ~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
.|+|++|+.|||+++|.+ .+|+.||++|
T Consensus 347 ~G~i~~G~~ADlvv~d~~-------------------------~~v~~~~~~G 374 (374)
T cd00854 347 KGSLKPGKDADLVVLDDD-------------------------LNVKATWING 374 (374)
T ss_pred cCCcCCCCcCCEEEECCC-------------------------CcEEEEEeCc
Confidence 999999999999999965 3788999887
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=231.84 Aligned_cols=398 Identities=22% Similarity=0.267 Sum_probs=226.6
Q ss_pred EEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccccc--CC-CCchhhhH--
Q 009410 57 IKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MG-SETIDDFF-- 128 (535)
Q Consensus 57 i~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~g-~~~~~~~~-- 128 (535)
|+|++|+++... .+++|+|+||+|++|++.. .+.++||++|++|+|||||+|+|+.... .+ ...+++..
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~ 77 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRD 77 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhcc
Confidence 578999997643 5789999999999998743 2468999999999999999999997651 11 11222211
Q ss_pred --------------------HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee----------e
Q 009410 129 --------------------SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI----------T 178 (535)
Q Consensus 129 --------------------~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 178 (535)
...-.+.+-|+||++++..++.. .+..-+++.. ...++-+.+.-. .
T Consensus 78 ~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a~~p~~-a~h~h~e~~~---~p~~d~~~~~~~gnn~~~~~~~~ 153 (541)
T cd01304 78 PVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAAMPPLN-ARHTHEEMAD---TPILDKGAYPLLGNNWFVLEYLR 153 (541)
T ss_pred ccccccccccCCCccCCCchHhhhHHHhcCcceeecccCCccc-chhhhHHhcc---CccccccceEEecchHHHHHHHh
Confidence 01134567899999998766543 2222222221 122222211111 1
Q ss_pred cCC-hhhHHHHHHHHHHcCCCEEEEEeecCC------------------CCcCC-HHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 179 KWD-EVVSDEMEVMVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 179 ~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
..+ +.....+..+++..+.-++|+. ++.| ...++ .+.++.+.+.+.++|++..+|....
T Consensus 154 ~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~n 232 (541)
T cd01304 154 DGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHCN 232 (541)
T ss_pred cCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEccc
Confidence 111 1233444445545566777774 2221 12334 5667888888888998866665321
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCC-----CEEEEEcc---C--------HHHHHHHHH
Q 009410 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT-----PLYVVHVM---S--------MDAMEEIAK 302 (535)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~H~~---~--------~~~~~~~~~ 302 (535)
+ .|..+ ..+...+.+++++.... .+|++|+. + ....+.+..
T Consensus 233 n-----------lg~pg------------n~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~i~~ 289 (541)
T cd01304 233 N-----------LGVPG------------NYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERIAD 289 (541)
T ss_pred c-----------CCCCC------------cHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHHHHH
Confidence 1 01111 12233444555444443 37777774 1 123355666
Q ss_pred HHHcCCcEEeccccceE----eeCc--------cc-------ccCcCccccce---eEEcCCCCCcccHHH----HHHHH
Q 009410 303 ARKAGQRVIGEPVVSGL----VLDD--------SW-------LWHSDFVTAAK---YVMSPPIRASGHNKA----LQAAL 356 (535)
Q Consensus 303 ~~~~g~~v~~~~~~~~~----~~~~--------~~-------~~~~~~~~~~~---~~~~p~~r~~~~~~~----~~~~l 356 (535)
+...+-.|+.+.....+ -+.. .. ..+.+...|++ +...+......-+-+ +..++
T Consensus 290 ~~n~~~~it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~Gvvp~~y~~k~~v~~lqwaiglEl~ll~ 369 (541)
T cd01304 290 YVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVVPFIYSPKNPVNALQWAIGLELFLLI 369 (541)
T ss_pred HHHcCCCEEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCceEEeEecCCCCchHHHHHHHHHHHHHh
Confidence 66667666665543311 0110 00 00011111211 111111111111112 22455
Q ss_pred hcCCeEEEeCCCCCCChhhhhcCCCCcccCcchH------HHHHHHH--HHHHH--------hcCCCCHHHHHHHHhHHH
Q 009410 357 ATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI------EERMHLV--WDTMV--------ESGQISVTDYVRLTSTEC 420 (535)
Q Consensus 357 ~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~------~~~l~~~--~~~~~--------~~~~ls~~eal~~~T~~~ 420 (535)
+.-.++.++|||+.. .||...|.-+ ..+...+ +.+.+ -...+|++++++++|.||
T Consensus 370 ~dp~~~~~tTDhPn~---------gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nP 440 (541)
T cd01304 370 DDPWKVILTTDHPNG---------GPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGP 440 (541)
T ss_pred CCcceEEeecCCCCC---------CCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHH
Confidence 666799999997542 3555544400 1111111 00000 023479999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceE
Q 009410 421 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKY 500 (535)
Q Consensus 421 A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~ 500 (535)
|++||++ +.|+|++|+.|||+|+|.++. .+.++++.+. ....++|.+||++|++|+++|+++..+ .|+.
T Consensus 441 AKiLGL~-~kG~L~~G~~ADLvIfD~n~~-~v~~~dl~s~--------~~~~gkV~~Tiv~GkvVv~dGeiv~~~-~G~~ 509 (541)
T cd01304 441 AKLLGLS-DKGHLGVGADADIAIYDDDPD-QVDPSDYEKV--------EKAFSRAAYVLKDGEIVVKDGEVVAEP-WGRT 509 (541)
T ss_pred HHHhCCC-CCCccCCCCcCCEEEEeCCcC-ccCchhhcCc--------eeecCcEEEEEECCEEEEECCEEccCC-CCcE
Confidence 9999995 579999999999999998876 5554433322 234568999999999999999998754 6777
Q ss_pred eecCC
Q 009410 501 IEMRP 505 (535)
Q Consensus 501 ~~~~~ 505 (535)
+.-.+
T Consensus 510 l~~~~ 514 (541)
T cd01304 510 YWVDV 514 (541)
T ss_pred EEEec
Confidence 76543
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=236.70 Aligned_cols=352 Identities=19% Similarity=0.183 Sum_probs=195.6
Q ss_pred EEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCC-----CCchhhhH
Q 009410 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETIDDFF 128 (535)
Q Consensus 55 ~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g-----~~~~~~~~ 128 (535)
++|+|++|+++... .+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|......- ..+.+.+.
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~ 81 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLE 81 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCCCCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHH
Confidence 67999999998865 4679999999999998754433456899999999999999999997544211 12456677
Q ss_pred HHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeec
Q 009410 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (535)
...+.++++|||+++++...... ...+.++...+.. ......+++|...+..+.+ ..|+..-..
T Consensus 82 ~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~----------~~Gah~~~~---- 147 (382)
T PRK11170 82 IMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLV----------KKGTHNPEF---- 147 (382)
T ss_pred HHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcc----------cCCCCCHHH----
Confidence 77777899999999987654433 4455555554432 2234567777665554421 111111000
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCE
Q 009410 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (535)
Q Consensus 207 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (535)
...++.+.++.+.+.+ ..+++..=+++... .+.++.+.+.|+....+|.... +++..++++. |..
T Consensus 148 --~~~p~~~~~~~~~~~~--~~i~~iTlAPE~~~-~~~i~~l~~~gi~vs~GHs~A~-----~~~~~~a~~~----Ga~- 212 (382)
T PRK11170 148 --IRKPDAEMVDFLCENA--DVITKVTLAPEMVD-AEVIRKLVEAGIVVSAGHSNAT-----YEEAKAGFRA----GIT- 212 (382)
T ss_pred --hcCcCHHHHHHHHhcc--CCEEEEEECCCCCc-HHHHHHHHHCCcEEEeeCCcCC-----HHHHHHHHHc----CCC-
Confidence 0112333444444332 12233332322221 1333344444433333333211 1222222222 222
Q ss_pred EEEEccCHHH------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhc-C
Q 009410 287 YVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G 359 (535)
Q Consensus 287 ~~~H~~~~~~------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~-G 359 (535)
+++|+.+.-. .-.+..+-.. -.+.++...+..++.+. .++-+.+. |
T Consensus 213 ~~THlfNaM~~~~hR~pg~vga~l~~-~~~~~elI~Dg~Hv~p~--------------------------~~~~~~~~k~ 265 (382)
T PRK11170 213 FATHLYNAMPYITGREPGLVGAILDE-PDVYCGIIADGLHVDYA--------------------------NIRNAKRLKG 265 (382)
T ss_pred EEeeccccCCcccCCCcchhhHhhcC-CCcEEEEEcCcccCCHH--------------------------HHHHHHHhcC
Confidence 2444433110 0000000000 01233333333333222 22222221 3
Q ss_pred CeEEEeCCCCCCChh---hhhcCC-------CC-cccCcc--hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 360 ILQLVGTDHCAFNST---QKAFGI-------DD-FRKIPN--GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 360 v~~~lgtD~~~~~~~---~~~~~~-------~~-~~~~~~--g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
-++.+-||....... ...++. +. +..-.. |-...+...++.++...++++++|++++|.|||+.+|+
T Consensus 266 ~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl 345 (382)
T PRK11170 266 DKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGV 345 (382)
T ss_pred CcEEEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 456666664321110 000000 00 000001 44556777787888888899999999999999999999
Q ss_pred CCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 427 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 427 ~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
++++|+|++|+.|||+|+|.+ .+++.||++|++++.
T Consensus 346 ~~~~G~i~~G~~ADlvvld~~-------------------------~~v~~v~~~G~~~~~ 381 (382)
T PRK11170 346 DKRLGSIEAGKVANLTAFTRD-------------------------FKITKTIVNGNEVVT 381 (382)
T ss_pred CCCccccCCCCcCCEEEECCC-------------------------CcEEEEEECCEEeec
Confidence 766899999999999999954 378999999999874
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=242.91 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=121.9
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
..++++.+.++++.|++.|+++.+|+.++..+...++.+.. +.......+.+..+.
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~------------------------~~~~~g~~~~r~~i~ 345 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEA------------------------ALKDNPRADHRHRIE 345 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHH------------------------HHHhcCCCCCCceee
Confidence 35689999999999999999999999887665555543321 111111124567899
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
|+...+. ++++++++.|+.++.+|.. .++..+........ ...... ..+++.++++|+++++|||+.
T Consensus 346 H~~~~~~-~~~~~l~~~gv~~~~~P~~--~~~~~~~~~~~~lg-~~~~~~---------~~p~~~~~~~Gv~v~lGSD~~ 412 (479)
T cd01300 346 HAQLVSP-DDIPRFAKLGVIASVQPNH--LYSDGDAAEDRRLG-EERAKR---------SYPFRSLLDAGVPVALGSDAP 412 (479)
T ss_pred ecccCCH-HHHHHHHHcCCceEeCccc--ccCchHHHHHhccc-HHHHhc---------CchHHHHHHCCCeeeccCCCC
Confidence 9998886 8999999999888776653 22222111100000 000111 134889999999999999975
Q ss_pred CCChhhhhcCCCCcccCcchHHHHHHHHHHHH----HhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEE
Q 009410 370 AFNSTQKAFGIDDFRKIPNGIEERMHLVWDTM----VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~----~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvv 443 (535)
....+ +|..+ ...+....... ....++|++++|+++|.|||+++|+++++|+|++||.|||||
T Consensus 413 ~~~~~-------p~~~~----~~av~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 413 VAPPD-------PLLGI----WAAVTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred CCCCC-------HHHHH----HHHheeeCCCCCCCCCccccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 43211 22211 11110000000 023569999999999999999999988999999999999986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=225.99 Aligned_cols=396 Identities=22% Similarity=0.262 Sum_probs=219.8
Q ss_pred EEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc--cCCC-CchhhhH
Q 009410 55 ILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMGS-ETIDDFF 128 (535)
Q Consensus 55 ~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~--~~g~-~~~~~~~ 128 (535)
++|+|++|+++... +.++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+..+ +.+. ..++.+.
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE~~~ 79 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPEDHR 79 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHHHHh
Confidence 68999999998643 35899999999999986533 246899999999999999999999874 1111 1222222
Q ss_pred ----------------------HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee---------
Q 009410 129 ----------------------SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI--------- 177 (535)
Q Consensus 129 ----------------------~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 177 (535)
.....+++.|+||++|+..++.. .+..-+++.. ...++-+.+.-.
T Consensus 80 ~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~~p~~-arh~h~e~~~---~p~~d~~~~~~~gnn~~~~~~ 155 (556)
T TIGR03121 80 RDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAVPPLN-ARHTHEEFAD---TPILDKGGYTLLGNNWFLLEY 155 (556)
T ss_pred hcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCCCccc-hhhhHHHhcc---CccccccceEEecchHHHHHH
Confidence 12245678999999999776553 2222222221 122222211111
Q ss_pred -ecCC-hhhHHHHHHHHHHcCCCEEEEEeecCC------------------CCcCC-HHHHHHHHHHHHhcCCe--EEEE
Q 009410 178 -TKWD-EVVSDEMEVMVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGAL--AMVH 234 (535)
Q Consensus 178 -~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~a~~~g~~--v~~H 234 (535)
...+ +.....+..+++..+.-++|+. ++.| .+.++ .+.++.+.++..+.|+| +++|
T Consensus 156 ~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lph~~h~H 234 (556)
T TIGR03121 156 LKDGEPEKAAAYVAWLLKATKGYGIKVV-NPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLPHSIHVH 234 (556)
T ss_pred HhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 1111 2233444445545566777774 2221 12334 56677777888888987 5666
Q ss_pred cCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCC------EEEEEccC-----------HHHH
Q 009410 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMS-----------MDAM 297 (535)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~H~~~-----------~~~~ 297 (535)
+++. |..+ - .+...+.++..+ |.+ +|++|... ....
T Consensus 235 ~nnl-------------g~pg----------n--~~~t~~t~~~~~--g~~~~~~~~~h~tH~qf~syg~~~~~~f~s~a 287 (556)
T TIGR03121 235 CNNL-------------GVPG----------N--YETTLDTLDAAE--GVKPNRNQVLHLTHVQFHSYGGTSWRDFESGA 287 (556)
T ss_pred cCCC-------------CCCC----------c--hHHHHHHHHHhc--CCCCCccceeEeeeeeeeccCCCCCCCcchhH
Confidence 6543 2211 0 011111222211 333 67777631 1112
Q ss_pred HHHHHHHHcCCcEEeccccceE----eeCccc---------------ccCcCccccce---eEEcCCCCCcccHHHHH--
Q 009410 298 EEIAKARKAGQRVIGEPVVSGL----VLDDSW---------------LWHSDFVTAAK---YVMSPPIRASGHNKALQ-- 353 (535)
Q Consensus 298 ~~~~~~~~~g~~v~~~~~~~~~----~~~~~~---------------~~~~~~~~~~~---~~~~p~~r~~~~~~~~~-- 353 (535)
+.+..+-..+-.++.....-.+ .++.+. ..+.+...+++ +...+......-+-++-
T Consensus 288 ~~~a~~vn~~~~~t~d~Gqv~fg~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~gvvp~~y~~~~~v~~~qwaigle 367 (556)
T TIGR03121 288 EKIADYVNANPNVTIDVGQVTFGETTTMTADGPMEYDLHKLTGLKWANKDVELETGSGVVPFKYSPKNPVHALQWAIGLE 367 (556)
T ss_pred HHHHHHHhcCCCEEEEeCceecCCceEEeccchhhhhcccCCCCceeeeeeecccCCceEEeeecCCCcchHHHHHHhhH
Confidence 3344444444444433221100 111100 01111111211 11111111122222333
Q ss_pred --HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc------hHHHHHHHH--HHHHH--------hcCCCCHHHHHHH
Q 009410 354 --AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN------GIEERMHLV--WDTMV--------ESGQISVTDYVRL 415 (535)
Q Consensus 354 --~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~------g~~~~l~~~--~~~~~--------~~~~ls~~eal~~ 415 (535)
-+.++-.++.+.|||+.. +||...|. +-..+-..+ +.+.+ -...+|++|++++
T Consensus 368 l~Ll~~dp~~~~~ttDhPng---------gpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~EI~~m 438 (556)
T TIGR03121 368 LFLLIKDPWRVFLTTDHPNG---------GPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLYEIAIM 438 (556)
T ss_pred HHHhcCCcceeEEeccCCCC---------CcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHHHHHHH
Confidence 344567899999997542 36666665 111111111 00111 1445999999999
Q ss_pred HhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 416 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 416 ~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
+|.+||++||+. ++|+|++|+.|||+|+|.++....+ ....+. .....+++||++|++|+++|+++..+
T Consensus 439 tTanPAkaLGL~-dkG~L~pGa~ADIaI~D~~~~~~~~--------~~~~v~--~~~~~v~~Tik~G~vV~~dGei~~~~ 507 (556)
T TIGR03121 439 TRAGPAKLLGLT-DRGHLGVGADADIAVYDINPDDVDT--------DYADVE--KAFSTALYVFKDGEIVVKDGEIVETP 507 (556)
T ss_pred HHHHHHHHhCCC-CCCCcCCCCcCCEEEEeCcccccCC--------chHHHh--hccCCccEEEECCEEEEECCEEccCC
Confidence 999999999995 5799999999999999976543211 011111 11257899999999999999999865
Q ss_pred CCceEeecCC
Q 009410 496 GSGKYIEMRP 505 (535)
Q Consensus 496 ~~~~~~~~~~ 505 (535)
.|+.+.-.+
T Consensus 508 -~G~~~~~~~ 516 (556)
T TIGR03121 508 -WGRTYWVDA 516 (556)
T ss_pred -CCcEEEEec
Confidence 677776443
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=225.70 Aligned_cols=295 Identities=18% Similarity=0.179 Sum_probs=184.4
Q ss_pred eEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC
Q 009410 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151 (535)
Q Consensus 72 ~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~ 151 (535)
+|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+ +....+ ...+.++++||||++|+......
T Consensus 1 ~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~---~~~~~a~~~GvTtvvd~~~~~~~ 75 (338)
T cd01307 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHVYQG--GTRYGD---RPDMIGVKSGVTTVVDAGSAGAD 75 (338)
T ss_pred CEEEECCEEEEccCCCCCCCCCeEEECCCCEEecCeEEeeecCCCC--CcccCC---CHhHHHHcCceeEEEeCCCCCCC
Confidence 5899999999999865433457899999999999999999999876 432222 35677899999999999755544
Q ss_pred ChHHHHHHHHHHhcc---cccccceeeeeecCC-----hhhHHHHHHHHH--HcCCCEEEEEeecCCCCcCCHHHHHHHH
Q 009410 152 SLTAGFEAYEKKAKN---SCMDYGFHMAITKWD-----EVVSDEMEVMVK--EKGINSFKFFMAYKGSFMINDELLIEGF 221 (535)
Q Consensus 152 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~g~~~ik~~~~~~~~~~~~~~~l~~~~ 221 (535)
......+...+.... .+.+++++....... ....+.+.+..+ ..|+.++|.++...+........+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~~~ 155 (338)
T cd01307 76 NIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAK 155 (338)
T ss_pred CHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHHHH
Confidence 444445555333322 444554443221110 111223333222 3578888988765443322344488999
Q ss_pred HHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHH----
Q 009410 222 KRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---- 296 (535)
Q Consensus 222 ~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~---- 296 (535)
+.+++.|+++.+|++.... ..+.. .+.+ .+ ..+.|+.....
T Consensus 156 ~~a~~~~~pi~vH~~~~~~~~~~~~-------------------------------~~l~-~g--~~~~H~~~g~~~~~~ 201 (338)
T cd01307 156 KIAKEADLPLMVHIGSPPPILDEVV-------------------------------PLLR-RG--DVLTHCFNGKPNGIV 201 (338)
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHH-------------------------------HHhc-CC--CEEEeccCCCCCCCC
Confidence 9999999999999965432 11111 1111 12 24667665431
Q ss_pred ------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC-eEEEeCCCC
Q 009410 297 ------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI-LQLVGTDHC 369 (535)
Q Consensus 297 ------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv-~~~lgtD~~ 369 (535)
.+.+..+.+.|+.+..... ... ........+++.|+ +..++||..
T Consensus 202 ~~~~~~~~~~~~~~~~G~~~d~~~G-------------------~~~---------~~~~~~~~l~~~G~~~~~lstD~~ 253 (338)
T cd01307 202 DEEGEVLPLVRRARERGVIFDVGHG-------------------TAS---------FSFRVARAAIAAGLLPDTISSDIH 253 (338)
T ss_pred CCCCcHHHHHHHHHhCCEEEEeCCC-------------------CCc---------hhHHHHHHHHHCCCCCeeecCCcc
Confidence 1455666777755432110 000 00123556778887 568999963
Q ss_pred CCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCC
Q 009410 370 AFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~ 448 (535)
..... +.| ...+...++.+. ..+++++++++++|.|||++|++ +++|+|++|+.|||++++.+.
T Consensus 254 ~~~~~----------~~p---~~~l~~~l~~l~-~~gi~~ee~~~~~T~NpA~~lgl-~~~G~l~~G~~ad~~v~~~~~ 317 (338)
T cd01307 254 GRNRT----------NGP---VYALATTLSKLL-ALGMPLEEVIEAVTANPARMLGL-AEIGTLAVGYDADLTVFDLKD 317 (338)
T ss_pred ccCCC----------CCc---cccHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCC-CCCCccCCCCcCCEEEEeCCC
Confidence 21110 001 112333444442 34799999999999999999999 679999999999999999653
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=206.14 Aligned_cols=311 Identities=18% Similarity=0.249 Sum_probs=197.9
Q ss_pred CcccEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhH
Q 009410 51 SSSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~ 128 (535)
|..+++|+|++++++... +..+|.|.||||++++ +.+.|.+.++||++|.+|.|||||.|+|.+.. +......-
T Consensus 2 mqfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa~tq~Ida~Gc~VspG~iDlHvHvy~g--gt~~~v~p- 77 (386)
T COG3964 2 MQFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHVHVYYG--GTEGGVRP- 77 (386)
T ss_pred CccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCChhheEEccCccEeccCeeeeeeEEecC--CCccCcCH-
Confidence 457899999999987743 5789999999999999 66777779999999999999999999999876 32211111
Q ss_pred HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcc---cccccceeeeeecCCh------hhHHHHHHHHHHc--CC
Q 009410 129 SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMAITKWDE------VVSDEMEVMVKEK--GI 197 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--g~ 197 (535)
-....++||||++|.+..+..+.....+...+.... .++++++.. ....++ =..+++....++. -.
T Consensus 78 --d~~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~G-l~a~nE~~d~~nid~d~i~aa~reh~d~i 154 (386)
T COG3964 78 --DMYGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPG-LTASNELYDPDNIDEDKIHAAFREHRDVI 154 (386)
T ss_pred --HHccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCcc-eeeehhhCChhhCCHHHHHHHHHhCcCcE
Confidence 244678999999999776665555555555544432 344433222 111111 0133444444332 23
Q ss_pred CEEEEEeecC--CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCChhhHHHHHHH
Q 009410 198 NSFKFFMAYK--GSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (535)
Q Consensus 198 ~~ik~~~~~~--~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 274 (535)
.++|+-++.. |.+.++ -+...++.|++.++|+.+|..++.. ..+.+..+.
T Consensus 155 vGlKvR~s~~~~g~~Git--Pl~la~~ia~~~klPlmvHigePp~~~dEvlerL~------------------------- 207 (386)
T COG3964 155 VGLKVRVSTEDIGEYGIT--PLTLALRIANDLKLPLMVHIGEPPVLMDEVLERLR------------------------- 207 (386)
T ss_pred EEEEEEeeeccccccCCc--hHHHHHHHHhhcCCceEEecCCCCccHHHHHHhcc-------------------------
Confidence 3455544432 333334 3666777888999999999966543 233333221
Q ss_pred HHHHHHhcCCCEEEEEccCH----------HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCC
Q 009410 275 AIRLAEFVNTPLYVVHVMSM----------DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (535)
Q Consensus 275 ~~~~~~~~~~~~~~~H~~~~----------~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (535)
.-=+++||... .-....++++.+|+..-..-.. ..
T Consensus 208 ---------~GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~------------------as-------- 252 (386)
T COG3964 208 ---------RGDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGR------------------AS-------- 252 (386)
T ss_pred ---------CCceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCc------------------ce--------
Confidence 11145666432 1124455666677554332111 01
Q ss_pred CcccHHHHHHHHhcC-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHH
Q 009410 345 ASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARI 423 (535)
Q Consensus 345 ~~~~~~~~~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 423 (535)
....-.+.++..| .+..|+||-...+.-. |-...+...+.+++.- |+++.++++++|.|||..
T Consensus 253 --fsf~vAr~aia~GllP~~ISSDlh~~~~~n-------------~Pv~dla~~mSKllal-gmpl~~Vi~avT~npA~~ 316 (386)
T COG3964 253 --FSFNVARRAIANGLLPDIISSDLHTITKLN-------------GPVYDLAWIMSKLLAL-GMPLTDVINAVTHNPAVL 316 (386)
T ss_pred --eeHHHHHHHHhcCCCcceeeccceeeeecC-------------chHHHHHHHHHHHHHc-CCcHHHHHHHHhcCHHHH
Confidence 1113356677777 4688999943332111 1123455556566655 599999999999999999
Q ss_pred cCCCCCCccccCCCCccEEEEcCC
Q 009410 424 FNVYPRKGAILVGSDADIIIFNPN 447 (535)
Q Consensus 424 lgl~~~~GsI~~Gk~ADlvvld~~ 447 (535)
+++ +..|+|+||..||++|++..
T Consensus 317 i~l-~~~gtLa~G~~aD~tvf~lk 339 (386)
T COG3964 317 IGL-AEIGTLAPGAFADITVFKLK 339 (386)
T ss_pred hCc-cccCccCCCcccceEEEEec
Confidence 999 58999999999999999854
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=205.48 Aligned_cols=344 Identities=18% Similarity=0.222 Sum_probs=197.9
Q ss_pred EEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC----CCCc--hhhhHH
Q 009410 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----GSET--IDDFFS 129 (535)
Q Consensus 56 vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~----g~~~--~~~~~~ 129 (535)
+|.|++|+..+.+-+++|+|+||+|..|.+.... ...-||++|.+++|||||+|+--...++ |-.+ ...+..
T Consensus 2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~--~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~a 79 (377)
T COG3454 2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP--LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILA 79 (377)
T ss_pred ccccceEEeecceeeeeEEEecceEeeeccccCc--ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHH
Confidence 6889999998888889999999999999876542 2667999999999999999995443321 1111 122333
Q ss_pred HHHHHHhCCcEEEeccccCCCC--------ChHHHHHHHHHHh--cccccccceeeeeecCChhhHHHHHHHHHHcCCCE
Q 009410 130 GQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (535)
.-...+.+||||++|....++. ...+.++...... .+...+..+|....-...+..+.+.++........
T Consensus 80 hD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~L 159 (377)
T COG3454 80 HDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKL 159 (377)
T ss_pred hhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeE
Confidence 3455689999999987442221 4455555555532 33455666676666666667777877775566666
Q ss_pred EEEEeecCCC----------------CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccC
Q 009410 200 FKFFMAYKGS----------------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (535)
Q Consensus 200 ik~~~~~~~~----------------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (535)
+.++=..+|. ..++++.+.+.++.-...... ..........+.+...|+.-.. |
T Consensus 160 iSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~-----y~~~~r~~i~~~c~~rgI~lAS-H---- 229 (377)
T COG3454 160 ISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSAR-----YSDPNRQAIAALCRERGIALAS-H---- 229 (377)
T ss_pred EEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-----cccchHHHHHHHHHHcCCceec-C----
Confidence 6654322222 223333333222221110000 0000001111111111221100 0
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCC
Q 009410 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (535)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (535)
.++..+-++.....| +.+.-+. ...+..+..++.|+.|.... | |.-.|.
T Consensus 230 -----DDaT~~hV~es~~~G--v~iAEFP--tT~eAA~asr~~Gm~VlMGA-P-------------NivrGg-------- 278 (377)
T COG3454 230 -----DDATVEHVAESHGLG--VAIAEFP--TTVEAAKASRELGMQVLMGA-P-------------NIVRGG-------- 278 (377)
T ss_pred -----CcCcHHHHHHHHhcC--eeEEeCc--cHHHHHHHHHHhCchhhcCC-C-------------ceeccC--------
Confidence 001111111112222 2233332 22345555566666554321 1 111111
Q ss_pred CCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHH
Q 009410 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARI 423 (535)
Q Consensus 344 r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 423 (535)
+.....+..++.+.|+...++||+.|.+.- ...+.-.-....+++.||+++.|.|||++
T Consensus 279 -SHsGNvsA~ela~~glLDiLsSDY~P~SLl--------------------~A~F~La~~~~~~~lpqAvalvt~nPA~a 337 (377)
T COG3454 279 -SHSGNVSARELAQHGLLDILSSDYVPASLL--------------------HAAFRLADLGSNISLPQAVALVTKNPARA 337 (377)
T ss_pred -CcccchhHHHHHhCCceeeecccCCcHHHH--------------------HHHHHHhhhhcccCHHHHHHHhccCHHHh
Confidence 112235578899999999999998774221 12221111233468999999999999999
Q ss_pred cCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 424 FNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 424 lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
+|+. ++|+|++|++||||.+..+.. ...|+.||+.|+.|+
T Consensus 338 lgl~-DRG~Ia~GlrADlv~v~~~~~----------------------vp~ir~vwr~G~rv~ 377 (377)
T COG3454 338 LGLT-DRGRIAPGLRADLVRVRRDGG----------------------VPVIRTVWRAGKRVA 377 (377)
T ss_pred cCCC-cccccccccccceEEEecCCC----------------------CceeeeeeecceecC
Confidence 9995 899999999999998875432 137999999999874
|
|
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=220.34 Aligned_cols=324 Identities=14% Similarity=0.126 Sum_probs=234.7
Q ss_pred EEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-cc--ccccceeeee
Q 009410 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NS--CMDYGFHMAI 177 (535)
Q Consensus 102 ~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 177 (535)
+.+|-=-|+|+|+.+. .+.....-+...|||++++|....+. .....++....... .. .+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v 73 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG--------AMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL 73 (341)
T ss_pred ceecCccceeeeccCc--------hHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence 3567778999999876 22233344567789999999654433 23445555444433 33 3578877777
Q ss_pred ecCChhhHHHHHHHHHHcCCCEEEEEeecCC----CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCC
Q 009410 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~ 253 (535)
........+++.++.+..|+.++|+|+...+ ....++..+.++++.+++.|+++.+|+++.......
T Consensus 74 ~~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~--------- 144 (341)
T TIGR00856 74 YLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI--------- 144 (341)
T ss_pred ECCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc---------
Confidence 5444435677877764459999999865321 112355889999999999999999999875210000
Q ss_pred CCcccccccCChhhHHHHHH-HHHHHHH-hcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCc
Q 009410 254 TGPEGHALSRPPLLEGEATT-RAIRLAE-FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 331 (535)
...+...+. .+..++. ..+.++++.|.++...++.+..++. .|++++++||++++.+.+....
T Consensus 145 -----------~~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~~---~vt~E~~ph~L~l~~~~~~~~~- 209 (341)
T TIGR00856 145 -----------FDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNN---RLAATITPQHLMFTRNDLLGGG- 209 (341)
T ss_pred -----------ccchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcCC---CEEEEEcHHHHhccHHHHhccC-
Confidence 000122233 3334554 4489999999999988777766532 3999999999999998764311
Q ss_pred cccceeEEcCCCCCcccHHHHHHHHhcCCeE-EEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCC
Q 009410 332 VTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQI 407 (535)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~l 407 (535)
.+..++++||+|...+++++|+.+.+|... .++|||+|++...+.. + .+|+ |++..++.++. ..+. ++
T Consensus 210 -~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~---~--~~~~G~~g~e~~l~~~~~-~~~~-~~ 281 (341)
T TIGR00856 210 -VNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES---S--CGCAGCFSAPTALPSYAE-VFEE-MN 281 (341)
T ss_pred -CCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC---C--CCCCCcccHHHHHHHHHH-HHhc-CC
Confidence 247899999999999999999999999999 6999999998777642 1 2443 88988888774 3444 79
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCC-CeeEeeEE
Q 009410 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE-GRRVKGKV 475 (535)
Q Consensus 408 s~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~-~~~~~~~v 475 (535)
+++++++..+.|||++||+ ++ | .|||+|+ +..|.++++++.++..|+||+ |..+.++|
T Consensus 282 ~l~~~v~~~s~nPAk~~gl-~~-~------dAdi~~~--~~~~~i~~~~~~s~~~~sp~~~~~~~~~~v 340 (341)
T TIGR00856 282 ALENLEAFCSDNGPQFYGL-PV-N------STKIELV--KKEQQIPESIALTDDTLVPFRAGETLSWSV 340 (341)
T ss_pred CHHHHHHHHhHhHHHHhCC-CC-C------CceEEEE--eccEEeCchhccCCCCcccccCCcccceee
Confidence 9999999999999999999 33 4 8999999 589999999999999999994 55444444
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=219.71 Aligned_cols=324 Identities=15% Similarity=0.160 Sum_probs=225.1
Q ss_pred EEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cc--cccccceeeee
Q 009410 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KN--SCMDYGFHMAI 177 (535)
Q Consensus 102 ~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 177 (535)
+-+|=-||+|+|+... .+..++. ...+.++|++++|....+. .....++...... .. ..+++.++.++
T Consensus 5 ~~~~~~~d~h~hl~~~----~~~~~~~----~~~~~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i 76 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG----AMLKAVV----PYTARQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTL 76 (345)
T ss_pred EEecCcceEEEecCCc----hHHHHHH----HHHHHhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 5578889999999853 2222333 3344679999999643222 2344444444433 22 22455555555
Q ss_pred ecCChhhHHHHHHHHHHcC-CCEEEEEeecCC----CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009410 178 TKWDEVVSDEMEVMVKEKG-INSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g-~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (535)
.....+..+++.++. +.| ..++|+|+.+.+ ....+++.+.++++.+.+.|+++.+|+++........
T Consensus 77 ~~~~~~~~~El~~~~-~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~------- 148 (345)
T PRK05451 77 YLTDNTDPDELERAK-ASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIF------- 148 (345)
T ss_pred EeCCCCCHHHHHHHH-HCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccccc-------
Confidence 444333457777776 678 459999976421 1122678899999999999999999998743200000
Q ss_pred CCCcccccccCChhhHHHHHHHH-HHHHHhc-CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcC
Q 009410 253 ITGPEGHALSRPPLLEGEATTRA-IRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (535)
..+...+.+. .+++..+ +.++++.|+++.+.++.+.. .+.+|++++++||++++.+.+...+
T Consensus 149 -------------~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~---a~~~it~Et~ph~L~l~~~~~~~~~ 212 (345)
T PRK05451 149 -------------DREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVRE---ANDNLAATITPHHLLINRNDMLVGG 212 (345)
T ss_pred -------------cchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHh---cCCCEEEEecHHHHhcCHHHHhCCC
Confidence 0012223343 4477666 99999999999877665544 3678999999999999988764322
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCeE-EEeCCCCCCChhhhhc--CCCCcccCcchHHHHHHHHHHHHHhcCCC
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAF--GIDDFRKIPNGIEERMHLVWDTMVESGQI 407 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~-~lgtD~~~~~~~~~~~--~~~~~~~~~~g~~~~l~~~~~~~~~~~~l 407 (535)
.+..++++||+|...+++++|+.+..|... +++|||+|+....+.. +...++.++. .++.++. ++... .
T Consensus 213 --~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~----g~~~~~~-~~~~~-~ 284 (345)
T PRK05451 213 --IRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPA----ALELYAE-VFEEA-G 284 (345)
T ss_pred --cCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHH----HHHHHHH-HHHcC-C
Confidence 246789999999999999999999999999 8999999998777642 1112222222 2333332 23344 4
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCC-CCeeEeeEE
Q 009410 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY-EGRRVKGKV 475 (535)
Q Consensus 408 s~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~-~~~~~~~~v 475 (535)
+++++++..+.|||++||+..++|+|.+| +..|.++++.+.++..|+|| .|..+.++|
T Consensus 285 ~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~~~~s~~~~sp~~~~~~~~~~~ 343 (345)
T PRK05451 285 ALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPESIPFGDETVVPFRAGETLRWSV 343 (345)
T ss_pred CHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcccccCCCceeeecCCceeeeEe
Confidence 99999999999999999998889999877 68899999999999999999 455555555
|
|
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=214.51 Aligned_cols=334 Identities=20% Similarity=0.207 Sum_probs=182.0
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCC-CEEeecccccccccccccCCCCchhhhHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G-~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~ 132 (535)
+++|+|++|+++. ..+|+|+||||++|++.... .+.++||++| ++|+|||||+|+|+... +....++. ..
T Consensus 2 ~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~-~~~~~iD~~g~~~l~PG~ID~H~H~~~~--~~~~~~~~---~~ 72 (365)
T TIGR03583 2 DLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITG-SAKQTIDLEGETYVSAGWIDDHTHCFPK--SALYYDEP---DE 72 (365)
T ss_pred cEEEECcEEecCC---eeEEEEECCEEEEecCCCCC-CCCeEEECCCCeEEecCEEEeeeccCCC--cccccCCH---hH
Confidence 5899999999853 45999999999999875432 2468999999 99999999999999754 22233333 23
Q ss_pred HHHhCCcEEEeccccCCCCChHHHHHHHHHHhccc--ccccceeeeeec-C----ChhhHHHHHHHHHH-c-CCCEEEEE
Q 009410 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS--CMDYGFHMAITK-W----DEVVSDEMEVMVKE-K-GINSFKFF 203 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~----~~~~~~~~~~~~~~-~-g~~~ik~~ 203 (535)
.++++|||+++++............+.......+. .++.......+. . .....+++.++.+. . +..++|.+
T Consensus 73 ~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~ 152 (365)
T TIGR03583 73 IGVKTGVTTVVDAGSTGADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKAR 152 (365)
T ss_pred hhhcCceeEEEeCCCCCCCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEe
Confidence 46889999999975433333333333332222121 111111111111 0 11233444444422 2 24455666
Q ss_pred eecC--CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHH
Q 009410 204 MAYK--GSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280 (535)
Q Consensus 204 ~~~~--~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (535)
++.. +...+++..+.+.+..+ +.++++.+|+..... ..+..+. ...
T Consensus 153 ~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~-~~~----------------------------- 201 (365)
T TIGR03583 153 MSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPELDEILAL-MEK----------------------------- 201 (365)
T ss_pred ecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHH-hcC-----------------------------
Confidence 6632 11223355555555554 789999999976532 2222211 111
Q ss_pred hcCCCEEEEEccCHHH----------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHH
Q 009410 281 FVNTPLYVVHVMSMDA----------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350 (535)
Q Consensus 281 ~~~~~~~~~H~~~~~~----------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 350 (535)
+ . .+.|+.+... .+.+....+.|+.+...-... + ....
T Consensus 202 --g-~-~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg~~------------------------~----~~~~ 249 (365)
T TIGR03583 202 --G-D-VLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHGTA------------------------S----FSFH 249 (365)
T ss_pred --C-C-eeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCCCC------------------------C----chHH
Confidence 1 1 2455543221 123333444454333210000 0 0001
Q ss_pred HHHHHHhcCC-eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 351 ALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 351 ~~~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
....+...++ .++.++|. +. . +..+|....+...++.++. .|++++++++++|.|||++||++ +
T Consensus 250 ~~~~~~~~~~~~~td~~d~-~~--~----------~~~~gp~~~l~~~~~~~~~-~g~~~~ea~~~~t~npa~~~gl~-~ 314 (365)
T TIGR03583 250 VAEKAKRAGIFPDTISTDI-YI--R----------NRINGPVYSLATVMSKFLA-LGYSLEEVIEKVTKNAAEILKLT-Q 314 (365)
T ss_pred HHHHHHhCCCCCccccccc-cc--C----------CCccCccccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCC-C
Confidence 1222333332 23333442 10 0 0000112235555555554 47999999999999999999995 4
Q ss_pred CccccCCCCccEEEEcCCCc-eeeecCCccccCCCCCCCCeeEee----EEEEEEECCEEE
Q 009410 430 KGAILVGSDADIIIFNPNSS-FEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVV 485 (535)
Q Consensus 430 ~GsI~~Gk~ADlvvld~~~~-~~i~~~~~~~~~~~~p~~~~~~~~----~v~~v~~~Gr~V 485 (535)
.|+|++|+.|||+++|.++. ..+. -.+|..+.. .++.|+++|++.
T Consensus 315 ~g~i~~g~~ad~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 315 KGRLQEGYDADLTIFTVKAEPKKLT-----------DSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred CCCcCCCCcccEEEEecCCCCceee-----------cCCCCEEEeccccceEEEEECCEEe
Confidence 89999999999999997432 1111 122333232 467899999864
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=217.30 Aligned_cols=282 Identities=21% Similarity=0.254 Sum_probs=182.4
Q ss_pred ecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccC-CCCChHHHHHHHHHHhcccccccceee
Q 009410 97 DATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHM 175 (535)
Q Consensus 97 D~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (535)
|++|++|+|||||+|+|+..+ + .+++. ..+.++++||||++++... .+....+.++...+...+...++.+..
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~--~-~~~~~---~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESS--M-LTPSE---FAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCC--C-CChHH---HHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 789999999999999999876 2 33333 3678899999999986422 222455666666665544444443322
Q ss_pred ee----ecC--Chh--hHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009410 176 AI----TKW--DEV--VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (535)
Q Consensus 176 ~~----~~~--~~~--~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 247 (535)
+. +.. .+. ..+++.++.+..++.+++.+++|++. ..+.+.+.+.++.|++.|+++.+|+..... ..+..
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a 151 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNA 151 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHH
Confidence 21 111 111 36677777744689999988887653 336778999999999999999999976541 22222
Q ss_pred HHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCccccc
Q 009410 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (535)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (535)
+.+.|.. ..|+....+ +.++++ +.|+.+...+...
T Consensus 152 ~l~aGi~---------------------------------~dH~~~~~e-ea~e~l-~~G~~i~i~~g~~---------- 186 (422)
T cd01295 152 YMAAGIS---------------------------------TDHEAMTGE-EALEKL-RLGMYVMLREGSI---------- 186 (422)
T ss_pred HHHcCCC---------------------------------CCcCCCcHH-HHHHHH-HCCCEEEEECccc----------
Confidence 2222221 136665554 555555 5787665432210
Q ss_pred CcCccccceeEEcCCCCCcccHHHHHHHHh--cCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcC
Q 009410 328 HSDFVTAAKYVMSPPIRASGHNKALQAALA--TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESG 405 (535)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~--~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~ 405 (535)
..+...+.+.+. .+.+++++||.... ... .. ...+....+... ..
T Consensus 187 ------------------~~~~~~~~~~l~~~~~~~i~l~TD~~~~-~~~-------~~------~g~~~~v~r~a~-~~ 233 (422)
T cd01295 187 ------------------AKNLEALLPAITEKNFRRFMFCTDDVHP-DDL-------LS------EGHLDYIVRRAI-EA 233 (422)
T ss_pred ------------------HhhHHHHHHhhhhccCCeEEEEcCCCCc-hhh-------hh------cchHHHHHHHHH-Hc
Confidence 001111222222 47899999997421 111 00 012233333333 34
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 406 QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 406 ~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
++++++|++++|.|||+++|+ +++|+|++|+.|||++++... .-+|..||++|+.|
T Consensus 234 g~s~~eal~~aT~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~~-----------------------~~~v~~v~~~G~~v 289 (422)
T cd01295 234 GIPPEDAIQMATINPAECYGL-HDLGAIAPGRIADIVILDDLE-----------------------NFNITTVLAKGIAV 289 (422)
T ss_pred CCCHHHHHHHHhHHHHHHcCC-CCCcccCCCCcCCEEEECCCC-----------------------CCceEEEEECCeEE
Confidence 699999999999999999999 778999999999999998311 12789999999999
Q ss_pred EECC
Q 009410 486 WEND 489 (535)
Q Consensus 486 ~~~~ 489 (535)
|+.-
T Consensus 290 ~~r~ 293 (422)
T cd01295 290 VERH 293 (422)
T ss_pred EEec
Confidence 9753
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=193.18 Aligned_cols=344 Identities=19% Similarity=0.248 Sum_probs=218.9
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC----------CCCceEEecCCCEEeecccccccccccccCCC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~----------~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~ 121 (535)
..|++|+|+.|+|-.++...+|-|+||||.+||+...+ ...+++|.++|++|.-|=||.|+|+-.+
T Consensus 66 ~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---- 141 (568)
T COG0804 66 ALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---- 141 (568)
T ss_pred cccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH----
Confidence 57899999999999888999999999999999974321 2357899999999999999999998755
Q ss_pred CchhhhHHHHHHHHhCCcEEEecccc-CCCC-------ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHH
Q 009410 122 ETIDDFFSGQAAALAGGTTMHIDFVI-PING-------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (535)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTtv~d~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (535)
+....++++||||++--+. |... ...-.+..+.+.....++++++..-. +......+.+.+
T Consensus 142 -------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKG---n~s~~~~L~Eqi- 210 (568)
T COG0804 142 -------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGFLGKG---NASNPAPLAEQI- 210 (568)
T ss_pred -------HHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEEeecC---CCCCchhHHHHH-
Confidence 1256789999999985432 2221 34555666666666677787775422 222234455666
Q ss_pred HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHH
Q 009410 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (535)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 273 (535)
+.|+.++|+.-++ ..++..+...+..|.++.+++.+|..+.++.....+.+
T Consensus 211 ~aGa~GlKlHEDW----G~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsGfvEdTi------------------------- 261 (568)
T COG0804 211 EAGAIGLKLHEDW----GATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTI------------------------- 261 (568)
T ss_pred hhccceeEeeccc----CCCHHHHHHHHhhhhhhceEEEEeecccccccchHhHH-------------------------
Confidence 7899999996554 46899999999999999999999986655432222111
Q ss_pred HHHHHHHhcCCCEEEEEccCHH---HHHHHHHHHHcCC-cEEecccc-ce-------E-------eeCcccccCcCcccc
Q 009410 274 RAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQ-RVIGEPVV-SG-------L-------VLDDSWLWHSDFVTA 334 (535)
Q Consensus 274 ~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~g~-~v~~~~~~-~~-------~-------~~~~~~~~~~~~~~~ 334 (535)
+...+..+|..|...+. +-+.++.....++ +-+..|+. +. + ++++...++.-|.
T Consensus 262 -----~A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFA-- 334 (568)
T COG0804 262 -----AAIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFA-- 334 (568)
T ss_pred -----HHhcCceeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhh--
Confidence 12234455666654322 2234443333332 11112221 10 0 1222221111111
Q ss_pred ceeEEcCCCCCcccHHHHHH-HHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH-hcC-------
Q 009410 335 AKYVMSPPIRASGHNKALQA-ALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV-ESG------- 405 (535)
Q Consensus 335 ~~~~~~p~~r~~~~~~~~~~-~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~-~~~------- 405 (535)
..|...+..+... +++-|+.-.++||+..-..-... . ...+...- ++- ..+
T Consensus 335 -------eSRIR~eTIAAEdiLhDmGafSmisSDSQAMGRvGEv-----i-------~RtwQtA~-kmK~qrG~L~~d~~ 394 (568)
T COG0804 335 -------ESRIRPETIAAEDILHDMGAFSMISSDSQAMGRVGEV-----I-------TRTWQTAD-KMKKQRGALPEDAG 394 (568)
T ss_pred -------hhccchhhhhHHHHHhhccceEEeccchHhhhccchh-----h-------hhHHHHHH-HHHHhcCCCCCCCC
Confidence 1222222333333 56679999999997543222100 0 00011000 110 111
Q ss_pred ---CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 406 ---QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 406 ---~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
.+-...-+...|+|||-..|+++.+||+|+||.||||+|++. |.| -++..|+++|
T Consensus 395 ~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa------------------FFG----vKP~~vlkgG 452 (568)
T COG0804 395 GNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA------------------FFG----VKPELVLKGG 452 (568)
T ss_pred CCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechh------------------hcC----CCcceEEecc
Confidence 133456677889999999999999999999999999999853 333 3899999999
Q ss_pred EEEEEC
Q 009410 483 RVVWEN 488 (535)
Q Consensus 483 r~V~~~ 488 (535)
-+.+..
T Consensus 453 ~ia~a~ 458 (568)
T COG0804 453 MIAWAQ 458 (568)
T ss_pred eeeeec
Confidence 998874
|
|
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=193.08 Aligned_cols=291 Identities=16% Similarity=0.147 Sum_probs=207.1
Q ss_pred EEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-c--cccccceeeee
Q 009410 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMAI 177 (535)
Q Consensus 102 ~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 177 (535)
+.+|---|+|+|+.++ ++.....-+.+.|||++++|.+..+. ...+.++...+... . ..+++.+++..
T Consensus 23 ~~~~~~~d~h~hlr~~--------~~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l 94 (364)
T PLN02599 23 LTITRPDDWHLHLRDG--------AKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTL 94 (364)
T ss_pred EEecCCcceeeEccCc--------HHHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEE
Confidence 5699999999999876 23333444678999999999654322 44555555544443 3 34688888766
Q ss_pred ecCChhhHHHHHHHHHHcCCC-EEEEEeecCC---CCcC-CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009410 178 TKWDEVVSDEMEVMVKEKGIN-SFKFFMAYKG---SFMI-NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~-~ik~~~~~~~---~~~~-~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (535)
........+++..+. +.|+. ++|+|+...+ .... +.+.+..+++.+++.|+++.+|++.........
T Consensus 95 ~lt~~~~l~Ei~~~~-~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~------- 166 (364)
T PLN02599 95 YLTDNTTPEEIKAAK-ASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIF------- 166 (364)
T ss_pred ecCCCCCHHHHHHHH-HCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccccc-------
Confidence 333223457777775 78988 9999875322 1122 358999999999999999999998754210000
Q ss_pred CCCcccccccCChhhHHHHHHHHH--HHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcC
Q 009410 253 ITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (535)
..+...+.+.+ .+++..+.++|+.|.++.+.++.++.++ .+ +|++++++||++++.+++....
T Consensus 167 -------------~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak-~~-~vtae~tpHhL~l~~~~~~~~~ 231 (364)
T PLN02599 167 -------------DREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCG-DG-NVAATVTPQHLLLNRNALFQGG 231 (364)
T ss_pred -------------ccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhcc-CC-CEEEEecHHHHhcCHHHHhccC
Confidence 00122355666 4777889999999999999888887666 34 8999999999999988764322
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCe-EEEeCCCCCCChhhhhcCCCCcccCcchHHH---HHHHHHHHHHhcCC
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGIEE---RMHLVWDTMVESGQ 406 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~-~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~---~l~~~~~~~~~~~~ 406 (535)
.+..++++||+|...+++++|+++.+|.. +.+||||+|+....+.. ++. ++ |++. .++++. ....+.+
T Consensus 232 --~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~---~~g-~~-Gi~~~~~~l~~l~-~~~~~~g 303 (364)
T PLN02599 232 --LQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEA---SCG-CA-GIYSAPVALSLYA-KAFEEAG 303 (364)
T ss_pred --CCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcC---CCC-CC-CcccHHHHHHHHH-HHHHhcC
Confidence 23568999999999999999999999995 89999999998777642 221 11 3333 456544 3333445
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 407 ISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 407 ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
+++++.+..+.|||++||+..++|+
T Consensus 304 -~l~~l~~~~S~npA~~~gL~~~kg~ 328 (364)
T PLN02599 304 -ALDKLEAFTSFNGPDFYGLPRNTST 328 (364)
T ss_pred -CHHHHHHHHhHHHHHHhCCCCCCCe
Confidence 9999999999999999999446666
|
|
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-21 Score=179.89 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEee---EEEEEEECC
Q 009410 406 QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG---KVEVTIAGG 482 (535)
Q Consensus 406 ~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~---~v~~v~~~G 482 (535)
-||++.+++-.|..+|+.+|+ .+.|.|++|.+|||+|+|+......... .-...|+.|+.... .+..|.+.|
T Consensus 473 ~l~Le~av~rmT~~~Ae~~GL-~drGlvreG~rADl~viDp~~vr~~a~y----~~~~lPa~G~~~~~vn~~~vat~v~G 547 (579)
T COG3653 473 LLSLERAVRRMTGELAEWFGL-GDRGLVREGDRADLVVIDPHLVRDVATY----TEPALPAYGILRVMVNRNVVATGVGG 547 (579)
T ss_pred cccHHHHHHHHhccHHHHhCc-ccccccccccccceEEEccccccccccc----cCccCCCCcceEEEEeccceeeecce
Confidence 489999999999999999999 5789999999999999998655444321 11235776653322 355667779
Q ss_pred EEEEECCeecccCCCceEeecCCCccc
Q 009410 483 RVVWENDELNVVPGSGKYIEMRPFNYL 509 (535)
Q Consensus 483 r~V~~~~~~~~~~~~~~~~~~~~~~~~ 509 (535)
.+++++|++++....|+++|.-.+++.
T Consensus 548 vvs~rdGe~tg~~~aGR~lR~g~~g~~ 574 (579)
T COG3653 548 VVSFRDGEFTGQVKAGRYLRAGELGAA 574 (579)
T ss_pred eEEEecCcccCcccccchhcccccccc
Confidence 999999999997668999998777763
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=178.82 Aligned_cols=274 Identities=20% Similarity=0.215 Sum_probs=171.2
Q ss_pred eecccccccccccc-cC---CCCc--hhhhHHHHHHHHhCCcEEEeccccCCCC--------ChHHHHHHHHHHh--ccc
Q 009410 104 MPGGIDPHTHLAME-FM---GSET--IDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNS 167 (535)
Q Consensus 104 lPGlID~H~H~~~~-~~---g~~~--~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~--~~~ 167 (535)
+|||||.|+--... +. |-.. ...+...-..++++||||++|....+.. .....++...... +..
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 69999999854433 11 1111 1223344456789999999986432211 2223333333332 334
Q ss_pred ccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC-----------------------------------CcC
Q 009410 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS-----------------------------------FMI 212 (535)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~-----------------------------------~~~ 212 (535)
..+..++........+..+.+..+.....++.+.+.=.-+|. ...
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 455666666665666677777777755566666553211111 134
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
+.+.++++++.|+++|+++.+|..... +..+...+.|.. . ..|..
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~---~~v~~a~~~Gv~-------------------------------~-~E~p~ 205 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTP---EHVAEAHELGVV-------------------------------I-SEFPT 205 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCh---HHHHHHHHCCCe-------------------------------e-ccCCC
Confidence 568889999999999999999985432 122222223332 1 33443
Q ss_pred CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCC
Q 009410 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (535)
Q Consensus 293 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~ 372 (535)
+ .+.+..+++.|+.++++.. .. .+.+. .....+++++++.|+.++++||+.+..
T Consensus 206 t---~e~a~~a~~~G~~vv~gap-n~------------lrg~s----------~~g~~~~~~ll~~Gv~~al~SD~~p~s 259 (325)
T cd01306 206 T---LEAAKAARELGLQTLMGAP-NV------------VRGGS----------HSGNVSARELAAHGLLDILSSDYVPAS 259 (325)
T ss_pred C---HHHHHHHHHCCCEEEecCc-cc------------ccCcc----------ccccHhHHHHHHCCCeEEEEcCCCcHh
Confidence 3 2667788889998886531 10 00000 011245889999999999999986531
Q ss_pred hhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceee
Q 009410 373 STQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI 452 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i 452 (535)
. +...+ .+....++++.++|+++|.|||+++|++ +.|+|++||.||||+++.+..
T Consensus 260 l--------------------l~~~~-~la~~~gl~l~eAl~~aT~nPA~~lGl~-d~G~I~~G~~ADlvvvd~~~~--- 314 (325)
T cd01306 260 L--------------------LHAAF-RLADLGGWSLPEAVALVSANPARAVGLT-DRGSIAPGKRADLILVDDMDG--- 314 (325)
T ss_pred H--------------------HHHHH-HHHHHcCCCHHHHHHHHhHHHHHHcCCC-CCCCcCCCCCCCEEEEeCCCC---
Confidence 1 11222 3344567999999999999999999996 579999999999999997521
Q ss_pred ecCCccccCCCCCCCCeeEeeEEEEEEECC
Q 009410 453 TARSHHSRLDTNVYEGRRVKGKVEVTIAGG 482 (535)
Q Consensus 453 ~~~~~~~~~~~~p~~~~~~~~~v~~v~~~G 482 (535)
...|..||++|
T Consensus 315 -------------------~p~v~~v~~~G 325 (325)
T cd01306 315 -------------------VPVVRTVWRGG 325 (325)
T ss_pred -------------------CCccceEEeCc
Confidence 13688899887
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=185.91 Aligned_cols=299 Identities=23% Similarity=0.252 Sum_probs=160.3
Q ss_pred ecCCCEEeecccccccc--cccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhccccccccee
Q 009410 97 DATGKFVMPGGIDPHTH--LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174 (535)
Q Consensus 97 D~~G~~vlPGlID~H~H--~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (535)
|++|++|+|||||+|+| ......+....+........++.+|||+++++.... .......... .....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~~~~---~~~~~~~~~~-------~~~~~ 70 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMPGTN---PEELNRARRR-------GAGYP 70 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESSSSS---HHHHHHHHHH-------ESEEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCCCCC---chhhHHHHhh-------ccccc
Confidence 89999999999999999 333322333334445667788999999999853221 2222222222 11111
Q ss_pred eeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHHHcCC
Q 009410 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGI 253 (535)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~g~ 253 (535)
................+.........++...+ .......+.+.++.+...+ +.+..|+... ........-.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 146 (304)
T PF13147_consen 71 GSGAGPRGTTIEELEALVDLIAAEGVGFVAAY---NGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAEGLDAME 146 (304)
T ss_dssp EECESCCHHHHHHHHHHHHHHHHTEEEEESSS---THHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHHHHHTTH
T ss_pred cccccccccchHHHHHHHHHHhhcCcceeecc---ccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHhcccchh
Confidence 11111222233333333323333444443221 1346778888888999999 5555555433 11111111111000
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccc
Q 009410 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 333 (535)
. ....................+..+....................++....+.. +..... ..
T Consensus 147 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~ 208 (304)
T PF13147_consen 147 H--------ILPHEVAEALHLAEALAQGAGPGLHCHVASDDATAEGVAIAHGFGLPPTPLHL-----LARDAA-----AA 208 (304)
T ss_dssp H--------STHHHHHHHHHHHHHHHHHHTHCEEEEETSSHHHHHHHHHHHHTTHEEEEEEH-----HHHHHH-----HH
T ss_pred h--------hhhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhHHHHHHHhhccccchHHh-----hHHHHH-----hc
Confidence 0 01111112222222333333555555444444432224444545555443320 000000 00
Q ss_pred cceeEEcCCCC--CcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHH
Q 009410 334 AAKYVMSPPIR--ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTD 411 (535)
Q Consensus 334 ~~~~~~~p~~r--~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~e 411 (535)
...+...|+.+ .......++.++++|++++++||+.+...... ...+.... .+....|+++++
T Consensus 209 ~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~--------------~~~~~~~~-~~~~~~gl~~~~ 273 (304)
T PF13147_consen 209 GIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTEGS--------------GDLLHEAM-RLAVRAGLSPEE 273 (304)
T ss_dssp GGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTTCT--------------TTHHHHHH-HHHHHTSSTHHH
T ss_pred CceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccccc--------------cccchhhh-hHHhhcCCCHHH
Confidence 24556677766 67778889999999999999999876532100 01122222 222347899999
Q ss_pred HHHHHhHHHHHHcCCCCCCccccCCCCccEE
Q 009410 412 YVRLTSTECARIFNVYPRKGAILVGSDADII 442 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlv 442 (535)
|++++|.|||++||+++++|+|++||+||||
T Consensus 274 al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 274 ALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp HHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred HHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 9999999999999998899999999999997
|
... |
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=182.89 Aligned_cols=289 Identities=20% Similarity=0.225 Sum_probs=157.6
Q ss_pred EEeecccccccccccccCCCC-------chhhhHHHHHHHHhCCcEEEeccccCCCCCh---HHHHHHHHHHhccccc--
Q 009410 102 FVMPGGIDPHTHLAMEFMGSE-------TIDDFFSGQAAALAGGTTMHIDFVIPINGSL---TAGFEAYEKKAKNSCM-- 169 (535)
Q Consensus 102 ~vlPGlID~H~H~~~~~~g~~-------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~---~~~~~~~~~~~~~~~~-- 169 (535)
+|+|||||+|+|+..+ ... ..+.+......++++||||++|+........ ................
T Consensus 1 ~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQG--GLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIELRNEIMEGLAAAPKIEPAM 78 (333)
T ss_dssp EEEE-EEEEEEEGGGT--THTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CEEcChhHHhhCcCCc--CccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCccccccccccccccccchhhhccc
Confidence 6999999999999987 333 3444566778889999999999854333311 1112222222221111
Q ss_pred ------ccceeeeeecCChhh---------HHHHHHHHHHcCCC-----EEEEEeecCCCCcCCHHHHHHHHHHHHh---
Q 009410 170 ------DYGFHMAITKWDEVV---------SDEMEVMVKEKGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKS--- 226 (535)
Q Consensus 170 ------~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~a~~--- 226 (535)
..+.+........+. ..++.+.....+.. .+...........++.+.+...++.+++
T Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (333)
T PF01979_consen 79 TLLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLA 158 (333)
T ss_dssp EEEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHH
Confidence 111111111100000 01122222232222 3334444556677889999999999998
Q ss_pred --c-CCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHH----HHHhcCCCEEEEEccCHHHHHH
Q 009410 227 --L-GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR----LAEFVNTPLYVVHVMSMDAMEE 299 (535)
Q Consensus 227 --~-g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~~~~ 299 (535)
. +.++.+|+.+............ + ...+..... .....+....+.|+..... +.
T Consensus 159 ~~~~~~~~~~h~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-~~ 219 (333)
T PF01979_consen 159 AEKLGIPVHIHVAEGTGEVEAMTHLY--G----------------MSPIEALDHLGLLEEAIDDGVDLIAHGTHLSD-EE 219 (333)
T ss_dssp HHHHTHEEEEEESSSHHHHCCCHHHH--S----------------HHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEH-HH
T ss_pred HHhhcccceeeeccCcccceeEeeee--e----------------ccchhhhccchhhhhhcccccceeeccccCCH-HH
Confidence 4 9999999966543311111100 0 000111100 0111133456789988775 78
Q ss_pred HHHHHHcCCcEEeccccceEeeC-cccccCcCccccceeEEcCCCCCcccHHHHHHHHhc-CCeEEEeCCCCCCChhhhh
Q 009410 300 IAKARKAGQRVIGEPVVSGLVLD-DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-GILQLVGTDHCAFNSTQKA 377 (535)
Q Consensus 300 ~~~~~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~-Gv~~~lgtD~~~~~~~~~~ 377 (535)
++++++.+..+..|+........ ..... .+.. . .............+..++.+ |+. +|||+.. .
T Consensus 220 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~---~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~~---~--- 285 (333)
T PF01979_consen 220 IELLKETGIGIIHCPISNDSAPHKPGKAI--MMDG-T---AEGIYGLGSGGAPLFRMLDKMGVN--LGTDGVA---E--- 285 (333)
T ss_dssp HHHHHHHTHEEEEEHHHHHHHHHHTTHHS--ETTB-S---BTSBSCTTHHHHHHHHHHHCTTHE--ETTCTTC---H---
T ss_pred hhhhhccCCccccccchhhhhcccccccc--ccch-h---ccccccccccccchhhhhhhcccc--ccccccc---c---
Confidence 88888889888888765332000 00000 0000 0 00000011122345566666 887 9999433 1
Q ss_pred cCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEc
Q 009410 378 FGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445 (535)
Q Consensus 378 ~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld 445 (535)
.+..+. +. +++++++|+++|.|||++||+++++|+|++||+|||||+|
T Consensus 286 ---------------~l~~~~----~~-~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 286 ---------------ELKLFV----RL-GISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp ---------------HHHHHH----HH-HSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ---------------cccccc----cc-cccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 222222 12 2999999999999999999999999999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=155.46 Aligned_cols=408 Identities=23% Similarity=0.250 Sum_probs=206.1
Q ss_pred CcccEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc---cCCCCch
Q 009410 51 SSSKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME---FMGSETI 124 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~---~~g~~~~ 124 (535)
|+..++|+|+-|+|+-.. +.-+|.|+||+|++=..-. ...+++||++|+++|||=+|+|+|+..+ ......+
T Consensus 1 m~~e~~IKNg~V~dPlngingE~MDI~vkdGKIVe~sev~--~~~aKVIDA~gklvm~GGvD~HsHvAG~KvNvGR~~rP 78 (575)
T COG1229 1 MAMEILIKNGIVYDPLNGINGEKMDICVKDGKIVEESEVS--ESKAKVIDASGKLVMPGGVDSHSHVAGAKVNVGRIMRP 78 (575)
T ss_pred CCceEEeecCEEecCccCCCCceeeEEeecCeEeeecccc--cccceEEeccCcEEecCccccccccccccccccceeCh
Confidence 356799999999997753 6789999999998654321 1248999999999999999999999875 1111122
Q ss_pred hhhHH----------------------HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHH---hcccccccc-eee---
Q 009410 125 DDFFS----------------------GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK---AKNSCMDYG-FHM--- 175 (535)
Q Consensus 125 ~~~~~----------------------~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~--- 175 (535)
++.+. ..-.+.+-|.||+++...|+-. .+..-+.+... ....+.-++ .+.
T Consensus 79 ed~rk~~~~~~gk~rag~G~svpst~~~GY~YA~mGYTtv~EaA~Ppl~-arHtHEE~~~tPilD~~a~~lfgnNw~vme 157 (575)
T COG1229 79 EDSRKVVLKKTGKTRAGSGYSVPSTYKTGYRYAKMGYTTVIEAAIPPLL-ARHTHEEFRATPILDKAAYPLFGNNWFVME 157 (575)
T ss_pred hhhhhhhhhhcccccccccccccccchhhhhhhhccceeEeeccCCccc-cccchhhhhcccccccccccccccchhhhh
Confidence 22211 1123466799999988665543 22222222211 111111111 011
Q ss_pred eeecCCh-hhHHHHHHHHHHcCCCEEEEEeecCCC------------------CcCC-HHHHHHHHHHHHhcCCeEEEEc
Q 009410 176 AITKWDE-VVSDEMEVMVKEKGINSFKFFMAYKGS------------------FMIN-DELLIEGFKRCKSLGALAMVHA 235 (535)
Q Consensus 176 ~~~~~~~-~~~~~~~~~~~~~g~~~ik~~~~~~~~------------------~~~~-~~~l~~~~~~a~~~g~~v~~H~ 235 (535)
-+...+- .....+..+++...--++|+. ++.|. ..++ .+.++.+.+...+++++..+|.
T Consensus 158 Yi~egd~ek~aAyvAW~lkatkgygiKiV-NPgG~eaWgwG~NV~sLddpvp~FdiTP~EIi~glaevnE~L~lphsIHl 236 (575)
T COG1229 158 YIREGDMEKAAAYVAWLLKATKGYGIKIV-NPGGVEAWGWGKNVHSLDDPVPYFDITPREIIKGLAEVNERLGLPHSIHL 236 (575)
T ss_pred hhhcCCHHHHHHHHHHHHHhcccceEEEE-CCCCcccccccCCcccccCCCCCcccCHHHHHHHHHHHHHhhCCCcceEe
Confidence 1111111 222333344433334455553 22110 1233 5667777777788899866654
Q ss_pred --CChhhH---HHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccC----HH-------HHHH
Q 009410 236 --ENGDAV---FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS----MD-------AMEE 299 (535)
Q Consensus 236 --~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~----~~-------~~~~ 299 (535)
++.... ...++.+ .+. .+ ...+|.. .+...-++.+|+.. .+ ..+.
T Consensus 237 H~N~LG~PGnyetT~es~---k~~--~~-v~~~p~~-------------~~r~q~l~~tHvqFnsygGtsWrdfeS~a~~ 297 (575)
T COG1229 237 HCNNLGHPGNYETTLESM---KLP--DG-VKPRPED-------------GERDQVLYVTHVQFNSYGGTSWRDFESGAEE 297 (575)
T ss_pred ccccCCCCCceeeehhhh---ccc--cC-cccCCCC-------------CcccceeEeeeEEeeccCCCchhhhhhccHH
Confidence 332111 1111110 000 00 0001101 11122245555521 11 1133
Q ss_pred HHHHHHcCCcEEeccccc----eEeeCc---------------ccccCcCccccce---eEEcCCCCCcccHHH----HH
Q 009410 300 IAKARKAGQRVIGEPVVS----GLVLDD---------------SWLWHSDFVTAAK---YVMSPPIRASGHNKA----LQ 353 (535)
Q Consensus 300 ~~~~~~~g~~v~~~~~~~----~~~~~~---------------~~~~~~~~~~~~~---~~~~p~~r~~~~~~~----~~ 353 (535)
+.......-.|+.....- ...+.. ....+.++..|++ +..+|..-...-+-+ +.
T Consensus 298 iA~yvN~~dhv~iD~Gqv~fgeattMTaDgP~e~~l~~ltg~kWsN~DvElE~gsGVVPf~YspknpV~avQWAiGLEl~ 377 (575)
T COG1229 298 IADYVNKNDHVVIDLGQVTFGEATTMTADGPMEYDLHKLTGLKWSNCDVELETGSGVVPFIYSPKNPVHAVQWAIGLELA 377 (575)
T ss_pred HHHhhccCCcEEEecCCcccccceeeccCCchhhhHHHhhcccccCCceeeecCCceEeeeecCCCchhHhHHHhhheee
Confidence 333333333333322110 001110 0011111222221 112222111111112 12
Q ss_pred HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHH--------HHHHH----h----cCCCCHHHHHHHHh
Q 009410 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLV--------WDTMV----E----SGQISVTDYVRLTS 417 (535)
Q Consensus 354 ~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~--------~~~~~----~----~~~ls~~eal~~~T 417 (535)
.+.++-.++++.||++.. +||...|.-+..-|..- +++++ . ...+++.|+..+--
T Consensus 378 Lli~dp~kv~lTTD~PNg---------GpFt~YP~v~awlMS~k~R~~~i~~~hkwa~~rs~l~~idrE~t~~eia~~TR 448 (575)
T COG1229 378 LLINDPWKVVLTTDSPNG---------GPFTRYPEVMAWLMSEKYREEWIEGVHKWAQDRSALAGIDRELTLYELAIMTR 448 (575)
T ss_pred eeecCCCeEEEeccCCCC---------CCccccHHHHHHHHhHHHHHHHHhhhhHhhhhhcccccccccccHHHHHHHHh
Confidence 244456789999996532 46776665111111110 11111 1 22378889988888
Q ss_pred HHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCC
Q 009410 418 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGS 497 (535)
Q Consensus 418 ~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~ 497 (535)
.+||+.+|+.+++|.|-+|.+||+.|+|.||..--+..+... ...+ .++..+|+++|++|.++|+++..+ .
T Consensus 449 a~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~dye~-----v~ka---f~~A~ytlK~GeIvvkdGeiv~~p-~ 519 (575)
T COG1229 449 ANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSNDYEK-----VEKA---FRKAAYTLKGGEIVVKDGEIVAEP-E 519 (575)
T ss_pred cChhhhcccccccCccCcCccCceEEEecChhhcCCcccHHH-----HHHH---HhheeEEecCceEEEecceEEecc-c
Confidence 999999999989999999999999999977553222111111 1111 246789999999999999999865 3
Q ss_pred ce
Q 009410 498 GK 499 (535)
Q Consensus 498 ~~ 499 (535)
|+
T Consensus 520 gr 521 (575)
T COG1229 520 GR 521 (575)
T ss_pred Cc
Confidence 43
|
|
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-18 Score=174.08 Aligned_cols=250 Identities=19% Similarity=0.158 Sum_probs=141.9
Q ss_pred HHHhCCcEEEeccccCCCCChHHHHHHHHHHhccc--ccccceee---ee---ecCChhhHHHHHH---HHHHcCCCEEE
Q 009410 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS--CMDYGFHM---AI---TKWDEVVSDEMEV---MVKEKGINSFK 201 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~---~~~~~~~~~~~~~---~~~~~g~~~ik 201 (535)
.+.+.||||+.|+.. ........++.+.+..... .+++..+. ++ .+...+....+.. +....|..
T Consensus 138 ~~~a~GiTt~~d~~~-~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~~--- 213 (404)
T PF07969_consen 138 AAGAYGITTVLDYGG-GFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGAP--- 213 (404)
T ss_dssp HHCHTCEEEETTCEC-CCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTSE---
T ss_pred HhcCCCeEEecCCcc-ccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCccccc---
Confidence 345799999999972 1123445555555544332 23332221 11 1121222222222 22223321
Q ss_pred EEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHh
Q 009410 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (535)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (535)
....+....+++.+.++++.|.+.|+++.+|+.++..+...++.+.....
T Consensus 214 --~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~---------------------------- 263 (404)
T PF07969_consen 214 --VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARA---------------------------- 263 (404)
T ss_dssp --EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTC----------------------------
T ss_pred --ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhcc----------------------------
Confidence 13355566788889999999999999999999888777666655433222
Q ss_pred cCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCe
Q 009410 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL 361 (535)
Q Consensus 282 ~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~ 361 (535)
...+.|+..... ++++.+++.|+.+...+ +++..+........... .+ .....+++.++++|++
T Consensus 264 ---~~~i~h~~~~~~-~~~~~~~~l~~~~~~~p--~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~Gv~ 327 (404)
T PF07969_consen 264 ---RGRIEHAELIDP-DDIERMAELGVTASVQP--HFLFSWGGEWYEERLGP---------ER-ARRIYPIRSLLDAGVR 327 (404)
T ss_dssp ---CHEEEEHCBCCH-HHHHHHHHHTTEEEECC--THHHHETEETHHHHHHH---------HC-GGGBTHHHHHHHCTTE
T ss_pred ---cceeeccccCCH-HHHHHHHHhCCccccCh--hHhhhccchhhhhhhhh---------HH-HHHHhHHHHHHhccCc
Confidence 115788888776 88999999998776655 22211110000000000 00 0001458999999999
Q ss_pred EEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH------hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccC
Q 009410 362 QLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV------ESGQISVTDYVRLTSTECARIFNVYPRKGAILV 435 (535)
Q Consensus 362 ~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~------~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~ 435 (535)
+++|||+.....+ ||. ++............ ..+.+|++|||+++|.|||+.+|+++++|+|++
T Consensus 328 v~~gsD~p~~~~~-------P~~----~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~Gsl~~ 396 (404)
T PF07969_consen 328 VALGSDAPVSPPN-------PFR----GIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDRKGSLEP 396 (404)
T ss_dssp EEE--TTTTSSCC-------HHH----HHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTSSSSST
T ss_pred eecCcCCcccccC-------cch----hhhhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCCcceECC
Confidence 9999996532111 222 22222211111100 126799999999999999999999988899999
Q ss_pred CCCccEEE
Q 009410 436 GSDADIII 443 (535)
Q Consensus 436 Gk~ADlvv 443 (535)
||.|||||
T Consensus 397 Gk~AD~vV 404 (404)
T PF07969_consen 397 GKLADFVV 404 (404)
T ss_dssp TSBS-EEE
T ss_pred CCCcCeEC
Confidence 99999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=146.03 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeE
Q 009410 392 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV 471 (535)
Q Consensus 392 ~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~ 471 (535)
.-|..+++-+.+.-|-|.+-||+++|..||.+||+++.+|+|..|.+||||++|.+
T Consensus 334 ApMd~CvRhf~kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~------------------------ 389 (407)
T KOG3892|consen 334 APMDVCVRHFLKATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDS------------------------ 389 (407)
T ss_pred cCcHHHHHHHHHhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccc------------------------
Confidence 35677787788888899999999999999999999999999999999999999943
Q ss_pred eeEEEEEEECCEEEEEC
Q 009410 472 KGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 472 ~~~v~~v~~~Gr~V~~~ 488 (535)
-.|+.+|+.|+.||+.
T Consensus 390 -l~V~aT~isG~~V~~a 405 (407)
T KOG3892|consen 390 -LHVQATYISGELVWQA 405 (407)
T ss_pred -eEEEEEEEccEEEEec
Confidence 3899999999999975
|
|
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=151.22 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=132.8
Q ss_pred EEeecccccccccccccC-C----C-------------------CchhhhHH----HHHHHHhCCcEEEeccccCCCCCh
Q 009410 102 FVMPGGIDPHTHLAMEFM-G----S-------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSL 153 (535)
Q Consensus 102 ~vlPGlID~H~H~~~~~~-g----~-------------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~ 153 (535)
+|+|||||+|+|+++.+. | . .++++++. ...+++++|+||+.|+........
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 489999999999987621 1 0 12222222 234568899999999742211123
Q ss_pred HHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEE
Q 009410 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (535)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (535)
....+...+.+.+. .... ..+. ..+..++ +. ...+.+ ...+....+ ++++++.|+++|+++.+
T Consensus 81 ~a~~~a~~~~g~r~---~~~~-~~~~-~~~~~~~---~~--~~~~~~----~~~~~~~~~---l~~~~~~A~~~g~~v~~ 143 (263)
T cd01305 81 ELLRRALGKLPVPF---EVIL-GRPT-EPDDPEI---LL--EVADGL----GLSSANDVD---LEDILELLRRRGKLFAI 143 (263)
T ss_pred HHHHHHHHhcCCCc---eEEe-ccCC-cchHHHH---HH--hhcccc----cCCCCCccC---HHHHHHHHHHCCCeeEE
Confidence 33333344433332 1111 1111 1111121 11 122222 223333333 99999999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEec
Q 009410 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGE 313 (535)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~ 313 (535)
|+.+..... |. ..+..+.++ +... +.|+...++ ++++++++.|+.++.|
T Consensus 144 H~~e~~~~~---------g~----------------~~i~~~~~~----~~~~-i~H~~~l~~-~~~~~la~~g~~v~~~ 192 (263)
T cd01305 144 HASETRESV---------GM----------------TDIERALDL----EPDL-LVHGTHLTD-EDLELVRENGVPVVLC 192 (263)
T ss_pred ecCCCCCCC---------Cc----------------hhHHHHHhC----CCCE-EEEcCCCCH-HHHHHHHHcCCcEEEC
Confidence 996542100 00 112222222 3344 689988887 8899999999999999
Q ss_pred cccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHH
Q 009410 314 PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEER 393 (535)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~ 393 (535)
|..+. ..+... +| +++++++|+++++|||+...+... +|. +++
T Consensus 193 P~sn~-------------~l~~g~---~p---------~~~l~~~Gv~v~lGtD~~~~~~~~------~~~------~~~ 235 (263)
T cd01305 193 PRSNL-------------YFGVGI---PP---------VAELLKLGIKVLLGTDNVMVNEPD------MWA------EME 235 (263)
T ss_pred hhhHH-------------HhCCCC---CC---------HHHHHHCCCcEEEECCCCccCCCC------HHH------HHH
Confidence 86421 111111 22 899999999999999965432111 122 222
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHhHHHHHH
Q 009410 394 MHLVWDTMVESGQISVTDYVRLTSTECARI 423 (535)
Q Consensus 394 l~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 423 (535)
+.....++ ...+++.++|+++|.|+|++
T Consensus 236 ~~~~~~~~--~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 236 FLAKYSRL--QGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred HHHHHhcc--cccCCHHHHHHHHhhccccC
Confidence 22222111 12469999999999999974
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-15 Score=111.41 Aligned_cols=67 Identities=49% Similarity=0.636 Sum_probs=48.1
Q ss_pred EEEeCCEEEEeeCCCCCC-CCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEE
Q 009410 73 VYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142 (535)
Q Consensus 73 I~I~~G~I~~Vg~~~~~~-~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv 142 (535)
|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+... .............++++|||||
T Consensus 1 V~I~~g~I~~v~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~---~~~~~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPADAAEVIDAKGKYVMPGFIDMHTHLGEP---GWQSLDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTSTCCEEEEETTCEEEE-EEEEEE-TTTT---CEGGCTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCCCCCEEEECCCCEEeCCeEeeeeccccc---cccccchhhHHHHHHCcceeeC
Confidence 789999999997654433 457889999999999999999997632 1111112344566789999997
|
... |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=127.16 Aligned_cols=241 Identities=13% Similarity=0.087 Sum_probs=130.0
Q ss_pred HHHHHHhCCcEEEeccccCCCC---ChHHHHHHHHHHhc-cccccc-ce-eeeeecCChhhHHHHHHHHHHcCCCEEEEE
Q 009410 130 GQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAK-NSCMDY-GF-HMAITKWDEVVSDEMEVMVKEKGINSFKFF 203 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~ 203 (535)
.++.++++|+|.++.+....+. ...+.+.+..+... ..-+.+ .| ..+.. ..+..+.+.+.. .. ++.+.-.
T Consensus 74 ~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~--~~~~~~l~~~al-~~-advvGGi 149 (329)
T PRK06886 74 AIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI--EPTAKKWFDIGS-EM-VDMIGGL 149 (329)
T ss_pred HHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc--CccHHHHHHHHH-Hh-CCEEeCc
Confidence 4455788999999866533222 33344444333332 222222 11 11121 122234444443 23 5555433
Q ss_pred eec-CCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHh
Q 009410 204 MAY-KGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (535)
Q Consensus 204 ~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (535)
... ......+.+.+..+++.|+++|+++++|+.... .....++.+. .+.++. ..
T Consensus 150 P~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~-----------------------~~~~~~-Gl 205 (329)
T PRK06886 150 PYRDELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLC-----------------------DKTIEH-GM 205 (329)
T ss_pred cCCcCCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHH-----------------------HHHHHc-CC
Confidence 111 011245689999999999999999999995432 1122222211 011111 11
Q ss_pred cCCCEEEEEccCHHH------HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHH
Q 009410 282 VNTPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAA 355 (535)
Q Consensus 282 ~~~~~~~~H~~~~~~------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 355 (535)
..++.+.|+..... .+.++++++.|+.|+++|..+ ++++.... .+..+.+ . .++.++
T Consensus 206 -~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~P~sn-l~l~~~~~---~~p~~rG---v---------~pv~eL 268 (329)
T PRK06886 206 -QGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIACPMAW-IDSNRKED---LMPFHNA---L---------TPADEM 268 (329)
T ss_pred -CCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEECchhh-hhhccccc---cCcCCCC---C---------CCHHHH
Confidence 34788999977553 236899999999999999863 21111000 0001111 1 238999
Q ss_pred HhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 356 LATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 356 l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
+++|+++++|||+...++. ||.+. .+...+.... .. ..-.+..++|+++|.|+|+++|++
T Consensus 269 ~~aGV~V~lGtDnv~D~~~-------p~g~~--Dmle~~~l~~-~~--~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 269 IPEGITVALGTDNICDYMV-------PLCEG--DMWQELSLLA-AG--CRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred HHCCCeEEEecCCCcccCC-------CCCCC--CHHHHHHHHH-HH--cCCCCHHHHHHHHhhhHHHHhCCC
Confidence 9999999999997542111 11100 1111122211 11 222478999999999999999984
|
|
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=130.28 Aligned_cols=249 Identities=21% Similarity=0.223 Sum_probs=140.7
Q ss_pred ccccccccccccCCC------------Cc----hhhhHHHHHHHHhCCcEEEeccccCCCC-----ChHHHHHHHHHH-h
Q 009410 107 GIDPHTHLAMEFMGS------------ET----IDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKK-A 164 (535)
Q Consensus 107 lID~H~H~~~~~~g~------------~~----~~~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~-~ 164 (535)
|||+|+|+....... .+ ..........++++||||+.++...... ......+...+. +
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 799999988762111 01 2223455667899999999998655432 122222222222 1
Q ss_pred cccccccceeeeeecC----ChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009410 165 KNSCMDYGFHMAITKW----DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (535)
Q Consensus 165 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 240 (535)
.+.....+.+...... .+...+.+.... ..|+.++++...+.. ...+.+.++++++.|+++++++.+|+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGL-ELGAVGLKLAGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGELPD 158 (275)
T ss_pred eeeEEeccCCCCccccchhHHHHHHHHHHHHH-hcCCeeEeeCCCCCC-CCCCcHHHHHHHHHHHHcCCeEEEeeCCccc
Confidence 1111111111110000 011223333322 247888877544321 1247899999999999999999999965432
Q ss_pred HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEe
Q 009410 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (535)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 320 (535)
. ...+.++++.... +.++++.|+...+. +.++.+++.|+.+..|+.....
T Consensus 159 ~---------------------------~~~~~~~~~~~~~-~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~~~~~~~~- 208 (275)
T cd01292 159 P---------------------------TRALEDLVALLRL-GGRVVIGHVSHLDP-ELLELLKEAGVSLEVCPLSNYL- 208 (275)
T ss_pred C---------------------------ccCHHHHHHHHhc-CCCEEEECCccCCH-HHHHHHHHcCCeEEECCccccc-
Confidence 1 0012223333322 66789999988655 7788888889888887754211
Q ss_pred eCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHH
Q 009410 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDT 400 (535)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 400 (535)
.. +......++..+++.|+++++|||+.+......+ ...+.... .
T Consensus 209 -~~--------------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~~-------------~~~~~~~~-~ 253 (275)
T cd01292 209 -LG--------------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDL-------------LALLRLLL-K 253 (275)
T ss_pred -cc--------------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCCH-------------HHHHHHHH-H
Confidence 00 0011124488899999999999997654211100 01111111 1
Q ss_pred HHhcCCCCHHHHHHHHhHHHHHH
Q 009410 401 MVESGQISVTDYVRLTSTECARI 423 (535)
Q Consensus 401 ~~~~~~ls~~eal~~~T~~~A~~ 423 (535)
.. ..+++.+++++++|.|||++
T Consensus 254 ~~-~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 254 VL-RLGLSLEEALRLATINPARA 275 (275)
T ss_pred HH-hcCCCHHHHHHHHhccccCC
Confidence 11 22389999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-08 Score=91.67 Aligned_cols=286 Identities=17% Similarity=0.189 Sum_probs=170.7
Q ss_pred EeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC--ChHHHHHHHHHHhccccc--ccceeeeee
Q 009410 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCM--DYGFHMAIT 178 (535)
Q Consensus 103 vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 178 (535)
-+..-.|+|.|+..+ ++......+.+.++...+-|.+-.+. +..+.++...+.-..... ++-..+..-
T Consensus 6 ~i~rPdDwHlHLRdg--------~mL~~V~p~ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlY 77 (344)
T COG0418 6 TIRRPDDWHLHLRDG--------AMLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLY 77 (344)
T ss_pred eccCccceeEEecCc--------cHHHHhhhhhhhhcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEE
Confidence 456678999999876 11111222334477777766554433 444444443333322211 222222222
Q ss_pred cCChhhHHHHHHHHHHcC-CCEEEEEeecCC----CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCC
Q 009410 179 KWDEVVSDEMEVMVKEKG-INSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (535)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g-~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~ 253 (535)
..+.-..+++.+.. ..| ..++|+|....- .-.-+.+.+..+++..++.|+++.+|-+......+..++
T Consensus 78 Ltd~~~peel~~a~-~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdr------ 150 (344)
T COG0418 78 LTDSTTPEELEEAK-AKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDR------ 150 (344)
T ss_pred ecCCCCHHHHHHHH-hcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccchhh------
Confidence 22223456666655 444 788999875421 112247788899999999999999998665332211111
Q ss_pred CCcccccccCChhhHHHHHHHHHH-HHH-hcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCc
Q 009410 254 TGPEGHALSRPPLLEGEATTRAIR-LAE-FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 331 (535)
|..-+...++ +.+ .-..+++++|+++.+. ++..++.+.++.++.++||+.++.++..--+.
T Consensus 151 --------------E~~Fi~~vl~pl~~~fP~LKIV~EHiTT~da---v~~v~~~~~nlaATIT~hHL~~nrnd~l~Ggi 213 (344)
T COG0418 151 --------------EAAFIESVLEPLRQRFPKLKIVLEHITTKDA---VEYVKDANNNLAATITPHHLLLNRNDMLVGGI 213 (344)
T ss_pred --------------HHHHHHHHHHHHHhhCCcceEEEEEeccHHH---HHHHHhcCcceeeEeehhheeeehhhhhcCCC
Confidence 0111222222 222 3367899999988655 55666777779999999999999876642221
Q ss_pred cccceeEEcCCCCCcccHHHHHHHHhcC-CeEEEeCCCCCCChhhhhcC--CCCcccCcchHHHHHHHHHHHHHhcCCCC
Q 009410 332 VTAAKYVMSPPIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFG--IDDFRKIPNGIEERMHLVWDTMVESGQIS 408 (535)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~~~~~l~~G-v~~~lgtD~~~~~~~~~~~~--~~~~~~~~~g~~~~l~~~~~~~~~~~~ls 408 (535)
...+.+.|-.....++.++.++...| .++.+|||++|.....+... +-..++. -..++.+.+.+-+.+.|.
T Consensus 214 --~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsa----p~al~~~AevFE~~naL~ 287 (344)
T COG0418 214 --RPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESACGCAGIFSA----PFALPLYAEVFEEENALD 287 (344)
T ss_pred --CcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCccccccccccccccccc----HhHHHHHHHHHHHhcHHH
Confidence 14566888888899999999988876 45999999999887766321 1111222 224445554443444344
Q ss_pred HHHHHHHHhHHHHHHcCCCC
Q 009410 409 VTDYVRLTSTECARIFNVYP 428 (535)
Q Consensus 409 ~~eal~~~T~~~A~~lgl~~ 428 (535)
.-| ..++.|+.+++|+..
T Consensus 288 ~Le--aF~S~nGp~fY~lp~ 305 (344)
T COG0418 288 NLE--AFASDNGPKFYGLPR 305 (344)
T ss_pred HHH--HHHhhcCcceecccC
Confidence 444 357899999999953
|
|
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.1e-08 Score=85.42 Aligned_cols=286 Identities=14% Similarity=0.053 Sum_probs=167.3
Q ss_pred EeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC--ChHHHHHHHHHHhcccccccceeeeeecC
Q 009410 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAITKW 180 (535)
Q Consensus 103 vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (535)
-+|+.-|+|+|+....+-..- ......+||.-..-|.+-.+. ...+.+....... .......+.+..-..
T Consensus 6 ~i~~~~DmHvHlR~g~ml~aV-------vP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~-kL~skttfLMslYLs 77 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGDMLHAV-------VPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIM-KLPSKTTFLMSLYLS 77 (344)
T ss_pred ecCCccceeEEeccCCeeeee-------ccccccCceeEEEEcCCCCCCcchHHHHHHHHHHHH-hcCccceeEEEEeec
Confidence 468899999999876111000 111246789988877654433 3444444332222 111112222222222
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEEeecCCCC---cC--CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009410 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSF---MI--NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (535)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~---~~--~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (535)
.+...+.+++.++..+..++|.|....-.+ .. .-+.+.-++++.++.++++.+|-+-+...+.
T Consensus 78 ~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~------------ 145 (344)
T KOG2902|consen 78 DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDG------------ 145 (344)
T ss_pred CCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCC------------
Confidence 233456666766556788999886542111 11 2456778889999999999999876532210
Q ss_pred cccccccCChhhHHHHHHHHHHHHHhc-CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccc
Q 009410 256 PEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (535)
.....+..-+..++++...+ ..+++++||.+.++.+.++.+ .+..|..+.++++++++.++.. ..
T Consensus 146 -------~Vf~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a--~~~sVaaTvTahHL~Lt~~dwq-----g~ 211 (344)
T KOG2902|consen 146 -------HVFDAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESA--KEGSVAATVTAHHLLLTRNDWQ-----GQ 211 (344)
T ss_pred -------ceecchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhh--cCCceeeEeehheeEEehhhhc-----CC
Confidence 01111223344555554444 678899999998887777754 4667888899999999876543 22
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCC-eEEEeCCCCCCChhhhhcCCCCcccCcc--hHHHHHHHHHHHHHhcCCCCHHH
Q 009410 335 AKYVMSPPIRASGHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPN--GIEERMHLVWDTMVESGQISVTD 411 (535)
Q Consensus 335 ~~~~~~p~~r~~~~~~~~~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~--g~~~~l~~~~~~~~~~~~ls~~e 411 (535)
....+.|......++.++.++...|- ++.+|||+.|.....+.. +..+-+ .--..++.+.+.+-+++.|+..+
T Consensus 212 P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~----~~~cAGvysqpfA~sy~A~VFde~gaLd~Lk 287 (344)
T KOG2902|consen 212 PHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKES----SCGCAGVYSQPFALSYYAKVFDEAGALDKLK 287 (344)
T ss_pred CcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCccccccc----CCCcceeecccchHHHHHHHHhhhchHHHHh
Confidence 33346777777888888888877765 489999999987776532 111111 11124445554444455443333
Q ss_pred HHHHHhHHHHHHcCCCC
Q 009410 412 YVRLTSTECARIFNVYP 428 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~ 428 (535)
+ .++.++-.++++.+
T Consensus 288 ~--F~s~fG~~FY~~p~ 302 (344)
T KOG2902|consen 288 A--FTSFFGPDFYGLPD 302 (344)
T ss_pred h--hHhhcCcceecccc
Confidence 3 23456666777644
|
|
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.2e-08 Score=94.91 Aligned_cols=144 Identities=12% Similarity=0.099 Sum_probs=93.7
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q 009410 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (535)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 290 (535)
..+.+.+.++++.|+++|+++.+|+............+...| .. .+.|
T Consensus 168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g-------------------------------~~-ri~H 215 (324)
T TIGR01430 168 GGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLG-------------------------------AT-RIGH 215 (324)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcC-------------------------------ch-hcch
Confidence 445889999999999999999999964321111111111222 21 3567
Q ss_pred ccCH--HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCC
Q 009410 291 VMSM--DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 291 ~~~~--~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
+... +. +.++.+++.|+.+..||.++.....- ..+ ...++++++++|+++++|||+
T Consensus 216 g~~l~~~~-~~i~~l~~~gi~v~~cP~Sn~~l~~~-----------~~~----------~~~pi~~l~~~Gv~v~igTD~ 273 (324)
T TIGR01430 216 GVRALEDP-ELLKRLAQENITLEVCPTSNVALGVV-----------KSL----------AEHPLRRFLEAGVKVTLNSDD 273 (324)
T ss_pred hhhhccCH-HHHHHHHHcCceEEECCccccccccc-----------CCc----------ccChHHHHHHCCCEEEECCCC
Confidence 6665 33 68999999999999999863221100 000 112389999999999999996
Q ss_pred CCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 369 CAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
...... .+...+..++...++++.| |+++|.|+++...+.
T Consensus 274 ~~~~~~------------------~l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~~ 313 (324)
T TIGR01430 274 PAYFGS------------------YLTEEYEIAAKHAGLTEEE-LKQLARNALEGSFLS 313 (324)
T ss_pred CcccCC------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 543211 1112222334456899999 889999999988774
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-08 Score=93.14 Aligned_cols=243 Identities=19% Similarity=0.170 Sum_probs=129.9
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeec-CChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (535)
+||+|+|+... .. ..+.......+.++||++++.+.... .....+....+...+....++++..... ...+..
T Consensus 1 ~~D~H~H~~~~--~~--~~~~~~~l~~~~~~gv~~~v~~~~~~--~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~~~~~ 74 (251)
T cd01310 1 LIDTHCHLDFP--QF--DADRDDVLARAREAGVIKIIVVGTDL--KSSKRALELAKKYDNVYAAVGLHPHDADEHVDEDL 74 (251)
T ss_pred CEEeeeCCCch--hh--ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCeEEEEeeCcchhhcCCHHHH
Confidence 68999998754 11 12233445667789999999775431 1222222222222222223333322111 112335
Q ss_pred HHHHHHHHHcCCCEE-EEEeecCCCCc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSF-KFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~i-k~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+++.+.....+..++ ++.+++..... ...+.++.+++.|.+.++++.+|+.... .
T Consensus 75 ~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~--~------------------- 133 (251)
T cd01310 75 DLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAH--E------------------- 133 (251)
T ss_pred HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--H-------------------
Confidence 555555533455555 23333221111 3457789999999999999999986431 1
Q ss_pred cCChhhHHHHHHHHHHHHHhcC-CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEc
Q 009410 262 SRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (535)
.++++..+++ ....+.|...... +.++.+.+.|+.+..++... .
T Consensus 134 ------------~~~~l~~~~~~~~~~i~H~~~~~~-~~~~~~~~~g~~~~~~~~~~-------------~--------- 178 (251)
T cd01310 134 ------------DVLEILKEYGPPKRGVFHCFSGSA-EEAKELLDLGFYISISGIVT-------------F--------- 178 (251)
T ss_pred ------------HHHHHHHhcCCCCCEEEEccCCCH-HHHHHHHHcCCEEEeeeeec-------------c---------
Confidence 1233334443 3345667765433 56777777887776543310 0
Q ss_pred CCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 341 PPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 341 p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
.....+..+.+.+ -+++++||+ |+..... +...+ +....+...+..+....|++.+++.+..+.
T Consensus 179 ------~~~~~~~~~~~~~~~dril~~TD~-p~~~~~~------~~~~~-~~~~~~~~~~~~la~~~gl~~e~~~~~~~~ 244 (251)
T cd01310 179 ------KNANELREVVKEIPLERLLLETDS-PYLAPVP------FRGKR-NEPAYVKHVAEKIAELKGISVEEVAEVTTE 244 (251)
T ss_pred ------CCCHHHHHHHHhCChHHEEEcccC-CCCCCCC------CCCCC-CCChhHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 0001244444443 468999996 3322110 00000 111123334444444467999999999999
Q ss_pred HHHHHcC
Q 009410 419 ECARIFN 425 (535)
Q Consensus 419 ~~A~~lg 425 (535)
|++++||
T Consensus 245 N~~~ll~ 251 (251)
T cd01310 245 NAKRLFG 251 (251)
T ss_pred HHHHHhC
Confidence 9999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-07 Score=92.38 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+.+.+..+++.|+++|+++.+|+.+........+.+...| .. .+.|+
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g-------------------------------~~-~i~H~ 217 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLG-------------------------------AE-RIGHG 217 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcC-------------------------------Cc-ccchh
Confidence 37899999999999999999999964422222222221122 11 35677
Q ss_pred cCHH-HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 292 MSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 292 ~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
.... ..+.++.+++.|+.+..||..+...... ..+ ...+++.++++|+++++|||+.+
T Consensus 218 ~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~~-----------~~~----------~~~p~~~l~~~Gv~v~lgTD~~~ 276 (325)
T cd01320 218 IRAIEDPELVKRLAERNIPLEVCPTSNVQTGAV-----------KSL----------AEHPLRELLDAGVKVTINTDDPT 276 (325)
T ss_pred hccCccHHHHHHHHHcCCeEEECCCcccccccc-----------CCc----------ccChHHHHHHCCCEEEECCCCCc
Confidence 6652 1268999999999999999864321100 000 11338999999999999999754
Q ss_pred CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.... . +...+..++...++++.+ |..+|.|+++...+.
T Consensus 277 ~~~~-~-----------------~~~e~~~~~~~~~l~~~e-l~~~~~na~~~~f~~ 314 (325)
T cd01320 277 VFGT-Y-----------------LTDEYELLAEAFGLTEEE-LKKLARNAVEASFLS 314 (325)
T ss_pred ccCC-C-----------------HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 3221 1 111222333345799999 566889999987763
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=90.97 Aligned_cols=244 Identities=18% Similarity=0.147 Sum_probs=123.5
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecC-ChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-DEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (535)
|||+|+|+... ... .+.......+..+|+++++++.... . ....+....+..++.....+++...... ..+..
T Consensus 1 ~iD~H~Hl~~~--~~~--~~~~~~~~~~~~~Gv~~~v~~~~~~-~-~~~~~~~~~~~~~~i~~~~GihP~~~~~~~~~~~ 74 (252)
T TIGR00010 1 LIDAHCHLDFL--DFE--EDVEEVIERAKAAGVTAVVAVGTDL-E-DFLRALELAEKYPNVYAAVGVHPLDVDDDTKEDI 74 (252)
T ss_pred CEEeccCCCCh--hhc--cCHHHHHHHHHHcCCCEEEEecCCH-H-HHHHHHHHHHHCCCEEEEEEeCcchhhcCCHHHH
Confidence 69999998744 111 1334446777889999999774331 1 1122222222222323333333211111 12334
Q ss_pred HHHHHHHHHcCCCEEEEE-eecCCCCc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFKFF-MAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~-~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+++.+.++..+..+++.. +++..... ...+.+++.++.|.+.|+++.+|+.... ...++.+
T Consensus 75 ~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l------------- 139 (252)
T TIGR00010 75 KELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE--EDVLDIL------------- 139 (252)
T ss_pred HHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc--HHHHHHH-------------
Confidence 455554433344444332 22211111 0247888999999999999999996432 1112211
Q ss_pred cCChhhHHHHHHHHHHHHHhcC-CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEc
Q 009410 262 SRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (535)
.+.+ ....+.|....+. +.+..+.+.|+.+..+.... + .
T Consensus 140 ------------------~~~~~~~~~i~H~~~~~~-~~~~~~~~~g~~~~~~~~~~---~----------~-------- 179 (252)
T TIGR00010 140 ------------------REEKPKVGGVLHCFTGDA-ELAKKLLDLGFYISISGIVT---F----------K-------- 179 (252)
T ss_pred ------------------HhcCCCCCEEEEccCCCH-HHHHHHHHCCCeEeeceeEe---c----------C--------
Confidence 1221 2234668765443 66777777787776542210 0 0
Q ss_pred CCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 341 PPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 341 p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
....+.++++.. -+++++||....... .+.....+ ...+......+....|++++++.++++.
T Consensus 180 -------~~~~~~~~i~~~~~dril~~TD~p~~~~~-------~~~~~~~~-p~~i~~~~~~~a~~~g~~~~~~~~~~~~ 244 (252)
T TIGR00010 180 -------NAKSLREVVRKIPLERLLVETDSPYLAPV-------PYRGKRNE-PAFVRYTVEAIAEIKGMDVEELAQITTK 244 (252)
T ss_pred -------CcHHHHHHHHhCCHHHeEecccCCCCCCC-------CCCCCCCC-ChhHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 002244555543 479999996321110 01100000 0012222222222347999999999999
Q ss_pred HHHHHcCC
Q 009410 419 ECARIFNV 426 (535)
Q Consensus 419 ~~A~~lgl 426 (535)
||+++|++
T Consensus 245 N~~~~~~~ 252 (252)
T TIGR00010 245 NAKRLFGL 252 (252)
T ss_pred HHHHHhCc
Confidence 99999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.8e-07 Score=86.72 Aligned_cols=263 Identities=15% Similarity=0.094 Sum_probs=135.1
Q ss_pred cccccccccccccCCC---------Cc---hhhhHHHHHHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhcccccccc
Q 009410 106 GGIDPHTHLAMEFMGS---------ET---IDDFFSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYG 172 (535)
Q Consensus 106 GlID~H~H~~~~~~g~---------~~---~~~~~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (535)
|++.+|=|+...+.+. .. .+........+.++|||+++|...... .......+...+.+.+.+...|
T Consensus 1 g~~~~heh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G 80 (293)
T cd00530 1 GVTLTHEHLIIDSSGFVRDPPEVDDFDLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATG 80 (293)
T ss_pred CcccccCCeeecChhhccCcccccccchhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecc
Confidence 6778888877653221 11 122233455678899999999975422 2233333333333334455555
Q ss_pred eeeeeec---CChhhHHHHHH----HHHH----cC--CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-
Q 009410 173 FHMAITK---WDEVVSDEMEV----MVKE----KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG- 238 (535)
Q Consensus 173 ~~~~~~~---~~~~~~~~~~~----~~~~----~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~- 238 (535)
++..... ......+++.+ .... .+ +..++.............+.+++.++.|++.|+++.+|+...
T Consensus 81 ~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~~ 160 (293)
T cd00530 81 FYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSPAITPLEEKVLRAAARAQKETGVPISTHTQAGL 160 (293)
T ss_pred cCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCCCCCHHHHHHHHHHHHHHHHHCCeEEEcCCCCc
Confidence 5543211 00111122221 1111 11 122322211112222335678899999999999999998643
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc-CHHHHHHHHHHHHcCCcEEeccccc
Q 009410 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVS 317 (535)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~g~~v~~~~~~~ 317 (535)
......++.+.+.|+. ..++.+.|+. +.+ .+.+..+.+.|+.+..+....
T Consensus 161 ~~~~~~l~~l~~~g~~----------------------------~~~~vi~H~~~~~~-~~~~~~~~~~G~~i~~~~~~~ 211 (293)
T cd00530 161 TMGLEQLRILEEEGVD----------------------------PSKVVIGHLDRNDD-PDYLLKIAALGAYLEFDGIGK 211 (293)
T ss_pred cccHHHHHHHHHcCCC----------------------------hhheEEeCCCCCCC-HHHHHHHHhCCCEEEeCCCCc
Confidence 1222223222222221 1235788997 333 377888888997776553210
Q ss_pred eEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC--eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHH
Q 009410 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMH 395 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 395 (535)
.- ....++ .......++++++.|. .++++||.. ..... ++...+++... +.
T Consensus 212 ~~-----------------~~~~~~--~~~~~~~l~~~~~~~~~d~ill~TD~p-~~~~~------~~~~~~~~~~~-~~ 264 (293)
T cd00530 212 DK-----------------IFGYPS--DETRADAVKALIDEGYGDRLLLSHDVF-RKSYL------EKRYGGHGYDY-IL 264 (293)
T ss_pred cc-----------------ccCCCC--HHHHHHHHHHHHHCCCcCCEEEeCCcC-chhhh------hhccCCCChHH-HH
Confidence 00 000000 0112345788888886 679999953 32211 11111112222 22
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhHHHHHHc
Q 009410 396 LVWDTMVESGQISVTDYVRLTSTECARIF 424 (535)
Q Consensus 396 ~~~~~~~~~~~ls~~eal~~~T~~~A~~l 424 (535)
..+...+...|++.+++.+..|.||+++|
T Consensus 265 ~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 265 TRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 22224445667999999999999999976
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-06 Score=87.25 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=90.2
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q 009410 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (535)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 290 (535)
..+.+.+.++++.|++.|+++.+|+..........+.+... |.. .+.|
T Consensus 178 ~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~l-------------------------------g~~-ri~H 225 (340)
T PRK09358 178 GFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDEL-------------------------------GAE-RIGH 225 (340)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHc-------------------------------CCc-ccch
Confidence 35788999999999999999999996432111111111111 222 2567
Q ss_pred ccCHH-HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 291 VMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 291 ~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
+.... ..+.++.+++.|+.+..||+++....... .+ ...++++++++|+++++|||+.
T Consensus 226 g~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~-----------~~----------~~~pi~~l~~~Gv~v~lgTD~~ 284 (340)
T PRK09358 226 GVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVP-----------SL----------AEHPLKTLLDAGVRVTINTDDP 284 (340)
T ss_pred hhhhccCHHHHHHHHHcCCeEEECCCccccccccC-----------Cc----------ccChHHHHHHCCCEEEECCCCC
Confidence 76652 12679999999999999998632211100 00 1133899999999999999975
Q ss_pred CCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 370 AFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
..... . +...+..+....+++++++ ..++.|+.+.-.+
T Consensus 285 ~~~~~-~-----------------l~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~ 322 (340)
T PRK09358 285 LVFGT-T-----------------LTEEYEALAEAFGLSDEDL-AQLARNALEAAFL 322 (340)
T ss_pred cccCC-C-----------------HHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCC
Confidence 43211 1 1122223333457999994 6678888877655
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-06 Score=82.11 Aligned_cols=249 Identities=18% Similarity=0.171 Sum_probs=135.3
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChhhHH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (535)
+||+|+|+..... ....++.......+...||..++..+.... .... ........+..+..+|+|+.... ..+..+
T Consensus 3 ~iDtH~Hl~~~~~-~~~~~d~~~vl~~a~~~gv~~~~~~~~~~~-~~~~-~~~l~~~~~~v~~~~GiHP~~~~-~~~~~~ 78 (265)
T PRK10812 3 LVDSHCHLDGLDY-QSLHKDVDDVLAKAAARDVKFCLAVATTLP-GYRH-MRDLVGERDNVVFSCGVHPLNQD-EPYDVE 78 (265)
T ss_pred eEEeccCCCCccc-hhhhcCHHHHHHHHHHcCCCEEEEeCCCHH-HHHH-HHHHHhhCCCeEEEEEeCCCCCC-ChhHHH
Confidence 7999999964200 011234445577788899988875532211 1222 22222222334445566553322 223345
Q ss_pred HHHHHHHHcCCCEE-EEEeecCC---CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009410 187 EMEVMVKEKGINSF-KFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (535)
Q Consensus 187 ~~~~~~~~~g~~~i-k~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (535)
.+.++.+...+..+ .+.+++.. ....-.+.+++.++.|.+.++++.+|+.... .+.++.+.+.+..
T Consensus 79 ~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~~~~-------- 148 (265)
T PRK10812 79 ELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREEKVT-------- 148 (265)
T ss_pred HHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhhcCC--------
Confidence 55555533344444 34445431 1112356789999999999999999985432 1222222211110
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
..+. +.|+.+.+. +.++.+.+.|+.+...... .+
T Consensus 149 --------------------~~~~-v~H~fsG~~-~~a~~~~~~G~~is~~g~~-------------------t~----- 182 (265)
T PRK10812 149 --------------------DCGG-VLHCFTEDR-ETAGKLLDLGFYISFSGIV-------------------TF----- 182 (265)
T ss_pred --------------------CCCE-EEEeecCCH-HHHHHHHHCCCEEEECeee-------------------ec-----
Confidence 1123 578877664 7788888888776653221 00
Q ss_pred CCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHH
Q 009410 343 IRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTEC 420 (535)
Q Consensus 343 ~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~ 420 (535)
.....++++++.+ -++.+.||+ |+.... ++..-++. -..+...++.+.+-.|++.+++.+..+.|+
T Consensus 183 ----~~~~~~~~~~~~ipldrlLlETD~-P~~~p~------~~~g~~n~-P~~i~~v~~~ia~l~g~~~eei~~~~~~N~ 250 (265)
T PRK10812 183 ----RNAEQLRDAARYVPLDRLLVETDS-PYLAPV------PHRGKENQ-PAMVRDVAEYMAVLKGVSVEELAQVTTDNF 250 (265)
T ss_pred ----CccHHHHHHHHhCChhhEEEecCC-CCCCCc------CCCCCCCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0013466666665 469999995 443221 22211110 012333333333345799999999999999
Q ss_pred HHHcCCC
Q 009410 421 ARIFNVY 427 (535)
Q Consensus 421 A~~lgl~ 427 (535)
.++|+++
T Consensus 251 ~~lf~~~ 257 (265)
T PRK10812 251 ARLFHID 257 (265)
T ss_pred HHHHCCC
Confidence 9999984
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-06 Score=80.02 Aligned_cols=260 Identities=14% Similarity=0.100 Sum_probs=142.3
Q ss_pred cccccccccccccCCCC--------chhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHh-cccccccceeee
Q 009410 106 GGIDPHTHLAMEFMGSE--------TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA-KNSCMDYGFHMA 176 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~--------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 176 (535)
|+..+|=|+...+.+.. ..+.....+..+.+.|+.|++|+....-+.....+.+..+.. -+.....|++..
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~ 86 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 86 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCC
Confidence 78889999866532211 122233344556789999999997555444444444444433 233333444332
Q ss_pred eec------CC-hhhHHHHHHHHHHcC-------CCEE-EEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009410 177 ITK------WD-EVVSDEMEVMVKEKG-------INSF-KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (535)
Q Consensus 177 ~~~------~~-~~~~~~~~~~~~~~g-------~~~i-k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 241 (535)
... .+ ++..+.+.+-+ ..| +..+ ++..++........+.+++...++.+.|.++.+|.......
T Consensus 87 ~~~p~~~~~~~~e~la~~~i~ei-~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g 165 (292)
T PRK09875 87 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 165 (292)
T ss_pred ccCCHHHhcCCHHHHHHHHHHHH-HHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccch
Confidence 211 11 22222222222 122 2345 34333222222335667888888889999999997543222
Q ss_pred HHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEee
Q 009410 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (535)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 321 (535)
.+.++.+.+.|+. -.++.+.|.......+.+..+.+.|+.+-.+...
T Consensus 166 ~e~l~il~e~Gvd----------------------------~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g----- 212 (292)
T PRK09875 166 LEQLALLQAHGVD----------------------------LSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIG----- 212 (292)
T ss_pred HHHHHHHHHcCcC----------------------------cceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCC-----
Confidence 2333333333332 1268899997555557888888999888765321
Q ss_pred CcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHH
Q 009410 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWD 399 (535)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 399 (535)
.. .+ .|. ......+..+.+.| -++.+++|........ +|.. .|+..-+..++.
T Consensus 213 -----------~~-~~--~pd---~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~------~~gg--~G~~~i~~~~ip 267 (292)
T PRK09875 213 -----------KN-SY--YPD---EKRIAMLHALRDRGLLNRVMLSMDITRRSHLK------ANGG--YGYDYLLTTFIP 267 (292)
T ss_pred -----------Cc-cc--CCH---HHHHHHHHHHHhcCCCCeEEEeCCCCCccccc------ccCC--CChhHHHHHHHH
Confidence 00 00 110 01135677788886 5689999964321110 1221 144444444443
Q ss_pred HHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 400 TMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 400 ~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
.+. ..|+|.+++=++...||+++|+
T Consensus 268 ~L~-~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 268 QLR-QSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHH-HcCCCHHHHHHHHHHCHHHHhC
Confidence 333 4479999999999999999874
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-06 Score=78.78 Aligned_cols=243 Identities=19% Similarity=0.150 Sum_probs=140.0
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecC--Chhh
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW--DEVV 184 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 184 (535)
|||+|+|+... ...++.......+...||+.+...+.... .....-......+..+...|+|+.. .. .++.
T Consensus 3 liDtH~HL~~~----~~~~d~~~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~ 75 (256)
T COG0084 3 LIDTHCHLDFE----EFDEDRDEVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLD-ADEHSEED 75 (256)
T ss_pred cEEeeeCCCch----hhcCCHHHHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHH
Confidence 79999999853 23334444567788899999986643322 2223333333444556666666644 22 2456
Q ss_pred HHHHHHHHHH-cCCCEEE-EEeecCCCCc----CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccc
Q 009410 185 SDEMEVMVKE-KGINSFK-FFMAYKGSFM----INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (535)
Q Consensus 185 ~~~~~~~~~~-~g~~~ik-~~~~~~~~~~----~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~ 258 (535)
.+.+.+++.. ..+..+. +.++|.-... .-.+.+++-++.|++.++|+.+|+.... .+..+.+
T Consensus 76 ~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~--~d~~~iL---------- 143 (256)
T COG0084 76 LEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH--EDTLEIL---------- 143 (256)
T ss_pred HHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH--HHHHHHH----------
Confidence 6677777642 3444444 2233332111 1356789999999999999999996542 1222222
Q ss_pred ccccCChhhHHHHHHHHHHHHHhcC-CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 259 HALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
+..+ ..-.+.||.+.+. +..+.+.+.|..+...... .|..
T Consensus 144 ---------------------~~~~~~~~gi~HcFsGs~-e~a~~~~d~G~yisisG~i-------------tfk~---- 184 (256)
T COG0084 144 ---------------------KEEGAPVGGVLHCFSGSA-EEARKLLDLGFYISISGIV-------------TFKN---- 184 (256)
T ss_pred ---------------------HhcCCCCCEEEEccCCCH-HHHHHHHHcCeEEEECcee-------------ecCC----
Confidence 2222 1235789988876 8888888899776654432 0110
Q ss_pred EEcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~ 415 (535)
+ ..++++++. =-++++-||+ |+.... ||..-.+ --..+...+..+.+--+++++++-+.
T Consensus 185 --------a---~~~~ev~~~iPldrLL~ETDs-Pyl~P~------p~rGkrN-eP~~v~~v~~~iAelk~~~~eeva~~ 245 (256)
T COG0084 185 --------A---EKLREVARELPLDRLLLETDA-PYLAPV------PYRGKRN-EPAYVRHVAEKLAELKGISAEEVAEI 245 (256)
T ss_pred --------c---HHHHHHHHhCCHhHeEeccCC-CCCCCc------CCCCCCC-CchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0 123333332 1238899994 543332 3433222 00123333334444557999999999
Q ss_pred HhHHHHHHcCC
Q 009410 416 TSTECARIFNV 426 (535)
Q Consensus 416 ~T~~~A~~lgl 426 (535)
.|.|.-++|++
T Consensus 246 t~~N~~~lf~~ 256 (256)
T COG0084 246 TTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.4e-06 Score=78.75 Aligned_cols=244 Identities=12% Similarity=0.088 Sum_probs=130.8
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee-cCChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (535)
|||+|+|+... . ..++.......+...||..++..+.... .... ........+..+..+|+|+... ...++..
T Consensus 1 ~iDtH~HL~~~---~-~~~d~~~vl~~a~~~gv~~~i~~~~~~~-~~~~-~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (258)
T PRK10425 1 MFDIGVNLTSS---Q-FAKDRDDVVARAFAAGVNGMLITGTNLR-ESQQ-AQKLARQYPSCWSTAGVHPHDSSQWQAATE 74 (258)
T ss_pred CEEeeeCcCCh---h-hhccHHHHHHHHHHCCCCEEEEeCCCHH-HHHH-HHHHHHhCCCEEEEEEeCcCccccCCHHHH
Confidence 68999998643 1 1234555577788899988875543211 1222 2222222333444566665332 2223445
Q ss_pred HHHHHHHHHcCCCEEE-EEeecCCC---CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFK-FFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+.+.++.+.....++. +.+++... ...-.+.+++.++.|.++++|+.+|+.... .+.++.+...
T Consensus 75 ~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~---------- 142 (258)
T PRK10425 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPW---------- 142 (258)
T ss_pred HHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHh----------
Confidence 5555555322222333 33343211 111146789999999999999999996432 2222221110
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcC
Q 009410 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (535)
. ...+-.+.|+.+.+. +.++.+.+.|..+......- .
T Consensus 143 ------------------~-~~~~~~i~H~fsG~~-~~~~~~l~~G~~~si~g~i~----------------------~- 179 (258)
T PRK10425 143 ------------------L-DKLPGAVLHCFTGTR-EEMQACLARGLYIGITGWVC----------------------D- 179 (258)
T ss_pred ------------------c-cCCCCeEEEecCCCH-HHHHHHHHCCCEEEECceee----------------------c-
Confidence 0 011113579988776 78888888887776543210 0
Q ss_pred CCCCcccHHHHHHHHhc-C-CeEEEeCCCCCCChhhhhcCCCCcc-------cCcchHHHHHHHHHHHHHhcCCCCHHHH
Q 009410 342 PIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFR-------KIPNGIEERMHLVWDTMVESGQISVTDY 412 (535)
Q Consensus 342 ~~r~~~~~~~~~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~-------~~~~g~~~~l~~~~~~~~~~~~ls~~ea 412 (535)
..+ ...++++++. . -.+++-||+ |+.... +|. +-|. .+...+..+.+--+++.+++
T Consensus 180 ~~~----~~~~~~~~~~ipldrlLlETDa-P~l~P~------~~~~~~~~~~n~P~----~i~~v~~~iA~l~~~~~~~v 244 (258)
T PRK10425 180 ERR----GLELRELLPLIPAERLLLETDA-PYLLPR------DLTPKPASRRNEPA----FLPHILQRIAHWRGEDAAWL 244 (258)
T ss_pred ccc----cHHHHHHHHhCChHHEEEeccC-CCCCCC------CcCCCCCCCCCCcH----HHHHHHHHHHHHHCcCHHHH
Confidence 000 0123333332 1 248899995 443221 121 1122 33344444555557999999
Q ss_pred HHHHhHHHHHHcCC
Q 009410 413 VRLTSTECARIFNV 426 (535)
Q Consensus 413 l~~~T~~~A~~lgl 426 (535)
.+..+.|.-++||+
T Consensus 245 ~~~~~~N~~~lf~~ 258 (258)
T PRK10425 245 AATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999999874
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-06 Score=77.90 Aligned_cols=244 Identities=18% Similarity=0.164 Sum_probs=126.4
Q ss_pred cccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcc-cccccceeeeeecC-ChhhH
Q 009410 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVS 185 (535)
Q Consensus 108 ID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 185 (535)
||+|+|+... ...++.......+...|++.++.+..... ... .........+. ....+|+|+..... ..+..
T Consensus 1 iD~H~Hl~~~----~~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~-~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (255)
T PF01026_consen 1 IDAHCHLDSP----RFEEDRPEVLERAREAGVSAIIIVSTDPE-DWE-RVLELASQYPDRVYPALGIHPWEAHEVNEEDL 74 (255)
T ss_dssp EEEEE-TTSG----GGTTTHHHHHHHHHHTTEEEEEEEESSHH-HHH-HHHHHHHHTTTEEEEEE---GGGGGGHSHHHH
T ss_pred CcCccCCCCh----hhCcCHHHHHHHHHHcCCCEEEEcCCCHH-HhH-HHHHHHhcCCCeEEEEecCCcchhhhhhHHHH
Confidence 7999999763 11223444467788999999986643321 122 22222222222 45556666533322 23344
Q ss_pred HHHHHH--HHHcCCCEEE-EEeecCCCC----cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccc
Q 009410 186 DEMEVM--VKEKGINSFK-FFMAYKGSF----MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (535)
Q Consensus 186 ~~~~~~--~~~~g~~~ik-~~~~~~~~~----~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~ 258 (535)
+.+.++ .......++. +.+++.-.. ..-.+.+++.++.|.++++++.+|+.... .+.++.+.+.+.
T Consensus 75 ~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~--~~~l~il~~~~~----- 147 (255)
T PF01026_consen 75 EELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH--EELLEILKEYGP----- 147 (255)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH--HHHHHHHHHTTG-----
T ss_pred HHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH--HHHHHHHHhccc-----
Confidence 556555 3233444443 334542111 12356789999999999999999997632 222322222211
Q ss_pred ccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeE
Q 009410 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (535)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (535)
.+. ..+.|+.+.+. +.++.+.+.|+.++..+.. . +.
T Consensus 148 -----------------------~~~-~~i~H~f~g~~-~~~~~~~~~g~~~S~~~~~---------~----~~------ 183 (255)
T PF01026_consen 148 -----------------------PNL-RVIFHCFSGSP-EEAKKFLDLGCYFSFSGAI---------T----FK------ 183 (255)
T ss_dssp -----------------------GTS-EEEETT--S-H-HHHHHHHHTTEEEEEEGGG---------G----ST------
T ss_pred -----------------------cce-eEEEecCCCCH-HHHHHHHhcCceEEecccc---------c----cc------
Confidence 111 45789977765 6777777788666554432 0 00
Q ss_pred EcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009410 339 MSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLT 416 (535)
Q Consensus 339 ~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~ 416 (535)
. .....++++. .-++.+.||. |+.... ++...++ .-..+...++.+.+..+++++++.+..
T Consensus 184 ------~---~~~~~~~~~~ip~drillETD~-P~~~~~------~~~~~~~-~p~~i~~~~~~la~~~~~~~e~~~~~~ 246 (255)
T PF01026_consen 184 ------N---SKKVRELIKAIPLDRILLETDA-PYLAPD------PYRGKPN-EPSNIPKVAQALAEIKGISLEELAQII 246 (255)
T ss_dssp ------T---SHHHHHHHHHS-GGGEEEE-BT-TSSECT------TSTTSE---GGGHHHHHHHHHHHHTSTHHHHHHHH
T ss_pred ------c---cHHHHHHHhcCChhhEEEcCCC-CcCCcc------ccCCCCC-ChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 0223333332 2359999994 443221 2222111 001233334344444569999999999
Q ss_pred hHHHHHHcC
Q 009410 417 STECARIFN 425 (535)
Q Consensus 417 T~~~A~~lg 425 (535)
+.|..++||
T Consensus 247 ~~N~~r~f~ 255 (255)
T PF01026_consen 247 YENAKRLFG 255 (255)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999999886
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-05 Score=73.21 Aligned_cols=248 Identities=15% Similarity=0.135 Sum_probs=130.8
Q ss_pred eecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeec-CCh
Q 009410 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDE 182 (535)
Q Consensus 104 lPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 182 (535)
.+.+||+|+|+... ...++.......+...||+.++.++.... .....++ .....+..+..+|+|+.... ...
T Consensus 2 ~~~~iD~HcHl~~~----~~~~~~~~~l~~a~~~gv~~~~~~~~~~~-~~~~~~~-l~~~~~~v~~~~GiHP~~~~~~~~ 75 (258)
T PRK11449 2 ICRFIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEAE-NFARVLA-LAERYQPLYAALGLHPGMLEKHSD 75 (258)
T ss_pred CceEEEeccCCCCh----hhccCHHHHHHHHHHCCCCEEEEeeCCHH-HHHHHHH-HHHhCCCEEEEEeeCcCccccCCH
Confidence 35689999998643 11223334466677889999886643211 2222222 22223334445566653322 223
Q ss_pred hhHHHHHHHHHHc--CCCEEE-EEeecCCCC---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009410 183 VVSDEMEVMVKEK--GINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (535)
Q Consensus 183 ~~~~~~~~~~~~~--g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (535)
+..+.+.++.... .+.++. +.+++.... ..-.+.+.+.++.|.++++++.+|+.... ....+.+...+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~--~~~~~il~~~~~--- 150 (258)
T PRK11449 76 VSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAMHLKRHDL--- 150 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--HHHHHHHHhcCC---
Confidence 3445555444221 222332 222332111 12356789999999999999999996532 222222211110
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccce
Q 009410 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (535)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (535)
..+ .+.|+.+.+. +..+.+.+.|..+...... . +.
T Consensus 151 --------------------------~~~-~i~H~fsG~~-~~a~~~l~~G~~iS~~g~i---------t----~~---- 185 (258)
T PRK11449 151 --------------------------PRT-GVVHGFSGSL-QQAERFVQLGYKIGVGGTI---------T----YP---- 185 (258)
T ss_pred --------------------------CCC-eEEEcCCCCH-HHHHHHHHCCCEEEeCccc---------c----cc----
Confidence 112 3678888775 7888888888766543221 0 00
Q ss_pred eEEcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHH
Q 009410 337 YVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVR 414 (535)
Q Consensus 337 ~~~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~ 414 (535)
....++++++. --++++.||++ +.... +|..-++ .-..+...++.+...-+++++++.+
T Consensus 186 -----------~~~~~~~~~~~ipldriL~ETD~P-~l~p~------~~~~~~n-~p~~~~~~~~~ia~l~~~~~~el~~ 246 (258)
T PRK11449 186 -----------RASKTRDVIAKLPLASLLLETDAP-DMPLN------GFQGQPN-RPEQAARVFDVLCELRPEPADEIAE 246 (258)
T ss_pred -----------CcHHHHHHHHhCChhhEEEecCCC-CCCCC------CCCCCCC-CChHHHHHHHHHHHHHCcCHHHHHH
Confidence 00223443332 12489999954 32211 2222211 0012333333434445799999999
Q ss_pred HHhHHHHHHcCC
Q 009410 415 LTSTECARIFNV 426 (535)
Q Consensus 415 ~~T~~~A~~lgl 426 (535)
..+.|..++||+
T Consensus 247 ~~~~N~~~lf~~ 258 (258)
T PRK11449 247 VLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHhCc
Confidence 999999999874
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-05 Score=74.09 Aligned_cols=268 Identities=15% Similarity=0.113 Sum_probs=136.1
Q ss_pred cccccccccccccCCCC------------chhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHh-cccccccc
Q 009410 106 GGIDPHTHLAMEFMGSE------------TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA-KNSCMDYG 172 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~------------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 172 (535)
|+..+|=|+...+.+.. ..+.....++.+.+.|+.|++|+.....+.....+....+.. -+.....|
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG 86 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTG 86 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCC
Confidence 77888888876532210 112222344556789999999996554443344444444333 23333444
Q ss_pred eeeeeecCC-------hhhHHHHHHHHHHcCC-------CEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 173 FHMAITKWD-------EVVSDEMEVMVKEKGI-------NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 173 ~~~~~~~~~-------~~~~~~~~~~~~~~g~-------~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
++.....+. ++..+.+.+-+ ..|. ..+|...++..........++++..++.+-|.++.+|....
T Consensus 87 ~y~~~~~p~~~~~~s~e~la~~~i~Ei-~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g 165 (308)
T PF02126_consen 87 FYKEPFYPEWVREASVEELADLFIREI-EEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRG 165 (308)
T ss_dssp E-SGGCSCHHHHTSHHHHHHHHHHHHH-HT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTT
T ss_pred CCccccCChhhhcCCHHHHHHHHHHHH-HhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCC
Confidence 443221111 12222222222 3444 36777655432222335567777888888899999999665
Q ss_pred h-hHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccc
Q 009410 239 D-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (535)
Q Consensus 239 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~ 317 (535)
. ...+.++.+.+.|+.. .++.+.|+......+.+..+.+.|+.+-......
T Consensus 166 ~~~~~e~~~il~e~Gv~~----------------------------~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~ 217 (308)
T PF02126_consen 166 TRMGLEQLDILEEEGVDP----------------------------SRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGR 217 (308)
T ss_dssp GTCHHHHHHHHHHTT--G----------------------------GGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-
T ss_pred CcCHHHHHHHHHHcCCCh----------------------------hHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcc
Confidence 4 4455566665555532 3578899986555677888888998887654421
Q ss_pred eEeeCcccccCcCccccceeEEcCCCCCc---ccHHHHHHHHhcCC--eEEEeCCCCCCChhhhhcCCCCcccCcchHHH
Q 009410 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRAS---GHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEE 392 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~---~~~~~~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (535)
.++ ..+ .+|..... .....+..+.++|- +++++.|.... .... .+..-+.|...
T Consensus 218 ~~~-g~~--------------~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k-~~~~-----~~gg~g~~~~~ 276 (308)
T PF02126_consen 218 EFS-GKD--------------KNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRK-SRLY-----RYGGGGYGYIY 276 (308)
T ss_dssp B-T-TTT--------------TCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESE-EGSS-----SCCHHHHTTTH
T ss_pred ccc-Ccc--------------cCccCCCCCHHHHHHHHHHHHHcCCcCcEEEecccccc-cccc-----ccCCCCccHHH
Confidence 110 000 00001111 11246778888875 58999984321 0100 11100001111
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHc
Q 009410 393 RMHLVWDTMVESGQISVTDYVRLTSTECARIF 424 (535)
Q Consensus 393 ~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~l 424 (535)
-+..++- ..++.|+|.+++=++...||+++|
T Consensus 277 i~~~fiP-~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 277 ILTRFIP-RLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp HHHTHHH-HHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCHHHHHHHHHHCHHHHc
Confidence 1122222 223557999999999999999987
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00041 Score=61.82 Aligned_cols=234 Identities=14% Similarity=0.145 Sum_probs=126.2
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC--ChHHHHHHHHH-----------Hhcccccccce
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEK-----------KAKNSCMDYGF 173 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~-----------~~~~~~~~~~~ 173 (535)
+||+|+|+..- + .++ +.....+||.+++.+...+.. +......-+.+ .+-+..+.+|.
T Consensus 2 ~iD~HiH~d~r--~---~eD----lekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv 72 (254)
T COG1099 2 YIDSHIHLDVR--G---FED----LEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV 72 (254)
T ss_pred ccccccccccc--c---HHH----HHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence 69999998754 2 222 345566788888765332222 11111111111 11223444555
Q ss_pred eeeeec-CChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009410 174 HMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (535)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (535)
+..... ..++..+++..+....++..+... +.........+.++.-++.|+++++|+.+|.+..+-.
T Consensus 73 HPr~iP~e~~~~l~~L~~~l~~e~VvAiGEi-GLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~----------- 140 (254)
T COG1099 73 HPRAIPPELEEVLEELEELLSNEDVVAIGEI-GLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKK----------- 140 (254)
T ss_pred CCCCCCchHHHHHHHHHhhcccCCeeEeeec-ccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcch-----------
Confidence 554332 234556666665533334444321 1111111235678899999999999999998654321
Q ss_pred CCCcccccccCChhhHHHHHHHHHHHHHhcCC---CEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCc
Q 009410 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNT---PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 329 (535)
+.+.+.++.....+. .+.+.|++. +.++.+-..++++-.+.+|.-
T Consensus 141 -----------------e~t~~ildi~~~~~l~~~lvvIDH~N~----etv~~vld~e~~vGlTvqPgK----------- 188 (254)
T COG1099 141 -----------------EATSKILDILIESGLKPSLVVIDHVNE----ETVDEVLDEEFYVGLTVQPGK----------- 188 (254)
T ss_pred -----------------hHHHHHHHHHHHcCCChhheehhcccH----HHHHHHHhccceEEEEecCCc-----------
Confidence 223344444444443 356778755 667767777777655544310
Q ss_pred CccccceeEEcCCCCCcccHHHHHHHHhcC-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCC
Q 009410 330 DFVTAAKYVMSPPIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQIS 408 (535)
Q Consensus 330 ~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls 408 (535)
+.+ .+++.=..+-| -++.+.||......+ ++. ++...-. ++..|++
T Consensus 189 ---------lt~-------~eAveIV~ey~~~r~ilnSD~~s~~sd-------~la---------vprtal~-m~~~gv~ 235 (254)
T COG1099 189 ---------LTV-------EEAVEIVREYGAERIILNSDAGSAASD-------PLA---------VPRTALE-MEERGVG 235 (254)
T ss_pred ---------CCH-------HHHHHHHHHhCcceEEEeccccccccc-------chh---------hhHHHHH-HHHhcCC
Confidence 000 02222222334 678999995433222 121 2222211 2345799
Q ss_pred HHHHHHHHhHHHHHHcCC
Q 009410 409 VTDYVRLTSTECARIFNV 426 (535)
Q Consensus 409 ~~eal~~~T~~~A~~lgl 426 (535)
.+++-+-+-.|+-+++|+
T Consensus 236 ~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 236 EEEIEKVVRENALSFYGL 253 (254)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999999999886
|
|
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00054 Score=64.34 Aligned_cols=242 Identities=14% Similarity=0.063 Sum_probs=126.4
Q ss_pred HHHHHhCCcEEEeccccCCCCChHHHHHH-HHHHhcccccccceeeeeecC------C-hhhHHHHHHHHHHc------C
Q 009410 131 QAAALAGGTTMHIDFVIPINGSLTAGFEA-YEKKAKNSCMDYGFHMAITKW------D-EVVSDEMEVMVKEK------G 196 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~------g 196 (535)
.....+.|+-|++|+....-+.....+.. ..+.+-+.....|++.....+ . ++..+.+.+-+++. .
T Consensus 54 ~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ik 133 (316)
T COG1735 54 LKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIK 133 (316)
T ss_pred HHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEeccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCccc
Confidence 34457799999999975544423333333 333333333334443322111 1 22333333333221 3
Q ss_pred CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHH
Q 009410 197 INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (535)
Q Consensus 197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 276 (535)
+..+|..-.+.+........++++..+.++-|.|+.+|.+......+.++.+.+.|+..
T Consensus 134 AGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~egvdl--------------------- 192 (316)
T COG1735 134 AGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDL--------------------- 192 (316)
T ss_pred cceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHHHHcCCCh---------------------
Confidence 55667655555433444566778888888889999999977655555566655555421
Q ss_pred HHHHhcCCCEEEEEcc-CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCccc-HHHHHH
Q 009410 277 RLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH-NKALQA 354 (535)
Q Consensus 277 ~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~~~~ 354 (535)
.++.+.|+. +.+...-.+.++.+|+.+-....-- .+..|. ++ ...+.+
T Consensus 193 -------~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~iG~-------------------d~y~pd----~~r~~~~~~ 242 (316)
T COG1735 193 -------RKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRIGK-------------------DKYYPD----EDRIAPLLE 242 (316)
T ss_pred -------hHeeEeccCCCCChHHHHHHHHhcCceEEecccCc-------------------cccCcH----HHhhhhHHH
Confidence 257899998 6666677777888897765443311 111111 11 123555
Q ss_pred HHhcCCe--EEEeCCCCCCChhhhhcCCCCcccCcc-hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 355 ALATGIL--QLVGTDHCAFNSTQKAFGIDDFRKIPN-GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 355 ~l~~Gv~--~~lgtD~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
+.++|.. +.++-|......+.... ......++ |.-.-+...+-.+ +..|++.+++=++.--||+++|..
T Consensus 243 l~~~gy~d~i~ls~d~~~~~~~~~~~--~~~~~~~~~g~~~I~~~fIP~L-k~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 243 LVARGYADLILLSHDDICLSDDVFLK--SMLKANGGWGYGYILNDFIPRL-KRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred HHHhhHhhheecccchhhhhhhHHHH--hhhhhcCCcccchhhHhhHHHH-HHcCCCHHHHHHHHhhCHHHHhcc
Confidence 6666644 55552322222221100 00011111 2222222333222 355799666666777999999975
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0085 Score=59.63 Aligned_cols=148 Identities=13% Similarity=0.022 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHhcC--CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 212 INDELLIEGFKRCKSLG--ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
.+...+..++..|++.| +++.+|+...... .......+..++.+ +.. .+.
T Consensus 176 ~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~-----------------------~~~~~~~v~~al~l----g~~-RIG 227 (345)
T cd01321 176 RPLLDFLPQLLWFPKQCAEIPFFFHAGETNGD-----------------------GTETDENLVDALLL----NTK-RIG 227 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEeecCCCcCC-----------------------CCCChhHHHHHHHh----CCC-cCc
Confidence 35788899999999999 9999999543200 00000112222222 111 244
Q ss_pred EccCH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCC
Q 009410 290 HVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 290 H~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
|.... +..++++.++++++++..||+++...-.-.. ...-+++.++++|++++++||.
T Consensus 228 HG~~~~~dp~ll~~l~~~~I~lEvCPtSN~~~~~v~~---------------------~~~HPl~~ll~~Gv~vtinTDD 286 (345)
T cd01321 228 HGFALPKHPLLMDLVKKKNIAIEVCPISNQVLGLVSD---------------------LRNHPAAALLARGVPVVISSDD 286 (345)
T ss_pred cccccCcCHHHHHHHHHcCCeEEECcchhhhhccccc---------------------hhhChHHHHHHCCCeEEEeCCC
Confidence 44332 1227899999999999999997433111110 1123489999999999999997
Q ss_pred CCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCC---CCHHHHHHHHhHHHHHHcCC
Q 009410 369 CAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQ---ISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~---ls~~eal~~~T~~~A~~lgl 426 (535)
....... .+...+..+....+ ++.++.. ..+.|+.++-.+
T Consensus 287 p~~f~t~-----------------~l~~Ey~~~~~~~g~~~l~~~~l~-~l~~nsi~~sF~ 329 (345)
T cd01321 287 PGFWGAK-----------------GLSHDFYQAFMGLAPADAGLRGLK-QLAENSIRYSAL 329 (345)
T ss_pred cchhCCC-----------------CchHHHHHHHHHhccCCCCHHHHH-HHHHHHHHHHCC
Confidence 6532110 01111212333445 9988865 445666655544
|
|
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0041 Score=62.03 Aligned_cols=140 Identities=12% Similarity=0.128 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCh---hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
..+..+++.|++.|+++.+|+... .......+.+...| .. .+.|+
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~-------------------------------~~-RIGHG 253 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLK-------------------------------VK-RIGHG 253 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhC-------------------------------CC-ccccc
Confidence 568899999999999999999542 11111111111111 11 24555
Q ss_pred cCH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 292 MSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 292 ~~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
... ...+.++.++++++++..||+++...-.-. ....-+++.++++|++++++||...
T Consensus 254 ~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~~~v~---------------------~~~~HPi~~l~~~Gv~v~InTDDp~ 312 (362)
T PTZ00124 254 IRVAESQELIDMVKEKDILLEVCPISNVLLNNAK---------------------SMDTHPIRKLYDAGVKVSVNSDDPG 312 (362)
T ss_pred cccCCCHHHHHHHHHcCCeEEECCcchhhhhcCC---------------------chhhHHHHHHHHCCCcEEEeCCCcc
Confidence 443 122789999999999999999743211100 0112458999999999999999765
Q ss_pred CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
.... .+...+..+....|++.++..++ +.|+.+.-.+
T Consensus 313 ~~~t------------------~l~~Ey~~~~~~~gls~~~l~~l-~~nai~asF~ 349 (362)
T PTZ00124 313 MFLT------------------NINDDYEELYTHLNFTLADFMKM-NEWALEKSFL 349 (362)
T ss_pred ccCC------------------ChhHHHHHHHHHcCCCHHHHHHH-HHHHHHHhcC
Confidence 3221 12222333445678999998876 5555444333
|
|
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=59.92 Aligned_cols=80 Identities=21% Similarity=0.170 Sum_probs=53.7
Q ss_pred ecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHH----HHHHcCCCCcccccccCChhhHHHHHHHHHHHHH
Q 009410 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQK----RMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280 (535)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (535)
+.++...-....+.+.+.. .+.+..+..|++++.....+.- .-..+| ...+..+|...+.+.+.+++
T Consensus 56 sddg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g--------~~L~G~cEs~~~~rd~lLak 126 (142)
T PF12890_consen 56 SDDGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLG--------VYLKGNCESVQCARDVLLAK 126 (142)
T ss_pred ecCCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhC--------CcCCCcchHHHHHHHHHhhh
Confidence 3344444456777778887 7889999999987754332221 111122 11344678888999999999
Q ss_pred hcCCCEEEEEccC
Q 009410 281 FVNTPLYVVHVMS 293 (535)
Q Consensus 281 ~~~~~~~~~H~~~ 293 (535)
..+.+.|+.|.++
T Consensus 127 ~~g~~yhVchvst 139 (142)
T PF12890_consen 127 ATGCHYHVCHVST 139 (142)
T ss_pred ccCCcEEEEEEec
Confidence 9999999999876
|
|
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0071 Score=58.19 Aligned_cols=186 Identities=15% Similarity=0.095 Sum_probs=99.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccc
Q 009410 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (535)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (535)
.++..+++.+.....|..++|++....+....+......+++.|.++|+++.+|+..........
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~--------------- 147 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPS--------------- 147 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHH---------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhH---------------
Confidence 34567777777778899999988766555444444446999999999999999975111000000
Q ss_pred ccCChhhHHHHHHHHHHHHHhc-CCCEEEEEccCH--HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 261 LSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM--DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~--~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
.......+.++...+ +.++++.|+... ...+.+..+++. -++......... ..+
T Consensus 148 -------~~~~~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~-~nvy~d~s~~~~---------------~~~ 204 (273)
T PF04909_consen 148 -------DPADPEELEELLERFPDLRIILAHLGGPFPWWEEALRLLDRF-PNVYVDLSGIPP---------------FWY 204 (273)
T ss_dssp -------HHHHHHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHHHH-TTEEEECHSHHS---------------SEE
T ss_pred -------HHHHHHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHHhC-Cccccccccccc---------------ccc
Confidence 012222333344444 688999999888 333444444433 234443321000 000
Q ss_pred EEcCCCCCcccHHHHHHHHhc-C-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~ 415 (535)
.. ........+..+++. | -++++|||.+.. .... ...... .......+|.++.=+.
T Consensus 205 -~~---~~~~~~~~l~~~~~~~g~drilfGSD~P~~-~~~~----------------~~~~~~-~~~~~~~l~~~~~~~i 262 (273)
T PF04909_consen 205 -FW---PPSFDRPFLRRAVDEFGPDRILFGSDYPHP-DGAS----------------PYEYIW-EAYFLDDLSEEEREKI 262 (273)
T ss_dssp -EE---TTHHCHHHHHHHHHHHTGGGEEEE--TTSS-THHH----------------HHHHHH-HHHHHHHSSHHHHHHH
T ss_pred -cC---cccccHHHHHHHHHHhCCceEEecCCCCCC-Cccc----------------cHHHHH-HhhhccCCCHHHHHHH
Confidence 00 001112334444443 2 469999995433 2211 111111 1111111799999999
Q ss_pred HhHHHHHHcCC
Q 009410 416 TSTECARIFNV 426 (535)
Q Consensus 416 ~T~~~A~~lgl 426 (535)
...|+++++|+
T Consensus 263 ~~~NA~rl~~l 273 (273)
T PF04909_consen 263 LYDNARRLYGL 273 (273)
T ss_dssp HTHHHHHHHTC
T ss_pred HhHhHHHHcCc
Confidence 99999999985
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.027 Score=55.24 Aligned_cols=141 Identities=11% Similarity=0.028 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 213 NDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
+...+...+..|++.| +++.+|+....... .+.+++... .-.+.|+
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~----------------------------~v~~~~~~~-----~~RIgHg 197 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNRE----------------------------ELLQALLLL-----PDRIGHG 197 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChH----------------------------HHHHHHHhc-----cceeece
Confidence 5788899999999999 99999996432211 122222221 1234555
Q ss_pred cCHH-HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 292 MSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 292 ~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
.... ..++++.+++.++++..||+++........+ ..-+++.++++|++++++||+..
T Consensus 198 ~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~---------------------~~hP~~~~~~~G~~v~i~TDd~~ 256 (305)
T cd00443 198 IFLLKHPELIYLVKLRNIPIEVCPTSNVVLGTVQSY---------------------EKHPFMRFFKAGLPVSLSTDDPG 256 (305)
T ss_pred EecCCCHHHHHHHHHcCCEEEECcchhhhhcCCCCh---------------------hhChHHHHHHCCCeEEEeCCCCc
Confidence 4432 1267888999999999999874332211111 11238999999999999999764
Q ss_pred CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
.... .+...+..+....+++.++..+.+ .|+-+.-.+
T Consensus 257 ~~~~------------------~l~~E~~~~~~~~~l~~~~l~~l~-~nsi~~sf~ 293 (305)
T cd00443 257 IFGT------------------SLSEEYSLAAKTFGLTFEDLCELN-RNSVLSSFA 293 (305)
T ss_pred ccCC------------------ChHHHHHHHHHHcCcCHHHHHHHH-HHHHHHhcC
Confidence 3221 111112223335569998876554 555444433
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.075 Score=50.97 Aligned_cols=123 Identities=18% Similarity=0.129 Sum_probs=67.8
Q ss_pred cccccccccccccCCCC--------chhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcccccccceeee
Q 009410 106 GGIDPHTHLAMEFMGSE--------TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMA 176 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~--------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (535)
|.||+|.|++..-.... ..-..+.....+-..||+..+-+...... .....++... ...+ +..+..
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~-~~~r-~~g~~~--- 75 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALA-SNGK-ARGGAT--- 75 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHh-hCCC-eEEEEE---
Confidence 67999999986511000 01112233444557898877644221111 1222233222 1111 111111
Q ss_pred eecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 177 ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
..... ...++++++. ..|..++|+.....+.. +.+.+.++++.+.++|+++.+|+..
T Consensus 76 ~~p~~-~~~~~l~~~~-~~g~rGvRl~~~~~~~~--~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 76 VDPRT-TTDAELKEMH-DAGVRGVRFNFLFGGVD--NKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred ECCCC-CCHHHHHHHH-HCCCeEEEEecccCCCC--CHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 11111 2346666664 78999999865443332 7788899999999999999999853
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0094 Score=59.40 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
....+..++..|++.|+++.+|+.+........+.+.. .+.. .+.|+.
T Consensus 178 ~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~-------------------------------l~~~-RIgHG~ 225 (331)
T PF00962_consen 178 PPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILL-------------------------------LGAD-RIGHGV 225 (331)
T ss_dssp TGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHT-------------------------------ST-S-EEEE-G
T ss_pred chHHHHHHHhhhcccceeecceecccCCcccccchhhh-------------------------------ccce-eecchh
Confidence 34448889999999999999999655433322222211 1222 467776
Q ss_pred CHH-HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 293 SMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 293 ~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
... ..++++.+++.++++..||+++...-.-..+ ..-+++.++++|++++++||....
T Consensus 226 ~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~---------------------~~hP~~~~~~~gv~v~i~TDd~~~ 284 (331)
T PF00962_consen 226 RLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSY---------------------EEHPLRKLLDAGVPVSINTDDPGV 284 (331)
T ss_dssp GGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTG---------------------GG-CHHHHHHTT-EEEE--BSHHH
T ss_pred hhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeec---------------------chhHHHHHHHcCCceeccCCCccc
Confidence 432 2367888999999999999874432111111 112389999999999999996432
Q ss_pred ChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 372 NSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
.. +.+...+..+....++|.++.. ....|+.+.-.+
T Consensus 285 ~~------------------~~l~~ey~~~~~~~~l~~~~l~-~l~~nsi~~sf~ 320 (331)
T PF00962_consen 285 FG------------------TTLSDEYYLAAEAFGLSLADLK-QLARNSIEASFL 320 (331)
T ss_dssp HT-------------------SHHHHHHHHHHHHT--HHHHH-HHHHHHHHCSSS
T ss_pred cC------------------CCcHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHcC
Confidence 11 1122222233334479998854 455677665554
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0034 Score=49.69 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=31.4
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI 87 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~ 87 (535)
..|++|+|+.|+|..++..++|-|+||||+.||...
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkAG 100 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKAG 100 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-EB
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEeccC
Confidence 689999999999998888999999999999999743
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.16 Score=49.27 Aligned_cols=176 Identities=19% Similarity=0.162 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+...+++++.+++.|..++++.....+. ..++..+..+++.|.++|+++.+|........ +.. .+ .
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~-~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~---------~~~---~~-~ 177 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGF-YPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA---------GLE---KG-H 177 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCC-CCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc---------ccc---cC-C
Confidence 4467788888877889999885443332 33566689999999999999999985542110 000 00 0
Q ss_pred cCChhhHHHHHHHHHHHHHhc-CCCEEEEEcc--CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeE
Q 009410 262 SRPPLLEGEATTRAIRLAEFV-NTPLYVVHVM--SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (535)
..| ..+-..+..+ ..++++.|+. .+-..+.+..+ ...-++...... ...+
T Consensus 178 ~~p--------~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a-~~~~nvy~d~s~------------------~~~~ 230 (293)
T COG2159 178 SDP--------LYLDDVARKFPELKIVLGHMGEDYPWELEAIELA-YAHPNVYLDTSG------------------VRPK 230 (293)
T ss_pred CCc--------hHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHH-HhCCCceeeeec------------------cccc
Confidence 011 1122344455 7899999997 44332333333 333344433221 0011
Q ss_pred EcCCCCCcccHHHHHHHHh-cCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 009410 339 MSPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTS 417 (535)
Q Consensus 339 ~~p~~r~~~~~~~~~~~l~-~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T 417 (535)
..++ .-+..+.+ -.-++.+|||.+...... .+. .....+++.+..-+..-
T Consensus 231 ~~~~-------~~~~~~~~~~~dkilFGSD~P~~~~~~-----------------~l~-----~~~~l~l~~e~k~kiL~ 281 (293)
T COG2159 231 YFAP-------PLLEFLKELGPDKILFGSDYPAIHPEV-----------------WLA-----ELDELGLSEEVKEKILG 281 (293)
T ss_pred cCCh-------HHHHHHHhcccCeEEecCCCCCcCHHH-----------------HHH-----HHHhcCCCHHHHHHHHH
Confidence 1111 12333444 246699999954432221 111 12255699988899999
Q ss_pred HHHHHHcCCC
Q 009410 418 TECARIFNVY 427 (535)
Q Consensus 418 ~~~A~~lgl~ 427 (535)
.|++++++++
T Consensus 282 ~NA~rll~l~ 291 (293)
T COG2159 282 ENAARLLGLD 291 (293)
T ss_pred HhHHHHhCcC
Confidence 9999999984
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.021 Score=56.05 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=85.1
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q 009410 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (535)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 290 (535)
...++.+..+++.++..|+.+.+|+..........+.+...+.. .+.|
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~~--------------------------------rI~H 228 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGAE--------------------------------RIGH 228 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhchh--------------------------------hhcc
Confidence 34688999999999999999999996443332222222111110 1334
Q ss_pred ccCH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 291 VMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 291 ~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
..-. ...+++..+.+.++++..||.++-. .+. .+. -..-++++++++|+++++.||..
T Consensus 229 Gi~~~~d~~L~~~l~~~qI~levCP~SNi~-------------~~~----v~~----~~~hPf~~~~d~Gv~VsLnTDdp 287 (345)
T COG1816 229 GIRAIEDPELLYRLAERQIPLEVCPLSNIQ-------------LGV----VPS----LAKHPFKKLFDAGVKVSLNTDDP 287 (345)
T ss_pred ccccccCHHHHHHHHHhCCeeEECCcchhh-------------ccc----ccc----hhhCcHHHHHHcCCceEEcCCCh
Confidence 4321 1227788889999999999986321 110 000 11134999999999999999976
Q ss_pred CCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 370 AFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
..... |. ..+.. .++...+++..|+.+ .+.|+=+.-++
T Consensus 288 ~~f~~------------~l--~~Ey~----~aa~~~~l~~~dl~~-~arnav~~af~ 325 (345)
T COG1816 288 LYFGT------------PL--IEEYL----VAAQIYGLSREDLCE-LARNAVEAAFI 325 (345)
T ss_pred hhcCC------------ch--HHHHH----HHHHHhCCCHHHHHH-HHHHHHHHccC
Confidence 54221 11 11111 222344588888754 45555555444
|
|
| >PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0047 Score=41.67 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEEECCEEEEECCeecccCCCceEeecC
Q 009410 474 KVEVTIAGGRVVWENDELNVVPGSGKYIEMR 504 (535)
Q Consensus 474 ~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~ 504 (535)
=|.+|||||++++++|+++. ..+|+.|+++
T Consensus 19 GI~~V~VNG~~vv~~g~~t~-~~~G~~lrr~ 48 (48)
T PF07908_consen 19 GIDYVFVNGQIVVEDGEVTG-ARPGRVLRRP 48 (48)
T ss_dssp SEEEEEETTEEEECTTEESS-S----B----
T ss_pred CEEEEEECCEEEEECCeECC-CCCCeEecCC
Confidence 48999999999999999776 5589998863
|
5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A. |
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.96 Score=47.11 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 298 EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 298 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
..++.++++++.+-.||+++...-.-.++. .-++..++++|++++|+||.+..
T Consensus 363 ~l~~~vke~~I~lEvCP~SN~~l~~v~~~~---------------------~HPl~~lla~Gvpv~InSDDP~~ 415 (479)
T TIGR01431 363 LVLQMLKERNIAVEVNPISNQVLQLVADLR---------------------NHPCAYLFADNYPMVISSDDPAF 415 (479)
T ss_pred HHHHHHHHhCCeEEECccchhhhcccCCcc---------------------cChHHHHHHCCCcEEEeCCCccc
Confidence 788899999999999999754422211111 13388999999999999997643
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.59 Score=46.38 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
+...+..++..+.+.|+...+|+.....-...++. ++++ .+.. .+.|..
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~v~~---------------------------~LD~---l~~~-RIGHG~ 273 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNGGASVVKN---------------------------ALDL---LGTE-RIGHGY 273 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCCChHHHHH---------------------------HHHh---hCCc-cccCce
Confidence 45566666777777899999999544211122222 2220 1111 244443
Q ss_pred CH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 293 SM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 293 ~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
.. +...++.+++..++.+..||.++.....-.++ . .-++..++++|+++.|+||.+.
T Consensus 274 ~l~~dp~L~~~~k~~nI~lEiCP~SN~vl~~v~d~-----------r----------nhp~~~~~~~~vP~vI~sDDP~ 331 (399)
T KOG1097|consen 274 FLTKDPELINLLKSRNIALEICPISNQVLGLVSDL-----------R----------NHPVARLLAAGVPVVINSDDPG 331 (399)
T ss_pred eccCCHHHHHHHHhcCceEEEccchhhheeccccc-----------c----------ccHHHHHHhCCCCEEEeCCCcc
Confidence 22 11267888999999999999875442222111 1 1348899999999999999754
|
|
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=6.1 Score=37.51 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 214 DELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 214 ~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
.+.+++.++..+++|+.+..+....
T Consensus 123 a~~~r~~~~rL~~~gl~fdl~~~~~ 147 (279)
T COG3618 123 APAWRANVERLAKLGLHFDLQVDPH 147 (279)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeChh
Confidence 3788999999999999998887544
|
|
| >PRK08392 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=6.2 Score=36.43 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=23.0
Q ss_pred cccccccccccCCCCchhhhHHHHHHHHhCCcEEEe
Q 009410 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (535)
Q Consensus 108 ID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~ 143 (535)
||.|+|...+ .|..+ .......+.+.|++.+.
T Consensus 1 ~D~H~HT~~s-d~~~~---~~e~v~~A~~~Gl~~i~ 32 (215)
T PRK08392 1 MDLHTHTVYS-DGIGS---VRDNIAEAERKGLRLVG 32 (215)
T ss_pred CccccCCCCc-CCcCC---HHHHHHHHHHcCCCEEE
Confidence 7999998776 23333 44447788899999775
|
|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=8.4 Score=41.35 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=26.0
Q ss_pred Eeeccc-------ccccccccccCCCCchhhhHHHHHHHHhCCcEEEe
Q 009410 103 VMPGGI-------DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (535)
Q Consensus 103 vlPGlI-------D~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~ 143 (535)
-+|=|| |.|+|.... .|..+ +....+.+.+.|++.+.
T Consensus 324 ~lp~lv~~~d~~~DlH~HT~~s-Dg~~s---leemv~~A~~~Gl~~i~ 367 (570)
T PRK08609 324 DLSNLITLSDIQGDLHMHTTWS-DGAFS---IEEMVEACIAKGYEYMA 367 (570)
T ss_pred hchhhhhhHhhcCCccccCCCC-CCCCC---HHHHHHHHHHCCCCEEE
Confidence 566664 999998755 23333 44457888899999887
|
|
| >COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.22 E-value=3.2 Score=37.38 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.8
Q ss_pred cccccccccccc-CCCCchhhhHHHHHHHHhCCcEEEecc
Q 009410 107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHIDF 145 (535)
Q Consensus 107 lID~H~H~~~~~-~g~~~~~~~~~~~~~~l~~GvTtv~d~ 145 (535)
+||.|+|+--.. .|..+.++-...++.+.+.|||+++-.
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaT 40 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVAT 40 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeec
Confidence 699999986552 244455555666788899999999854
|
|
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.51 E-value=15 Score=34.56 Aligned_cols=139 Identities=16% Similarity=0.153 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCC--CEEEEE
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT--PLYVVH 290 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~H 290 (535)
..+.+..+++.|+..+.++..|.++... +...+.-+++.+.|. .-.+-|
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~~-----------------------------~~~~~i~~~ak~~G~~~~~VVkH 193 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLDE-----------------------------ETYEEIAEMAKEAGIKPYRVVKH 193 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCh-----------------------------HHHHHHHHHHHHhCCCcceeEee
Confidence 4567788899999999999999976532 223333344445553 123556
Q ss_pred ccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 291 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
...+.. ......| ++++.. ..+..+.++++.|-.+++-||..-
T Consensus 194 ha~p~v----~~~~~~G--i~pSV~-------------------------------asr~~v~~a~~~g~~FmmETDyID 236 (285)
T COG1831 194 HAPPLV----LKCEEVG--IFPSVP-------------------------------ASRKNVEDAAELGPRFMMETDYID 236 (285)
T ss_pred cCCccc----hhhhhcC--cCCccc-------------------------------ccHHHHHHHHhcCCceEeeccccc
Confidence 655432 1122234 222111 112468889999999999999643
Q ss_pred CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.... |-.-+|. -.++.-.+.+++.+.++.+.+.+..-.||.+.+|++
T Consensus 237 Dp~R-------pgavL~P---ktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 237 DPRR-------PGAVLGP---KTVPRRTREILEKGDLTEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred Cccc-------CCCcCCc---cchhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCcc
Confidence 2221 1111111 124444446667888999999999999999999984
|
|
| >PRK07945 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=37 Score=33.77 Aligned_cols=40 Identities=23% Similarity=0.109 Sum_probs=26.9
Q ss_pred CCEEeec-ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEe
Q 009410 100 GKFVMPG-GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (535)
Q Consensus 100 G~~vlPG-lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~ 143 (535)
|..+.+- .+|.|+|...+ .|. ..+....+.+.+.|++.+.
T Consensus 89 g~~l~~~~~~D~H~HT~~S-dg~---~~~ee~v~~Ai~~Gl~~i~ 129 (335)
T PRK07945 89 GGALRAALRGDLHTHSDWS-DGG---SPIEEMARTAAALGHEYCA 129 (335)
T ss_pred cHHHHHHHhhhcccccCCC-CCC---CCHHHHHHHHHHCCCCEEE
Confidence 4434333 57999998876 233 3344558888999999876
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.12 E-value=9.7 Score=34.97 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=58.1
Q ss_pred EEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
++.|...... +.++.+++.|+.+-.+.... .......-+..+.+.|++++++|
T Consensus 116 vlaHpd~~~~-~~~~~~~~~~~~lEin~~~~--------------------------~~~~~~~~l~~a~~~gi~vv~~S 168 (212)
T PRK06361 116 ILAHPGLITE-EEAELAAENGVFLEITARKG--------------------------HSLTNGHVARIAREAGAPLVINT 168 (212)
T ss_pred EecCcchhhH-HHHHHHHHcCeEEEEECCCC--------------------------cccchHHHHHHHHHhCCcEEEEC
Confidence 4677765554 66777888886554332100 00011133455566799999999
Q ss_pred CCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
|... ... + . .+.. ...+....|++.++++.+.+.||+++++.
T Consensus 169 DaH~--~~d-------~-------~-~~~~-~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 169 DTHA--PSD-------L-------I-TYEF-ARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred CCCC--HHH-------H-------H-HHHH-HHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 9542 111 0 0 1222 22444678899999999999999999874
|
|
| >KOG3020 consensus TatD-related DNase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.60 E-value=36 Score=32.88 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=94.3
Q ss_pred EecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceee
Q 009410 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM 175 (535)
Q Consensus 96 ID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (535)
.|-.-...-|.+.|+|.|+... . ...+.......+...||...+.++.... .....++......+..+..+|.|.
T Consensus 7 ~d~~~~~~~~~~~~~~~~~~~~--~--~~~d~s~v~~~a~~~~v~~~~v~gt~~~-d~~~~~~l~~~y~~~v~~t~G~HP 81 (296)
T KOG3020|consen 7 LDDGRNFTNPMLEDIYCHIQAH--P--SDSDASQVLERAVQAGVSKLIVTGTSLK-DSKEALELAEKYPGSVYPTFGVHP 81 (296)
T ss_pred hhhhhhhcchhhchhhhccccC--C--CCccchHHHHHHHhccceEEEEeCCCcc-hHHHHHHHHhhCCCceeeccCcCC
Confidence 3444456667899999998765 2 2222223356778899999987765322 233444433332133444444443
Q ss_pred eeec-CCh-----hhHHHHHHHHHHcCC--C--EEEE-EeecCCCCcC----CHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009410 176 AITK-WDE-----VVSDEMEVMVKEKGI--N--SFKF-FMAYKGSFMI----NDELLIEGFKRCKSLGALAMVHAENGDA 240 (535)
Q Consensus 176 ~~~~-~~~-----~~~~~~~~~~~~~g~--~--~ik~-~~~~~~~~~~----~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 240 (535)
-... +.. ...+.+..+++. +. . .+.. .+++...... -...+++-++.|.+..+|+.+|+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~- 159 (296)
T KOG3020|consen 82 HFSQEFSDQSRKEKFLDTLLSIIEN-GFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAH- 159 (296)
T ss_pred CcccchhhccchhhHHHHHHHHHhh-cccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhh-
Confidence 2211 111 245566666544 21 1 1111 1122211112 245578899999999999999996532
Q ss_pred HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcE
Q 009410 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRV 310 (535)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v 310 (535)
.+..+.+.+.+ .+...+ .+.|+.+... +++..+.+.++.+
T Consensus 160 -~d~~eIl~~~~---------------------------~~~~~~-vvvHsFtGs~-e~~~~~lk~~~yi 199 (296)
T KOG3020|consen 160 -EDLLEILKRFL---------------------------PECHKK-VVVHSFTGSA-EEAQKLLKLGLYI 199 (296)
T ss_pred -HHHHHHHHHhc---------------------------cccCCc-eEEEeccCCH-HHHHHHHHccEEe
Confidence 22222222211 111112 4678888776 6777787787333
|
|
| >cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring | Back alignment and domain information |
|---|
Probab=82.86 E-value=7.6 Score=40.49 Aligned_cols=91 Identities=9% Similarity=-0.010 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhh
Q 009410 298 EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377 (535)
Q Consensus 298 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~ 377 (535)
.+...+...++++..||++....+ ..+. .-++..++++|++++|+||.+......+
T Consensus 363 ~L~~l~~~~qI~levCPlSN~~l~-------------~~~~----------~HP~~~~l~~Gl~VsInTDDPl~f~~t~- 418 (496)
T cd01319 363 VLQYLYYLTQIGIAMSPLSNNSLF-------------LSYE----------KNPFPEFFKRGLNVSLSTDDPLQFHFTK- 418 (496)
T ss_pred HHHHHHHHcCCeEEEecCccHhhh-------------cCcc----------cChHHHHHHCCCeEEEeCCCchhhCCCC-
Confidence 344455678999999998753211 1111 1338999999999999999754311100
Q ss_pred cCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 378 FGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 378 ~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.. +...+..+....++|..+.. .++.|+.+.-+++
T Consensus 419 ----------~~----L~eEY~~a~~~~~Ls~~Dl~-eLarNSV~~Sf~~ 453 (496)
T cd01319 419 ----------EP----LMEEYSIAAQVWKLSTCDMC-ELARNSVLQSGFE 453 (496)
T ss_pred ----------Cc----HHHHHHHHHHHcCCCHHHHH-HHHHHHHHHhCCC
Confidence 00 11122233345579988774 5567777766663
|
AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway. |
| >TIGR01429 AMP_deaminase AMP deaminase | Back alignment and domain information |
|---|
Probab=82.65 E-value=14 Score=39.54 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhh
Q 009410 298 EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377 (535)
Q Consensus 298 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~ 377 (535)
.+...+...++++.+||+++...+ ..+ ..-++..++++|++++++||.+......+
T Consensus 475 ~L~yl~~~~qI~LevCPtSN~~l~-------------~~y----------~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~- 530 (611)
T TIGR01429 475 VLQYLYYLTQIPIAMSPLSNNSLF-------------LEY----------SKNPLPEYLHKGLNVSLSTDDPLQFHYTK- 530 (611)
T ss_pred HHHHHHHHcCCeEEEcCCcchhhc-------------cCh----------hhChHHHHHHCCCeEEEcCCCchhhCCCC-
Confidence 445556788999999999743110 111 11348999999999999999754311100
Q ss_pred cCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 378 FGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 378 ~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
..+...+..+.+..+++..+..++ ..|+.+.-+.+
T Consensus 531 --------------epL~EEY~~aa~~~~Ls~~Dl~eL-arNSV~~S~~~ 565 (611)
T TIGR01429 531 --------------EALMEEYAIAAQVWKLSTCDMCEL-ARNSVLQSGFE 565 (611)
T ss_pred --------------CcHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHhCCC
Confidence 001122223334557999877654 66777666663
|
This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model. |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.11 E-value=21 Score=35.60 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHcCCCEEEEEee-cC--C-CCcCCHHHHHHHHHHHHhcCCeEEEE------cCChhhHHHHHHHHHHcCC
Q 009410 184 VSDEMEVMVKEKGINSFKFFMA-YK--G-SFMINDELLIEGFKRCKSLGALAMVH------AENGDAVFEGQKRMIELGI 253 (535)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~-~~--~-~~~~~~~~l~~~~~~a~~~g~~v~~H------~~~~~~~~~~~~~~~~~g~ 253 (535)
..+.+.... +.|++.+=+... +. . ....+.+.++++++.||++|.++.+= ..........++.+.+.|.
T Consensus 15 ~l~~l~~ai-~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv 93 (347)
T COG0826 15 NLEDLKAAI-AAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV 93 (347)
T ss_pred CHHHHHHHH-HcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 455666666 677776533211 11 1 12467888999999999999976443 3333445677788888887
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHhcC--CCEEEEEccCHHHHHHHHHHHHcCCc
Q 009410 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDAMEEIAKARKAGQR 309 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~~~~~~~~~~~~~~g~~ 309 (535)
..+.. +-..++.++++.+ .++|..+..+....+.+..+++.|..
T Consensus 94 Daviv------------~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~ 139 (347)
T COG0826 94 DAVIV------------ADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAK 139 (347)
T ss_pred CEEEE------------cCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCE
Confidence 76431 1223455556555 77777666555555666666666643
|
|
| >PRK07328 histidinol-phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=80.60 E-value=55 Score=31.32 Aligned_cols=34 Identities=21% Similarity=-0.083 Sum_probs=23.8
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEe
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHI 143 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~ 143 (535)
++|.|+|.....-+..+ ++...+.|.+.|++++.
T Consensus 3 ~~D~H~HT~~s~~~~~~---~ee~v~~A~~~Gl~~i~ 36 (269)
T PRK07328 3 LVDYHMHTPLCGHAVGT---PEEYVQAARRAGLKEIG 36 (269)
T ss_pred ceeeccCCCCCCCCCCC---HHHHHHHHHHCCCCEEE
Confidence 47999998765223333 44457888899999876
|
|
| >PLN03055 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=9.8 Score=40.45 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=60.3
Q ss_pred EEEccCH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 288 VVHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 288 ~~H~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
+.|.... +...+..+++..++.+..||+++...+ ..+ ..-++..++++|+++.|+|
T Consensus 442 IgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~l~-------------~~y----------~~HP~~~~~~~Gl~VSInT 498 (602)
T PLN03055 442 IAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNSLF-------------LDY----------HRNPFPMFFARGLNVSLST 498 (602)
T ss_pred ecCccccCCCHHHHHHHHHcCCeEEEccCcchhhc-------------cch----------hhChHHHHHHCCCEEEEcC
Confidence 4455432 222667777888999999999753211 111 1234899999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
|........+ ..+... +..+.+..++|..+.. .++.|+.+.-+++
T Consensus 499 DDPl~f~tT~-----------epL~eE----Y~~aa~~~~LS~~DL~-eLarNSV~~Sf~~ 543 (602)
T PLN03055 499 DDPLQIHLTK-----------EPLVEE----YSIAAQVWKLSSCDLC-EIARNSVLQSGFP 543 (602)
T ss_pred CCcchhcCCC-----------CcHHHH----HHHHHHHhCCCHHHHH-HHHHHHHHHhcCC
Confidence 9754311100 001112 2233335579988874 4577887777764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 535 | ||||
| 2ftw_A | 521 | Crystal Structure Of Dihydropyrimidinase From Dicty | 1e-130 | ||
| 2vr2_A | 541 | Human Dihydropyrimidinase Length = 541 | 1e-121 | ||
| 3dc8_A | 490 | Crystal Structure Of Dihydropyrimidinase From Sinor | 1e-117 | ||
| 2gse_A | 501 | Crystal Structure Of Human Dihydropyrimidinease-Lik | 1e-111 | ||
| 1kcx_A | 518 | X-Ray Structure Of Nysgrc Target T-45 Length = 518 | 1e-111 | ||
| 4b91_A | 484 | Crystal Structure Of Truncated Human Crmp-5 Length | 6e-97 | ||
| 4b90_A | 586 | Crystal Structure Of Wt Human Crmp-5 Length = 586 | 8e-97 | ||
| 1yny_A | 461 | Molecular Structure Of D-Hydantoinase From A Bacill | 1e-95 | ||
| 3sfw_A | 461 | Crystal Structure Of Dihydropyrimidinase From Brevi | 3e-95 | ||
| 1k1d_A | 460 | Crystal Structure Of D-Hydantoinase Length = 460 | 7e-91 | ||
| 1nfg_A | 457 | Structure Of D-Hydantoinase Length = 457 | 2e-76 | ||
| 1gkp_A | 458 | D-Hydantoinase (Dihydropyrimidinase) From Thermus S | 9e-76 | ||
| 2fty_A | 559 | Crystal Structure Of Dihydropyrimidinase From Sacch | 7e-51 | ||
| 3hm7_A | 448 | Crystal Structure Of Allantoinase From Bacillus Hal | 1e-33 | ||
| 1gkr_A | 458 | L-Hydantoinase (Dihydropyrimidinase) From Arthrobac | 2e-33 | ||
| 3e74_A | 473 | Crystal Structure Of E. Coli Allantoinase With Iron | 3e-33 | ||
| 3mpg_A | 428 | Dihydroorotase From Bacillus Anthracis Length = 428 | 1e-24 | ||
| 3gri_A | 424 | The Crystal Structure Of A Dihydroorotase From Stap | 4e-22 | ||
| 1xrf_A | 467 | The Crystal Structure Of A Novel, Latent Dihydrooro | 4e-19 | ||
| 3d6n_A | 422 | Crystal Structure Of Aquifex Dihydroorotase Activat | 5e-19 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 1e-05 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 2e-05 | ||
| 2gwn_A | 452 | The Structure Of Putative Dihydroorotase From Porph | 2e-05 | ||
| 3ooq_A | 396 | Crystal Structure Of Amidohydrolase From Thermotoga | 6e-04 |
| >pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521 | Back alignment and structure |
|
| >pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541 | Back alignment and structure |
|
| >pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490 | Back alignment and structure |
|
| >pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501 | Back alignment and structure |
|
| >pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518 | Back alignment and structure |
|
| >pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484 | Back alignment and structure |
|
| >pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586 | Back alignment and structure |
|
| >pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461 | Back alignment and structure |
|
| >pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461 | Back alignment and structure |
|
| >pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460 | Back alignment and structure |
|
| >pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457 | Back alignment and structure |
|
| >pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458 | Back alignment and structure |
|
| >pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559 | Back alignment and structure |
|
| >pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448 | Back alignment and structure |
|
| >pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458 | Back alignment and structure |
|
| >pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473 | Back alignment and structure |
|
| >pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428 | Back alignment and structure |
|
| >pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424 | Back alignment and structure |
|
| >pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467 | Back alignment and structure |
|
| >pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From Porphyromonas Gingivalis Length = 452 | Back alignment and structure |
|
| >pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga Maritima Msb8 Length = 396 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 642 bits (1659), Expect = 0.0
Identities = 220/469 (46%), Positives = 303/469 (64%), Gaps = 7/469 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IKGGT+V A ADV VE G +V + PN+ + LDATG +VMPGGIDPHTH
Sbjct: 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172
L M FMG+ + DDF SG AALAGGTTM +DF +P G SL ++ K+ + DY
Sbjct: 59 LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMAIT W E V +EME +VK+KGIN+FK FMAYKG+ M++D+ + F+RC +LGAL +
Sbjct: 119 FHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPL 178
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD V + Q +++ G +GPE HA SRP +EGEA RAI +A+ P+Y+VH
Sbjct: 179 VHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A E I +AR G RV GEP++ L LD++ + D+ AA+ VMSPP R H +L
Sbjct: 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG---IEERMHLVWDTMVESGQISV 409
A LA+G LQ+V TDHCAF + QK FG+ DF +IPNG +E+RM ++W V +G+I++
Sbjct: 299 WAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITM 358
Query: 410 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 469
++V +TST A+I N+YP+KGAILVG+DAD+++++P S I+A++ S +D NV+EG+
Sbjct: 359 NEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAIDYNVFEGK 418
Query: 470 RVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADA 518
V G T+ G V E + G G+++ PF + L
Sbjct: 419 TVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRRDPFPAVSTALSTWKE 467
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 629 bits (1626), Expect = 0.0
Identities = 162/459 (35%), Positives = 252/459 (54%), Gaps = 7/459 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG IDPH H+
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
+ FM + D +G AAL GGTT +I+ P G++ ++ KA+ NS DY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMA++K+DE ++ +V + GI+SFK F++YK F ++D + + + K LG +
Sbjct: 122 FHMAVSKFDEKTEGQLREIVAD-GISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
H EN + V Q++++ G TGPE H SRP +E E T R E YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A++ A+ G + E V+ +LD ++ V A KY+MSPP+R + K L
Sbjct: 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTY-AERGGVEAMKYIMSPPLRDKRNQKVL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVESGQISV 409
ALA G + VGTDHC F++ QK G + F IPNGI E+R++L++ V G++ +
Sbjct: 300 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDI 359
Query: 410 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 469
+V ST+ A++F ++PRKG I VGSDAD+++++P I+ ++ H D N +EG
Sbjct: 360 HRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDYNGFEGF 419
Query: 470 RVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY 508
+ G+ V G+V + + G GK + P +
Sbjct: 420 EIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMYF 458
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 631 bits (1630), Expect = 0.0
Identities = 248/486 (51%), Positives = 327/486 (67%), Gaps = 7/486 (1%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGID
Sbjct: 6 QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDT 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A
Sbjct: 66 HTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN 125
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK LG
Sbjct: 126 CDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP+Y+
Sbjct: 186 AIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 246 VHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPR 305
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVES 404
K L LA G L VGTD+C F + QKA G DDF KIPNG+ E+RM +VW+ V +
Sbjct: 306 TKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNT 365
Query: 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 464
G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +D N
Sbjct: 366 GKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFN 425
Query: 465 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSL 524
++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K + L
Sbjct: 426 IFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVRNEL 484
Query: 525 QAPVKR 530
V R
Sbjct: 485 LRKVDR 490
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 628 bits (1623), Expect = 0.0
Identities = 208/474 (43%), Positives = 300/474 (63%), Gaps = 7/474 (1%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A + V+PGGID
Sbjct: 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HT M G + DDFF G AALAGGTTM ID V+P G SL A F+ + + A SC
Sbjct: 84 HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ I++W + + +EME +VK+ G+NSF +MA+K F + D + E + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + E Q+R+++LGITGPEGH LSRP +E EA RAI +A N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS + E IA+ARK G V GEP+ + L D S W ++ AA +V SPP+
Sbjct: 264 TKVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPT 323
Query: 349 N-KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVES 404
L + L+ G LQ+ G+ HC FN+ QKA G D+F IP G EERM ++WD V +
Sbjct: 324 TPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVT 383
Query: 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 464
G++ +V +TST A++FN+YPRKG I VGSDAD++I++P+S I+A++H+S L+ N
Sbjct: 384 GKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYN 443
Query: 465 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 517
++EG +G V I+ G++V E+ L+V GSG+YI +PF ++++ +
Sbjct: 444 IFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARS 497
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 630 bits (1627), Expect = 0.0
Identities = 236/513 (46%), Positives = 323/513 (62%), Gaps = 17/513 (3%)
Query: 32 NNLFCDAGSEYGGPQCGIQSSSK---ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88
++ +G + G QS + +LI+GG VVN ++ADV VEDG+V A+ ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLL 62
Query: 89 ----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
++VLDA GK V+PGGID HTH+ FMGS +IDDF G AAL+GGTTM ID
Sbjct: 63 PPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIID 122
Query: 145 FVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF 202
F IP G SL FE + A C DY H+A+T W + V +EM+++V++KG+NSFK
Sbjct: 123 FAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKM 182
Query: 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262
FMAYK +M+ D L E F RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L
Sbjct: 183 FMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELC 242
Query: 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322
RP +E EAT RAI +A VN PLY+VHVMS A + IA AR+ G+ V GEP+ + L D
Sbjct: 243 RPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTD 302
Query: 323 DSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ W+ ++ AA +VM PP+R L LA L GTD+C FN+ QKA G D
Sbjct: 303 GTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKD 362
Query: 382 DFRKIPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 438
DF KIPNG+ E+RM ++W+ V SG++ +V +TST A+IFN+YPRKG I VGSD
Sbjct: 363 DFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSD 422
Query: 439 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 498
ADI+I++P + I+A++HH ++ N++EG G VTI+ G+VV+E +V G G
Sbjct: 423 ADIVIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDG 482
Query: 499 KYIEMRPF-NYLFHGLDKADAKYLSSLQAPVKR 530
K+I +PF Y++ + + D + PV+R
Sbjct: 483 KFIPRKPFAEYIYKRIKQRDR---TCTPTPVER 512
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 626 bits (1618), Expect = 0.0
Identities = 202/460 (43%), Positives = 277/460 (60%), Gaps = 8/460 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+ GTVV A ADV ++ VVA+ ++ D +V+DATG +++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T D+FF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ ++ ++ V +E+E +V +GI S K FMAYK M +DE L + R K LGAL
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
DA+ IA+AR+ G V GE LVLD + L DF AKYV SPP+R +
Sbjct: 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFE-GAKYVWSPPLREKWNQDV 299
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGI---EERMHLVWDTMVESGQI 407
L +AL GILQ VG+DHC FN S QK G DF KIPNG E+RM +++ V G+I
Sbjct: 300 LWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKI 359
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
S+ +V +TST+ A++F ++P+KG I VGSDADI++F+P I+ +HH +D N +E
Sbjct: 360 SLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVETHHMNVDYNPFE 419
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507
G +V G V ++ G V N + G+G+Y++ F
Sbjct: 420 GMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKRSTFA 459
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 613 bits (1583), Expect = 0.0
Identities = 174/459 (37%), Positives = 263/459 (57%), Gaps = 11/459 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
I+IK GT+V A AD+ ++DG + + + + + +DA G++V PGGID HTH
Sbjct: 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPGGIDVHTH 59
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ +++ D F + AA GGTT +DF G SL ++ A S +DY
Sbjct: 60 VETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDY 119
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
G+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ + G+L
Sbjct: 120 GYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLV 178
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 179 MVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+++EE+ +A+ G R + E L L L DF AKYV +PP RA +
Sbjct: 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDV 297
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGI---EERMHLVWDTMVESGQI 407
L AL G+ + V +DHC++ K G +DFR IPNG EER+ +V+ V G+I
Sbjct: 298 LWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRI 356
Query: 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 467
S+T +V L +T A++F ++P+KG I VGSDADI++++P + I + H+ +D + YE
Sbjct: 357 SLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYE 416
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 506
G +VKG + + G+V+ + P GK+++ R +
Sbjct: 417 GHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKY 455
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 589 bits (1522), Expect = 0.0
Identities = 123/462 (26%), Positives = 210/462 (45%), Gaps = 17/462 (3%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMPG +D H
Sbjct: 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHV 61
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMD 170
H+ ++ F +A GG T I+ I + F +K+A +D
Sbjct: 62 HI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSL 227
+ + + E+ M + G FK MA M ++D L E F+ +
Sbjct: 121 FALYGGGVPGNL---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAAC 176
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ +VHAEN + QK++ G + S+P E EA RA+ L + L
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
V+HV + D +E I +A+ GQ V E L + ++PP+R++
Sbjct: 237 VLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI----GPYMKVAPPVRSAE 292
Query: 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVES 404
N L L G++ +G+DH K G D K NG E + ++ V
Sbjct: 293 MNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNK 352
Query: 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 464
G++S+ V + + A++F +YP+KG + VGSDAD++I + + ++ A S +
Sbjct: 353 GRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHKYS 412
Query: 465 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 506
++G V G +T+ G VV E E+ V G G+++ R +
Sbjct: 413 PFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTRRNY 454
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 547 bits (1412), Expect = 0.0
Identities = 147/540 (27%), Positives = 246/540 (45%), Gaps = 69/540 (12%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK G + A A++ V +G V + +I+ +V+DA G F+ PGGID H H+
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 AMEF-MGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEA------YEKKAKN 166
+ + +D +A+AGGTT + F ++ + E +
Sbjct: 65 DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSFMINDELLIE 219
DYG H+ + + ++ + E++ + G++S K FM Y G I+D ++
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMS 183
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G M+HAENGD V + + E G+T H +SRP ++EGEAT RAI LA
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243
Query: 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT------ 333
++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGV 303
Query: 334 --------------------AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+KY+ SPPIR G K++ + G +VG+DHC++N
Sbjct: 304 GIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNY 363
Query: 374 TQKAFGI-------------DDFRKIPNGI---EERMHLVWDTMVESGQI-SVTDYVRLT 416
+K +FR IPNG+ RM L++D G + S+ V +
Sbjct: 364 YEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQ 423
Query: 417 STECARIFNVYPRKGAILVG-SDADIIIFNPNSS--------FEITARSHHSRLDTNVYE 467
T A+++ +YP+KG+IL G SDAD++I+ P+ S IT + D +E
Sbjct: 424 CTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFE 483
Query: 468 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAP 527
G +K TI G++V++ E+ GKY++ R +++ ++ ++ ++P
Sbjct: 484 GIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK-RGKSFMCTPKNEWVTEWRPKYESP 542
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 459 bits (1184), Expect = e-159
Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 29/460 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GTV+ + ++ D+ V+ G + A+ ++ +V+DA+G V PG +D HTH+
Sbjct: 25 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAK--EVMDASGLVVSPGMVDAHTHI 82
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-DY 171
+ G + + +G AA GG T I+ + + A E AK D
Sbjct: 83 SE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 140
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM-------INDELLIEGFKRC 224
+ ++ D + + + G+ FK F+A G +ND +G ++
Sbjct: 141 AQLGGLVSYNI---DRLHELDEV-GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG +VH EN E + G + SRP E EA R + LA+
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
L+V HV S + +EE+ +AR+ GQ + E VLD SPPIR
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIG----TLAKCSPPIR 312
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTM 401
+ K + L G + + +DH KA + K GI + M +++D
Sbjct: 313 DLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEA 369
Query: 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 461
V+ +S+ + +L +T A IF + +KG I G DAD + PNSS+ +T R
Sbjct: 370 VQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRH 428
Query: 462 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 501
+ Y GR + ++ TI G V+++ ++ V G++I
Sbjct: 429 KVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 468
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 449 bits (1157), Expect = e-155
Identities = 119/453 (26%), Positives = 205/453 (45%), Gaps = 24/453 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTH 113
++I+ TVV ADV + +GIV A+ ++ DD +D TG + PG +D H H
Sbjct: 8 LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAK-NSCMD 170
G + F SG + AGG T + D + N + + A S +D
Sbjct: 68 FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSL 227
Y F + + D ++ + G+ FK FM+ G+ +DE L++G K+ +L
Sbjct: 126 YRFWGGLVPGNI---DHLQDLHDG-GVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ VHAE+ + V IE + ++ +RP + E EA R +R A+ P++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT-AAKYVMSPPIRAS 346
+ HV S ++ I +A+ G V E L+ +F +PP+R
Sbjct: 242 ICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLD-----EFAEIGYLAKCAPPLRER 296
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMVE 403
+ L L G + L+ +DH K ++ GI + + ++
Sbjct: 297 QEVEDLWDGLMAGEIDLISSDHSPSLPQMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYH 354
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
++ +T V+L STE A+ F +YP+KG I VG++A + + N S+ + A + R
Sbjct: 355 KRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASDLYYRHPI 414
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 496
+ Y G+R +GKV+ TI G+ V+++ E +
Sbjct: 415 SPYVGQRFRGKVKHTICQGKHVYQDHEGHHHHH 447
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 2e-86
Identities = 92/468 (19%), Positives = 177/468 (37%), Gaps = 35/468 (7%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGID 109
KIL++ + N V ++ + + DD +V++ +G + PG ID
Sbjct: 5 KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN- 166
H E G S AA+AGG T +D P + +
Sbjct: 65 DQVHF-REP-GLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWER-LLEKRQIGADT 121
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCK 225
+ +YGF T D + DE++ + + + K F+ G+ +++++ +E K
Sbjct: 122 AWANYGFFFGGTN-DNI--DEIKRV-DKHLVPGLKLFLGSSTGNMLVDNKETLE--KIFG 175
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGIT--GPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L H E + + ++ H L R ++ A+ LAE +N
Sbjct: 176 ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMN 235
Query: 284 TPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
L+++H+ + + A +R+ E V L D+ K +P
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDY--GRLGNRIK--WNPA 291
Query: 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWD 399
I+ +AL+AA+ G + ++ TDH +K + +G + + +
Sbjct: 292 IKKESDREALRAAVRNGRIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALL- 347
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 459
+ G S+ + V T+ A +F + ++G I G AD+++ +P+S ++A + S
Sbjct: 348 ELCNQGIFSIEEIVSKTAHIPATLFAI-EKRGYIRPGYYADLVLVDPSSPHTVSADNILS 406
Query: 460 RLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507
+ +EG V T G + + L + + FN
Sbjct: 407 LCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLF---FN 451
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 3e-62
Identities = 111/478 (23%), Positives = 181/478 (37%), Gaps = 97/478 (20%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LIK G V+ Q AD+ ++ ++ + P I + V ++DA G FV PG +D H HL
Sbjct: 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN-- 150
E G E + +G AA GG TT+ + + +
Sbjct: 62 R-E-PGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVL 119
Query: 151 --GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208
S+T G + + + ++G +F G
Sbjct: 120 PYASITTRQL-------------GKELV----------DFPAL-VKEGAFAF----TDDG 151
Query: 209 SFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR 263
+ ++ EG + + H E G A+ EG KR ELGI G
Sbjct: 152 VGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEG-KRSKELGIPG-------I 203
Query: 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--LVL 321
P + E R + LAE +V HV + +++ I A++AG V E V+ L+L
Sbjct: 204 PNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAE--VTPHHLLL 261
Query: 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH---------CAFN 372
+ + K M+PP+R++ +AL L G + + TDH
Sbjct: 262 TEDDI--PGNNAIYK--MNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQPME 317
Query: 373 STQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432
FGI G E L++ V++G ++ V + + FN+ G
Sbjct: 318 KA--PFGI-------VGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGT 366
Query: 433 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 490
+ AD+ I + +S EI S+ D + G +V G +T+ G V +E D+
Sbjct: 367 LKENGYADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGDK 424
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 201 bits (515), Expect = 2e-59
Identities = 114/480 (23%), Positives = 185/480 (38%), Gaps = 99/480 (20%)
Query: 54 KILIKGGTVVN-AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
L K G +N D+ V+DG + V NI D+ +V+D GK + PG +D H
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHV 60
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN 150
HL E G E + +G AA GG TT+ ++ + +N
Sbjct: 61 HLR-E-PGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 151 ----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
G++T G M + E + KE G +F
Sbjct: 119 VLPYGAITVRQA-------------GSEMT----------DFETL-KELGAFAF----TD 150
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + + +++ KR L + H E N V EG K + G+ G
Sbjct: 151 DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEG-KFSEKHGLNG------ 203
Query: 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--L 319
P + E R I LAE + +V HV + ++ I A++AG +V E V+ L
Sbjct: 204 -IPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAE--VTPHHL 260
Query: 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH---------CA 370
VL + + K M+PP+R ++AL L G + ++ TDH
Sbjct: 261 VLCEDDI--PSADPNFK--MNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQG 316
Query: 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 430
FGI G E L++ +V+ G I++ ++ + + A F +
Sbjct: 317 IERA--PFGI-------TGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGL--EA 365
Query: 431 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 490
G + G ADI I + EI + S+ + G + +G +TI GG++ W+ +
Sbjct: 366 GRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 5e-56
Identities = 107/474 (22%), Positives = 194/474 (40%), Gaps = 91/474 (19%)
Query: 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
K+++K G V++ D+ VE+G + + NI + +++DA G V PG ID
Sbjct: 47 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDI 105
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------- 147
H HL + G +D SG A+AGG TT+ +++++
Sbjct: 106 HVHLR-D-PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL 163
Query: 148 ----PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFF 203
P G++T G + G +A + + KE G +F
Sbjct: 164 CRVLPT-GTITKGRK-------------GKEIA----------DFYSL-KEAGCVAF--- 195
Query: 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGH 259
GS +++ ++ + + LG M H E + EG + LG++
Sbjct: 196 -TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEG-EVSALLGLSS---- 249
Query: 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG- 318
R P E R LA+ +++ HV + ++E I ++ G ++ E V+
Sbjct: 250 ---RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCE--VNPN 304
Query: 319 -LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
L+ + + + A+ ++PP+R AL + GI+ TDH + +K
Sbjct: 305 HLLFTEREV--LNSGANAR--VNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK- 359
Query: 378 FGIDDFRKIPNGI---EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 434
+ GI + + + G IS+ + + + ARI V G +
Sbjct: 360 ---ELVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTINPARIIGV--DLGTLK 413
Query: 435 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
+GS ADI IF+PN + + ++ S+ G+ +KGKV TI G++V+++
Sbjct: 414 LGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 5e-52
Identities = 101/486 (20%), Positives = 175/486 (36%), Gaps = 111/486 (22%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
ILI+ +V+A + ADV + +G +++++ G+ +V+D TG F+ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI----------- 147
L E G E +D FSG AA+ GG T + + +
Sbjct: 58 LR-E-PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARL 115
Query: 148 -PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
P +LT E G + ++ +E G
Sbjct: 116 HPA-AALTEKQE-------------GKTLT----------PAGLL-REAGAVLL----TD 146
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + +L G LG VHAE + +G LG+ G
Sbjct: 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDG-PLADLLGLPG------ 199
Query: 262 SRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315
PP E R + + + L+V H+ + +E + +A++AG V E
Sbjct: 200 -NPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAGLPVTAE-- 256
Query: 316 VSG--LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH----- 368
+ L L + L F K ++PP+R +AL L G L + TDH
Sbjct: 257 ATPHHLTLTEEAL--RTFDPLFK--VAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTL 312
Query: 369 ----CAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 424
FGI +E L++ + + V L + R+
Sbjct: 313 AEKEKDLLRA--PFGI-------PSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVL 363
Query: 425 NVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 484
+ + G++A +++ +P + + S+ + + G + G +T+ GR+
Sbjct: 364 GL--PPLHLEEGAEASLVLLSPKER-PVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRI 420
Query: 485 VWENDE 490
V E +
Sbjct: 421 VHEALK 426
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 7e-41
Identities = 56/422 (13%), Positives = 117/422 (27%), Gaps = 52/422 (12%)
Query: 43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVG 90
+ ++I +V+ AD+ ++DG + V+ N++VG
Sbjct: 56 SQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVG 115
Query: 91 DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150
+ L G V GGID H H + F SG + GGT
Sbjct: 116 PATEALAGEGLIVTAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGTGPADGTNATTI 172
Query: 151 GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210
+ + A+ M+ GF ++ + E G FK + +
Sbjct: 173 TPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI----EAGAIGFKIHEDWGTTP 228
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
+ L +H + + + M + EG
Sbjct: 229 SAINHAL----DVADKYDVQVAIHTDTLNEAGCVEDTMAAIA------GRTMHTFHTEGA 278
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
A + + + + V E +++ S
Sbjct: 279 GGGHAPDIIKVAGEHNILPA----------STNPTIPFTVNTEAEHMDMLMVCHHKDKSI 328
Query: 331 FVTAAKYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG 389
++ S A + L G + +D A + +
Sbjct: 329 KE-DVQFADSRIRP---QTIAAEDTLHDMGAFSITSSDSQAMGRVG-----EVITRTWQT 379
Query: 390 ---IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 446
++ + + ++ + Y+ + A + G++ VG AD+++++P
Sbjct: 380 ADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSP 439
Query: 447 NS 448
Sbjct: 440 AF 441
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 1e-36
Identities = 75/477 (15%), Positives = 132/477 (27%), Gaps = 93/477 (19%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKF 102
+L+ +++ AD+ V+DG +V V PN+ VG +V+ A GK
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGSLTAG----- 156
V GGID H H ALA G TT+ P GS
Sbjct: 129 VTAGGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177
Query: 157 --FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214
E K + ++ G E + G K +
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ----IDAGAAGLKIHEDWG----ATP 229
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
+ +H++ + + + + +EG
Sbjct: 230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL------RAINGRVIHSFHVEGAGGGH 283
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A + P + R I E + +V +
Sbjct: 284 APDIMAMAGHPNVLPSS--------TNPTRPFTVNTIDEHLDMLMVCHHL---KQNIPED 332
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN----STQKAFGIDDFRKIPNGI 390
+ S + + + GI+ ++ TD A + + D K
Sbjct: 333 VAFADSRIRPETIAAEDI--LHDLGIISMMSTDALAMGRAGEMVLRTWQTADKMK----- 385
Query: 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 450
++R L + S + YV + A + G+I G AD++++ P F
Sbjct: 386 KQRGPL-AEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEP-KFF 443
Query: 451 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW--ENDELNVVPGSGKYIEMRP 505
+ K + I GG + + D +P + R
Sbjct: 444 GV---------------------KADRVIKGGIIAYAQIGDPSASIPTPQPVM-GRR 478
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 5e-28
Identities = 66/439 (15%), Positives = 121/439 (27%), Gaps = 78/439 (17%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G VN ++ +++ + AV I+ + G +V G ID H H
Sbjct: 7 LLIKNGQTVNG---MPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174
F D+ + G T ID + + A+ + +
Sbjct: 64 ---FEKMALYYDYPD--EIGVKKGVTTVIDA----GTTGAENIHEFYDLAQQAKTNVFGL 114
Query: 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234
+ I+KW V DE+ + K + K + G K S +
Sbjct: 115 VNISKWGIVAQDELADLSKVQASLVKKAIQELPD--------FVVGIKARMSRTVIGDNG 166
Query: 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294
+ + Q+ E+ + G A + + F ++ +
Sbjct: 167 ITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATD 226
Query: 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354
+ +A G S + +
Sbjct: 227 KIKDFAWQAYNKGVV----------------------------FDIGHGTDSFNFHVAET 258
Query: 355 ALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYV 413
AL G+ + TD N NG + + + G + +
Sbjct: 259 ALREGMKAASISTDIYIRNR-------------ENGPVYDLATTMEKLRVVGY-DWPEII 304
Query: 414 RLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG 473
+ A F++ +KG + +G DAD+ IF G
Sbjct: 305 EKVTKAPAENFHL-TQKGTLEIGKDADLTIFTI----------QAEEKTLTDSNGLTRVA 353
Query: 474 ----KVEVTIAGGRVVWEN 488
+ TI GG++
Sbjct: 354 KEQIRPIKTIIGGQIYDNE 372
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 70/456 (15%), Positives = 148/456 (32%), Gaps = 89/456 (19%)
Query: 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGG 107
++ L++G + + I DV V +G ++AV NI + + V+D +G+ + PG
Sbjct: 5 TAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGF 64
Query: 108 IDPHTHLAM-EFMGSETIDDFFSGQAAALAGGTTMHI-----DFVIPINGSLTAGFEAYE 161
ID H HL T + G T + D + SL A A
Sbjct: 65 IDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALN 124
Query: 162 KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF 221
++ ++ M G + ++ ++ ++ S + L
Sbjct: 125 EEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISD--HRSAAPDVYHLANMA 182
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
+ G L G+ + + G + + + +
Sbjct: 183 AESRVGGLLG------------GKPGVTVFHM----GDSKK-----ALQPIYDLLENCDV 221
Query: 282 VNTPLYVVHV-MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
+ L HV ++ E+ + + G + +T++ +
Sbjct: 222 PISKLLPTHVNRNVPLFEQALEFARKGGTI--------------------DITSS---ID 258
Query: 341 PPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI--EERMHLV 397
P+ + G +A+QA + + L + + + G+ E +
Sbjct: 259 EPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDD-----EGNLTHIGVAGFETLLET 313
Query: 398 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSH 457
+V+ S++D +R ++ A N+ KG IL G+DAD+++ P I
Sbjct: 314 VQVLVKDYDFSISDALRPLTSSVAGFLNL-TGKGEILPGNDADLLVMTPE--LRIEQ--- 367
Query: 458 HSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 493
A G+++ ++ + V
Sbjct: 368 --------------------VYARGKLMVKDGKACV 383
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 9e-26
Identities = 68/473 (14%), Positives = 135/473 (28%), Gaps = 91/473 (19%)
Query: 44 GPQCGIQSSSKILIKGGTVV---NAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDAT 99
G Q + IL+ V Q D+ + DG + AV + D + +DA
Sbjct: 6 GEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAK 65
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G F+ PG +D H H+ +I G T +D
Sbjct: 66 GAFISPGWVDLHVHI-WHGGTDISIR----PSECGAERGVTTLVDAGSA----------- 109
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIE 219
++ + + + G+ + + I+ + ++E
Sbjct: 110 -------GEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILE 162
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G K ITG G ++A
Sbjct: 163 CYAE--------------NSEHIVGLKVRASHVITGSWGV----------TPVKLGKKIA 198
Query: 280 EFVNTPLYVVHVMSMDA-MEEIAKARKAGQRV--IGEPVVSGLVLDDSWLWHS--DFVTA 334
+ + P+ +VHV A +E+ + G V +++D L++
Sbjct: 199 KILKVPM-MVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGE 257
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQL-VGTDHCAFNSTQKAFGIDDFRKIPNGIEER 393
+ AS K +AA+A G+L + TD + +
Sbjct: 258 GIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWD-------------- 303
Query: 394 MHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 453
+ ++ + V + A + + + + VG AD +F+
Sbjct: 304 LATTMSKLLSVDM-PFENVVEAVTRNPASVIRL-DMENRLDVGQRADFTVFDLV------ 355
Query: 454 ARSHHSRLDTNVYEGRRVKGK----VEVTIAGGRVVWENDELNVVPGSGKYIE 502
+ L+ G + K + G + + + P + K +
Sbjct: 356 ----DADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI---PRARKLVR 401
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 85.1 bits (210), Expect = 6e-18
Identities = 79/438 (18%), Positives = 140/438 (31%), Gaps = 95/438 (21%)
Query: 52 SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
S KIL K TV + DV V +G V V NI D +++D TGKF+ PG +D
Sbjct: 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIED-PDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM--EFMGSETIDDFFSGQAA-------------------ALAGGTTMHIDFVIPI 149
H+H+ + E +G D + ALAGG T ++P
Sbjct: 63 HSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSV--MIVPG 120
Query: 150 NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209
+ + G + +E + + + G N + + K +
Sbjct: 121 SANPVGGQGSV------------IKFRSIIVEECIVKDPAGLKMAFGENPKRVYGERKQT 168
Query: 210 F---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
M ++ + F + K+ + + G E +M +R
Sbjct: 169 PSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVG-EMVLRKKIPARMHA 227
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
+ AIR+AE L + H + + + + V+ P ++
Sbjct: 228 HRADDILTAIRIAEEFGFNLVIEHGTEAYKISKVL---AEKKIPVVVGP-------LLTF 277
Query: 326 -----LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
L T AK L G+L + DH
Sbjct: 278 RTKLELKDLTMETIAK---------------LLKD---GVLIALMCDHPVIPL------- 312
Query: 381 DDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDAD 440
T + G D +++ + A+I + R G+I G DAD
Sbjct: 313 ---EFATVQAA--------TAMRYG-AKEEDLLKILTVNPAKILGLEDRIGSIEPGKDAD 360
Query: 441 IIIFNPNSSFEITARSHH 458
+++++ F++ +
Sbjct: 361 LVVWS-GHPFDMKSVVER 377
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 2e-17
Identities = 69/458 (15%), Positives = 124/458 (27%), Gaps = 109/458 (23%)
Query: 53 SKILIK-GGTVVNAHHQ----QIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMP 105
SK +IK G +V+ + Q + VEDG++ A+ + D ++DA G V P
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE---- 161
G +D H H+ ++AL GG T I P +
Sbjct: 62 GLLDTHVHV--SGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAI 119
Query: 162 --KKAKNSCMDYGFHM---AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216
K+ + G + A+ + ++ M KE G+ G+ N E
Sbjct: 120 TLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKE-GVWIVGEVG--LGTIK-NPED 175
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
+ G +H G ++ + I +
Sbjct: 176 AAPMVEWAHKHGFKVQMHTG-GTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVD 234
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEI---AKARKAGQRVI-GEPVVSGLVLDDSWLWHSDFV 332
R+ + + + +V + + + A + RVI G SG L + +
Sbjct: 235 RIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQ 294
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEE 392
A+ + P A+ A T + +G++
Sbjct: 295 IASMSDIDPE-------VAVCMA----------TGNST-----AVYGLN----------- 321
Query: 393 RMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI 452
G I G +AD+II +
Sbjct: 322 -------------------------------------TGVIAPGKEADLIIMDTPLGSVA 344
Query: 453 TARSHHSRLDTNVYEGRRVKG--KVEVTIAGGRVVWEN 488
+ + V + G V
Sbjct: 345 ----------EDAMGAIAAGDIPGISVVLIDGEAVVTK 372
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 6e-17
Identities = 67/451 (14%), Positives = 126/451 (27%), Gaps = 51/451 (11%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+LI GGT+V+ ++ AD+ + ++ +V + D +V+DA G +V PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
H+ S ++ A G TT+ D N G K +N +
Sbjct: 97 HI----ESSMITPAAYA-AAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151
Query: 173 F---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + + ++ I M +G D + +
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIE-RDPRMSGIVQA 210
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
+ L H + G++ E + +A+
Sbjct: 211 GLAAEKLVCGH--ARGLKNADLNAFMAAGVSSDH------------ELVSGEDLMAKLRA 256
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+ + E A L T + +
Sbjct: 257 GLTIELRGSHDHLLPEFVAA---------------LNTLGHLPQTVTLCTDDVF-PDDLL 300
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE 403
+ G + ++ + G+ N+ Q G D I G R +V +
Sbjct: 301 QGGGLDDVVRRLVRYGLKPEWALRAATLNAAQ-RLGRSDLGLIAAG--RRADIVVFEDLN 357
Query: 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 463
E R+ P ++ + + N F + ++ RL T
Sbjct: 358 GFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLRMAN-DFLVKSQGAKVRLAT 416
Query: 464 NVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494
G+ E + G VV +
Sbjct: 417 IDRPRFTQWGETEADVKDGFVVPPEGATMIS 447
|
| >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 8e-16
Identities = 62/416 (14%), Positives = 118/416 (28%), Gaps = 52/416 (12%)
Query: 46 QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKV 95
Q +++ +V+ AD+ V+DG + A+ N +G +V
Sbjct: 59 QMLAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEV 118
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTA 155
+ A GK V GGID H H E SG + GGT
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEE---ALVSGVTTMVGGGTGPAAGTHATTCTPGPW 175
Query: 156 GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDE 215
+ A + ++ G E G+ K + + D
Sbjct: 176 YISRMLQAADSLPVNIGLLGKGNVSQPDALREQV----AAGVIGLKIHEDWGATPAAID- 230
Query: 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275
+ +H++ + + + + G EG A
Sbjct: 231 ---CALTVADEMDIQVALHSDTLNESGFVEDTLAAI------GGRTIHTFHTEGAGGGHA 281
Query: 276 IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335
+ P + + + + ++ + + +D
Sbjct: 282 PDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAED------------ 329
Query: 336 KYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFN----STQKAFGIDDFRKIPNGI 390
V R A + L G L +D A + + + K+ G
Sbjct: 330 --VAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRG- 386
Query: 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 446
L +T ++ V Y+ + A + G+I VG AD+++++P
Sbjct: 387 ----ALAEETG-DNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSP 437
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + L + G +++ H + ++ +EDG + V + V+D GK +MPG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALA 136
ID H H+ + + A
Sbjct: 62 IDLHVHVVAIEFNLPRVATLPNVLVTLRA 90
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+PG
Sbjct: 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPGL 65
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF 157
+D H H E+ + A+ ++ + +GF
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYV--------TFKSGF 107
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-12
Identities = 64/472 (13%), Positives = 127/472 (26%), Gaps = 96/472 (20%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107
+ +++ I + + + ++++DG + A+ V LDA V+P
Sbjct: 4 MANNALQTIINARL--PGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPF 61
Query: 108 IDPHTHLAMEFMGSE-----------------------TIDDFFSGQAAAL----AGGTT 140
++PH HL + T DD L A G
Sbjct: 62 VEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQ 121
Query: 141 M---HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
H+D +L A E ++ A + + + G
Sbjct: 122 HVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGA 181
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGP 256
+ ++ + E L + F + L VH E D + + L
Sbjct: 182 DVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEG 241
Query: 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316
G + H +M + R++ +
Sbjct: 242 MGA-------------------------RVTASHTTAMHSYNG--AYTSRLFRLLKMSGI 274
Query: 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQK 376
+ + + ++ P R K + + V H
Sbjct: 275 NFVANPLVNIHL-----QGRFDTYPKRRGITRVKEMLESGIN-----VCFGHDGVFDPWY 324
Query: 377 AFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 436
G + + +H+ G + D + L + AR N+ + I G
Sbjct: 325 PLGTANML-------QVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNL--QDYGIAAG 375
Query: 437 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
+ A++II + F+ R R ++ GG+V+
Sbjct: 376 NSANLIILPAENGFDALRRQVPVR----------------YSVRGGKVIAST 411
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + +++GG V++ + V ++ +V V + + +D GK VMPG
Sbjct: 2 SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61
Query: 108 IDPHTHLAME 117
ID H H+
Sbjct: 62 IDCHVHVLAS 71
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 4e-12
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+ + + + D+ + ++ ++ I G +DA G V PG +D HTH+
Sbjct: 7 LIIRNAYL--SEKDSVYDIGIVGDRIIKIEAKIE-GTVKDEIDAKGNLVSPGFVDAHTHM 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGG 138
F + F +
Sbjct: 64 DKSFTSTGERLPKFWSRPYTRDAA 87
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 55 ILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + +++ AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHLAMEFM-GSETIDD 126
H HL M ++
Sbjct: 62 SHQHLYEGAMRAIPQLER 79
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 51 SSSKILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+S LIK ++ +I AD+ + +G + + D V+ ++PG +
Sbjct: 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLM 61
Query: 109 DPHTHLAME 117
D H H+
Sbjct: 62 DSHVHIVGN 70
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I ++ + V +E+G + V G+ LD +GK VMP + HT
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQ----GEVKVDLDLSGKLVMPALFNTHT 56
Query: 113 HLAMEFM 119
H M +
Sbjct: 57 HAPMTLL 63
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 51 SSSKILIKGGTVVNAHHQQI---------ADVYVEDGIVVAVQPNINVGDDVKVLDATGK 101
+ LI+ + + D+ + + A+ + ++DAT
Sbjct: 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGE-TIVDATDC 66
Query: 102 FVMPGGIDPHTHLAMEFM-GSETIDD 126
+ P ++ H HL + G D
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLD 92
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 50 QSSSKILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVG--DDVKVLDATGKFV 103
QS + +I ++ + + + + + DG + A+ P + + + L+ +
Sbjct: 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVL 62
Query: 104 MPGGIDPHTHLAMEFM 119
MPG I+ H H AM +
Sbjct: 63 MPGLINLHGHSAMSLL 78
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTVV--NAHHQQI--ADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGI 108
+L+ +V + + + DG + V P ++ + G + PG +
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69
Query: 109 DPHTHLAM 116
+ H H AM
Sbjct: 70 NAHGHSAM 77
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 55 ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGG 107
+LI+ G VV H + D V V +G++VAV P + + + +MPG
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75
Query: 108 IDPHTHLAMEFM 119
++ HTH M +
Sbjct: 76 VNAHTHNPMTLL 87
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I GG +++ ++ AD+ V DG + A+ DA+GK V PG ID H
Sbjct: 9 FKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPAR-HAWDASGKIVAPGFIDVHG 67
Query: 113 H 113
H
Sbjct: 68 H 68
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
E+ +++ V + AR+F +G + G+ AD+++F+P+ + R+
Sbjct: 391 EARLMTLEQAVARMTALPARVFGF-AERGVLQPGAWADVVVFDPD---TVADRATWDEPT 446
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 496
G + + G V+ + PG
Sbjct: 447 ------LASVG-IAGVLVNGAEVFPQPPADGRPG 473
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 31 SNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV--------NAHHQQIAD--VYVEDGIV 80
SN + D+ S Q ++ + + I ++ N + D + ++DGI+
Sbjct: 1 SNAMSKDSESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGII 60
Query: 81 VAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAM 116
+A++P + + LD + +MPG ++ H H AM
Sbjct: 61 LAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAM 97
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++ GGTV++ ++ADV V + AV ++ D GK V PG ID HT
Sbjct: 23 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRI-DVAGKVVSPGFIDSHT 81
Query: 113 H 113
H
Sbjct: 82 H 82
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 462
+ G + V + A F + +G + G AD+++F+P + +
Sbjct: 405 DLGLFPLETAVWKMTGLTAAKFGL-AERGQVQPGYYADLVVFDPA---TVADSATFEHPT 460
Query: 463 TNVYEGRRVKGKVEVTIAGGRVVWENDEL-NVVPG 496
R G + G VWE+ G
Sbjct: 461 ------ERAAG-IHSVYVNGAAVWEDQSFTGQHAG 488
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 51 SSSKILIKGGTVV--NAHHQQI-----ADVYVEDGIVVAVQPNINV----GDDVKVLDAT 99
++ L + + N I A + V +G + P ++ + D
Sbjct: 13 GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCG 72
Query: 100 GKFVMPGGIDPHTHLAM 116
G+++ P ID HTHL
Sbjct: 73 GRWITPALIDCHTHLVF 89
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
S++ + + + + V + + AV P ++ ++ V+D G + PG ID
Sbjct: 1 SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60
Query: 110 PHTHLAM--EFMGSETIDDFFSGQAAALAGGTT 140
+ F T + + A L G T
Sbjct: 61 LQLNGCGGVMFNDEITAETIDTMHKANLKSGCT 93
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447
VE I++ + +R+ + A+ V + G I G A++ +F+ +
Sbjct: 319 NTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRD 366
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 52 SSKILIKGGTVVNAH-----HQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVM 104
+ T+V + + V DG + V P+ ++ + LD TGK VM
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVM 70
Query: 105 PGGIDPHTHLAME 117
PG I+ HTHL +
Sbjct: 71 PGLINAHTHLFSQ 83
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAM 116
A V + + +V + +++D +G+ V PG +DPHTHL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVF 85
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 52 SSKILIKGGTVV-----NAHHQQI--ADVYVEDGIVVAVQP--NINVGDDVKVLDATGKF 102
+ + + T A + + + V +G + A+ P ++ D GK
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL 63
Query: 103 VMPGGIDPHTHLAM 116
V PG ID HTHL
Sbjct: 64 VTPGLIDCHTHLIF 77
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 57 IKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH-- 113
+ G + H V + DG++ +V P + +++ G + PG ID +
Sbjct: 4 LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63
Query: 114 ---LAMEFMGSETIDDFFSGQAAALAGGTT 140
+ + +++ Q A G T
Sbjct: 64 GGVQFNDTAEAVSVETLEIMQKANEKSGCT 93
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447
+VE I++ + +R+ + AR V R G + G A++ F P+
Sbjct: 319 NLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPD 366
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 49 IQSSSKILIKGGTVVNAHHQQI-----ADVYVEDGIVVAVQPNINVG-DDVKVLDATGKF 102
+ + + KG + + + + V DG + +V N+ ++D
Sbjct: 5 EKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNI 64
Query: 103 VMPGGIDPHTHLAM 116
++PG D H H +
Sbjct: 65 IIPGMNDLHAHASQ 78
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 56/298 (18%)
Query: 56 LIKGGTVVNAHHQQIAD--VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPH 111
L+ + + V V V A + + G + P ++ H
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAPPPVNAH 99
Query: 112 THLAM--------EFMG--------SETIDDFFSGQAAA---LAGGTTMHIDFV------ 146
THL M + + + QA A G D V
Sbjct: 100 THLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWAPEVM 159
Query: 147 ------IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF 200
++G+L + + +W + + + + ++
Sbjct: 160 DALLAREDLSGTLYFEVLNPFPDKADEVFAAA-RTHLERWRRLERPGLRLGL---SPHT- 214
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGD---AVFEGQKRMIELGITGP 256
F ++ L+ G +H AE+ G + + +
Sbjct: 215 --------PFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPAL 266
Query: 257 EGHALSRPPLLEGEATTRAIRLAE---FVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311
H L+ E +R + + +VH++++ ++IA+ +AG V+
Sbjct: 267 YPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTP-DDIARVARAGCAVV 323
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGID 109
+ +LIK +V + + V + DG + V ++ ++PG ID
Sbjct: 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMID 61
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
H H + ++ L GTT
Sbjct: 62 IHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 25/93 (26%)
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 459
M E S TD +TS A+ ++ RKG++ VG DAD++I + +
Sbjct: 327 HMREFTNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD------------ 374
Query: 460 RLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492
+V +TI G + + + E +
Sbjct: 375 -------------CEVILTICRGNIAFISKEAD 394
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAV---QPNINVGDDVKVLDATGKFVMPGGID 109
+++ G + ++ +++ + + DG++ AV + + + K +D K +PG D
Sbjct: 6 MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65
Query: 110 PHTHL 114
H H+
Sbjct: 66 SHIHV 70
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 13 LTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTV--VNAHHQQI 70
L S+ + + + + G + GT+ + +++
Sbjct: 3 LASLPISNFFTFNHQSTLFTKVKNFMG-------VKHIGDCMKALINGTIYTSFSPVKKV 55
Query: 71 ADVYVEDGIVVAV-----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
+ + + + V+ I +++D GKFVMP D H HL
Sbjct: 56 SGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYV-EDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDP 110
+IK ++ I D V D + A+ N+ + V ++PG +P
Sbjct: 2 RIIKPFAILTPQ-TIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANP 60
Query: 111 HTHLAM 116
H HL
Sbjct: 61 HLHLEF 66
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 71 ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPHTHLAM-EFMGS 121
+ V DG++ A P + V++ + ++PG ID H HL +G+
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGA 90
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
+ + G++ +++ + G D D V+ G + H+H M
Sbjct: 29 VRIGIAGGVICSIETGVLAGPD----DERQSVVVAGMANLHSHAFQYGM 73
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 50 QSSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
++++ +V+ + DV +E+G +V V+ +MPG +
Sbjct: 8 HHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRE---------CIPRGVLMPGFV 58
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
DPH H +G++T++ FS L G T
Sbjct: 59 DPHIHGV---VGADTMNCDFSEMEEFLYSQGVT 88
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Length = 453 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
L+ G N DG++ ++P + + G V+PG + H+H
Sbjct: 10 LLPEGWARNV-----RFEISADGVLAEIRP----DANADGAERLGGAVLPGMPNLHSHAF 60
Query: 116 MEFM 119
M
Sbjct: 61 QRAM 64
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 100.0 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 100.0 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 100.0 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 100.0 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 100.0 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 100.0 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 100.0 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 100.0 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 100.0 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 100.0 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 100.0 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 100.0 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 100.0 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 100.0 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 100.0 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 100.0 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 100.0 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 100.0 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 100.0 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 100.0 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 100.0 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 100.0 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 100.0 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 100.0 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 100.0 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 100.0 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 100.0 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 100.0 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 100.0 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 100.0 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 100.0 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 100.0 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 100.0 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 99.98 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 99.98 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 99.98 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 99.97 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 99.97 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.97 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.97 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.93 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.55 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 99.17 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.12 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 98.99 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 98.96 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.89 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.81 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.8 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.73 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.7 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.63 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.62 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 98.58 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.52 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 98.51 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.51 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.49 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 98.39 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 98.37 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.36 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.31 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 98.3 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 98.21 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 98.2 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 98.17 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 98.16 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 98.13 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 97.99 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.88 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.78 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 97.78 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 97.4 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 97.37 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 97.16 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 97.12 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 96.86 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 96.78 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 96.76 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 96.36 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 96.17 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 95.83 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 92.92 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 92.07 |
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-62 Score=507.52 Aligned_cols=461 Identities=48% Similarity=0.825 Sum_probs=412.6
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
+++|+|++|++++....++|+|+||+|++|++... +.++||++|++|+|||||+|+|+.....+...++++....+.
T Consensus 2 ~~~i~~~~v~~~~~~~~~~v~I~~G~I~~i~~~~~---~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~a 78 (490)
T 3dc8_A 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS---GAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRA 78 (490)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCC---CSEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred cEEEEccEEECCCCceeeeEEEECCEEEEeccCCC---CCeEEECCCCEEecCEEeeccccCCCCCCCCCHHHHHHHHHH
Confidence 58999999999888788999999999999998653 578999999999999999999998874444678889999999
Q ss_pred HHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcC
Q 009410 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (535)
++++||||++++....+. ...+.++.+.....+..++++++........+..+++..+.++.|+..+|+|+++.+....
T Consensus 79 a~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~~~~d~~~~~~~~~~~~~~l~el~~l~~~~G~~~~k~~~~~~~~~~~ 158 (490)
T 3dc8_A 79 ALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMV 158 (490)
T ss_dssp HHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTTCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESCSTTTTBC
T ss_pred HHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhcccceeeeEEEEecCcHHHHHHHHHHHHhCCCCEEEEEecCCCCccC
Confidence 999999999999654443 5677777777766666778888877776666667888888756899999999998887788
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
+.+.+.++++.|+++|.++.+|+++...+......+...|..++..|...+|...+...+.+.+.++...+.++|+.|.+
T Consensus 159 ~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~lhi~HvS 238 (490)
T 3dc8_A 159 DDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238 (490)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 99999999999999999999999998887777778888899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCC
Q 009410 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (535)
Q Consensus 293 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~ 372 (535)
+.+..+.++.+++.|++|+++++++++.++.+.+...+|..+..++++||+|...++.++++++++|...+++|||.|+.
T Consensus 239 t~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~~ 318 (490)
T 3dc8_A 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFT 318 (490)
T ss_dssp SHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCCC
T ss_pred CHHHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCCC
Confidence 99999999999999999999999999999999887665543578899999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCc
Q 009410 373 STQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 449 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~ 449 (535)
...+..+.++|..+|+ |++..++.++..++..+++|++++++++|.|||++||+++++|+|++|+.|||||+|.+..
T Consensus 319 ~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~~G~~ADlvv~d~~~~ 398 (490)
T 3dc8_A 319 TEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRS 398 (490)
T ss_dssp HHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEE
T ss_pred HHHhhccCCChhhCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCcCCEEEEecCcc
Confidence 9988776678999987 8999999999887888899999999999999999999987899999999999999999999
Q ss_pred eeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCcccccCchhhh
Q 009410 450 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKAD 517 (535)
Q Consensus 450 ~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (535)
+.++.+++.++..|+||+|..+.++|.+||++|++||++|+++...+.|++++++++...+.++.+.+
T Consensus 399 ~~i~~~~~~s~~~~sp~~g~~~~g~v~~t~~~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 466 (490)
T 3dc8_A 399 KTISAKTQQSAIDYNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRRDPFPAVSTALSTWK 466 (490)
T ss_dssp EECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCSCCHHHHHHHHHH
T ss_pred eEechhhccccCCCCcccCcEEeeEEEEEEECCEEEEECCEEcccCCCceeccCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999887655444443
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-59 Score=484.35 Aligned_cols=453 Identities=44% Similarity=0.714 Sum_probs=397.6
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
+++|+|++|++++....++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..++.+....+.+....+.
T Consensus 2 ~~~i~n~~v~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~~ 80 (461)
T 3sfw_A 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQ-ATDAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKA 80 (461)
T ss_dssp EEEEESCEEECSSCEEECEEEEETTEEEEEESCCC-CSSCEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred cEEEECeEEECCCCcEEEEEEEECCEEEEEeCCCC-CCCCeEEECCCCEEEeeeEEeEeccCcCCCCcccHhHHHHHHHH
Confidence 58999999999887788999999999999998653 34689999999999999999999998765556677888888999
Q ss_pred HHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCc
Q 009410 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (535)
++++||||++++...... ...+.++...... ....++++++........+..++++++.++.|+..+|+++++.+...
T Consensus 81 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ik~~~~~~~~~~ 160 (461)
T 3sfw_A 81 AAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLM 160 (461)
T ss_dssp HHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEEESSSTTTTB
T ss_pred HHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCcc
Confidence 999999999998654332 5666666655554 34667777777666566777888888883389999999999877778
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+.+.+.++++.|+++|+++.+|+++........+.+...|...+..|...+|...+..++.+++.++...+.++|+.|+
T Consensus 161 ~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~hi~H~ 240 (461)
T 3sfw_A 161 ADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240 (461)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 89999999999999999999999999888887777888889888888999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
++.+..+.++.+++.|++|+++.++++++++.+.+....+ .+..++++||+|...++.++++++++|++++++||+.|+
T Consensus 241 s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~-~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~ 319 (461)
T 3sfw_A 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDF-EGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPF 319 (461)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTT-GGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred CcHHHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCccc-cCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCC
Confidence 9999999999999999999999999999999988765433 246788999999999999999999999999999999998
Q ss_pred Chhh-hhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCC
Q 009410 372 NSTQ-KAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447 (535)
Q Consensus 372 ~~~~-~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~ 447 (535)
.... +..+.++|..+|+ |++..+..+++.++..+++|++++++++|.|||+++|+++++|+|++|+.|||||+|.+
T Consensus 320 ~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~~Ad~~~~d~~ 399 (461)
T 3sfw_A 320 NFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPT 399 (461)
T ss_dssp CTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTSBCCEEEEEEE
T ss_pred CchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCccCCCCcCCEEEEcCC
Confidence 7433 3333457888886 78889999887788888899999999999999999999888999999999999999999
Q ss_pred CceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCcc
Q 009410 448 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY 508 (535)
Q Consensus 448 ~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~~ 508 (535)
.++.++.+++.+...|+||+|..+.++|.+||++|++||++|+++...+.|+++++++.+|
T Consensus 400 ~~~~~~~~~~~~~~~~sp~~g~~~~~~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~~~~~~ 460 (461)
T 3sfw_A 400 VQRTISVETHHMNVDYNPFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKRSTFAR 460 (461)
T ss_dssp EEEECCTTTCCSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCCCCC
T ss_pred CCEEEchHHcccccCCCCCCCCEecceEEEEEECCEEEEECCeeccCCCCceEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999888899999887765
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-57 Score=473.78 Aligned_cols=470 Identities=51% Similarity=0.875 Sum_probs=395.5
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
..+++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+...+.+..+.++++...
T Consensus 7 ~~~~lI~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~ 86 (521)
T 2ftw_A 7 TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGT 86 (521)
T ss_dssp CCCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHH
T ss_pred cCCEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEeeecccCcCCCCccCHHHHHHHH
Confidence 46799999999998777789999999999999986543445789999999999999999999987644445667788888
Q ss_pred HHHHhCCcEEEeccccCCC-CChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC
Q 009410 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (535)
+.++++||||++|+..+.. ....+.++.+.... .....+++++......+.+..+++.++.++.|+..+|+++.+.+.
T Consensus 87 ~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~l~~l~~~~G~~~~k~~~~~~~~ 166 (521)
T 2ftw_A 87 QAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNS 166 (521)
T ss_dssp HHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEEESSCTTT
T ss_pred HHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCCChhHHHHHHHHHHhCCCCEEEEEeccCCC
Confidence 9999999999999865432 24566666555443 234456666666555555566777777756799999999887777
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
...+.+.++++++.|+++|+++.+|+++........+.+.+.|+.++.+|...++...+...+.+++.++...+.++++.
T Consensus 167 ~~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~hi~ 246 (521)
T 2ftw_A 167 FMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIV 246 (521)
T ss_dssp TBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 78899999999999999999999999987666677788889999999888888888888888889999999999999999
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCC-cccHHHHHHHHhcCCeEEEeCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA-SGHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
|+++....+.++.+++.|+.++++++++++.++...+...+|..+..++++||.|. ..+.+++++++..|...++|||+
T Consensus 247 h~ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~ 326 (521)
T 2ftw_A 247 HVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDN 326 (521)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCB
T ss_pred ecCcHHHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCC
Confidence 99987777889999999999999888888888776665444444455678899998 57788999999999999999999
Q ss_pred CCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEc
Q 009410 369 CAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld 445 (535)
.++....+....++|..+|+ |++..+...+..+++.++++++++++++|.|||+++|+++++|+|++|++|||||||
T Consensus 327 ~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv~d 406 (521)
T 2ftw_A 327 CTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWD 406 (521)
T ss_dssp CCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEE
T ss_pred CCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEEEe
Confidence 98887665544457777776 778888888877888888999999999999999999998789999999999999999
Q ss_pred CCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCcccccCchhhhHHHh
Q 009410 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYL 521 (535)
Q Consensus 446 ~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (535)
.+..+.++.+++.+...|+||+|+.+.++|..||++|++||++|+++...+.|++++++++.+++.++.++++...
T Consensus 407 ~~~~~~i~~~~~~~~~~~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 482 (521)
T 2ftw_A 407 PNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRDKVRN 482 (521)
T ss_dssp EEEEEECCTTTCCCSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCSSCGGGTTHHHHHHHHC
T ss_pred CCCCEEEChHHccccCCCCCcCCCEeeeeEEEEEECCEEEEECCeecccCcCceEecCCCCCchHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999987889999999998888888876666443
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-56 Score=462.11 Aligned_cols=450 Identities=36% Similarity=0.624 Sum_probs=372.7
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~ 134 (535)
++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+...+.+...+++++...+.+
T Consensus 2 ~li~n~~vv~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 81 (458)
T 1gkp_A 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAA 81 (458)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECEEEEEECSSCEETTEECSCCHHHHHHHH
T ss_pred EEEEeeEEECCCCceEeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEecccCCCcCCCCCcCHhHHHHHHHHH
Confidence 68999999998766788999999999999986543445789999999999999999999986543444677787778888
Q ss_pred HhCCcEEEeccccCCC-CChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcC
Q 009410 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (535)
Q Consensus 135 l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (535)
+++||||++|+..... ....+.++...+.. .....+++++........+..++++++. +.|+..+|+++++++....
T Consensus 82 ~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 160 (458)
T 1gkp_A 82 LMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGV 160 (458)
T ss_dssp HHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHH-HTTCCEEEEEECSTTTTBC
T ss_pred HhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCCchhhHHHHHHHH-HhCCCEEEEEeccCCCcCC
Confidence 9999999999865422 24556666554432 2345566666554445555677788877 6699999999888776778
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc
Q 009410 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (535)
Q Consensus 213 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~ 292 (535)
+.+.+.++++.|+++++++.+|+++........+.+...|...+.+|...+|...+.+.+.+++.++...+.++++.|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~~ 240 (458)
T 1gkp_A 161 DDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240 (458)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCC
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999887776666677788899998888888898888888999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCC
Q 009410 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (535)
Q Consensus 293 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~ 372 (535)
..+..+.++.+++.|+.++++.+++++++++..+....| .+..+++.||.|....++++++++++|+++++|||+.+++
T Consensus 241 ~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~-~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~ 319 (458)
T 1gkp_A 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFD 319 (458)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHH-HHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCC
T ss_pred CHHHHHHHHHHHHcCCeEEEEecccceeeCHHHhccccc-CCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCC
Confidence 987778899999999999888888888887765532211 1234456789999888999999999999999999998887
Q ss_pred hhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCc
Q 009410 373 STQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 449 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~ 449 (535)
...+..+.+.|...|. |+++.+..+++++++.+++|++++++++|.|||++||+++++|+|++||+|||||+|.+..
T Consensus 320 ~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~ 399 (458)
T 1gkp_A 320 TEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYR 399 (458)
T ss_dssp HHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEETTCC
T ss_pred HHHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCEEEEeCCCC
Confidence 6654433346666665 6788888888777777679999999999999999999977899999999999999999999
Q ss_pred eeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCC
Q 009410 450 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 506 (535)
Q Consensus 450 ~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~ 506 (535)
+.++.+++.+...|+||+|..+.++|+.||++|++||++|+++...+.|++++++.|
T Consensus 400 ~~~~~~~~~~~~~~~p~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~ 456 (458)
T 1gkp_A 400 GTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPM 456 (458)
T ss_dssp EECCGGGCCSSSSCCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCCCCC
T ss_pred eEEchHHcccccCCCccCCCEEeeEEEEEEECCEEEEECCeeccCCCCceeccCcCC
Confidence 999999999999999999999999999999999999999999987767999988765
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=468.51 Aligned_cols=451 Identities=32% Similarity=0.536 Sum_probs=371.1
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CCCchhhhHHHH
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSGQ 131 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~~~~~~~~~~~ 131 (535)
++++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..... +..+++++....
T Consensus 3 m~~li~n~~vv~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~~~~ 82 (559)
T 2fty_A 3 YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHAT 82 (559)
T ss_dssp EEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECEEECCBCCCCTTCTTSCCSCCHHHHH
T ss_pred ceEEEECcEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEEcCEEeeccCcCccccccCCCHHHHHHHH
Confidence 5789999999998877789999999999999986432234689999999999999999999987631 223667788888
Q ss_pred HHHHhCCcEEEeccccCC---CC-C-hHHHHHH-HHHHhc-ccccccceeeeeecC---Chh---hH-HHHHHHHHHcCC
Q 009410 132 AAALAGGTTMHIDFVIPI---NG-S-LTAGFEA-YEKKAK-NSCMDYGFHMAITKW---DEV---VS-DEMEVMVKEKGI 197 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~---~~-~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~---~~~---~~-~~~~~~~~~~g~ 197 (535)
+.++++||||++|+.... .. . ..+.+.. ...... ...++++++...... ..+ .. +++..+.++.|+
T Consensus 83 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~G~ 162 (559)
T 2fty_A 83 RSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGV 162 (559)
T ss_dssp HHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcceeEEEeeeeeccCcCCCchhhhhHHHHHHHHHHHCCC
Confidence 899999999999997543 22 2 3334400 022222 344555555443333 233 45 677777745699
Q ss_pred CEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHH
Q 009410 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (535)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (535)
..+|+++.+++ ..++.+.++++++.|+++|+++.+|+++...+......+.+.|....+.|...+|...+...+.+++.
T Consensus 163 ~~iki~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i~ 241 (559)
T 2fty_A 163 SSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAIT 241 (559)
T ss_dssp CEEEEESSSTT-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHHH
T ss_pred CEEEEEecCCC-CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHHH
Confidence 99999998876 67899999999999999999999999888776666666778899888888889999999999999999
Q ss_pred HHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCccccc-------------------------C--cC
Q 009410 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW-------------------------H--SD 330 (535)
Q Consensus 278 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-------------------------~--~~ 330 (535)
+++..+.++++.|++..+..+.++.+++.|+.|+++.++++++++.+.+. . ..
T Consensus 242 la~~~g~~vhi~H~s~~~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~ 321 (559)
T 2fty_A 242 LATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDR 321 (559)
T ss_dssp HHHHTTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTCT
T ss_pred HHHHhCCCEEEEcCCCHHHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccccCccccccccccccCcc
Confidence 99999999999999998878899999999999999999998888766551 0 11
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhh-------------hcCCCCcccCcc---hHHHHH
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQK-------------AFGIDDFRKIPN---GIEERM 394 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~-------------~~~~~~~~~~~~---g~~~~l 394 (535)
| .+..+++.||+|...++.++++++++|+++++|||+.|++...+ ..+..+|..+|+ |+++.+
T Consensus 322 ~-~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~l 400 (559)
T 2fty_A 322 F-IGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRM 400 (559)
T ss_dssp T-GGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHH
T ss_pred c-cccCcEECCCCCCHHHHHHHHHHHhcCceEEEEeCCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHHH
Confidence 1 24567889999999999999999999999999999988765532 111247877777 889999
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHhHHHHHHcCCCCCCccccCC-CCccEEEEcCCC--------ceeeecCCccccCCCC
Q 009410 395 HLVWDTMVESGQI-SVTDYVRLTSTECARIFNVYPRKGAILVG-SDADIIIFNPNS--------SFEITARSHHSRLDTN 464 (535)
Q Consensus 395 ~~~~~~~~~~~~l-s~~eal~~~T~~~A~~lgl~~~~GsI~~G-k~ADlvvld~~~--------~~~i~~~~~~~~~~~~ 464 (535)
+.++..+++.+.| +++++++++|.|||++||+++++|+|++| +.|||||+|.+. ++.++.+++.+...|+
T Consensus 401 ~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~s~~~~s 480 (559)
T 2fty_A 401 PLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYT 480 (559)
T ss_dssp HHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGTSSCSCC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEEEchHHhcccCCCC
Confidence 9888777777779 99999999999999999997789999999 999999999997 8999999999999999
Q ss_pred CCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCC
Q 009410 465 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505 (535)
Q Consensus 465 p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~ 505 (535)
||+|..+.++|..||++|++||++|+++...+.|++++++.
T Consensus 481 p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~~~ 521 (559)
T 2fty_A 481 PFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKRGK 521 (559)
T ss_dssp TTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCCCCC
T ss_pred CccCCEecceEEEEEECCEEEEECCeeccCCcCCeeecCCc
Confidence 99999999999999999999999999999888899999865
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-56 Score=460.04 Aligned_cols=438 Identities=28% Similarity=0.396 Sum_probs=367.4
Q ss_pred cCcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
.|..+++|+|++|++++....++|+|+||+|++|++.... ..++||++|++|+|||||+|+|+..+ +....+.+..
T Consensus 20 ~m~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~--~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~ 95 (473)
T 3e74_A 20 HMSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGD--AKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYET 95 (473)
T ss_dssp --CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCC--EEEEEECTTCEEEECEEEEEECC-----------CHHH
T ss_pred cCcCCEEEEeeEEECCCCceeeeEEEECCEEEEEcCCCCC--CCcEEECCCCEEecCEEEEecccCCC--CCCcHHHHHH
Confidence 4678899999999998887789999999999999986542 37899999999999999999999877 6677888888
Q ss_pred HHHHHHhCCcEEEeccc-cCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeec
Q 009410 130 GQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (535)
..+.++++||||++|+. ...+. .....++...+.. ....++++++......+ .+++.++. +.|+..+|+++.+
T Consensus 96 ~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~---~~~l~~l~-~~G~~~~K~~~~~ 171 (473)
T 3e74_A 96 GTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYN---IDRLHELD-EVGVVGFKCFVAT 171 (473)
T ss_dssp HHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTTC---TTTHHHHH-HHTCSCEEEEC--
T ss_pred HHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccch---HHHHHHHH-HcCCCEEEEeccc
Confidence 89999999999999997 33332 3445555544443 34566777766554432 44566666 6799999999875
Q ss_pred C-------CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 207 K-------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 207 ~-------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
. +.+..+++.+.++++.|++.|.++.+|+++..............|......|...+|...+...+.+++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la 251 (473)
T 3e74_A 172 CGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLA 251 (473)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHH
Confidence 3 345568999999999999999999999998766655556667788888888999999999999999999999
Q ss_pred HhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC
Q 009410 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (535)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G 359 (535)
++.+.++|+.|.++.+..+.++.+++.|+.+++++++++++++.+.+... +..+++.||+|...++.++++++++|
T Consensus 252 ~~~g~~lhi~Hvst~~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~~----~~~~~~~Pplr~~~~~~~L~~~l~~G 327 (473)
T 3e74_A 252 KVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEI----GTLAKCSPPIRDLENQKGMWEKLFNG 327 (473)
T ss_dssp HHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHHH----CGGGCCSSCCCCHHHHHHHHHHHHTT
T ss_pred HHhCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhCC----CCcEEEeCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998877532 46688999999999999999999999
Q ss_pred CeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCC
Q 009410 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 436 (535)
Q Consensus 360 v~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~G 436 (535)
++++++||+.|.....+. .+|..+|+ |++..++.++..++..++++++++++++|.|||+++|++ ++|+|++|
T Consensus 328 ~~~~i~tDh~p~~~~~k~---~~f~~~~~G~~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~-~~G~l~~G 403 (473)
T 3e74_A 328 EIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQ-QKGRIAPG 403 (473)
T ss_dssp CCCEECCCBCCCCTTTTC---SCTTTSCCCBCCGGGHHHHHHHHHTTTTCCCHHHHHHHHTHHHHHHTTCT-TSSCCSTT
T ss_pred CCcEEEeCCCCCCHHHcc---cChhhcCCCcccHHhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-CCCccCCC
Confidence 999999999999888764 37888886 889999999877888889999999999999999999996 57999999
Q ss_pred CCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE-CCeecccCCCceEeecC
Q 009410 437 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE-NDELNVVPGSGKYIEMR 504 (535)
Q Consensus 437 k~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~-~~~~~~~~~~~~~~~~~ 504 (535)
+.|||||+|.+..+.++.+++.+...|+||+|..+.++|.+||++|++||+ +|+++.. +.|++++++
T Consensus 404 ~~AD~vv~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~v~G~~v~~~~g~~~~~-~~G~~~~~~ 471 (473)
T 3e74_A 404 KDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVA-PKGQFILKH 471 (473)
T ss_dssp SBCCEEEEESSCCEECCGGGCCSSSCCCTTTTCEESCEEEEEEETTEEEEETTTBCCSC-CCCCEECCC
T ss_pred CccCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEECCEEEEecCCeEccC-CCceeecCC
Confidence 999999999999999999999999999999999999999999999999999 9999986 689999864
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-55 Score=464.31 Aligned_cols=467 Identities=49% Similarity=0.858 Sum_probs=386.1
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCc----eEEecCCCEEeecccccccccccccCCCCchhhh
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~----~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~ 127 (535)
+.+++|+|++|++++...+++|+|+||+|++|++....+.+. ++||++|++|+|||||+|+|+...+.+..+++++
T Consensus 26 ~~~~lI~ng~Vv~~~~~~~~dV~I~dGrI~~Ig~~~~~~~~~~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~~~~~e~~ 105 (541)
T 2vr2_A 26 PSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDF 105 (541)
T ss_dssp -CEEEEESCEEECSSCEEECEEEEETTEEEEEEC-----------CEEEECTTSEEEECEEEEEECTTCBCSSSBCSCCT
T ss_pred cCCEEEECcEEEcCCCceEeeEEEECCEEEEeccCCCCCcccccCceEEECCCCEEccCEEEecccCCCCCCCCcCHHHH
Confidence 367999999999987767899999999999999864333233 8999999999999999999998775444566778
Q ss_pred HHHHHHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEee
Q 009410 128 FSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (535)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (535)
+...+.++++||||++|+..+.. ....+.++.+..... ....+++++........+..+++..+.++.|+..+|+++.
T Consensus 106 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~el~~l~~~~G~~~~k~~~~ 185 (541)
T 2vr2_A 106 HQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMA 185 (541)
T ss_dssp THHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSCSHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence 88888999999999999865432 245666666555432 2455666666655555666677777775579999999998
Q ss_pred cCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCC
Q 009410 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (535)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (535)
+++...++.+.++++++.|++++.++.+|+++........+.+.+.|+..+.+|...++...+...+.+++.++...+.+
T Consensus 186 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p 265 (541)
T 2vr2_A 186 YKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCP 265 (541)
T ss_dssp STTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 88777889999999999999999999999988776667778888999999888888888888888888999999999999
Q ss_pred EEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCC-cccHHHHHHHHhcCCeEEE
Q 009410 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA-SGHNKALQAALATGILQLV 364 (535)
Q Consensus 286 ~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~~~~~l~~Gv~~~l 364 (535)
+++.|+.+....+.++.+++.|+.++++++++++.++...+....|..+..++++||+|. ..+.+.+++++..|+..++
T Consensus 266 ~~~~h~ss~~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~ 345 (541)
T 2vr2_A 266 LYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTT 345 (541)
T ss_dssp EEEEEECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEE
Confidence 999999987777888888999999988888877777766554444444456678899997 4677889999999999999
Q ss_pred eCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccE
Q 009410 365 GTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 441 (535)
Q Consensus 365 gtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADl 441 (535)
|||+.++....+....+.|..+|+ |++..+..++..+++.++++++++++++|.|||++||+++++|+|++|++|||
T Consensus 346 gtD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADl 425 (541)
T 2vr2_A 346 GTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADI 425 (541)
T ss_dssp BCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCE
T ss_pred EeCCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCE
Confidence 999999888766655567887876 77888888887778888899999999999999999999878999999999999
Q ss_pred EEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCcc-cccCchhhhH
Q 009410 442 IIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY-LFHGLDKADA 518 (535)
Q Consensus 442 vvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 518 (535)
||+|.+..+.++.+.+.+...|+||+|..+.++|+.||++|++||++|+++...+.|++++++++.+ ++.++.++++
T Consensus 426 vv~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 503 (541)
T 2vr2_A 426 VIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRDR 503 (541)
T ss_dssp EEEEEEEEEECCTTTCSSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCCCSSCHHHHHHHHHHHH
T ss_pred EEEcCCcCeEeCHHHhhcccCCCccCCCEEeeeEEEEEECCEEEEECCeeccCCCCceEecCCCCcchhhhhHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998888999999998764 5666654444
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-55 Score=462.46 Aligned_cols=467 Identities=44% Similarity=0.793 Sum_probs=379.6
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~ 131 (535)
+++++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+.....+..+++++....
T Consensus 25 ~~~~li~n~~v~~~~~~~~~~V~I~~grI~~Ig~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~ 104 (501)
T 2vm8_A 25 SDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQGT 104 (501)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEEETTEEEEEESSCCCCSSSCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHH
T ss_pred cCCEEEEeeEEECCCCceEeeEEEECCEEEEeccCCCCCCCCeEEECCCCEEeeCEEEeeecccccccCCCcHHHHHHHH
Confidence 35799999999998776779999999999999986543445789999999999999999999976632334567788888
Q ss_pred HHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhcc-cccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCC
Q 009410 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (535)
+.++++||||++|+..... ......++.......+ ....++++........+..+++.++.++.|+..+|+++.+...
T Consensus 105 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~l~~~~G~~~i~~~~~~~~~ 184 (501)
T 2vm8_A 105 KAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDR 184 (501)
T ss_dssp HHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESSSTTT
T ss_pred HHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCCCcccHHHHHHHHHhCCceEEEEeeccCCC
Confidence 8999999999999865433 2345555555444432 3445555554444444455667777655799999998877655
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
...+.+.++++++.|+++++++.+|++...........+.+.|...+.+|...+|...+...+.+.+.++...+.++|+.
T Consensus 185 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~ 264 (501)
T 2vm8_A 185 FQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYIT 264 (501)
T ss_dssp TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 67789999999999999999999999987666677777888999998999988998888888999999999999999999
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCc-ccHHHHHHHHhcCCeEEEeCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
|+......+.++.+++.|+.+++.++++++.++...+....+..+..++..||.|.. ....++++++++|+.+++|||+
T Consensus 265 h~~~~~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~ 344 (501)
T 2vm8_A 265 KVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAH 344 (501)
T ss_dssp EECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCB
T ss_pred eCCcHHHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecC
Confidence 999988778888889999988777777777776655433222222345677888875 5678899999999999999999
Q ss_pred CCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEc
Q 009410 369 CAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld 445 (535)
.+++...++...++|...|. |.++.+..+++.+++.+++|++++++++|.|||+++|+++++|+|++||.|||||+|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d 424 (501)
T 2vm8_A 345 CTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWD 424 (501)
T ss_dssp CCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEE
T ss_pred CCCChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEc
Confidence 88876665544456665554 677777777766777778999999999999999999998789999999999999999
Q ss_pred CCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc-ccccCchhhhH
Q 009410 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN-YLFHGLDKADA 518 (535)
Q Consensus 446 ~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 518 (535)
.++++.++..++.+...|+||++....++|..||++|++||++|+++...+.|++++++.+. +++.++++++.
T Consensus 425 ~~~~~~~~~~~~~s~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~ 498 (501)
T 2vm8_A 425 PDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARSR 498 (501)
T ss_dssp EEEEEECCTTTSSSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCSSCHHHHHHHHHHHH
T ss_pred CCCCeeeccccccccccCCCccCcEeCceEEEEEECCEEEEECCeEccCCCCCceecCCCCCchHHHHHHHHhh
Confidence 99999999999999999999999998899999999999999999999777789999999977 69888887763
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=443.00 Aligned_cols=449 Identities=39% Similarity=0.667 Sum_probs=361.2
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
+++|+|++|++++...+++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+.........+++++...+.
T Consensus 2 ~~li~n~~v~~~~~~~~~~v~I~~g~I~~ig~~~~--~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 79 (457)
T 1nfg_A 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFATATVA 79 (457)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECEEEEEECCSCEETTEECSCCHHHHHHH
T ss_pred cEEEEeeEEEeCCCceeeeEEEECCEEEEecCCCC--CCCeEEeCCCCEEccceEeeccccccCcCCCCChhhHHHHHHH
Confidence 58999999999877678899999999999997542 3578999999999999999999997432122256677778888
Q ss_pred HHhCCcEEEeccccCCC-CChHHHHHHHHHHhc-ccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCc
Q 009410 134 ALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (535)
++++||||++|+..... ....+.++....... ....+++++......+.+..++++++. +.|+..+|+++++.....
T Consensus 80 ~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~k~~~~~~~~~~ 158 (457)
T 1nfg_A 80 AACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNM 158 (457)
T ss_dssp HHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHTTTGG-GGTCCEEEEESSSTTTTB
T ss_pred HHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCCchhHHHHHHHHH-HcCCCEEEEeeccCCCCC
Confidence 99999999999865322 245666666555443 244556666655555544445555554 679999999887654344
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+.+.+.++++.+++.+.++.+|++.........+.+...|......|....|..++.+.+.++++++++.+.++++.|+
T Consensus 159 ~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~H~ 238 (457)
T 1nfg_A 159 IDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238 (457)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeC
Confidence 57888999999999999999999998877767777777888877677777788888889999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
.+....+.+..+++.|+.++++.++|+++++++.+....+ .+..++..|+.|......++++++++|+++++|||+.++
T Consensus 239 ~~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~-~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~ 317 (457)
T 1nfg_A 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSW 317 (457)
T ss_dssp CSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT-GGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccc-cCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 8877667787777889889888889998888777654322 245667788888888889999999999999999998776
Q ss_pred Chh-hhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCC
Q 009410 372 NST-QKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 447 (535)
Q Consensus 372 ~~~-~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~ 447 (535)
+.. .+..+.++|...|. |.++.+...+ .+++.+++|++++++++|.|||++||+++++|+|++||+|||||+|.+
T Consensus 318 ~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~-~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 396 (457)
T 1nfg_A 318 LFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPE 396 (457)
T ss_dssp CTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCSTTSBCCEEEEEEE
T ss_pred ChHHhhhcccCCHhHCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhhhHHHHhCCCCCCcCcCCCCccCEEEEeCC
Confidence 543 22211135555554 5677777766 566677799999999999999999999778999999999999999999
Q ss_pred CceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc
Q 009410 448 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507 (535)
Q Consensus 448 ~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
+++.++.+++.+...|+||+|....++|+.||++|++||++|+++...+.|++++++.|+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~ 456 (457)
T 1nfg_A 397 AEMVIEQTAMHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKYK 456 (457)
T ss_dssp EEEECCGGGSCSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCCCSCC
T ss_pred CCEEecHHHccCCCCCCCccCCEecceEEEEEECCEEEEECCccccCCCCCeeeCCCCCC
Confidence 999999999999999999999999999999999999999999999987779999887553
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=439.60 Aligned_cols=426 Identities=27% Similarity=0.399 Sum_probs=363.2
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeC--CCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~--~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
.++++|+|++|+++++..+++|+|+||+|++|++ ... +.+.++||++|++|+|||||+|+|+... +....+.+..
T Consensus 5 ~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~ 81 (448)
T 3hm7_A 5 RFDLIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSIS-SDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEGFAS 81 (448)
T ss_dssp CCSEEEEEEEEECSSCEEEEEEEEETTEEEEEESTTCSC-TTSSCEEECTTCEEEECEEEEEECCCTT--TSGGGCCSHH
T ss_pred cccEEEEeeEEECCCCceEeEEEEECCEEEEeeCccCCC-CCCCeEEECCCCEEecCEEEeeeccCCC--CCCcHhHHHH
Confidence 5689999999999887788999999999999998 433 3468899999999999999999999877 5556677888
Q ss_pred HHHHHHhCCcEEEeccc-cCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeec
Q 009410 130 GQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (535)
..+.++++|||+++++. ..... .....++...... .....++.++.+..... .+++.++. +.|+.++|+++++
T Consensus 82 ~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~-~~g~~~~~~~l~~ 157 (448)
T 3hm7_A 82 GSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---IDHLQDLH-DGGVIGFKAFMSE 157 (448)
T ss_dssp HHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---GGGHHHHH-HTTCSEEEEESSS
T ss_pred HHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---HHHHHHHH-HcCCCEEEEeecc
Confidence 88999999999999986 43322 3344444433333 22455666665554333 44566666 5799999999887
Q ss_pred CCC---CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcC
Q 009410 207 KGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (535)
Q Consensus 207 ~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (535)
... ...+.+.+.++++.|+++|+++.+|+++........+.+...|......|...+|...+..++.+++.+++..+
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~g 237 (448)
T 3hm7_A 158 CGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTC 237 (448)
T ss_dssp CSSSSSCCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccCcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHhC
Confidence 543 45589999999999999999999999988777766677788899988888899999999999999999999999
Q ss_pred CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEE
Q 009410 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQL 363 (535)
Q Consensus 284 ~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~ 363 (535)
.++++.|.+....++.++.+++.|+.++++.++++++++.+.+.. .+..+++.||+|...++.+++++++.|+.++
T Consensus 238 ~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~ 313 (448)
T 3hm7_A 238 CPIHICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE----IGYLAKCAPPLRERQEVEDLWDGLMAGEIDL 313 (448)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHH----HCSTTCCSSCCCCHHHHHHHHHHHHHTCCCE
T ss_pred CCEEEEeCCCHHHHHHHHHHHhcCCCEEEEechHHHccCHHHhcC----CCCeEEEcCCCCCHHHHHHHHHHHhcCCccE
Confidence 999999999999999999999999999999999999998877643 2467889999999999999999999999999
Q ss_pred EeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCcc
Q 009410 364 VGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDAD 440 (535)
Q Consensus 364 lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~AD 440 (535)
++||+.|++...+..+ +|...|+ |++..+..+++.++...+++++++++++|.|||+++|+++++|+|++|+.||
T Consensus 314 i~tD~~p~~~~~k~~~--~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad 391 (448)
T 3hm7_A 314 ISSDHSPSLPQMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEAS 391 (448)
T ss_dssp ECCCBCCCCGGGGCCS--STTTSCCCBCCTTTHHHHHHHHTTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCSTTSBCC
T ss_pred EEeCCCCCCHHHcccC--CHhhCCCCCccHHHHHHHHHHHHHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccCCCcCC
Confidence 9999999988876532 4777775 7788898888777778889999999999999999999988899999999999
Q ss_pred EEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCe
Q 009410 441 IIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 490 (535)
Q Consensus 441 lvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~ 490 (535)
|||+|.+.++.++.+++.+...|+||+|..+.++|.+||++|++||++++
T Consensus 392 ~~~~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~~~~~ 441 (448)
T 3hm7_A 392 FTLIDLNESYTLNASDLYYRHPISPYVGQRFRGKVKHTICQGKHVYQDHE 441 (448)
T ss_dssp EEEEEEEEEEECCGGGCCSSSCCCTTTTCEEEEEEEEEEETTEEEEECC-
T ss_pred EEEEeCCCCEEEChHhcccccCCCCCCCCEEEEEEEEEEECCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999875
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=437.02 Aligned_cols=445 Identities=27% Similarity=0.373 Sum_probs=349.0
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCC-CCchhhhHHHH
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g-~~~~~~~~~~~ 131 (535)
.+++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+... + ..+++++....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~~~~ 79 (458)
T 1gkr_A 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHIIDM--DLKNRYGRFELDS 79 (458)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEECEEEEEEECCCG--GGTTTSCCHHHHH
T ss_pred ceEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCEEEeeecccCC--CCCCchhHHHHHH
Confidence 46899999999987667899999999999999864333456899999999999999999999865 3 33556677778
Q ss_pred HHHHhCCcEEEeccc-cCCC-CChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeecCC-
Q 009410 132 AAALAGGTTMHIDFV-IPIN-GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG- 208 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~- 208 (535)
+.++++||||++|+. .... ....+.++...+.......+++++.+... +..+++.++. +.|+..+|++++++.
T Consensus 80 ~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~g~~~i~~~~~~~~~ 155 (458)
T 1gkr_A 80 ESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVP---GNLPEIRKMH-DAGAVGFKSMMAASVP 155 (458)
T ss_dssp HHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCT---TCHHHHHHHH-HTTCCEEEEESSCSBT
T ss_pred HHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCceeEEEEeccCC---CCHHHHHHHH-HcCCcEEEEeecccCC
Confidence 888999999999986 3222 12344444443333221144444433221 2345666766 568999999887653
Q ss_pred --CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCE
Q 009410 209 --SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (535)
Q Consensus 209 --~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (535)
....+.+.++++++.|+++++++.+|++...........+...|......|....+...+.+.+.+++.++...+.++
T Consensus 156 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G~~~~~~h~~~~~~~~~~~~~~~~~~la~~~g~~~ 235 (458)
T 1gkr_A 156 GMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRL 235 (458)
T ss_dssp TTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcCccchhhccccCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 356789999999999999999999999877665555566667787666677777787788888899999999999999
Q ss_pred EEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
|+.|++.....+.+..+++.|++++++.++++++++++.+.. .+..++..||.|......++++++++|+++++||
T Consensus 236 h~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lgt 311 (458)
T 1gkr_A 236 IVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER----IGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGS 311 (458)
T ss_dssp EECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH----HGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECC
T ss_pred EEEeCCCHHHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhc----cCceEEEcCCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 999999876667777777789888888888888777665532 2345567889998888999999999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEE
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvv 443 (535)
|+.+++...+..+..+++..+. |.+..+...++.+++.+++|++++++++|.|||+++|+++++|+|++||+|||||
T Consensus 312 D~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv 391 (458)
T 1gkr_A 312 DHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLI 391 (458)
T ss_dssp CEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEE
T ss_pred CCCCCChHHhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCCcCCEEE
Confidence 9877765533211124444443 6666777777667777789999999999999999999977899999999999999
Q ss_pred EcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc
Q 009410 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507 (535)
Q Consensus 444 ld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
+|.++++.++.+++.+...|+||+|..+.++|..||++|++||++|+++...+.|++++++.+.
T Consensus 392 ~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~ 455 (458)
T 1gkr_A 392 LDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTRRNYE 455 (458)
T ss_dssp EESCCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC----
T ss_pred EcCCcceEEcHHHccccCCCCCcCCCEeeeEEEEEEECCEEEEECCccccCCCCCeecCCcccc
Confidence 9999999999999999999999999998999999999999999999999987779999876653
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=428.87 Aligned_cols=417 Identities=25% Similarity=0.371 Sum_probs=337.4
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHH
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~ 134 (535)
++|+|++|++.....+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+... +....+.+....+.+
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~~~~~~ 79 (424)
T 3gri_A 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLREP--GGEYKETIETGTKAA 79 (424)
T ss_dssp EEEESCEEEETTEEEECEEEEETTEEEEEESCCCCCSSCEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHHH
T ss_pred EEEEeeEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEEeCeEEeeecCCCC--CCCCHHHHHHHHHHH
Confidence 789999999943347899999999999999876545578999999999999999999999876 667788888889999
Q ss_pred HhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc-cccccceeeeeecC-ChhhHHHHHHHHHHcCCCEEEEEeecCCCCc
Q 009410 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (535)
Q Consensus 135 l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (535)
+++|||+++++....+. .....++...+.... ...++..+...... ..+...++.++. ..|...+ .+.+.+.
T Consensus 80 ~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~~G~~~~----~~~~~~~ 154 (424)
T 3gri_A 80 ARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALV-KEGAFAF----TDDGVGV 154 (424)
T ss_dssp HHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCSSSBCCHHHHH-TTTCCCE----EECSSCC
T ss_pred HhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCcchHHHHHHHH-hcCcEEE----ecCCcCc
Confidence 99999999998654332 334444444333322 33344444333321 222334455555 5666655 3345567
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc
Q 009410 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (535)
Q Consensus 212 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 291 (535)
.+.+.++++++.|+++|+++.+|+++........ ...|......+...+|...+...+.+.+.++++.+.++++.|+
T Consensus 155 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~---~~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~g~~~~i~H~ 231 (424)
T 3gri_A 155 QTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGA---MHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHV 231 (424)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTCC---EESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhhh---hhcCccchhhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 7899999999999999999999998765321000 0001111122334578888889999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCC
Q 009410 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (535)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~ 371 (535)
++....+.++.+++.|+.++++.++++++++.+.+.. .+..+++.||+|...++.++++++++|..++++|||.|+
T Consensus 232 s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~ 307 (424)
T 3gri_A 232 STKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPG----NNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPH 307 (424)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCS----SCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhC----cCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 9999999999999999999999999999999887753 246788999999999999999999999999999999999
Q ss_pred ChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCC
Q 009410 372 NSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~ 448 (535)
+...+. .+|...|+ |++..++.++..++..+++|++++++++|.|||+++|+ ++|+|++|+.|||||+|.+.
T Consensus 308 ~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~--~~g~l~~G~~Ad~~~~d~~~ 382 (424)
T 3gri_A 308 ARDEKA---QPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGYADLTIIDLDS 382 (424)
T ss_dssp CHHHHT---SCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHHHHHHHTHHHHHHTTC--SCSCCCTTSBCCEEEEESSC
T ss_pred CHHHcc---CCHhHCCCCCccccccHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCC--CCCcccCCCcCCEEEEcCCC
Confidence 988775 37888876 88889999888888888899999999999999999999 58999999999999999999
Q ss_pred ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCe
Q 009410 449 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 490 (535)
Q Consensus 449 ~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~ 490 (535)
++.++++++.++..|+||+|..+.++|.+||++|++||++|+
T Consensus 383 ~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~~~g~ 424 (424)
T 3gri_A 383 EQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGDK 424 (424)
T ss_dssp CEECCGGGCSSSCCCCTTTTCEESCEEEEEEETTEEEEEC--
T ss_pred CEEEchhhcccccCCCCcCCCEEeeeEEEEEECCEEEEeCCC
Confidence 999999999999999999999999999999999999999985
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=421.10 Aligned_cols=419 Identities=25% Similarity=0.380 Sum_probs=335.4
Q ss_pred cEEEEccEEEcCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHH
Q 009410 54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (535)
Q Consensus 54 ~~vi~n~~vi~~~~-~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~ 132 (535)
+++|+|++|++... ..+++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +....+.+....+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~ 78 (428)
T 3mpg_A 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHVHLREP--GGEHKETIETGTL 78 (428)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEESSBEEECCSSCC-CTTSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHH
T ss_pred cEEEEeeEEEeCCCCeeeeeEEEECCEEEEecCCCC-CCCCeEEECCCCEEeeCEEEEeeccCCC--CCCchhHHHHHHH
Confidence 68999999997544 468999999999999998654 3468999999999999999999999876 6667788888899
Q ss_pred HHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc-cccccceeeeeecC-ChhhHHHHHHHHHHcCCCEEEEEeecCCC
Q 009410 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (535)
Q Consensus 133 ~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (535)
.++++||||++++....+. .....++...+.... ....+..+...... ..+...++.++. ..|...+ .+.+.
T Consensus 79 ~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~G~~~~----~~~~~ 153 (428)
T 3mpg_A 79 AAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLK-ELGAFAF----TDDGV 153 (428)
T ss_dssp HHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCSSSBCCHHHHH-HTTCCCE----ECTTS
T ss_pred HHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCcchHHHHHHHH-HhCCEEE----ECCCc
Confidence 9999999999998654332 233344433333221 22333333222221 122333455555 5577665 34455
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
+..+.+.++++++.|+++|+++.+|+++........ ...|......+...+|...+...+.+.+.+++..+.++++.
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~---~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~g~~~~i~ 230 (428)
T 3mpg_A 154 GVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGC---VHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVC 230 (428)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTCS---EETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhHH---hhcCccchhhCcCCCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 667899999999999999999999998764321000 00011111223345788888889999999999999999999
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
|+++....+.++.+++.|+.++++.++++++++.+.+.. .+..++++||.|...++.++++++.+|+..+++||+.
T Consensus 231 H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~ 306 (428)
T 3mpg_A 231 HVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPS----ADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHA 306 (428)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCS----SCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBC
T ss_pred eCCCHHHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhC----CCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCC
Confidence 999998889999999999999999999999999887753 3477889999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcC
Q 009410 370 AFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 446 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~ 446 (535)
|++...+.. +|...|+ |++..++.+++.++..+++|++++++++|.|||++||++ .|+|++|+.|||||+|.
T Consensus 307 p~~~~~k~~---~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~--~g~i~~G~~Ad~~~~d~ 381 (428)
T 3mpg_A 307 PHTAEEKAQ---GIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLE--AGRLKEGRTADITIIDL 381 (428)
T ss_dssp CCCTTGGGS---CTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHHHHHTTTHHHHHHHTCS--CSCCCTTSBCCEEEEES
T ss_pred CCCHHHccc---CHhhCCCCceehhhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC--CccccCCCcCCEEEEcC
Confidence 998877654 5777776 888899998877777888999999999999999999994 89999999999999999
Q ss_pred CCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 447 NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 447 ~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
+.++.++.+++.++..|+||+|..+.++|.+||++|++||++|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~~~g~~~ 427 (428)
T 3mpg_A 382 EQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKESAL 427 (428)
T ss_dssp SCCEECCGGGCSSSCCCCSCTTCEECCEEEEEEETTEEEEECSCC-
T ss_pred CCCEEEchhhccccCCCCCcCCCEEeeEEEEEEECCEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999875
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-49 Score=406.16 Aligned_cols=431 Identities=20% Similarity=0.287 Sum_probs=330.2
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeC-CCCC---CCCceEEecCCCEEeecccccccccccccCCCCchhhhH
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP-NINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~-~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~ 128 (535)
++++|+|++|++++...+++|+|+||+|++|++ .... +.+.++||++|++|+|||||+|+|+... +..+.+.+.
T Consensus 4 m~~li~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~e~~~ 81 (452)
T 2gwn_A 4 MKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREP--GLTHKATIA 81 (452)
T ss_dssp SEEEEEEEEEEETTEEEEEEEEEETTEEEEEEESCCCTTCCTTCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHH
T ss_pred ccEEEECeEEECCCceeeeeEEEECCEEEEEecCCCccccCCCCCeEEeCCCCEEecCEEeeccccCCC--CCCcHHHHH
Confidence 468999999999876678899999999999997 5432 2356899999999999999999999866 555677788
Q ss_pred HHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhhHHHHHHHHHHcCCCEEEEEeec
Q 009410 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (535)
...+.++++||||++|+....+. .....++...+.. ....++++++....... .+++.++. ..|..++|.++.+
T Consensus 82 ~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~-~~g~~g~k~~~~~ 157 (452)
T 2gwn_A 82 SESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDN---IDEIKRVD-KHLVPGLKLFLGS 157 (452)
T ss_dssp HHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSSC---HHHHHTCC-TTSCSCEEEESSS
T ss_pred HHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCCC---HHHHHHHH-HcCCCEEEEEecc
Confidence 88889999999999999643332 2344444433333 23556666665544332 23444443 4578889998765
Q ss_pred CC--CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH-HHcCC-CCcccccccCChhhHHHHHHHHHHHHHhc
Q 009410 207 KG--SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM-IELGI-TGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (535)
Q Consensus 207 ~~--~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (535)
.. .+..+.+.+++.++.+ +.++..|++...........+ ...|. ..+..|...+|...+.+.+.++++++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~~~~~~~~~~~~~~~~G~~~~~~~h~~~~~~~~~~~~l~~~~~la~~~ 234 (452)
T 2gwn_A 158 STGNMLVDNKETLEKIFGEC---DLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERM 234 (452)
T ss_dssp CCGGGBCCCHHHHHHHHHHC---CSCEEEECCCHHHHHHHHHHHHHHHCSCCCGGGHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHc---CCEEEEcCCCHHHHHhHHhhhhhhcCcccchhhccccCChHHHHHHHHHHHHHHHHh
Confidence 31 1233567777666544 778899998776555544433 44554 44555656678888889999999999999
Q ss_pred CCCEEEEEccCHHHHHHHHH---HHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC
Q 009410 283 NTPLYVVHVMSMDAMEEIAK---ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (535)
Q Consensus 283 ~~~~~~~H~~~~~~~~~~~~---~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G 359 (535)
+.++++.|+++....+.+.. +++. +++++.++|+++++++.+.. .+..++..|+.+......++++++++|
T Consensus 235 g~~v~i~H~~~~~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~~~~~~~----~g~~~~~~P~lr~~~~~~~l~~~l~~G 308 (452)
T 2gwn_A 235 NARLHILHLSTEKELSLFRNDIPTAQK--RITSEVCVHHLWFSDTDYGR----LGNRIKWNPAIKKESDREALRAAVRNG 308 (452)
T ss_dssp TCCEEECCCCCTGGGGGSCCSSCGGGC--SEEEEEEHHHHHCCGGGHHH----HGGGGCCSSCCCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCHHHHHHHHHhhcccCC--CeEEEEchHHhhcCHHHHhc----cCceEEECCCCCCHHHHHHHHHHHHCC
Confidence 99999999986554444433 1222 57777888888888776643 345667788888888889999999999
Q ss_pred CeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCC
Q 009410 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 436 (535)
Q Consensus 360 v~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~G 436 (535)
+++++|||+.+++...+. .+|+.+|+ |+++.+...+. .+...++|++++++++|.|||+++|++ ++|+|++|
T Consensus 309 v~~~lgTD~~~~~~~~k~---~~~~~~~~g~~~~e~~~~~~~~-~~~~~~ls~~~~l~~~T~~~A~~lgl~-~~G~l~~G 383 (452)
T 2gwn_A 309 RIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALLE-LCNQGIFSIEEIVSKTAHIPATLFAIE-KRGYIRPG 383 (452)
T ss_dssp SSCEEECCBCCCCHHHHC---SCTTTSCCCCCCTTTHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHHHTBT-TCSSCCTT
T ss_pred CceEEEeCCCCCChHHhc---CChhhCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHHcCCC-CCCcccCC
Confidence 999999999887665332 25666665 55777777664 455678999999999999999999996 79999999
Q ss_pred CCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 437 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 437 k~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
|.|||||+|.++++.++.+++.+...|+||+|..+.++|..||++|++||++|+++..++.|+++++
T Consensus 384 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 450 (452)
T 2gwn_A 384 YYADLVLVDPSSPHTVSADNILSLCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLFF 450 (452)
T ss_dssp SBCCEEEEETTSCEECCTTTCCSTTCCCTTTTCEESCEEEEEEETTEEEEETTEECSSCCCCCBCCB
T ss_pred CcCCEEEEcCCCCeEECHHHccccCCCCCCCCcEEeeeEEEEEECCEEEEECCeeccCCCCceeeCC
Confidence 9999999999999999999999999999999999999999999999999999999988778999874
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=386.24 Aligned_cols=408 Identities=24% Similarity=0.347 Sum_probs=305.3
Q ss_pred EEEEccEEEcCCC-ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHH
Q 009410 55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (535)
Q Consensus 55 ~vi~n~~vi~~~~-~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~ 133 (535)
++|+|++|+++.+ ..+++|+|+||+|++|++. .+.++||++|++|+|||||+|+|+... +..+.+++....+.
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~ 75 (426)
T 2z00_A 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEGG----EAKQVVDGTGCFLAPGFLDLHAHLREP--GEEVKEDLFSGLLA 75 (426)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTEEEESBCC----CCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHH
T ss_pred EEEEeeEEECCCCceecceEEEECCEEEEEecC----CCceEEeCCCCEEecCEEEeccccCCC--CCCchHHHHHHHHH
Confidence 6899999999775 3688999999999999975 246899999999999999999999875 44456677778889
Q ss_pred HHhCCcEEEeccccCCCC-ChHHHHHHHHHHhccc-ccccceeeeeec-CChhhHHHHHHHHHHcCCCEEEEEeecCCCC
Q 009410 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-CMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210 (535)
Q Consensus 134 ~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~ 210 (535)
++++||||++++...... .....++...+..... ..++........ ...+..+++.++. +.|...++. ++..
T Consensus 76 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~i~~----~~~~ 150 (426)
T 2z00_A 76 AVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTPAGLLR-EAGAVLLTD----DGRT 150 (426)
T ss_dssp HHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSSSBCCHHHHH-HHTCCEEEC----TTSC
T ss_pred HHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChhhHHHHHHHH-HcCCEEEEC----CCcC
Confidence 999999999998643221 2223333333322221 122222221111 1112233455555 357766642 3445
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHH----HHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHh-----
Q 009410 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF----- 281 (535)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 281 (535)
..+.+.++++++.|+++|+++.+|+.+........ ......|. ..+|...+...+.++++++..
T Consensus 151 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~g~~~~~~g~-------~~~~~~~e~~~~~~~~~~a~~~~~~~ 223 (426)
T 2z00_A 151 NEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDGPLADLLGL-------PGNPPEAEAARIARDLEVLRYALRRS 223 (426)
T ss_dssp CCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCSEECSHHHHHHTC-------CEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhhccCccchhccc-------ccCChHHHHHHHHHHHHHHhhccccc
Confidence 67899999999999999999999998765322000 00111122 224555666677788888887
Q ss_pred -cCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC
Q 009410 282 -VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360 (535)
Q Consensus 282 -~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv 360 (535)
.+.++++.|++..+..+.++.+++.|+.|+++.+|++++++.+.+.. .+..++..||.|...++..+++++++|+
T Consensus 224 ~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~~plr~~~~~~~l~~~l~~G~ 299 (426)
T 2z00_A 224 PATPRLHVQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEALRT----FDPLFKVAPPLRGEEDREALLEGLLDGT 299 (426)
T ss_dssp SSCCCEEETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGG----CCGGGCCSSCCCCHHHHHHHHHHHHHTS
T ss_pred cCCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhc----cCceEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 78999999999887778899999999999998888887776654431 2344567889998888889999999999
Q ss_pred eEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCC
Q 009410 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 437 (535)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk 437 (535)
++++|||+.|+....+. ++|...|. +.+..+...+..+++.+++|++++++++|.|||++||++ +|+|++||
T Consensus 300 ~~~lgsD~~p~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~T~n~A~~lgl~--~G~l~~G~ 374 (426)
T 2z00_A 300 LDAIATDHAPHTLAEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGLP--PLHLEEGA 374 (426)
T ss_dssp SCEECCCBCCCCTTGGG---SCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHHHHHHHTCC--CCCSSTTS
T ss_pred cEEEecCCCCCCHHHcc---CChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC--cccccCCC
Confidence 99999998787665432 36766665 556666666655566667999999999999999999994 89999999
Q ss_pred CccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCe
Q 009410 438 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 490 (535)
Q Consensus 438 ~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~ 490 (535)
.|||||+|. .++.++++++.++..|+||+|..+.++|.+||++|++||++++
T Consensus 375 ~ADlvv~d~-~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t~v~G~~v~~~~~ 426 (426)
T 2z00_A 375 EASLVLLSP-KERPVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRIVHEALK 426 (426)
T ss_dssp BCCEEEEEC-CCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEEECCC
T ss_pred CCCEEEEeC-CcEEEcHHHccccCCCCCcCCCEEEEEEEEEEECCEEEEecCC
Confidence 999999998 7888999999999999999999999999999999999999875
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-46 Score=386.43 Aligned_cols=414 Identities=24% Similarity=0.319 Sum_probs=278.4
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
+++++|+|++|++++. ..+++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+... +....+.+..
T Consensus 46 mm~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~ 122 (467)
T 1xrt_A 46 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDIHVHLRDP--GQTYKEDIES 122 (467)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCC-CSSEEEEECTTSEEEECEEEEEECCCTT--TCTTTCCHHH
T ss_pred eeeEEEEeeEEECCCCCceecceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEccCEEEEeecccCC--CCCchhhHHH
Confidence 3568999999998764 368899999999999997543 3457899999999999999999999765 4445667777
Q ss_pred HHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc-cccccceeeeeec-CChhhHHHHHHHHHHcCCCEEEEEeec
Q 009410 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAY 206 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (535)
..+.++++||||++|+...... .....++...+.... ...++........ ...+..+++.++. ..|+..++ .
T Consensus 123 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~-~~g~~~i~----~ 197 (467)
T 1xrt_A 123 GSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSLK-EAGCVAFT----D 197 (467)
T ss_dssp HHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSSSBCCHHHHH-HHTCCCBC----C
T ss_pred HHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcccHHHHHHHH-HcCCEEEE----c
Confidence 8888999999999998653221 222333333322221 1122222211111 1111223444444 34655543 2
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCE
Q 009410 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (535)
Q Consensus 207 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (535)
.+....+.+.++++++.|+++|+++.+|+++.......+ +.|......+....+...+...+.+.+.++...+.++
T Consensus 198 ~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~~~ 273 (467)
T 1xrt_A 198 DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI----NEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHV 273 (467)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC------------------------CHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHH----hcCccchhcccccCChHHHHHHHHHHHHHHHHhCCCE
Confidence 344567899999999999999999999997654322111 1121111112222444455566667777778889999
Q ss_pred EEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
++.|++..+..+.++.+++.|+.++++.+|++++++.+.+.. .+..++..||.|......++++++++|+++++||
T Consensus 274 hi~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgT 349 (467)
T 1xrt_A 274 HIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLN----SGANARVNPPLRKKEDRLALIEGVKRGIIDCFAT 349 (467)
T ss_dssp EESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC--------------------------CCHHHHHHHHHHTCSCEECC
T ss_pred EEEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhc----cCceEEEcCCCCCHHHHHHHHHHHhCCceEEEee
Confidence 999999887668888888999888888888777666554321 1244567788888888899999999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEE
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvv 443 (535)
|+.+.+...+. .|...|. |+++.+...++ +++.+.+|++++|+++|.|||++||++ +|+|++||.|||||
T Consensus 350 D~~~~~~~~~~----~~~~~~~g~~g~e~~l~~~l~-~~~~g~ls~~~al~~aT~n~A~~lgl~--~G~I~~G~~ADlvv 422 (467)
T 1xrt_A 350 DHAPHQTFEKE----LVEFAMPGIIGLQTALPSALE-LYRKGIISLKKLIEMFTINPARIIGVD--LGTLKLGSPADITI 422 (467)
T ss_dssp CBCCCCC---------------CCCCGGGHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHHHTCS--CSCCCTTSBCCEEE
T ss_pred CCCCCChhHhc----ccccCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHhccCHHHHhCCC--cccccCCCCCCEEE
Confidence 98876554321 3544443 55666666665 555555999999999999999999994 89999999999999
Q ss_pred EcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 444 ld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+|.++++.++++++.+...++||++..+.++|..||++|++||+|
T Consensus 423 ld~~~~~~i~~~~~~~~~~~~p~~g~~~~~~V~~viv~G~~v~~~ 467 (467)
T 1xrt_A 423 FDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467 (467)
T ss_dssp EEEEEEEECSTTTCCSSCCCCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred EeCCCCEEEChHHccCcCCCCCccCCEEeEEEEEEEECCEEEecC
Confidence 999998999988899888999999998889999999999999985
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=344.04 Aligned_cols=380 Identities=19% Similarity=0.191 Sum_probs=254.4
Q ss_pred cCcccEEEEccEEEcCCC----------ceeeeEEEeCCEEEEeeCCCC-CCCCceEEecCCCEEeeccccccccccccc
Q 009410 50 QSSSKILIKGGTVVNAHH----------QQIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~----------~~~~~I~I~~G~I~~Vg~~~~-~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 118 (535)
.++++++|+|++|+++++ .++++|+|+||+|++|++... .+.+.++||++|++|+|||||+|+|+....
T Consensus 20 ~~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~ 99 (468)
T 3lnp_A 20 KAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAMSL 99 (468)
T ss_dssp -CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTTCCCCEEEEEECCSEEEEECEEECSCCGGGGG
T ss_pred CccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCccccCCCCeEEeCCCcEEEeCeechhhChhhhh
Confidence 346789999999998653 258999999999999998654 345689999999999999999999996542
Q ss_pred C-CC---------------------CchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccc
Q 009410 119 M-GS---------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172 (535)
Q Consensus 119 ~-g~---------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (535)
. |. .+++++. .....++++||||+.|+... .....+...+.+.+..+..+
T Consensus 100 ~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~ 175 (468)
T 3lnp_A 100 FRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFY----PQQSGEAALAAGIRAVCFAP 175 (468)
T ss_dssp GTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECCSC----HHHHHHHHHHHTCEEEEEEE
T ss_pred hccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEecc
Confidence 1 11 2223322 23445689999999998432 23344444444444333332
Q ss_pred eeeeee---cCChhhHHHHHHHHHH-cCCC-----EEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHH
Q 009410 173 FHMAIT---KWDEVVSDEMEVMVKE-KGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVF 242 (535)
Q Consensus 173 ~~~~~~---~~~~~~~~~~~~~~~~-~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~ 242 (535)
...... ....+..+...++.+. .+.. .+++...+++....+++.++++++.|+++|+++++|+.+. ....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~ 255 (468)
T 3lnp_A 176 VLDFPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVS 255 (468)
T ss_dssp ECSSCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHH
T ss_pred ccCCCcccccCHHHHHHHHHHHHHHhhcCCcccCceEEEEEEcCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHH
Confidence 221111 1112333444444322 2443 6777777777788899999999999999999999999654 3333
Q ss_pred HHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeC
Q 009410 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (535)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 322 (535)
..++ ..|... +. .+......+.++.+.|+...+. +.++.+++.|+.++.||...
T Consensus 256 ~~~~---~~g~~~----------------i~-~~~~~g~l~~~~~~~H~~~~~~-~~~~~l~~~g~~v~~~p~s~----- 309 (468)
T 3lnp_A 256 ESLE---TFNKRP----------------TQ-RLADIGFLNERVSCVHMTQVDD-GDIKILQKTGASIIHCPESN----- 309 (468)
T ss_dssp HHHH---HHSSCH----------------HH-HHHHTTCCSTTEEEEECCSCCH-HHHHHHHHHCCEEEECHHHH-----
T ss_pred HHHH---HhCCCH----------------HH-HHHHcCCCCCCeEEEeccCCCH-HHHHHHHhcCCEEEEChhhh-----
Confidence 2222 223211 11 1122233456788999998876 88999999999998887642
Q ss_pred cccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH
Q 009410 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV 402 (535)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 402 (535)
+..+... .+++.++++|+++++|||+.+.+...+ +|. +..+...+.+..
T Consensus 310 --------~~~~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~-----~~~------~~~~~~~~~~~~ 358 (468)
T 3lnp_A 310 --------LKLASGF------------CPIAKLSAANIPLAIGTDGAASNNDLD-----MFS------ETKTAALLAKGV 358 (468)
T ss_dssp --------HHTTCCC------------CCHHHHHHTTCCEEECCCCTTSSCCCC-----HHH------HHHHHHHHHHHH
T ss_pred --------hhcCCCC------------CCHHHHHHCCCeEEEECCCCcCCCCCC-----HHH------HHHHHHHHhhhc
Confidence 1111111 128889999999999999765422211 111 223333333332
Q ss_pred h--cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEE
Q 009410 403 E--SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 480 (535)
Q Consensus 403 ~--~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~ 480 (535)
. ..++|++++|+++|.|||+++|+++++|+|++||.|||||+|.++++..+..+..+.. .+.. ...+|..||+
T Consensus 359 ~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~---~~~~--~~~~v~~v~v 433 (468)
T 3lnp_A 359 SQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPVFDPVSHM---VYCT--KSTQVSHVWV 433 (468)
T ss_dssp HTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHHHH---HHSC--CGGGEEEEEE
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCccCCccCHHHHh---hccC--CCCCceEEEE
Confidence 2 5679999999999999999999988899999999999999999877655432221111 1111 1358999999
Q ss_pred CCEEEEECCeecccC
Q 009410 481 GGRVVWENDELNVVP 495 (535)
Q Consensus 481 ~Gr~V~~~~~~~~~~ 495 (535)
+|++||++|+++..+
T Consensus 434 ~G~~v~~~g~~~~~d 448 (468)
T 3lnp_A 434 NGRCLLKNGELTTLN 448 (468)
T ss_dssp TTEEEEETTEESSSC
T ss_pred CCEEEEECCeECCCC
Confidence 999999999999876
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=345.56 Aligned_cols=380 Identities=19% Similarity=0.240 Sum_probs=255.9
Q ss_pred cCcccEEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCC--CCCceEEecCCCEEeecccccccccccccC-CC-
Q 009410 50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS- 121 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~--~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~- 121 (535)
.|+++++|+|++|+++++ .++++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..... |.
T Consensus 3 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~ 82 (447)
T 4f0r_A 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVLMPGLINLHGHSAMSLLRGLA 82 (447)
T ss_dssp --CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHTTSCEEEEEEEEEEEEEECEEEEEECGGGGGGTTSS
T ss_pred CCcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccccCCCCeEEeCCCcEEeeCccchhhChhhHhhccCC
Confidence 357889999999998764 3689999999999999985432 246889999999999999999999965421 11
Q ss_pred --------------------CchhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee
Q 009410 122 --------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (535)
Q Consensus 122 --------------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (535)
.++++... ....++++||||++|+... .....+...+.+.+..+..+.....
T Consensus 83 ~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~~~~~ 158 (447)
T 4f0r_A 83 DDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMYFY----NAAVARAGLASGMRTFVGCSILEFP 158 (447)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECBSC----HHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhcCCC
Confidence 22232322 3445788999999998432 2344444445554433333222111
Q ss_pred e---cCChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcC
Q 009410 178 T---KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELG 252 (535)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g 252 (535)
. ...++..+...++.+. .+.+.+++...+++....+.+.++++++.|+++|+++.+|+.+. ......++ ..|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~---~~g 235 (447)
T 4f0r_A 159 TNYASNADDYIAKGMAERSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVK---EHG 235 (447)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHS
T ss_pred cccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH---HcC
Confidence 1 1122344444444422 36677888887777778899999999999999999999999655 33333222 223
Q ss_pred CCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcc
Q 009410 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (535)
... +.. +.-....+.+..+.|+...+. ++++.+++.|+.+..||... +.
T Consensus 236 ~~~----------------i~~-~~~~g~~~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~~p~~~-------------~~ 284 (447)
T 4f0r_A 236 QRP----------------LAR-LQRLGLLSPRLVAAHMVHLND-AEVELAARHGLSTAHNPASN-------------MK 284 (447)
T ss_dssp SCH----------------HHH-HHHHTCCSTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHHH-------------HH
T ss_pred CCH----------------HHH-HHHcCCCCCCcEEEeccCCCH-HHHHHHHHcCCEEEECchhh-------------hh
Confidence 211 111 122233456788999998877 88999999999998887641 11
Q ss_pred ccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh--cCCCCHH
Q 009410 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE--SGQISVT 410 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~ls~~ 410 (535)
.+... .++++++++|+++++|||+.+.+...+ +|. +..+...+++... ..++|++
T Consensus 285 ~~~~~------------~~~~~~~~~Gv~v~lgTD~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~l~~~ 341 (447)
T 4f0r_A 285 LASGI------------SPVSKLMDAGVAVGIGTDGAASNNKLD-----MLA------ETRLAALLAKVGTLDPTSVPAA 341 (447)
T ss_dssp TTCCC------------CCHHHHHHTTCEEEECCCCGGGTCCCC-----HHH------HHHHHHHHHHHHHTCTTSSCHH
T ss_pred cCCCC------------CcHHHHHHCCCcEEEeCCCCcCCCCCC-----HHH------HHHHHHHHhhhhccCCCCCCHH
Confidence 11111 128899999999999999765422111 111 2333333333332 4679999
Q ss_pred HHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCe
Q 009410 411 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 490 (535)
Q Consensus 411 eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~ 490 (535)
++++++|.|||+++|+++++|+|++||.|||||+|.++++..+..++.+. ..+... ..+|..||++|++||++|+
T Consensus 342 ~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~---~~~~~~--~~~v~~v~v~G~~v~~~g~ 416 (447)
T 4f0r_A 342 AAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPAFDPISH---VVYAAG--REQVSHVWVKGRALMRERK 416 (447)
T ss_dssp HHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHHH---HHHTCC--GGGEEEEEETTEEEEETTE
T ss_pred HHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCCCcChHHH---heecCC--CCCceEEEECCEEEEECCe
Confidence 99999999999999998889999999999999999987765543222111 111111 3589999999999999999
Q ss_pred ecccC
Q 009410 491 LNVVP 495 (535)
Q Consensus 491 ~~~~~ 495 (535)
++..+
T Consensus 417 ~~~~d 421 (447)
T 4f0r_A 417 LTTLD 421 (447)
T ss_dssp ESSSC
T ss_pred ECcCC
Confidence 99876
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.71 Aligned_cols=361 Identities=18% Similarity=0.150 Sum_probs=235.1
Q ss_pred cccEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCC-----CCc
Q 009410 52 SSKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SET 123 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g-----~~~ 123 (535)
+.+++|+|++|+|+++. ++++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+...... ...
T Consensus 3 ~~~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~ 82 (423)
T 3feq_A 3 LTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQP 82 (423)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEECSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSC
T ss_pred ceEEEEEccEEEeCCCCcccCCceEEEECCEEEEecCCCCCCCCCeEEeCCCCEECCCeeeeEeeecccCCChhhhhcCC
Confidence 45799999999998753 4789999999999999865556678999999999999999999999876210 011
Q ss_pred hhhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccce--------------------------
Q 009410 124 IDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF-------------------------- 173 (535)
Q Consensus 124 ~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 173 (535)
++.. ...+..++++||||++|+..... ...+.++.....+++.+.....
T Consensus 83 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~~~~~~~~g~r~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (423)
T 3feq_A 83 NILAAIRSLPILDAMLSRGFTSVRDAGGADW-SLMQAVETGLVSGPRIFPSGKALSQTGGHGDFRPRGDLLEPCSCCFRT 161 (423)
T ss_dssp HHHHHHTHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCSCEEECCCSEEECTTSTTCCCCC---CCCCCSSCCT
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCcccccCCCCccccccccccccccccccc
Confidence 1111 23455679999999999864322 2333333222222332111110
Q ss_pred --eeeeecCChhhHHHHHHHHHHcCCCEEEEEee--------cCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHH
Q 009410 174 --HMAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE 243 (535)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 243 (535)
+.......++..+.++++. ..|++.+|++.+ +.+...++++.++++++.|+++|+++.+|+.+...+..
T Consensus 162 ~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~ 240 (423)
T 3feq_A 162 GAIARVVDGVEGVRLAVREEI-QKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRAIAR 240 (423)
T ss_dssp TCSEEECCSHHHHHHHHHHHH-HTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHHHHH
T ss_pred cccceecCCHHHHHHHHHHHH-HcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence 0111122344556666666 689999999876 23445789999999999999999999999986543322
Q ss_pred HHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCc
Q 009410 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (535)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~ 323 (535)
.+ +.| .. .+.|+...+. +.++.+++.|+.++++.......+..
T Consensus 241 ~l----~~g-------------------------------~~-~i~H~~~~~~-~~~~~l~~~gv~~~pt~~~~~~~~~~ 283 (423)
T 3feq_A 241 AV----RCG-------------------------------VR-TIEHGNLVDE-AAAKLMHEHGAFVVPTLVTYDALAKH 283 (423)
T ss_dssp HH----HHT-------------------------------CC-EEEEEEECCH-HHHHHHHHHTCEEECCTHHHHHHHHH
T ss_pred HH----HcC-------------------------------CC-EEeccCcCCH-HHHHHHHHCCCccccchHHHHHHHhc
Confidence 22 122 22 4678776665 88899999998886553322111110
Q ss_pred ccccCcCccccceeEEcCCCCCc------ccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHH
Q 009410 324 SWLWHSDFVTAAKYVMSPPIRAS------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLV 397 (535)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~r~~------~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 397 (535)
... ....|..... .....++.++++|+++++|||+....... . ...+.
T Consensus 284 ~~~----------~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~~~~~-~-------------~~e~~-- 337 (423)
T 3feq_A 284 GAE----------FGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGEMHAF-Q-------------SGEFR-- 337 (423)
T ss_dssp TGG----------GTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGGGGGG-T-------------THHHH--
T ss_pred ccc----------cCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCcc-h-------------HHHHH--
Confidence 000 0001111111 12356888999999999999975321111 0 11221
Q ss_pred HHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEE
Q 009410 398 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 477 (535)
Q Consensus 398 ~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~ 477 (535)
+..+. +|++|+|+++|.|||+++|+++++|+|++||.|||||+|.|+...+.. +.+. ..+|+.
T Consensus 338 ---~~~~~-ls~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~p~~~~~~-----------~~~~--~~~v~~ 400 (423)
T 3feq_A 338 ---IRAEV-LGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIGV-----------VADE--GARVEY 400 (423)
T ss_dssp ---HHHTT-SCHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCGGG-----------TSSS--TTSEEE
T ss_pred ---HHHhh-CCHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEECCChhhCHHH-----------Hhcc--CCCceE
Confidence 12244 999999999999999999998889999999999999999886543321 1000 147999
Q ss_pred EEECCEEEEECCeeccc
Q 009410 478 TIAGGRVVWENDELNVV 494 (535)
Q Consensus 478 v~~~Gr~V~~~~~~~~~ 494 (535)
||++|++|+++++..+.
T Consensus 401 v~~~G~~v~~~~~~~~~ 417 (423)
T 3feq_A 401 VLQRGTLVKRQAAGREG 417 (423)
T ss_dssp EEETTEEEEEC------
T ss_pred EEECCEEEeCCcccccc
Confidence 99999999999887764
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.83 Aligned_cols=366 Identities=15% Similarity=0.172 Sum_probs=238.3
Q ss_pred ccEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCC-----CCch
Q 009410 53 SKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETI 124 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g-----~~~~ 124 (535)
.+++|+|++|+|+++. ++++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+...... ..+.
T Consensus 4 ~~~~i~n~~i~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~~~~~~~~~ 83 (426)
T 2r8c_A 4 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPN 83 (426)
T ss_dssp CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSCH
T ss_pred ccEEEEeeEEEeCCCCcccCCceEEEECCEEEEEcCCCCCCCCCeEEECCCCEEcCCeEeeeeccccccCCchhhccCCH
Confidence 5699999999998642 5789999999999999865556678999999999999999999999876210 0111
Q ss_pred hhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccce---------------------------
Q 009410 125 DDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGF--------------------------- 173 (535)
Q Consensus 125 ~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 173 (535)
+.. ...+..++++||||++|+..... ...+.++.....+++.......
T Consensus 84 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~i~~~~~~gpri~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 162 (426)
T 2r8c_A 84 VLVTLRAVPIMRAMLRRGFTTVRDAGGAGY-PFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCV 162 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSCSSSSBC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCCcccCCCCCcccccccccccccccccccc
Confidence 111 13345679999999999965422 2333333222222232111110
Q ss_pred ----eeeeecCChhhHHHHHHHHHHcCCCEEEEEeec--------CCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009410 174 ----HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (535)
Q Consensus 174 ----~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 241 (535)
+.......++..+.+++.. +.|++.+|++.+. ++...++++.++++++.|+++|+++.+|+.+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i 241 (426)
T 2r8c_A 163 RVGALGRVADGVDEVRRAVREEL-QMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAAI 241 (426)
T ss_dssp CTTCCEEECCSHHHHHHHHHHHH-HHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHHHH
T ss_pred cccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence 0111222345566666666 6799999998762 34457899999999999999999999999866433
Q ss_pred HHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEee
Q 009410 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (535)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 321 (535)
...+ +. +.. .+.|+...+. +.++.+++.|+.++++.......+
T Consensus 242 ~~al----~~-------------------------------G~~-~i~H~~~~~~-~~~~~~~~~gv~~~pt~~~~~~~~ 284 (426)
T 2r8c_A 242 ARAV----RC-------------------------------GVR-TIEHGNLIDD-ETARLVAEHGAYVVPTLVTYDALA 284 (426)
T ss_dssp HHHH----HT-------------------------------TCS-EEEECTTCCH-HHHHHHHHTTCEEECCTHHHHHHH
T ss_pred HHHH----Hc-------------------------------CCC-EEecCCcCCH-HHHHHHHHcCCeEeechHHHHHHh
Confidence 2222 22 222 4789888776 889999999988865533221111
Q ss_pred CcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHH
Q 009410 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTM 401 (535)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 401 (535)
...... .+..... .............++.++++|+++++|||+.+...... ...+. +
T Consensus 285 ~~~~~~--~~~p~~~--~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~~~~~--------------~~e~~-----~ 341 (426)
T 2r8c_A 285 SEGEKY--GLPPESI--AKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQ--------------SDEFR-----I 341 (426)
T ss_dssp HHTTTT--TCCHHHH--TTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGGGGT--------------THHHH-----H
T ss_pred hhcccc--CCCHHHH--HHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCcch--------------HHHHH-----H
Confidence 100000 0000000 00000011234668899999999999999753221110 01111 1
Q ss_pred HhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEEC
Q 009410 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAG 481 (535)
Q Consensus 402 ~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~ 481 (535)
..+. +|++|+|+++|.|||+++|+++++|+|++||.|||||+|.|+...+.. +.+. ..+|+.||++
T Consensus 342 ~~~~-l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~p~~~~~~-----------~~~~--~~~v~~v~~~ 407 (426)
T 2r8c_A 342 LAEV-LSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDC-----------LLGQ--GEHIPLVMKD 407 (426)
T ss_dssp HTTT-SCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGGG-----------TCSS--STTCCEEEET
T ss_pred HHhc-CCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCChHhCHHH-----------HhCc--CCcceEEEEC
Confidence 2244 999999999999999999998889999999999999999886543321 0000 1479999999
Q ss_pred CEEEEECCeeccc
Q 009410 482 GRVVWENDELNVV 494 (535)
Q Consensus 482 Gr~V~~~~~~~~~ 494 (535)
|++|+++++..+.
T Consensus 408 G~~v~~~~~~~~~ 420 (426)
T 2r8c_A 408 GRLFVNELEGHEG 420 (426)
T ss_dssp TEEEEETTC----
T ss_pred CEEEecccccccc
Confidence 9999999887664
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=340.12 Aligned_cols=377 Identities=16% Similarity=0.186 Sum_probs=253.6
Q ss_pred cCcccEEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCC--CCCCceEEecCCCEEeecccccccccccccC-C--
Q 009410 50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-- 120 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~--~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g-- 120 (535)
.++++++|+|++|+++++ .++++|+|+||+|++|++... .+.+.++||++|++|+|||||+|+|+..... |
T Consensus 5 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~ 84 (451)
T 4dyk_A 5 RNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGLA 84 (451)
T ss_dssp -CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHTTTCEEEEEEEEEEEEEECEEECCCCGGGGGGTTSS
T ss_pred cchhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCccccccCCCCeEEeCCCCEEeecccchhhChhhHHhccCC
Confidence 346789999999999653 268999999999999998542 2346899999999999999999999965521 1
Q ss_pred -------------------CCchhhhHHH----HHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee
Q 009410 121 -------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (535)
Q Consensus 121 -------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (535)
..++++++.. ...++++||||++|+... .....+...+.+.+..+........
T Consensus 85 ~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~a~~~~g~r~~~~~~~~~~~ 160 (451)
T 4dyk_A 85 DDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFY----PQAICGVVHDSGVRAQVAIPVLDFP 160 (451)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC----HHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhhCCC
Confidence 1223333332 344569999999998432 2334444444444433332222111
Q ss_pred e---cCChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcC
Q 009410 178 T---KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELG 252 (535)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g 252 (535)
. ....+..+...++.+. .+...+++.+.++..+..+++.++++++.|+++|+++++|+.+. ......++ ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~g 237 (451)
T 4dyk_A 161 IPGARDSAEAIRQGMALFDDLKHHPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAME---RNG 237 (451)
T ss_dssp BTTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHS
T ss_pred CccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhC
Confidence 1 1122334444444422 36677888778887788899999999999999999999999554 23332222 222
Q ss_pred CCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcc
Q 009410 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (535)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (535)
... +. .+......+.++.+.|+...+. ++++.+++.|+.++.||... +.
T Consensus 238 ~~~----------------i~-~~~~~g~~~~~~~~~H~~~~~~-~~~~~l~~~g~~v~~~p~s~-------------~~ 286 (451)
T 4dyk_A 238 ERP----------------LA-RLHRLGLLGPRFQAVHMTQVDN-DDLAMLVETNSSVIHCPESN-------------LK 286 (451)
T ss_dssp SCH----------------HH-HHHHTTCCSTTEEEEECCCCCH-HHHHHHHHHTCEEEECHHHH-------------HH
T ss_pred CCH----------------HH-HHHHCCCCCCCeEEEECCCCCH-HHHHHHHHcCCEEEEChhhh-------------hh
Confidence 210 11 1122233456788999998877 88999999999999888642 11
Q ss_pred ccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH--hcCCCCHH
Q 009410 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV--ESGQISVT 410 (535)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~--~~~~ls~~ 410 (535)
.+... .++++++++|+++++|||+.+.+...+ +|. +.++....++.. ...++|++
T Consensus 287 ~~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~~ 343 (451)
T 4dyk_A 287 LASGF------------CPVEKLWQAGVNVAIGTDGAASNNDLD-----LLG------ETRTAALLAKAVYGQATALDAH 343 (451)
T ss_dssp TTCCC------------CCHHHHHHHTCCEEECCCCGGGSSCCC-----HHH------HHHHHHHHHHHHHTCTTSSCHH
T ss_pred ccCCc------------ccHHHHHhCCCeEEEECCCCccCCCCC-----HHH------HHHHHHHHhhhhcCCCCCCCHH
Confidence 11111 128889999999999999765322211 111 223333333332 24679999
Q ss_pred HHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCee---EeeEEEEEEECCEEEEE
Q 009410 411 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR---VKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 411 eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~---~~~~v~~v~~~Gr~V~~ 487 (535)
++|+++|.|||+++|+++++|+|++||.|||||+|.+++...+. +.|+.... ...+|..||++|++||+
T Consensus 344 ~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~~~~~v~~v~v~G~~v~~ 415 (451)
T 4dyk_A 344 RALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPV--------YDPVSQLIYASGRDCVRHVWVGGRQLLD 415 (451)
T ss_dssp HHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGCSC--------SCHHHHHHHHCCGGGEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccCCC--------CCHHHHhhccCCCCCccEEEECCEEEEE
Confidence 99999999999999998889999999999999999887654332 12222210 12479999999999999
Q ss_pred CCeecccC
Q 009410 488 NDELNVVP 495 (535)
Q Consensus 488 ~~~~~~~~ 495 (535)
+|+++..+
T Consensus 416 ~g~~~~~d 423 (451)
T 4dyk_A 416 DGRLLRHD 423 (451)
T ss_dssp TTEESSSC
T ss_pred CCEECcCC
Confidence 99999876
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=341.38 Aligned_cols=375 Identities=19% Similarity=0.214 Sum_probs=252.2
Q ss_pred cccEEEEccEEEcCCC----ceeeeEEEeCCEEEEeeCCCCCC---CCceEEecCCCEEeecccccccccccccC-CC--
Q 009410 52 SSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-- 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~~---~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~-- 121 (535)
.++++|+|++|+++++ .++++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+..... +.
T Consensus 13 ~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~~ 92 (472)
T 4dzh_A 13 PCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVAD 92 (472)
T ss_dssp EEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHEEEEEEEEEEEEEEEECEEEEEECGGGGGGTTSSC
T ss_pred cCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcCCCCeEEeCCCcEEEECccccccChhhHHhccccC
Confidence 5789999999998763 36899999999999999854322 35789999999999999999999977521 10
Q ss_pred -------------------CchhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee-
Q 009410 122 -------------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI- 177 (535)
Q Consensus 122 -------------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (535)
.++++.+. ....++++||||++|+... .....+...+.+.+.....+.....
T Consensus 93 ~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~a~~~~g~r~~~~~~~~~~~~ 168 (472)
T 4dzh_A 93 DLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYFF----ADVQAAVYKQHGFRALVGAVIIDFPT 168 (472)
T ss_dssp SCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC----HHHHHHHHHHTTCEEEEEEEECSSCC
T ss_pred CCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHhCCeEEEEecccCCCc
Confidence 12222222 2344789999999998621 2334444444444433333222111
Q ss_pred --ecCChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCC
Q 009410 178 --TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGI 253 (535)
Q Consensus 178 --~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~ 253 (535)
.....+..+.+.++.+. .+...+++...++..+..+++.++++++.|+++|+++.+|+.+. ......++ ..|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~---~~g~ 245 (472)
T 4dzh_A 169 AWASSDDEYFARAGELHDQWRDDPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVA---QYGQ 245 (472)
T ss_dssp SSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHSS
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH---HhCC
Confidence 11123344444444432 35667888777777788899999999999999999999999543 33322222 2221
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccc
Q 009410 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 333 (535)
. .+..+ ......+.++.+.|+...+. ++++.+++.|+.++.||... +..
T Consensus 246 ~----------------~i~~~-~~~g~~~~~~~~~H~~~l~~-~~i~~l~~~g~~v~~~p~s~-------------~~~ 294 (472)
T 4dzh_A 246 R----------------PLARL-DRLGLVNDRLIAVHMTQLTE-AEIHLCAERGVSVVHCPESN-------------LKL 294 (472)
T ss_dssp C----------------HHHHH-HHHTCCSTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHHH-------------HHT
T ss_pred C----------------HHHHH-HHcCCCCCCeEEEeccCCCH-HHHHHHHHcCCEEEEChHHH-------------Hhc
Confidence 1 01112 22233456788999998887 88999999999999887642 111
Q ss_pred cceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH--hcCCCCHHH
Q 009410 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV--ESGQISVTD 411 (535)
Q Consensus 334 ~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~--~~~~ls~~e 411 (535)
+... .+++.++++|+++++|||+...+...+ +|. ++++.....+.. ...++|+++
T Consensus 295 ~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~-----~~~------~~~~a~~~~~~~~~~~~~l~~~~ 351 (472)
T 4dzh_A 295 ASGF------------CPACALQRASVNLAIGTDGCASNNDLD-----MFS------ENRTAAILAKAVANDATALDAAT 351 (472)
T ss_dssp TCCC------------CCHHHHHHTTCEEEECCCCTTSSCCCC-----HHH------HHHHHHHHHHHHHTCTTSSCHHH
T ss_pred CCCC------------ccHHHHHHCCCCEEEECCCCcCCCCCC-----HHH------HHHHHHHHhhhhcCCCCcCCHHH
Confidence 1111 128899999999999999764322211 111 223322222222 235799999
Q ss_pred HHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCee---EeeEEEEEEECCEEEEEC
Q 009410 412 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR---VKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~---~~~~v~~v~~~Gr~V~~~ 488 (535)
+|+++|.|||+++|+++++|+|++||.|||||+|.+++...+. +.|+.... ...+|..||++|++||++
T Consensus 352 al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~~~~~~l~~~~~~~~V~~v~v~G~~v~~~ 423 (472)
T 4dzh_A 352 TLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPL--------HHVLSQLIYAAGRHQVTDVWIAGKPKLVQ 423 (472)
T ss_dssp HHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSC--------SCHHHHHHHTCCGGGEEEEEETTEEEEET
T ss_pred HHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCCc--------cCHHHHHhhcCCCCCceEEEECCEEEEEC
Confidence 9999999999999998889999999999999999887653332 12222211 134799999999999999
Q ss_pred CeecccC
Q 009410 489 DELNVVP 495 (535)
Q Consensus 489 ~~~~~~~ 495 (535)
|+++..+
T Consensus 424 g~~~~~d 430 (472)
T 4dzh_A 424 RELIDMD 430 (472)
T ss_dssp TEETTCC
T ss_pred CEECcCC
Confidence 9999876
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=333.61 Aligned_cols=397 Identities=18% Similarity=0.175 Sum_probs=273.2
Q ss_pred cCcccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhh
Q 009410 50 QSSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~ 127 (535)
.|+++++|+|++|+|+++ ...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+...... .+.
T Consensus 4 ~~~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~--~~~-- 78 (480)
T 3gip_A 4 AEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-HPARHAWDASGKIVAPGFIDVHGHDDLMFVE--KPD-- 78 (480)
T ss_dssp -CCEEEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCEEEEEECTTSEEEECEEESSCCCTTHHHH--STT--
T ss_pred cccCCEEEECcEEECCCCCeeeeeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEccCEEeccccccccccC--Chh--
Confidence 356789999999999876 478999999999999998643 4468899999999999999999998654111 111
Q ss_pred HHHHHHHHhCCcEEEecc---------ccCCCCC-h---------HHHHHHHHHHh--cccccccceeeeee--------
Q 009410 128 FSGQAAALAGGTTMHIDF---------VIPINGS-L---------TAGFEAYEKKA--KNSCMDYGFHMAIT-------- 178 (535)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~---------~~~~~~~-~---------~~~~~~~~~~~--~~~~~~~~~~~~~~-------- 178 (535)
....+++||||+++. ....... . +..+..+.... ....++++++.+..
T Consensus 79 ---~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g 155 (480)
T 3gip_A 79 ---LRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMR 155 (480)
T ss_dssp ---CHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCS
T ss_pred ---HHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCCCCceEEEccccHHHHHHhcC
Confidence 235589999999983 1111000 0 11122222221 23455666554322
Q ss_pred ----cCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHc
Q 009410 179 ----KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251 (535)
Q Consensus 179 ----~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 251 (535)
..+.+...++.++.+ +.|+.+++.+..|......+.+++.++++.++++|.++.+|+++...
T Consensus 156 ~~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~----------- 224 (480)
T 3gip_A 156 DPQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNEAD----------- 224 (480)
T ss_dssp STTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTTGGGCCHHHHHHHHHHHHHTTCEEEEECSCSST-----------
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCCcccCCHHHHHHHHHHHHHcCCEEEEEecCccc-----------
Confidence 123445566666553 57999999988776555568899999999999999999999976421
Q ss_pred CCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc---------CHHHHHHHHHHHHcCCcEEeccccceEeeC
Q 009410 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------SMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (535)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~---------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 322 (535)
.+.+++.++++++++.+.++++.|++ ..+.++.++.+++.|++|+++.+++++..+
T Consensus 225 ---------------~~~~a~~e~i~la~~~g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t 289 (480)
T 3gip_A 225 ---------------GVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSST 289 (480)
T ss_dssp ---------------THHHHHHHHHHHHHHHCCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCEEEEECSCSCEEE
T ss_pred ---------------cHHHHHHHHHHHHHHhCCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCceEEEeeccccCcc
Confidence 12466788889999999999999998 367778899999999999999999998887
Q ss_pred cccccCcCccccceeEE---cCCCCC-----------cccHHHHH-----------------HHHhcCCeEEEeCCCCCC
Q 009410 323 DSWLWHSDFVTAAKYVM---SPPIRA-----------SGHNKALQ-----------------AALATGILQLVGTDHCAF 371 (535)
Q Consensus 323 ~~~~~~~~~~~~~~~~~---~p~~r~-----------~~~~~~~~-----------------~~l~~Gv~~~lgtD~~~~ 371 (535)
...+.+........... .|+.+. ....+.+. ..+..+....+|||+.+.
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~gsD~~~~ 369 (480)
T 3gip_A 290 ILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPN 369 (480)
T ss_dssp ECCGGGTTTSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTT
T ss_pred hhhhcCHHHHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHHHHHHcCCCeEEecCCccc
Confidence 65554432211111000 144422 11122222 222334557888997654
Q ss_pred ChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCce
Q 009410 372 NSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 450 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~ 450 (535)
... ++. ..+..++..+..+++ .+.+|++++++++|.+||+++|++ ++|+|++|+.|||||+|.+..+
T Consensus 370 ~~~-------~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~t~~~a~~~g~~-~~G~l~~G~~AD~vv~d~~~~~ 437 (480)
T 3gip_A 370 DAR-------PHP----RLWGSFTRVLGRYVREARLMTLEQAVARMTALPARVFGFA-ERGVLQPGAWADVVVFDPDTVA 437 (480)
T ss_dssp CSS-------CCT----HHHHHHHHHHHCCCCCTCSSCHHHHHHHHTHHHHHHHTCT-TCSSCSTTSBCCEEEECTTTCB
T ss_pred CCC-------CCh----hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHcCCC-CCCccCCCCCCCEEEEcCcccc
Confidence 322 111 234456666654555 466999999999999999999995 4699999999999999988754
Q ss_pred eeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecC
Q 009410 451 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 504 (535)
Q Consensus 451 ~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~ 504 (535)
.. ..+.+ .+.+ ...|.+||++|++||++|+++. .+|++|++.
T Consensus 438 ~~--~~~~~--~~~~------~~~v~~v~v~G~~v~~~g~~~~--~~G~~lr~~ 479 (480)
T 3gip_A 438 DR--ATWDE--PTLA------SVGIAGVLVNGAEVFPQPPADG--RPGQVLRAG 479 (480)
T ss_dssp CC--CCSSS--TTCC------CBSEEEEEETTEEEESSCCSSS--CCCCBCCC-
T ss_pred Cc--ccccc--cccc------CCCccEEEECCEEEEECCeEcC--CCCcCcCCC
Confidence 32 11111 1222 3469999999999999999998 589999864
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=332.52 Aligned_cols=375 Identities=17% Similarity=0.158 Sum_probs=247.7
Q ss_pred EEEEcc-EEEcCCC----ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C--------
Q 009410 55 ILIKGG-TVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-------- 120 (535)
Q Consensus 55 ~vi~n~-~vi~~~~----~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g-------- 120 (535)
++|+|+ .|+++++ .++++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..... +
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~~~~ 81 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERVT 81 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCCCTTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGGGSSCC
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCCCCCCCeEEeCCCCEEecCeeecccccchhhhcccccCCCCC
Confidence 789999 7777664 2689999999999999987554557899999999999999999999976522 1
Q ss_pred -------------------CCchhhhH----HHHHHHHhCCcEEEeccccCCCC-----ChHHHHHHHHHHhcccccccc
Q 009410 121 -------------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYG 172 (535)
Q Consensus 121 -------------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 172 (535)
..++++++ .....++++||||+.|+...... .....++...+.+.+..+..+
T Consensus 82 l~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~ 161 (456)
T 3ls9_A 82 MASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARS 161 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCEEEEEcc
Confidence 11122222 12344689999999999433222 233345555555544333222
Q ss_pred eeee------e-----ecCChhhHHHHHHHHHH-cC---CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 173 FHMA------I-----TKWDEVVSDEMEVMVKE-KG---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 173 ~~~~------~-----~~~~~~~~~~~~~~~~~-~g---~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
.+.. . .....+..++..++.+. .+ ...+++...+++....+++.++++++.|+++|+++++|+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e 241 (456)
T 3ls9_A 162 SMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYE 241 (456)
T ss_dssp CCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEECCCCTTTSCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 2110 0 01112334444454432 23 44566667777778889999999999999999999999966
Q ss_pred hhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccc
Q 009410 238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (535)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~ 317 (535)
........+. .|.. ..+.+......+.++.+.|+...+. ++++.+++.|+.++.||..+
T Consensus 242 ~~~~~~~~~~---~~~~-----------------~~~~~~~~g~~~~~~~i~H~~~~~~-~~~~~l~~~g~~~~~~p~s~ 300 (456)
T 3ls9_A 242 PLDAGMSDHL---YGMT-----------------PWRFLEKHGWASDRVWLAHAVVPPR-EEIPEFADAGVAIAHLIAPD 300 (456)
T ss_dssp TTHHHHHHHH---HSSC-----------------HHHHHHHTTCSSTTEEEEECCSCCG-GGHHHHHHHTCEEEECHHHH
T ss_pred CchHHHHHHH---hCCC-----------------HHHHHHHcCCCCCCcEEEeccCCCH-HHHHHHHHcCCEEEEChhHH
Confidence 5433222221 1211 0111222233456788999988776 78999999999999888642
Q ss_pred eEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHH
Q 009410 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLV 397 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 397 (535)
. ..+... .+++.++++|+++++|||+.+.+.... +|. ++.+...
T Consensus 301 ~-------------~l~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~-----~~~------~~~~~~~ 344 (456)
T 3ls9_A 301 L-------------RMGWGL------------APIREYLDAGITVGFGTTGSASNDGGN-----LLG------DLRLAAL 344 (456)
T ss_dssp H-------------HTTCCC------------CCHHHHHHTTCEEEECCCCTTSSCCCC-----HHH------HHHHHHH
T ss_pred h-------------hcCCCc------------chHHHHHHCCCcEEEECCCCccCCCCC-----HHH------HHHHHHH
Confidence 1 111111 128899999999999999765432211 111 1222222
Q ss_pred HHHHHhcC----CCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeE--
Q 009410 398 WDTMVESG----QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV-- 471 (535)
Q Consensus 398 ~~~~~~~~----~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~-- 471 (535)
..+..... ++|++++|+++|.|||+++|+++ +|+|++||.|||||+|.+++...+. +.|+....+
T Consensus 345 ~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~ 415 (456)
T 3ls9_A 345 AHRPADPNEPEKWLSARELLRMATRGSAECLGRPD-LGVLEEGRAADIACWRLDGVDRVGV--------HDPAIGLIMTG 415 (456)
T ss_dssp HTGGGSTTCGGGSCCHHHHHHHTTHHHHHHTTCTT-SSCCSTTSBCCEEEEESCSGGGTTB--------SSHHHHHHHCC
T ss_pred HhccccccccccCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEEeCCCCccCCC--------CChHHHhhccC
Confidence 21111011 69999999999999999999976 9999999999999999987654432 122221111
Q ss_pred -eeEEEEEEECCEEEEECCeecccC
Q 009410 472 -KGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 472 -~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
..+|..||++|++||++|+++..+
T Consensus 416 ~~~~v~~v~v~G~~v~~~g~~~~~d 440 (456)
T 3ls9_A 416 LSDRASLVVVNGQVLVENERPVLAD 440 (456)
T ss_dssp SBCCCSEEEETTEEEEETTEESSSC
T ss_pred CCCCeeEEEECCEEEEECCEeCCCC
Confidence 247999999999999999999876
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=331.70 Aligned_cols=377 Identities=17% Similarity=0.176 Sum_probs=235.4
Q ss_pred cccEEEEccE-EEcCC--------CceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC
Q 009410 52 SSKILIKGGT-VVNAH--------HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS 121 (535)
Q Consensus 52 ~~~~vi~n~~-vi~~~--------~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~ 121 (535)
.++++|+|++ |++++ ...+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..... +.
T Consensus 9 ~~~~li~n~~~i~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~g~ 87 (492)
T 2paj_A 9 QPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP-RPGETIVDATDCVIYPAWVNTHHHLFQSLLKGE 87 (492)
T ss_dssp -CEEEEECBSEEBCCCCSSSSSCSBCCCCCEEEETTEEEEESSCCC-CTTCEEEECBTCEEEECEECCCCCGGGGGCCSC
T ss_pred CCCeEEECCEEEEecCCccccccceecccEEEEECCEEEEEcCCCC-CCCCeEEECCCcEEeeCccccccChhhHhhcCc
Confidence 4679999999 99986 2367899999999999998653 345789999999999999999999876521 10
Q ss_pred ----------------------CchhhhHHHHHH----HHhCCcEEEeccccCCCC-----ChHHHHHHHHHHhcccccc
Q 009410 122 ----------------------ETIDDFFSGQAA----ALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMD 170 (535)
Q Consensus 122 ----------------------~~~~~~~~~~~~----~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 170 (535)
.+++++...... ++++||||++|+...... ......+...+.+.+....
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~ 167 (492)
T 2paj_A 88 PAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLL 167 (492)
T ss_dssp C-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcCCEEEEE
Confidence 123555444444 899999999998632211 1223333333333232221
Q ss_pred cceee-e------ee-----cCChhhHHHHHHHHHHc-CC---CEEEEEeecCCC-CcCCHHHHHHHHHHHHhcCCeEEE
Q 009410 171 YGFHM-A------IT-----KWDEVVSDEMEVMVKEK-GI---NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMV 233 (535)
Q Consensus 171 ~~~~~-~------~~-----~~~~~~~~~~~~~~~~~-g~---~~ik~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~ 233 (535)
.+... + .. ....+..+++..+.+.. +. ..++++..+.+. ...+.+.++++++.|++.|+++.+
T Consensus 168 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 247 (492)
T 2paj_A 168 RGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHS 247 (492)
T ss_dssp ECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEecccCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 11110 0 00 00122345555555332 21 347777776666 678999999999999999999999
Q ss_pred EcCCh-hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEe
Q 009410 234 HAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312 (535)
Q Consensus 234 H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~ 312 (535)
|+.+. .......+. .|.. .+..+.+ ....+.+..+.|+...+. +.++++++.|+.+..
T Consensus 248 H~~~~~~~~~~~~~~---~g~~----------------~~~~~~~-~g~~~~~~~i~H~~~~~~-~~i~~l~~~gv~v~~ 306 (492)
T 2paj_A 248 HLSETVGYQDSAYSM---YGKS----------------PVAFCGE-HDWLGSDVWYAHLVKVDA-DEIALLAQTGTGVAH 306 (492)
T ss_dssp ECC----------------CCC----------------HHHHHHH-TTCCSTTEEEESCCSCCH-HHHHHHHHHTCEEEE
T ss_pred EeCCChHHHHHHHHH---cCCC----------------HHHHHHH-CCCCCCCcEEEEEecCCH-HHHHHHHHcCCEEEE
Confidence 99763 222222211 1211 0111111 112234677889987766 779999999988887
Q ss_pred ccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHH
Q 009410 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEE 392 (535)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (535)
||... +..+. ..+| ++.++++|+++++|||+.+.+.... ++. +.
T Consensus 307 ~p~~~-------------~~l~~---~~~p---------~~~~~~~Gv~v~lgTD~~~~~~~~~-----~~~------~~ 350 (492)
T 2paj_A 307 CPQSN-------------GRLGS---GICP---------VREMADAGVPVSIGVDGAASNEAAD-----MIS------EV 350 (492)
T ss_dssp CHHHH-------------HCC--------C---------CTTHHHHTCCEEECCCHHHHCSCCS-----HHH------HH
T ss_pred Cchhh-------------cccCC---CCCC---------HHHHHHCCCcEEEeCCCCCCCCCCC-----HHH------HH
Confidence 76531 11111 1123 4568899999999999754211111 111 11
Q ss_pred HHHHHHHHH----------------HhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCC
Q 009410 393 RMHLVWDTM----------------VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS 456 (535)
Q Consensus 393 ~l~~~~~~~----------------~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~ 456 (535)
......... ....++|++++|+++|.|||+++|++ ++|+|++||.|||||+|.++++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lgl~-~~Gsl~~Gk~ADlvvld~~~~~~~~--- 426 (492)
T 2paj_A 351 HMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLD-EVGKVAVGYAADIAVYRLDDPRYFG--- 426 (492)
T ss_dssp HHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCT-TSSCCSTTSBCCEEEEECCSGGGTT---
T ss_pred HHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhCCC-CccccCCCCccCEEEEeCCCcccCC---
Confidence 111111111 12356999999999999999999997 7999999999999999988764321
Q ss_pred ccccCCCCCCCCeeE---eeEEEEEEECCEEEEECCeecccC
Q 009410 457 HHSRLDTNVYEGRRV---KGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 457 ~~~~~~~~p~~~~~~---~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
.++|+++... ..+|..||++|++||++|+++..+
T Consensus 427 -----~~~p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~~d 463 (492)
T 2paj_A 427 -----LHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVD 463 (492)
T ss_dssp -----CSSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCC
T ss_pred -----ccCHHHHHHhcCCCCCceEEEECCEEEEECCeeccCC
Confidence 1346654322 147999999999999999999875
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=333.11 Aligned_cols=384 Identities=16% Similarity=0.084 Sum_probs=242.1
Q ss_pred CcccEEEEccEEEcCCC---------------ceeeeEEEeCCEEEEeeCCCCCC---CCceEEecCCCEEeeccccccc
Q 009410 51 SSSKILIKGGTVVNAHH---------------QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHT 112 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~---------------~~~~~I~I~~G~I~~Vg~~~~~~---~~~~vID~~G~~vlPGlID~H~ 112 (535)
|+..++|.+++|+++.. .++++|+|+||||++|++....+ .++++||++|++|+|||||+|+
T Consensus 1 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~ 80 (475)
T 2ood_A 1 MSLTTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHI 80 (475)
T ss_dssp --CCEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEEECEEEEEE
T ss_pred CCccceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhccccCCCeEEeCCCcEEecceecCcc
Confidence 35567888999998654 25789999999999999753221 3578999999999999999999
Q ss_pred ccccccC----CCC-----------------chhhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhccc
Q 009410 113 HLAMEFM----GSE-----------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS 167 (535)
Q Consensus 113 H~~~~~~----g~~-----------------~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~ 167 (535)
|+..... +.. +++.+ ......++++||||++|+...........++...+.+.+.
T Consensus 81 Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~ 160 (475)
T 2ood_A 81 HLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRV 160 (475)
T ss_dssp EGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCE
T ss_pred cHHhHhhcCCCCCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeE
Confidence 9864421 110 12233 2345678999999999975322111223333334444332
Q ss_pred ccccceeee-ee----cCChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhc-CCeEEEEcCCh-h
Q 009410 168 CMDYGFHMA-IT----KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENG-D 239 (535)
Q Consensus 168 ~~~~~~~~~-~~----~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~-~ 239 (535)
......... .. ....+..++..++.+. .+...+++.+.+++...++++.++++++.|++. |+++.+|+... .
T Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~~g~~v~~H~~e~~~ 240 (475)
T 2ood_A 161 IAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPA 240 (475)
T ss_dssp EECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEEEECSCCHH
T ss_pred EEEeeecccCCCcccccCHHHHHHHHHHHHHHhccCCceEEEEeccccCcCCHHHHHHHHHHHHhCCCCcEEEeeCCChH
Confidence 211111100 01 1112233444444432 245567777777766778999999999999999 99999999654 3
Q ss_pred hHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceE
Q 009410 240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGL 319 (535)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~ 319 (535)
......+ ..|... . ...+++.....+.+..+.|+...+. +.++++++.|+.+..||....
T Consensus 241 ~~~~~~~---~~g~~~--------~-------~~~~~~~~g~~~~~~~i~H~~~~~~-~~i~~~~~~g~~~~~~P~~~~- 300 (475)
T 2ood_A 241 ECSGVLV---EHPDCQ--------D-------YLGVYEKFDLVGPKFSGGHGVYLSN-NEFRRMSKKGAAVVFCPCSNL- 300 (475)
T ss_dssp HHHHHHH---HCTTCS--------S-------HHHHHHTTTCCSTTEEEECCTTCCH-HHHHHHHHHTCEEEECHHHHH-
T ss_pred HHHHHHH---HcCCCc--------c-------HHHHHHHcCCCCCCcEEEEeecCCH-HHHHHHHHcCCEEEEChhhhh-
Confidence 2332222 111100 0 0111111122456778899988776 889999999988887775311
Q ss_pred eeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCe--EEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHH
Q 009410 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL--QLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLV 397 (535)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~--~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 397 (535)
..+. ..+| +++++++|++ +++|||+.+..... +|. +......
T Consensus 301 ------------~l~~---~~~~---------~~~~~~~Gv~~~~~lgTD~~~~~~~~------~~~------~~~~~~~ 344 (475)
T 2ood_A 301 ------------FLGS---GLFR---------LGRATDPEHRVKMSFGTDVGGGNRFS------MIS------VLDDAYK 344 (475)
T ss_dssp ------------HTTC---CCCC---------HHHHTCTTSCCEEEECCCBTTBSCCC------HHH------HHHHHHH
T ss_pred ------------hccc---CcCC---------HHHHHhCCCCCcEEEEccCCCCCCcC------HHH------HHHHHHH
Confidence 1111 1122 8899999999 99999986522111 122 1111111
Q ss_pred HHH----HH--------------hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCcc-
Q 009410 398 WDT----MV--------------ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH- 458 (535)
Q Consensus 398 ~~~----~~--------------~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~- 458 (535)
... +. ...++|++++|+++|.|||+++|+++++|+|++||.|||||+|.++++.++.+...
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~GsL~~Gk~ADlvvld~~~~~~~~~~~~~~ 424 (475)
T 2ood_A 345 VGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSL 424 (475)
T ss_dssp HHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCSSTTHHHHHTT
T ss_pred HhcccchhccCCcccccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCEEEEeCCCccccccccccc
Confidence 111 01 12679999999999999999999988899999999999999999877654432111
Q ss_pred -----c----cCCCCCCCCeeE---eeEEEEEEECCEEEEECCe
Q 009410 459 -----S----RLDTNVYEGRRV---KGKVEVTIAGGRVVWENDE 490 (535)
Q Consensus 459 -----~----~~~~~p~~~~~~---~~~v~~v~~~Gr~V~~~~~ 490 (535)
+ ...++||++..+ .++|..||++|++||++++
T Consensus 425 ~~~~~s~~~~~~~~~p~~~~~~~~~~~~V~~t~v~G~~v~~~~~ 468 (475)
T 2ood_A 425 IADGAGPRTVDEAASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468 (475)
T ss_dssp C--CCSCCSHHHHHHHHHHHHHHCCGGGEEEEEETTEEEEECC-
T ss_pred cccccccccccchhhHHHHHHhhCCCCCeeEEEECCEEEEECCC
Confidence 0 112456665544 3689999999999999865
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=311.57 Aligned_cols=350 Identities=17% Similarity=0.160 Sum_probs=224.4
Q ss_pred cCcccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCC------
Q 009410 50 QSSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------ 121 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~------ 121 (535)
.|+.+++|+|++|+++++ ...++|+|+||||++|++. .+.+.++||++|++|+|||||+|+|+. .....
T Consensus 3 ~~~~~~~i~n~~v~~~~~~~~~~~~v~I~~g~I~~ig~~--~~~~~~viD~~g~~v~PGlID~H~H~~-~~~~~~~~~~~ 79 (408)
T 3be7_A 3 LTSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLMDSHVHIV-GNDSKGEESIA 79 (408)
T ss_dssp --CCCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECC--CCSSSEEEEEEEEEEEECEEEEEECCS-SCCCCSGGGTT
T ss_pred cccceEEEEeeEEEeCCCCceeeeEEEEECCEEEEEeCC--CCCCCeEEECCCCEECcCceeeeEccc-CCCCcchhhhc
Confidence 346789999999999875 3348999999999999986 244678999999999999999999997 31111
Q ss_pred Cchhhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc----cccc------ccceeeeee---------
Q 009410 122 ETIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCM------DYGFHMAIT--------- 178 (535)
Q Consensus 122 ~~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~--------- 178 (535)
.+++.. ......++++||||++|+..... ....++...+.+. +... ..+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (408)
T 3be7_A 80 DSSHMGTVWGVVNAEKTLMAGFTTVRNVGAANY--ADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYS 157 (408)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTEEEEEECCCSTT--HHHHHHHHHHTTSSCCCEEEECCSCBBCTTSTTSCCCSCTTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEeCCCccc--cCHHHHHHHHCCCCCCCEEEEccceeeccCCCCcccccccccccc
Confidence 122221 11467789999999999864322 2223333333222 1110 011111100
Q ss_pred ----cCC-hhhHHHHHHHHHHcCCCEEEEEeecC--------CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHH
Q 009410 179 ----KWD-EVVSDEMEVMVKEKGINSFKFFMAYK--------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ 245 (535)
Q Consensus 179 ----~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~--------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 245 (535)
... .+..+.++... ..|.+.+|++.+.. +....+.+.+.++++.|++.|+++.+|+.+...+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~ 236 (408)
T 3be7_A 158 SEGVVDSPWEARKMVRKNR-KYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAI 236 (408)
T ss_dssp CTTBCCSHHHHHHHHHHHH-HTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHH-hcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 001 12222333333 56889999986431 23567899999999999999999999998754322111
Q ss_pred HHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCccc
Q 009410 246 KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325 (535)
Q Consensus 246 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 325 (535)
+ .+.. .+.|+..... +.++++++.|+.+++++..+..+...
T Consensus 237 -------------------------------~----~g~~-~i~H~~~~~~-~~i~~~~~~g~~v~~~~~~~~~~~~~-- 277 (408)
T 3be7_A 237 -------------------------------K----AGVD-SVEHASFIDD-ETIDMAIKNNTVLSMDIFVSDYILGE-- 277 (408)
T ss_dssp -------------------------------H----HTCS-EEEECTTCCH-HHHHHHHHTTCEEECCCSTHHHHHTT--
T ss_pred -------------------------------H----cCCC-EEEECCCCCH-HHHHHHHHCCCEEeeeecHHHHhhhh--
Confidence 1 1222 5889988776 88999999998776554321100000
Q ss_pred ccCcCccccceeEEcCCCCCc------ccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHH
Q 009410 326 LWHSDFVTAAKYVMSPPIRAS------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWD 399 (535)
Q Consensus 326 ~~~~~~~~~~~~~~~p~~r~~------~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~ 399 (535)
+....+.|+.+.. .....++.++++|+++++|||+.+.+... .+ ..+.
T Consensus 278 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~~p~~~------~~--------~~~~---- 331 (408)
T 3be7_A 278 --------GAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGD------NA--------KQFA---- 331 (408)
T ss_dssp --------TTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTBCTTC------GG--------GHHH----
T ss_pred --------ccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCch------HH--------HHHH----
Confidence 0000000110000 11356788999999999999974321110 00 1121
Q ss_pred HHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEE
Q 009410 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTI 479 (535)
Q Consensus 400 ~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~ 479 (535)
.+.+. ++|++++++++|.|||+++|++ ++|+|++||.|||||+|.|+...+. ...+|+.||
T Consensus 332 ~~~~~-gls~~~al~~~T~n~A~~lgl~-~~G~i~~G~~ADlvvld~~p~~~~~-----------------~~~~v~~v~ 392 (408)
T 3be7_A 332 YMVEW-GMTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGVIENPLANIR-----------------TLEEVAFVM 392 (408)
T ss_dssp HHHHT-TCCHHHHHHTTTHHHHHHHTCS-SCSSCCTTSBCCEEEESSCTTTCGG-----------------GTTSCCEEE
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHHhCCC-cccccCCCCccCEEEECCCchhhHH-----------------HhhceeEEE
Confidence 22334 7999999999999999999997 8999999999999999988553221 013689999
Q ss_pred ECCEEEEECC
Q 009410 480 AGGRVVWEND 489 (535)
Q Consensus 480 ~~Gr~V~~~~ 489 (535)
++|++|+++.
T Consensus 393 ~~G~~v~~~~ 402 (408)
T 3be7_A 393 KEGKVYKREG 402 (408)
T ss_dssp ETTEEEEECC
T ss_pred ECCEEEeccc
Confidence 9999999874
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=319.46 Aligned_cols=374 Identities=16% Similarity=0.117 Sum_probs=231.4
Q ss_pred cccEEEEccEEEcCCC-----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEecCCCEEeecccccccccccccC-CC---
Q 009410 52 SSKILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~-----~~~~~I~I~~G~I~~Vg~~~~~~-~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~--- 121 (535)
+.+++|+|++|++++. .++++|+|+||||++|++....+ ++.++||++|++|+|||||+|+|+..... |.
T Consensus 8 m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~g~~~~ 87 (439)
T 2i9u_A 8 INLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHASQYKNLGIGMD 87 (439)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCGGGTTSCEEEEEEEEEEECEEEEEEEGGGGGGTTCCCS
T ss_pred cccEEEEeeEEEecCCccceEEeccEEEEECCEEEEecccccccCCCceEEcCCCeEEEecceecccccchHhhhCCcCC
Confidence 4679999999999762 35889999999999999754321 35689999999999999999999986421 10
Q ss_pred -C-----------------chhhhHH----HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeee-ee
Q 009410 122 -E-----------------TIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-IT 178 (535)
Q Consensus 122 -~-----------------~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 178 (535)
. +++.+.. ..+.++++||||++|+...........++...+.+.+.......... .+
T Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~p 167 (439)
T 2i9u_A 88 KELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCP 167 (439)
T ss_dssp SCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCC
T ss_pred CCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEEEEeeeccccCC
Confidence 0 1122222 23568999999999975321111234444444444332221111100 01
Q ss_pred ----cCChhhHHHHHHHHHH--cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHc
Q 009410 179 ----KWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIEL 251 (535)
Q Consensus 179 ----~~~~~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~ 251 (535)
....+..++..++.+. .+.+.+++++.+.....++.+.++++++.|++.|+++.+|+.+. .......+ ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~---~~ 244 (439)
T 2i9u_A 168 DYLTENYITSLNDTEEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKS---LH 244 (439)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HC
T ss_pred cccchhHHHHHHHHHHHHHHHhCCCCceEEEEecCCcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHHHHHHH---Hh
Confidence 0111223334444432 23456777766655556789999999999999999999999653 33322221 11
Q ss_pred CCCCcccccccCChhhHHHHHHHHHHHHHhcC-CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcC
Q 009410 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (535)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (535)
+. ++.. +.. +......+ .++.+.|+..... +.++++++.|+.+..||...
T Consensus 245 ~~---------~~~~-----~~~-~~~~g~~~~~~~~i~H~~~~~~-~~~~~l~~~g~~~~~~p~~~------------- 295 (439)
T 2i9u_A 245 KK---------SNFY-----GEV-YDKFGLFGNTPTLMAHCIHSSK-EEINLIKRNNVTIVHCPTSN------------- 295 (439)
T ss_dssp TT---------CSSH-----HHH-HHHTTCSSSSCEEEEECCSCCH-HHHHHHHHTTCEEEECHHHH-------------
T ss_pred CC---------CCCH-----HHH-HHHcCCCCCCCeEEEEEecCCH-HHHHHHHHcCCEEEECccch-------------
Confidence 21 0101 111 11122233 5677899987766 78888999998887776531
Q ss_pred ccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH------hc
Q 009410 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV------ES 404 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~------~~ 404 (535)
+..+.. .+| ++.++++|+++++|||+.+.. ... ++. +..+...+++.. ..
T Consensus 296 ~~l~~~---~~~---------~~~~~~~Gv~~~lgtD~~~~~-~~~-----~~~------~~~~~~~~~~~~~~~~~~~~ 351 (439)
T 2i9u_A 296 FNLGSG---MMP---------VRKYLNLGINVVLGSDISAGH-TCS-----LFK------VIAYAIQNSKIKWQESGKKD 351 (439)
T ss_dssp HHTTCC---CCC---------HHHHHHTTCEEEECCCBTTBC-CSC-----HHH------HHHHHHHHHHHHHHHTTSCS
T ss_pred hhcccc---cCC---------HHHHHHCCCcEEEecCCCCCC-CcC-----HHH------HHHHHHHHhccccccccCCC
Confidence 111111 122 788999999999999986521 111 111 222222222222 23
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeE---eeEEEEEEEC
Q 009410 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV---KGKVEVTIAG 481 (535)
Q Consensus 405 ~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~---~~~v~~v~~~ 481 (535)
.++|++++|+++|.|||+++| ++|+|++||.|||||+|.++++.. ++.. ++|+.+..+ ..+|..||++
T Consensus 352 ~~ls~~~al~~~T~~~A~~lg---~~Gsl~~G~~ADlvvld~~~~~~~-~~~~-----~~~~~~~~~~~~~~~v~~v~v~ 422 (439)
T 2i9u_A 352 MFLSTSEAFYMATKKGGSFFG---KVGSFEEGYDFDALVINDSNLYPE-DYDL-----TERLERFIYLGDDRNIMKRYVC 422 (439)
T ss_dssp CCCCHHHHHHHHTHHHHTTTS---SCSSCSTTCBCCEEEECCTTSCGG-GSCH-----HHHHHHHHHHCCGGGEEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHhc---cCCccCCCCccCEEEEeCCCcccc-CCCc-----cCHHHHheecCCCCCeeEEEEC
Confidence 679999999999999999999 589999999999999998876544 1111 223322211 2389999999
Q ss_pred CEEEEECCe
Q 009410 482 GRVVWENDE 490 (535)
Q Consensus 482 Gr~V~~~~~ 490 (535)
|++||++++
T Consensus 423 G~~v~~~~~ 431 (439)
T 2i9u_A 423 GNEIFGPKF 431 (439)
T ss_dssp TEEEC----
T ss_pred CEEEeeCCC
Confidence 999998765
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=308.31 Aligned_cols=352 Identities=15% Similarity=0.102 Sum_probs=221.9
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC----------CC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~----------g~ 121 (535)
+.+++|+|++|+++... ++|+|+||||++|++....+ +.++||++|++|+|||||+|+|+..... +.
T Consensus 4 ~~~~li~n~~v~~~~~~--~~v~I~~g~I~~vg~~~~~~-~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~g~ 80 (403)
T 2qt3_A 4 DFDLIIRNAYLSEKDSV--YDIGIVGDRIIKIEAKIEGT-VKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFWSR 80 (403)
T ss_dssp CEEEEEEEEEETTTTEE--EEEEEETTEEEEEESSCCSC-EEEEEECTTCBEEECEEEEEECGGGTTTTCSSSSCTTCSS
T ss_pred ccceEEEeeEecCCCee--EEEEEECCEEEEeecCCCCC-ccceEcCCCCEecccceeeeeccchhhcccccccccccCC
Confidence 46799999999987643 89999999999999865433 4689999999999999999999986531 11
Q ss_pred C-----------------chhhhHH----HHHHHHhCCcEEEeccccCCCCC---hHHHHHHHHHHhcccccccceee-e
Q 009410 122 E-----------------TIDDFFS----GQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAKNSCMDYGFHM-A 176 (535)
Q Consensus 122 ~-----------------~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~ 176 (535)
. ++++++. ....++++||||++++....... ....+....+.. +......... .
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 159 (403)
T 2qt3_A 81 PYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTKAVEAVLEAKEEL-KDLIDIQVVAFA 159 (403)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTTTTHHHHHHHHHHHHH-TTTCEEEEEEEC
T ss_pred CcccCcCHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCccccchHHHHHHHHHHh-hcceeEEEEEcC
Confidence 0 1122222 35667899999998764432211 111111111111 1111111100 0
Q ss_pred --eecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCC
Q 009410 177 --ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGI 253 (535)
Q Consensus 177 --~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~ 253 (535)
......+..+.++++. ..|.+.++.+ .++.....+++.++++++.|+++|+++.+|+..... ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~-~p~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~--------- 228 (403)
T 2qt3_A 160 QSGFFVDLESESLIRKSL-DMGCDLVGGV-DPATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVGVYS--------- 228 (403)
T ss_dssp TTCTTTSTTHHHHHHHHH-HTTCSEEECB-CTTTTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHH---------
T ss_pred CcccccCcchHHHHHHHH-hcCCCeEEEe-cCCCCCCChHHHHHHHHHHHHHcCCCeEEEeCCcccchhHH---------
Confidence 0011223344455544 5666666532 333334556799999999999999999999965532 1111
Q ss_pred CCcccccccCChhhHHHHHHHHHHHHHhcC--CCEEEEEccCHHH------HHHHHHHHHcCCcEEeccccceEeeCccc
Q 009410 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSW 325 (535)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~~~~------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 325 (535)
+..+++.+...+ .++.+.|+...+. .+.++++++.|+.++.+|...
T Consensus 229 ------------------~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~~~-------- 282 (403)
T 2qt3_A 229 ------------------INRLAQKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSST-------- 282 (403)
T ss_dssp ------------------HHHHHHHHHHTTCTTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEEEEETTTC--------
T ss_pred ------------------HHHHHHHHHHcCCCCCeEEEehhhhccCChhhHHHHHHHHHHcCCEEEECCCCC--------
Confidence 122233333333 3678999987653 268899999999998887420
Q ss_pred ccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-c
Q 009410 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-S 404 (535)
Q Consensus 326 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~ 404 (535)
.. ..++++++++|+++++|||+...... ++.. . .+...+.... .... .
T Consensus 283 ---------~~------------~~~~~~~~~~Gv~v~lgtD~~~~~~~-------~~g~-~-~~~~~~~~~~-~~~~~~ 331 (403)
T 2qt3_A 283 ---------PP------------TMPVIKLLEAGINLGCASDNIRDFWV-------PFGN-G-DMVQGALIET-QRLELK 331 (403)
T ss_dssp ---------CT------------TCCHHHHHHTTCEEEEECCSCSSSSC-------SCCC-C-CHHHHHHHHH-HHTTCC
T ss_pred ---------CC------------CCCHHHHHHcCCcEEEeCCCCCCCCC-------CCCC-C-CHHHHHHHHH-HHhCcC
Confidence 00 02278899999999999997521110 0000 0 1111111111 0001 1
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEE
Q 009410 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 484 (535)
Q Consensus 405 ~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~ 484 (535)
.+++++++|+++|.|||+++|+++ .|+|++||.|||||+|.+++.. +.....+|..||++|++
T Consensus 332 ~~~~~~~al~~~T~~~A~~lg~~~-~g~i~~G~~ADlvv~d~~~~~~----------------~~~~~~~v~~v~v~G~~ 394 (403)
T 2qt3_A 332 TNRDLGLIWKMITSEGARVLGIEK-NYGIEVGKKADLVVLNSLSPQW----------------AIIDQAKRLCVIKNGRI 394 (403)
T ss_dssp SHHHHHHHHHHTTHHHHHHHTCGG-GCSSSTTSBCCEEEESSSSHHH----------------HHHHCCCEEEEEETTEE
T ss_pred CccCHHHHHHHHHHHHHHhcCCCc-ccCCCCCCcCCEEEEcCCChHH----------------HhhcCCCccEEEECCEE
Confidence 126889999999999999999965 4999999999999999875321 11113479999999999
Q ss_pred EEECCeec
Q 009410 485 VWENDELN 492 (535)
Q Consensus 485 V~~~~~~~ 492 (535)
|+++|+++
T Consensus 395 v~~~g~~~ 402 (403)
T 2qt3_A 395 IVKDEVIV 402 (403)
T ss_dssp EEESSSBC
T ss_pred EecCCccc
Confidence 99999876
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=323.03 Aligned_cols=365 Identities=18% Similarity=0.180 Sum_probs=227.4
Q ss_pred cccEEEEccEEEcCCC--c-eeeeEEE-eCCEEEEeeC--CCCCCCCceEEecCCCEEeecccccccccccccCCCC---
Q 009410 52 SSKILIKGGTVVNAHH--Q-QIADVYV-EDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE--- 122 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~-~~~~I~I-~~G~I~~Vg~--~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~--- 122 (535)
..+++|+|++|+++++ . .+++|+| +||||++|++ ....+.+.++||++|++|+|||||+|+|+........
T Consensus 12 ~~~~li~n~~i~~~~~~~~~~~~~v~I~~~g~I~~Vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 91 (458)
T 2p9b_A 12 EPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPLNPKL 91 (458)
T ss_dssp CCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEEECEEEEEECSCC---------
T ss_pred CCcEEEEeeEEEeCCCCccccCcEEEEecCCEEEEEeccccCCCCCCCeEEECCCCEEccceeeeeeccccccccccccc
Confidence 4679999999999874 2 4689999 9999999997 4433446789999999999999999999986621100
Q ss_pred ------------ch---------hhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc----ccccccceee--
Q 009410 123 ------------TI---------DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDYGFHM-- 175 (535)
Q Consensus 123 ------------~~---------~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-- 175 (535)
.. ..+......++++||||++|+..... ....++...+.+. +......+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~g~~~g~r~~~~g~~~~~~ 169 (458)
T 2p9b_A 92 ATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGY--EVVTLRDQIDAGQILGPRILASGPLMAIP 169 (458)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSS--HHHHHHHHHHTTSSCCCEEECCCSCEECC
T ss_pred cchhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCcc--ccHHHHHHHHcCCCCCCeEEecccccccC
Confidence 00 12334567789999999999854322 2223333333222 1111111000
Q ss_pred ee--------ecCC-hhhHHHHHHHHHHcCCCEEEEEeec----------CCCCcCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009410 176 AI--------TKWD-EVVSDEMEVMVKEKGINSFKFFMAY----------KGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (535)
Q Consensus 176 ~~--------~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~----------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 236 (535)
+. .... ++..+.+++.. +.|.+.+|++.+. .+.+.++.+.++++++.|+++|+++.+|+.
T Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 248 (458)
T 2p9b_A 170 EGHGAPLIALTSGTPEEARTAVAQNL-KAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQ 248 (458)
T ss_dssp CSSCCCCEECCSCCHHHHHHHHHHHH-HTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCccccCccCCCHHHHHHHHHHHH-HcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 00 0011 22333444444 5688899998752 123456889999999999999999999998
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHH------HcCCcE
Q 009410 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR------KAGQRV 310 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~------~~g~~v 310 (535)
+...+...+ +. +.. .+.|+..... +.+++++ +.|+.+
T Consensus 249 ~~~~i~~~~----~~-------------------------------G~~-~i~H~~~~~~-~~~~~~~~~~~~~~~g~~v 291 (458)
T 2p9b_A 249 SPEGVRRSL----LA-------------------------------GVD-TIEHGSVLDD-ELIGMFRHNPNALRGYSAL 291 (458)
T ss_dssp SHHHHHHHH----HH-------------------------------TCS-EEEECCCCCH-HHHHHHHCCTTSTTSCCEE
T ss_pred CHHHHHHHH----Hc-------------------------------CCC-EEEECCCCCH-HHHHHHhcccccccCCeEE
Confidence 654332211 11 222 4678877665 7888888 888766
Q ss_pred Eeccccce--EeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc
Q 009410 311 IGEPVVSG--LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (535)
Q Consensus 311 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 388 (535)
.++..+.. ........ .+. ......++.+.......++.++++|+++++|||+.. ... ++.
T Consensus 292 ~p~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~-~~~-------~~~---- 354 (458)
T 2p9b_A 292 IPTLSAGLPLTLLGQDVT---GIT--DIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGM-TFV-------PQY---- 354 (458)
T ss_dssp ECCHHHHHHHHHSCHHHH---CCC--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTS-TTS-------CTT----
T ss_pred EeecchhhHHHhhhcccc---cCC--HHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCC-CCC-------ccc----
Confidence 43331111 10110000 000 000000111111223568889999999999999632 111 111
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCC
Q 009410 389 GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEG 468 (535)
Q Consensus 389 g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~ 468 (535)
.+... ++.+++..++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|+...+.
T Consensus 355 ~~~~e----~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~~~~~--------------- 415 (458)
T 2p9b_A 355 ATWRE----LELLVAYAGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLDDLR--------------- 415 (458)
T ss_dssp CHHHH----HHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGG---------------
T ss_pred cHHHH----HHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCchhCHH---------------
Confidence 11112 22233444799999999999999999999888999999999999999988542211
Q ss_pred eeEeeEEEEEEECCEEEEEC--Ceeccc
Q 009410 469 RRVKGKVEVTIAGGRVVWEN--DELNVV 494 (535)
Q Consensus 469 ~~~~~~v~~v~~~Gr~V~~~--~~~~~~ 494 (535)
...+|..||++|++|+++ +++...
T Consensus 416 --~~~~v~~v~v~G~~v~~~~~~~~~~~ 441 (458)
T 2p9b_A 416 --ALEHPALVIAAGHPVWRPGPKRFADI 441 (458)
T ss_dssp --GGTSCSEEEETTEECCSCCCCCCHHH
T ss_pred --HhccceEEEECCEEEecCchhhhhhH
Confidence 024788999999999987 666654
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=317.50 Aligned_cols=392 Identities=17% Similarity=0.204 Sum_probs=251.7
Q ss_pred ccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHH
Q 009410 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~ 130 (535)
++++|+|++|++++. ..+++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..... .. ..
T Consensus 21 ~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~--~~-----~~ 92 (496)
T 1rk6_A 21 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSPGFIDSHTHDDNYLL--KH-----RD 92 (496)
T ss_dssp BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEECEEESSCCCTTHHH--HC-----TT
T ss_pred ccEEEECCEEEeCCCCceeccEEEEECCEEEEecCCCC-CCCCeEEeCCCCEEecCEeeeeecCCcccc--cc-----HH
Confidence 479999999999865 368899999999999997542 345689999999999999999999876411 01 12
Q ss_pred HHHHHhCCcEEEecccc-----CCC--C-----------------ChHHHHHHHHHHhcccccccceeeee---------
Q 009410 131 QAAALAGGTTMHIDFVI-----PIN--G-----------------SLTAGFEAYEKKAKNSCMDYGFHMAI--------- 177 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~-----~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 177 (535)
...++++||||++++.. +.. . .....++... .+ ...+++.++.+.
T Consensus 93 ~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~-~~-~~~~~~~~~~g~~~~~~~~~~ 170 (496)
T 1rk6_A 93 MTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALR-AA-PPAVNAACMVGHSTLRAAVMP 170 (496)
T ss_dssp CHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHH-HS-CCSSEEEEEEEHHHHHHHHCS
T ss_pred HHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHh-cc-CCccceEEecccccceeeecc
Confidence 46789999999998742 110 0 1111122211 11 112222221110
Q ss_pred ---ecCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHc
Q 009410 178 ---TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251 (535)
Q Consensus 178 ---~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 251 (535)
.....+...+++.+.+ +.|+.+++....+......+.+.+.++++.+++++.++.+|++....
T Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~----------- 239 (496)
T 1rk6_A 171 DLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGE----------- 239 (496)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSST-----------
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEeeccccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeCCCcc-----------
Confidence 0012223344444432 56888887654332223457888999999999999999999975321
Q ss_pred CCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc---------CHHHHHHHHHHHHcCCcEEeccccceEeeC
Q 009410 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM---------SMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (535)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~---------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 322 (535)
.+.+.+.+.++++.+.+.++++.|+. .....+.++.+++.| .++++.++++.+..
T Consensus 240 ---------------~~~~~l~~~~~~a~~~g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g-~v~~~~~~~~~~~~ 303 (496)
T 1rk6_A 240 ---------------HIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQ-DVSLDAYPYVAGST 303 (496)
T ss_dssp ---------------THHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHS-CEEEEECSCSCEEE
T ss_pred ---------------cHHHHHHHHHHHHHHcCCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcC-CeEEEEeccCCCCC
Confidence 12345667777888889999999983 333345666666688 88887776655443
Q ss_pred cccccCcCccccceeEEcCCC--------------CCcccHHHHHHHHhcCC-----------------eEEEeCCCCCC
Q 009410 323 DSWLWHSDFVTAAKYVMSPPI--------------RASGHNKALQAALATGI-----------------LQLVGTDHCAF 371 (535)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~--------------r~~~~~~~~~~~l~~Gv-----------------~~~lgtD~~~~ 371 (535)
...+....-..+..+...|+. +......++++++++|+ ++++|||+.+.
T Consensus 304 ~~~~~~l~~~~~~~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~~~~v~~~~~~~~~~iGTD~~~~ 383 (496)
T 1rk6_A 304 MLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPH 383 (496)
T ss_dssp ECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTT
T ss_pred cccHHHhcCccceEEeccCCCcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCCHHHHHHHHcCCCEEEecCCCCC
Confidence 322221100001222222322 22334567778888887 58999998765
Q ss_pred ChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCce
Q 009410 372 NSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 450 (535)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~ 450 (535)
+.. ++. .....++..+..++. .+.+|++++++++|.|||++||++ ++|+|++|+.|||||+|.+++.
T Consensus 384 ~~~-------~~~----~~~~~~~~~l~~~v~~~~~l~~~~~l~~~T~~~A~~lgl~-~~G~i~~G~~ADlv~~d~~~~~ 451 (496)
T 1rk6_A 384 DER-------PHP----RLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLA-ERGQVQPGYYADLVVFDPATVA 451 (496)
T ss_dssp CSS-------CCT----HHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCT-TCSSCCTTSBCCEEEECTTTCB
T ss_pred CCC-------CCc----hhhccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCcccEEEEcCcccc
Confidence 311 111 112234444433333 345999999999999999999995 5899999999999999988753
Q ss_pred eeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecC
Q 009410 451 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 504 (535)
Q Consensus 451 ~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~ 504 (535)
..+ .+. +|+. ..+.|..||++|++|+++|+++..+ .|++++++
T Consensus 452 ~~~--~~~-----~~~~---~~~~v~~v~v~G~~v~~~g~~~~~~-~g~~l~~~ 494 (496)
T 1rk6_A 452 DSA--TFE-----HPTE---RAAGIHSVYVNGAAVWEDQSFTGQH-AGRVLNRA 494 (496)
T ss_dssp CCC--CSS-----STTC---CCBSEEEEEETTEEEEETTEECSCC-CCCBCCC-
T ss_pred ccc--ccc-----cccc---cCCCceEEEECCEEEEECCeeccCC-CceEeecC
Confidence 332 111 2222 2357999999999999999999876 58888753
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=304.58 Aligned_cols=348 Identities=17% Similarity=0.191 Sum_probs=224.2
Q ss_pred cccEEEEccEEEcCCC--c-eeeeEEEeCCEEEEeeCCCCCCCCc--eEEecCCCEEeecccccccccccccCCC-----
Q 009410 52 SSKILIKGGTVVNAHH--Q-QIADVYVEDGIVVAVQPNINVGDDV--KVLDATGKFVMPGGIDPHTHLAMEFMGS----- 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~-~~~~I~I~~G~I~~Vg~~~~~~~~~--~vID~~G~~vlPGlID~H~H~~~~~~g~----- 121 (535)
.++++|+|++|++++. . .+++|+|+||+|++|++.. .+.+. ++||++|++|+|||||+|+|+.......
T Consensus 6 ~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~-~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~ 84 (418)
T 2qs8_A 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPI 84 (418)
T ss_dssp -CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESC-CCCTTSSEEEEEEEEEEEECEEEEEECTTCCCCCTTTSCS
T ss_pred CccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCCC-CCCCCcceEEECCCCEECCCeeeeeeccccCCCCCchhhh
Confidence 4578999999999876 2 5789999999999999864 33456 8999999999999999999998652110
Q ss_pred -CchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc----cccccc------ceeee----------
Q 009410 122 -ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDY------GFHMA---------- 176 (535)
Q Consensus 122 -~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~---------- 176 (535)
.+++... .....++++||||++|+.... . ....++...+.+. +..... +.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~-~-~~~~~~~~~~~g~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (418)
T 2qs8_A 85 KVEREMQAILATQHAYVTFKSGFTTVRQVGDSG-L-VAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDY 162 (418)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSS-S-HHHHHHHHHHTTSSCCCEEEECCSCBEETTCTTCTTTTCCGGGC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCc-c-ccHHHHHHHHCCCCCCCeEEecCccccccCCCcccccccccccc
Confidence 1233221 246778999999999985332 1 2223333333321 111100 00000
Q ss_pred --------eecCChhhHHHHHHHHHHcCCCEEEEEeecC--------CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009410 177 --------ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK--------GSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (535)
Q Consensus 177 --------~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~--------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 240 (535)
.....++..+.+++.. ..|.+.+|++.+.. +....+.+.++++++.|+++|+++.+|+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 241 (418)
T 2qs8_A 163 DYPVPEQGVVNGPYEVYAAVRQRY-KDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAEG 241 (418)
T ss_dssp CCCCGGGTEECSHHHHHHHHHHHH-HHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred ccccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 0011122233333333 46889999987531 335678999999999999999999999986543
Q ss_pred HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEe
Q 009410 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (535)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 320 (535)
+...+ +. +.. .+.|+..... +.++++++.|+.+.++......+
T Consensus 242 i~~~~----~~-------------------------------g~~-~i~H~~~~~~-~~i~~l~~~gv~v~p~~~~~~~~ 284 (418)
T 2qs8_A 242 MKRAI----KA-------------------------------GVD-SIEHGTFMDL-EAMDLMIENGTYYVPTISAGEFV 284 (418)
T ss_dssp HHHHH----HH-------------------------------TCS-EEEECTTCCH-HHHHHHHHHTCEEECCHHHHHHH
T ss_pred HHHHH----Hc-------------------------------CCC-EEEECCCCCH-HHHHHHHHCCCEEeeeechHHHh
Confidence 32222 11 222 4788887765 78898988887643221110000
Q ss_pred eCcccccCcCccccceeEEcCCCCC-c-------ccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHH
Q 009410 321 LDDSWLWHSDFVTAAKYVMSPPIRA-S-------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEE 392 (535)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~-~-------~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (535)
. .. +. ....|+.+. . .....++.++++|+++++|||+... .... .+ .
T Consensus 285 ~-~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~~~~-~~~~-----~~--------~ 339 (418)
T 2qs8_A 285 A-EK---------SK-IDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGVQ-KHGT-----NW--------K 339 (418)
T ss_dssp H-HH---------TT-STTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBTTB-CTTC-----TT--------H
T ss_pred h-hh---------cc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCcC-Ccch-----HH--------H
Confidence 0 00 00 001122111 0 1135688999999999999996431 1110 11 1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEe
Q 009410 393 RMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVK 472 (535)
Q Consensus 393 ~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~ 472 (535)
.+.. +++. ++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|++..++ ..
T Consensus 340 e~~~----~~~~-gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~~-----------------~~ 397 (418)
T 2qs8_A 340 EFVY----MVEN-GMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPIEDIS-----------------VL 397 (418)
T ss_dssp HHHH----HHHT-TCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGG-----------------GG
T ss_pred HHHH----HHHc-CCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCChhhCHH-----------------Hh
Confidence 2222 2333 799999999999999999999888999999999999999988664332 13
Q ss_pred eEEEEEEECCEEEEE
Q 009410 473 GKVEVTIAGGRVVWE 487 (535)
Q Consensus 473 ~~v~~v~~~Gr~V~~ 487 (535)
.+|+.||++|+++..
T Consensus 398 ~~i~~v~~~G~~~~~ 412 (418)
T 2qs8_A 398 ENVDVVIKDGLLYEG 412 (418)
T ss_dssp GGEEEEEETTEEEEC
T ss_pred cCccEEEECCEEEec
Confidence 589999999999864
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=315.66 Aligned_cols=383 Identities=17% Similarity=0.142 Sum_probs=241.4
Q ss_pred cccEEEEccEEEcCCC-----ceeeeEEEeC-CEEEEeeCCCCC--------CCCceEEec-CCCEEeeccccccccccc
Q 009410 52 SSKILIKGGTVVNAHH-----QQIADVYVED-GIVVAVQPNINV--------GDDVKVLDA-TGKFVMPGGIDPHTHLAM 116 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~-----~~~~~I~I~~-G~I~~Vg~~~~~--------~~~~~vID~-~G~~vlPGlID~H~H~~~ 116 (535)
+.+++|+|..|.+... .++++|+|+| |||++|++.... ..+.++||+ +|++|+|||||+|+|+.+
T Consensus 30 ~~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~~ 109 (476)
T 4aql_A 30 PLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQ 109 (476)
T ss_dssp -CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGGG
T ss_pred CccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchHH
Confidence 4679999999987643 2689999998 999999986321 235789995 599999999999999865
Q ss_pred ccC-CCC--------------------chhh-----hHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccc
Q 009410 117 EFM-GSE--------------------TIDD-----FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170 (535)
Q Consensus 117 ~~~-g~~--------------------~~~~-----~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (535)
... |.. ..++ +.....+++++||||+.++...........++...+.+.+..+.
T Consensus 110 ~~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~r~~~~ 189 (476)
T 4aql_A 110 YSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVG 189 (476)
T ss_dssp GGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCCEEEEe
Confidence 421 110 1111 11123467899999999774332222333455556666554332
Q ss_pred cceeeee------ecCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hh
Q 009410 171 YGFHMAI------TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DA 240 (535)
Q Consensus 171 ~~~~~~~------~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~ 240 (535)
....... .....+..++..++.+ ..+...++..+.++..+.++++.++++++.|+++|+++.+|+.+. .+
T Consensus 190 ~~~~d~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~~~v~~~l~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e 269 (476)
T 4aql_A 190 KVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDE 269 (476)
T ss_dssp CEECSCCSSCTTSCCCHHHHHHHHHHHHHHHHHHTCSSEEECBEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSHHH
T ss_pred eccccCCCCCcccccCHHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCceEEEecCCHHH
Confidence 2211110 1111223333333332 234567888888888888999999999999999999999998554 33
Q ss_pred HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEe
Q 009410 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (535)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 320 (535)
.....+. .+... ...+.++.....+.++.+.|+...++ ++++++++.|+.+..||..+
T Consensus 270 ~~~~~~~---~~~~~---------------~~~~~~~~~g~l~~~~~~~H~~~l~~-~~~~~l~~~g~~v~~~P~sn--- 327 (476)
T 4aql_A 270 VEAVKNL---YPSYK---------------NYTSVYDKNNLLTNKTVMAHGCYLSA-EELNVFHERGASIAHCPNSN--- 327 (476)
T ss_dssp HHHHHHH---CTTSS---------------SHHHHHHTTTCCSTTEEEEECTTCCH-HHHHHHHHHTCEEEECHHHH---
T ss_pred HHHHHHH---hCCCC---------------CHHHHHHHcCCCCCCEEEEeCCCCCH-HHHHHHHHcCCEEEECchhh---
Confidence 3322221 11100 01112222233456788999998877 78999999999999998752
Q ss_pred eCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHH
Q 009410 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDT 400 (535)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~ 400 (535)
+..+... .++++++++|+++++|||+.+..... .+. +++....+.+
T Consensus 328 ----------~~l~~g~------------~p~~~~~~~Gv~v~lGtD~~~~~~~~------~~~------~~~~a~~~~~ 373 (476)
T 4aql_A 328 ----------LSLSSGF------------LNVLEVLKHEVKIGLGTDVAGGYSYS------MLD------AIRRAVMVSN 373 (476)
T ss_dssp ----------HHTTCCC------------CCHHHHHHTTCEEEECCCTTTSSCCC------HHH------HHHHHHHHHH
T ss_pred ----------hhhCcch------------HHHHHHHHCCCcEEEeCCCCCCCCCC------HHH------HHHHHHHHHh
Confidence 2122221 12889999999999999975422111 111 2222222222
Q ss_pred HH-----hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCce---eeecCCccccCCCCCCCCeeE-
Q 009410 401 MV-----ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF---EITARSHHSRLDTNVYEGRRV- 471 (535)
Q Consensus 401 ~~-----~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~---~i~~~~~~~~~~~~p~~~~~~- 471 (535)
.. ...+++++++|+++|.|||+++|+++++|+|++||.|||||+|.+.+. ......+.+...+.|+++..+
T Consensus 374 ~~~~~~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~ 453 (476)
T 4aql_A 374 ILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYL 453 (476)
T ss_dssp HHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHH
T ss_pred hhhcccCCCCcCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEEcCCCCCCccccccccccCCchhcHHHHHhhc
Confidence 22 135799999999999999999999888999999999999999988432 110000000011223332221
Q ss_pred --eeEEEEEEECCEEEEECCe
Q 009410 472 --KGKVEVTIAGGRVVWENDE 490 (535)
Q Consensus 472 --~~~v~~v~~~Gr~V~~~~~ 490 (535)
..+|+.||++||+||+.+.
T Consensus 454 ~~~~~V~~v~v~G~~v~~~~~ 474 (476)
T 4aql_A 454 GDDRNIEEVYVGGKQVVPFSS 474 (476)
T ss_dssp CCGGGEEEEEETTEEEECCC-
T ss_pred CCCCCccEEEECCEEEecCCC
Confidence 2369999999999998643
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=312.13 Aligned_cols=353 Identities=17% Similarity=0.148 Sum_probs=220.4
Q ss_pred cCcccEEEEccEEEcCCC---ceeeeEEEe-CCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchh
Q 009410 50 QSSSKILIKGGTVVNAHH---QQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (535)
Q Consensus 50 ~~~~~~vi~n~~vi~~~~---~~~~~I~I~-~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~ 125 (535)
.|+++++|+|++|++++. ..+++|+|+ ||||++|++....+.+.++||++|++|+|||||+|+|+... +.....
T Consensus 12 ~~~~~~li~n~~vv~~~~~~~~~~~~v~I~~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~ 89 (417)
T 2ogj_A 12 PLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHG--GTDISI 89 (417)
T ss_dssp --CCCEEEEEEEECSSCTTCCCSCEEEEECTTSBEEEEETTCCCSSCEEECCC--CEEEECEEEEEECCCBT--TBSSCC
T ss_pred cCCCcEEEECCEEEcCCCCccCccceEEEecCCEEEEeccCCCCCCCCeEEECCCCEEccCeeecccccccc--ccccCC
Confidence 345689999999999765 368899999 99999999764433356899999999999999999999875 221111
Q ss_pred hhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc---cccccc---ceeee--eecCC---hhhHHHHHHHHHH
Q 009410 126 DFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK---NSCMDY---GFHMA--ITKWD---EVVSDEMEVMVKE 194 (535)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~--~~~~~---~~~~~~~~~~~~~ 194 (535)
. ....++++||||++|+............+...+... ..++++ +.... ..... ....+.++++.+.
T Consensus 90 ~---~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~~~~~~~ 166 (417)
T 2ogj_A 90 R---PSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAE 166 (417)
T ss_dssp C---GGGTSGGGTEEEEEEESSCCSTTHHHHHHHTTTTCSSEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHHHHHHHT
T ss_pred C---HHHHHHhCCcCeEEeCCcCCCcCHHHHHHHHhhccccCeEEEeccccCcCCCCCCcccccchhhcCHHHHHHHHHh
Confidence 1 123568999999999864333222222221221111 111111 11100 00000 0123445555532
Q ss_pred --cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 195 --KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 195 --~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
.+..++|+++.+......+.+.++++++.|++.|+++.+|+..... ..+....+
T Consensus 167 ~~~~~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~l----------------------- 223 (417)
T 2ogj_A 167 NSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEIL----------------------- 223 (417)
T ss_dssp CTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHHHTCCEEEEECSSSSCHHHHHHHC-----------------------
T ss_pred CCCceEEEEEEecCCccccccHHHHHHHHHHHHHcCCcEEEEcCCCcccHHHHHHHh-----------------------
Confidence 2345678876643223457788899999999999999999964321 11111110
Q ss_pred HHHHHHHHHhcCCCEEEEEccC----------HHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcC
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMS----------MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~----------~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (535)
+....+.|+.. ....+.+..+++.|+.+..++...
T Consensus 224 -----------~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v~~~~~~~------------------------ 268 (417)
T 2ogj_A 224 -----------GPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGA------------------------ 268 (417)
T ss_dssp -----------CTTCEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEEECCBCSS------------------------
T ss_pred -----------cCCCEEEeccCCCccchhccCHHHHHHHHHHHhcCcEEEecCCCc------------------------
Confidence 11124556543 222356666777786654433210
Q ss_pred CCCCcccHHHHHHHHhcC-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHH
Q 009410 342 PIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTEC 420 (535)
Q Consensus 342 ~~r~~~~~~~~~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~ 420 (535)
......++.++++| +++++|||+. .+... .+.. .+...++.+++ .+++++++++++|.||
T Consensus 269 ----~~~~~~~~~~~~~G~~~~~lgtD~~-~~~~~-----g~~~--------~l~~~~~~~~~-~~l~~~~al~~~T~n~ 329 (417)
T 2ogj_A 269 ----SFSFKVAEAAIARGLLPFSISTDLH-GHSMN-----FPVW--------DLATTMSKLLS-VDMPFENVVEAVTRNP 329 (417)
T ss_dssp ----SCCHHHHHHHHHTTCCCSBCCBCBS-TTTTT-----TTCC--------CHHHHHHHHHH-TTCCHHHHHHTTTHHH
T ss_pred ----cccchHHHHHHHcCCCceEEEcCCC-CCccC-----CChh--------HHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 01235688999999 9999999976 43110 0111 23333433444 5699999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEee----EEEEEEECCEEEEECCeecccC
Q 009410 421 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 421 A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~----~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
|++||+++ +|+|++||.|||||+|.+.++.. +.++.+..+.+ +|..||++|++||++++++...
T Consensus 330 A~~lgl~~-~G~l~~G~~ADlvv~d~~~~~~~----------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~~~~~ 397 (417)
T 2ogj_A 330 ASVIRLDM-ENRLDVGQRADFTVFDLVDADLE----------ATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPRAR 397 (417)
T ss_dssp HHHTTCCC-SSTTSTTSBCEEEEEEEEEEEEE----------EECTTSCEEEEEEEEEEEEEEETTEEEECCCCCCCC-
T ss_pred HHHhCCCC-CCccCCCCcccEEEEecccCCce----------ecCCCCceEecccccceEEEEECCEEEEeCCccchHH
Confidence 99999976 99999999999999997654321 23566666555 8999999999999999988753
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=301.61 Aligned_cols=348 Identities=16% Similarity=0.174 Sum_probs=214.4
Q ss_pred ccEEEEc-cEEEcCCC--------------ceeeeEEEeCCEEEEeeCCC-C--CCCCceEEecCCCEEeeccccccccc
Q 009410 53 SKILIKG-GTVVNAHH--------------QQIADVYVEDGIVVAVQPNI-N--VGDDVKVLDATGKFVMPGGIDPHTHL 114 (535)
Q Consensus 53 ~~~vi~n-~~vi~~~~--------------~~~~~I~I~~G~I~~Vg~~~-~--~~~~~~vID~~G~~vlPGlID~H~H~ 114 (535)
++++|+| ++|+|+++ .++++|+|+||||++||+.. . .+ ..++||++|++|+|||||+|+|+
T Consensus 5 ~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~-~~~viD~~G~~v~PGfID~H~H~ 83 (421)
T 2bb0_A 5 IDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYE-ADEIIDCSGRLVTPGLVDPHTHL 83 (421)
T ss_dssp EEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTTTTTCE-EEEEEECTTCEEEECEEECCBCC
T ss_pred ccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEecccccccCC-CCeEEeCCCCEeccCeeccCcCc
Confidence 5799999 99998653 25789999999999999764 2 22 36899999999999999999998
Q ss_pred ccccC----------C---------------------CCchhhhHH----HHHHHHhCCcEEEeccccCCCC--ChHHHH
Q 009410 115 AMEFM----------G---------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGF 157 (535)
Q Consensus 115 ~~~~~----------g---------------------~~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~~--~~~~~~ 157 (535)
..... + ..+++.+.. ....++++||||+.++...... .....+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~ 163 (421)
T 2bb0_A 84 VFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQL 163 (421)
T ss_dssp CCCSCCGGGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSHHHHHHHH
T ss_pred cccccchHHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEeccccCcCccchHHHH
Confidence 65410 0 011122222 2356789999999986322111 112233
Q ss_pred HHHHHHhcccccccce-eeee---e-cCC---hhhHHHHH----HHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHH
Q 009410 158 EAYEKKAKNSCMDYGF-HMAI---T-KWD---EVVSDEME----VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (535)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~~---~-~~~---~~~~~~~~----~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~ 225 (535)
+...+........+.. ..+. . ... .+..+.+. .+......+.++.+. +....+.+.++++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~l~~~~~~a~ 240 (421)
T 2bb0_A 164 RVAKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFT---ETGVFTVSQSRRYLQKAA 240 (421)
T ss_dssp HHHHHHHHHSSSEEEEEEEEESSCCGGGTTCHHHHHHHHHTTHHHHHHTTCCSEEEEBB---CTTSBCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEeeccccCChhhcccHHHHHHHHHHhhHHhhccCccccccccC---CcCCCCHHHHHHHHHHHH
Confidence 3333322211111111 0000 0 000 11111111 111112344554432 223458999999999999
Q ss_pred hcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHH
Q 009410 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (535)
Q Consensus 226 ~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~ 305 (535)
++|+++.+|+....... .. +.....+.. .+.|+...+. ++++++++
T Consensus 241 ~~g~~v~~H~~~~~~~~-~~-------------------------------~~~~~~g~~-~~~H~~~~~~-~~i~~~~~ 286 (421)
T 2bb0_A 241 EAGFGLKIHADEIDPLG-GA-------------------------------ELAGKLKAV-SADHLVGTSD-EGIKKLAE 286 (421)
T ss_dssp HTTCEEEEEECSSSCCS-HH-------------------------------HHHHHTTCS-EEEECTTCCH-HHHHHHHH
T ss_pred HCCCCEEEEeccccccC-HH-------------------------------HHHHHcCCc-EEhhhhcCCH-HHHHHHHH
Confidence 99999999985321100 00 111122322 4789988877 88999999
Q ss_pred cCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCccc
Q 009410 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385 (535)
Q Consensus 306 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~ 385 (535)
.|+.++.+|...+. ++ +... .+++.++++|+++++|||+.+... +..
T Consensus 287 ~g~~~~~~p~~~~~-----------l~-~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~--------~~~- 333 (421)
T 2bb0_A 287 AGTIAVLLPGTTFY-----------LG-KSTY------------ARARAMIDEGVCVSLATDFNPGSS--------PTE- 333 (421)
T ss_dssp HTCEEEECHHHHHH-----------TT-CCCC------------CCHHHHHHTTCCEEECCCBBTTTB--------CCC-
T ss_pred cCCeEEECCchhhh-----------hc-cccc------------chHHHHHHCCCeEEEeCCCCCCCC--------ccc-
Confidence 99888887753211 00 0010 127889999999999999754211 010
Q ss_pred CcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCC
Q 009410 386 IPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV 465 (535)
Q Consensus 386 ~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p 465 (535)
.+...++..+...++|+++||+++|.|||+++|+++++|+|++||+|||||+|.|++..+..
T Consensus 334 -------~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~~~~~~~----------- 395 (421)
T 2bb0_A 334 -------NIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIPY----------- 395 (421)
T ss_dssp -------CHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEESSSSTTHHHH-----------
T ss_pred -------CHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEEECCcccccCHh-----------
Confidence 11112223344567999999999999999999998889999999999999999876533211
Q ss_pred CCCeeEeeEEEEEEECCEEEEEC-Ceec
Q 009410 466 YEGRRVKGKVEVTIAGGRVVWEN-DELN 492 (535)
Q Consensus 466 ~~~~~~~~~v~~v~~~Gr~V~~~-~~~~ 492 (535)
... ..+|..||++|++||++ |+++
T Consensus 396 -~~~--~~~v~~t~v~G~~v~~~~g~~~ 420 (421)
T 2bb0_A 396 -HYG--VNHVHQVMKNGTIVVNREGAIL 420 (421)
T ss_dssp -SCS--SCCEEEEEETTEEEEEC-----
T ss_pred -HcC--CCceEEEEECCEEEEeCCcccc
Confidence 000 13799999999999986 6654
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=306.74 Aligned_cols=382 Identities=18% Similarity=0.250 Sum_probs=231.4
Q ss_pred cccEEEEccEEE-cCCC----ceeeeEEEeCCEEEEeeCCCCCC-CCceEEecCCCEEeecccccccccccccC-CC---
Q 009410 52 SSKILIKGGTVV-NAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--- 121 (535)
Q Consensus 52 ~~~~vi~n~~vi-~~~~----~~~~~I~I~~G~I~~Vg~~~~~~-~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~--- 121 (535)
+.+++|+|++|+ |+++ .++++|+|+||||++||+..+.+ .+.++||++|++|+|||||+|+|+.+... +.
T Consensus 28 p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~~~~~~~vIDa~G~~v~PG~ID~H~H~~~~~~~g~~~~ 107 (479)
T 3hpa_A 28 PKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAA 107 (479)
T ss_dssp -CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGSCSCCSEEEECTTEEEEECEEECCCCGGGGGSCSCTTT
T ss_pred CCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccCCCCCCeEEECCCCEEeeCceeHhhCcchhcccccccC
Confidence 568999999966 4443 26899999999999999876544 45789999999999999999999865421 00
Q ss_pred ------------------Cchhhh----HHHHHHHHhCCcEEEeccccCCCC--ChHHHHHHHHHHhcccccccceee--
Q 009410 122 ------------------ETIDDF----FSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHM-- 175 (535)
Q Consensus 122 ------------------~~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (535)
...+.. ......++..|+|++.+....... ............+.+.........
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (479)
T 3hpa_A 108 QNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVG 187 (479)
T ss_dssp TTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHHHHHHHHHTCEEEEEEEECC--
T ss_pred CCcchHHHHhhhhhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchhhHHHHHHHHHHhcchhhhhhheeecc
Confidence 011111 123445678999999987543332 344444444444433211111100
Q ss_pred ---e------eecCChhhHHHHHHHHHH---cC-CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHH
Q 009410 176 ---A------ITKWDEVVSDEMEVMVKE---KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF 242 (535)
Q Consensus 176 ---~------~~~~~~~~~~~~~~~~~~---~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 242 (535)
. ......+.......+... .+ ................+.+.+.++...|.+.|..+..|.......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~- 266 (479)
T 3hpa_A 188 QRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVND- 266 (479)
T ss_dssp --------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEESCTTTSCHHHHHHHHHHHHHHTCEEEEEESCSHHH-
T ss_pred ccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeEecccccccCCHHHHHHHHHHHHhcCCeEEeecccchHH-
Confidence 0 000111122222222211 11 122333344455567789999999999999999999998544221
Q ss_pred HHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeC
Q 009410 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (535)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~ 322 (535)
........|.. ...........+.+..+.|+..... ...+.+++.+..+..++.....
T Consensus 267 -~~~~~~~~g~~-----------------~~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~p~~~~~--- 324 (479)
T 3hpa_A 267 -IAYSREKFGMT-----------------PAEYAEDLGWVGHDVWHAHCVQLDD-AGIGLFARTGTGVAHCPCSNMR--- 324 (479)
T ss_dssp -HHC-------C-----------------HHHHHHHTTCCSTTEEEEECTTCCH-HHHHHHHHHTCEEEECHHHHHH---
T ss_pred -HHHHHHHcCCc-----------------hHHHHhhhccccccceeeeeEecch-hHHHHHHhcCCceeeccccccc---
Confidence 11111111110 0111112233456778899887766 6677778888777766543111
Q ss_pred cccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHH-HHH
Q 009410 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVW-DTM 401 (535)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-~~~ 401 (535)
.+... .....+.+.|+++++|||+......... ..+......+ ...
T Consensus 325 ----------~~~~~------------~~~~~~~~~~~~v~~gtD~~~~~~~~~~-----------~~~~~~~~~~~~~~ 371 (479)
T 3hpa_A 325 ----------LASGI------------APVKKMRLAGVPVGLGVDGSASNDGAQM-----------VAEVRQALLLQRVG 371 (479)
T ss_dssp ----------TTCCC------------CCHHHHHHHTCCEEECCCCTTSSCCCCH-----------HHHHHHHHHHHHHH
T ss_pred ----------cccCc------------cchhHHHhcCCcEEeeccccccCCCccH-----------HHHHHHHHHHHhhh
Confidence 11111 1167778889999999997654322110 1122222222 222
Q ss_pred HhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEEC
Q 009410 402 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAG 481 (535)
Q Consensus 402 ~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~ 481 (535)
....++|++++|+++|.|||++||++ ++|+|++||+|||||||.+.++...+. .++.....|.+ .++|.+|||+
T Consensus 372 ~~~~~ls~~eal~~~T~~~A~~lgl~-~~G~I~~G~~ADlvv~D~~~~~~~~~~--~dp~~~lv~~~---~~~v~~tiV~ 445 (479)
T 3hpa_A 372 FGPDAMTAREALEIATLGGAKVLNRD-DIGALKPGMAADFAAFDLRQPLFAGAL--HDPVAALVFCA---PSQTAYTVVN 445 (479)
T ss_dssp HCTTSCCHHHHHHHTTHHHHHHHTCS-SSSSCSTTSBCCEEEEETTSGGGTTCT--TSHHHHHHHSS---CCCCSEEEET
T ss_pred ccccCCCHHHHHHHHHHHHHHHhCCC-CCccCCCCCcCCEEEEcCCCccccCCc--cCHHHHhhccC---CCCceEEEEC
Confidence 34567999999999999999999995 689999999999999999876554321 11111111222 3579999999
Q ss_pred CEEEEECCeecccC
Q 009410 482 GRVVWENDELNVVP 495 (535)
Q Consensus 482 Gr~V~~~~~~~~~~ 495 (535)
||+||+||+++..|
T Consensus 446 G~~V~~dG~~~~~D 459 (479)
T 3hpa_A 446 GKVVVREGRLATLD 459 (479)
T ss_dssp TEEEEETTEECSSC
T ss_pred CEEEEECCcCCCCC
Confidence 99999999999876
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=303.53 Aligned_cols=346 Identities=15% Similarity=0.129 Sum_probs=217.2
Q ss_pred ccEEEEccEEEcCCC-------ceeeeEEEeCCEEEEeeCCCCCCC--CceEEecCCCEEeecccccccccccccC----
Q 009410 53 SKILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFM---- 119 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~-------~~~~~I~I~~G~I~~Vg~~~~~~~--~~~vID~~G~~vlPGlID~H~H~~~~~~---- 119 (535)
++++|+|++|+|+++ ..+++|+|+||||++||+....+. +.++||++|++|+|||||+|+|+.....
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~ 84 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEE 84 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEEECEEEEEECCCCCSCCHHH
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhccccCCCeEEeCCCCEECCcccccccCcchhhhhHHH
Confidence 578999999998765 157899999999999998654333 4679999999999999999999876411
Q ss_pred ------C---------------------CCchhhhHHH----HHHHHhCCcEEEeccccCCCC--ChHHHHHHHHHHhcc
Q 009410 120 ------G---------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKN 166 (535)
Q Consensus 120 ------g---------------------~~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~ 166 (535)
+ ..+++.+... ...++++||||+.|+...... .....++...+....
T Consensus 85 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2q09_A 85 FELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEA 164 (416)
T ss_dssp HHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCcccChHhHHHHHHHHHHHHhh
Confidence 0 0122333222 366789999999997532211 112333333332221
Q ss_pred cccccce-eee---ee-cC---ChhhHHHH-----HHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEE
Q 009410 167 SCMDYGF-HMA---IT-KW---DEVVSDEM-----EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (535)
Q Consensus 167 ~~~~~~~-~~~---~~-~~---~~~~~~~~-----~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (535)
...++.. ..+ .. .. ..+..+.. ..+......+.++.+. +....+.+.+.++++.|++.|+++.+
T Consensus 165 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~g~~v~~ 241 (416)
T 2q09_A 165 LPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVFC---EHIGFSLAQTEQVYLAADQYGLAVKG 241 (416)
T ss_dssp SSSEEEEEEEEETSCCGGGTTCHHHHHHHHHHTHHHHHHHTTCCSEEEEBB---STTSBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEeeeccccCCccccCCHHHHHHHHHhhhhHHHHhccccccccccc---CCCcCCHHHHHHHHHHHHHCCCcEEE
Confidence 1111111 000 00 00 01111111 1111112345555432 23356899999999999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEec
Q 009410 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGE 313 (535)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~ 313 (535)
|+....... ..+. +...+.. .+.|+...+. +.++++++.|+.++.+
T Consensus 242 H~~~~~~~~-~~~~-------------------------------~~~~g~~-~~~H~~~~~~-~~~~~~~~~g~~~~~~ 287 (416)
T 2q09_A 242 HMDQLSNLG-GSTL-------------------------------AANFGAL-SVDHLEYLDP-EGIQALAHRGVVATLL 287 (416)
T ss_dssp EESSSCCCS-HHHH-------------------------------HHHTTCS-EEEECTTCCH-HHHHHHHHHTCEEEEC
T ss_pred EECCCCchH-HHHH-------------------------------HHHcCCC-EEeecccCCH-HHHHHHHHcCCeEEEc
Confidence 986432100 0111 1112322 4788887776 8899999999888877
Q ss_pred cccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHH
Q 009410 314 PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEER 393 (535)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~ 393 (535)
|...+.+ . +.. .+| ++.++++|+++++|||+.+.... .. .
T Consensus 288 p~~~~~~-----------~-~~~---~~~---------~~~~~~~Gv~~~~gtD~~~~~~~--------~~----~---- 327 (416)
T 2q09_A 288 PTAFYFL-----------K-ETK---LPP---------VVALRKAGVPMAVSSDINPGTAP--------IV----S---- 327 (416)
T ss_dssp HHHHHHT-----------T-CCC---CCC---------HHHHHHTTCCEEECCCCBTTTBC--------CC----C----
T ss_pred CccHHhh-----------c-ccc---ccC---------HHHHHHCCCeEEEecCCCCccCC--------CC----C----
Confidence 6532110 0 000 112 78899999999999997543111 00 0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEee
Q 009410 394 MHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG 473 (535)
Q Consensus 394 l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~ 473 (535)
+...++.++...++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|++..+ ++... ..
T Consensus 328 ~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~------------~~~~~--~~ 393 (416)
T 2q09_A 328 LRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWNCGHPAEL------------SYLIG--VD 393 (416)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSSCTTHH------------HHSCS--CC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEEECCCchhhh------------hhhhc--cC
Confidence 11112233334579999999999999999999988899999999999999998866432 22211 35
Q ss_pred EEEEEEECCEEEEECC
Q 009410 474 KVEVTIAGGRVVWEND 489 (535)
Q Consensus 474 ~v~~v~~~Gr~V~~~~ 489 (535)
+|..||++|++||+++
T Consensus 394 ~v~~v~v~G~~v~~~~ 409 (416)
T 2q09_A 394 QLVSRVVNGEETLHGE 409 (416)
T ss_dssp CEEEEEETTEECCC--
T ss_pred cceEEEECCEEEEeCC
Confidence 8999999999999874
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=306.10 Aligned_cols=354 Identities=16% Similarity=0.108 Sum_probs=221.8
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCC-CEEeecccccccccccccCCCCchhhhHHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G-~~vlPGlID~H~H~~~~~~g~~~~~~~~~~ 130 (535)
+++++|+|++|++++ .++|+|+||+|++|++... +.+.++||++| ++|+|||||+|+|+... +....+ ..
T Consensus 4 ~~~~~i~~~~v~~~~---~~~v~i~~g~I~~ig~~~~-~~~~~~iD~~g~~~v~PG~ID~H~H~~~~--~~~~~~---~~ 74 (379)
T 2ics_A 4 DYDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATIS-GSAKETIHLEPGTYVSAGWIDDHVHCFEK--MALYYD---YP 74 (379)
T ss_dssp CEEEEEEEEECTTSC---EEEEEEETTEEEEEESCCC-CCEEEEEECCTTCEEEECEEEEEECCCTT--SSSSCC---CH
T ss_pred cccEEEECCEEEcCC---cceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEEccCEEEeccccCcc--CccccC---ch
Confidence 357899999999864 7899999999999997543 23568999999 99999999999999875 222222 22
Q ss_pred HHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc--ccccccceeeeeec--C---ChhhHHHHHHHHHH--cCCCEEE
Q 009410 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDYGFHMAITK--W---DEVVSDEMEVMVKE--KGINSFK 201 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~--~g~~~ik 201 (535)
.+.++++||||++|+............+....... ..++++......+. . .....++++++.++ .+..++|
T Consensus 75 ~~~~~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 154 (379)
T 2ics_A 75 DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIK 154 (379)
T ss_dssp HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTSSGGGCCHHHHHHHHHHCTTTEEEEE
T ss_pred hhhHhhCceeEEEcCCCCCccCHHHHHHHHHhhcccEEEEccccccCCCCHHHHHHHHHHHHHHHHHHHHhhhCcceEEE
Confidence 46789999999999864323223233332222211 11222211111110 1 11124556665533 3677788
Q ss_pred EEeecCCCCcCCHHHHHHHHHHHHh-cCCeEEEEcCCh-hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 202 FFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
.+..+......+.+.++++++.|++ .|+++.+|+... ....+..+.+ +.| ....|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~~~~~~~~~-~~g--~~~~H~~------------------ 213 (379)
T 2ics_A 155 ARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALM-EKG--DVLTHCF------------------ 213 (379)
T ss_dssp EEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHC-CTT--CEEESTT------------------
T ss_pred EeccccccccchHHHHHHHHHHHHHhcCCeEEEeCCCCcchHHHHHHHh-hcC--Ceeeecc------------------
Confidence 8766432334677889999999999 999999999642 2222222211 112 1111100
Q ss_pred HhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC
Q 009410 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (535)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G 359 (535)
.+.+.++.|.+.....+.+..+++.|+.+..++... ......+++++++|
T Consensus 214 --~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~p~~~----------------------------~~~~~~~~~~~~~G 263 (379)
T 2ics_A 214 --NGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGTD----------------------------SFNFHVAETALREG 263 (379)
T ss_dssp --CCSTTSSEETTTTEECHHHHHHHHTTCEEECCCTTT----------------------------SCCHHHHHHHHHTT
T ss_pred --CCCccchhhccCHHHHHHHHHHHHcCCEEEecCCCC----------------------------CcCHHHHHHHHHcC
Confidence 011112233322222256667778887766543210 00225588899999
Q ss_pred -CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCC
Q 009410 360 -ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 438 (535)
Q Consensus 360 -v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ 438 (535)
++++++||+.+. . ... .+.. .+...+..+.+ .++|++++++++|.|||++||+++ +|+|++||+
T Consensus 264 ~~~~~l~TD~~~~--~-~~~--~~~~--------~~~~~l~~~~~-~~ls~~~~~~~~T~n~A~~lgl~~-~G~l~~G~~ 328 (379)
T 2ics_A 264 MKAASISTDIYIR--N-REN--GPVY--------DLATTMEKLRV-VGYDWPEIIEKVTKAPAENFHLTQ-KGTLEIGKD 328 (379)
T ss_dssp CCCSBCCCCBCHH--H-HHS--SSCC--------CHHHHHHHHHH-HTCCHHHHHHTTTHHHHHHTTCTT-SSSCCTTSB
T ss_pred CCcceEeccCccc--C-CCC--CcHh--------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCC-CcCCCCCCc
Confidence 889999996421 1 000 0111 22233333333 369999999999999999999965 899999999
Q ss_pred ccEEEEcCCCceeeecCCccccCCCCCCCCeeEee----EEEEEEECCEEEEECCe
Q 009410 439 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWENDE 490 (535)
Q Consensus 439 ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~----~v~~v~~~Gr~V~~~~~ 490 (535)
|||||+|.+.++.. ++++.|..+.+ +|..||++|++||++|.
T Consensus 329 ADlvv~d~~~~~~~----------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~ 374 (379)
T 2ics_A 329 ADLTIFTIQAEEKT----------LTDSNGLTRVAKEQIRPIKTIIGGQIYDNEGH 374 (379)
T ss_dssp CCEEEEEEEEEEEE----------EECTTSCEEEEEEEEEEEEEEETTEEEEC---
T ss_pred cCEEEEecccccce----------eecCCCCEEEeeeeeeeEEEEECCEEEecCCc
Confidence 99999987554322 45788888888 99999999999999985
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=307.32 Aligned_cols=368 Identities=17% Similarity=0.173 Sum_probs=224.7
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCC-CCceEEecCCCEEeecccccccccccccC-CC--------
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------- 121 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~-~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~-------- 121 (535)
+++++|+|++|++++ ..++|+|+||||++||+....+ .+.++||++|++|+|||||+|+|+..... +.
T Consensus 7 ~~~~li~n~~v~~~~--~~~~v~I~~g~I~~vg~~~~~~~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~ 84 (430)
T 1ra0_A 7 NALQTIINARLPGEE--GLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGT 84 (430)
T ss_dssp -CCCEEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESCEEEEEECTTTTTCTTSSSCCSSCC
T ss_pred CCcEEEEeeEecCCC--ceeEEEEECCEEEEeecCCCCCCCCcceEccCCCEecccccccccchhhhhhcCCCcCCCCCC
Confidence 467999999999976 6789999999999999865433 45789999999999999999999975421 11
Q ss_pred --------------CchhhhHHH----HHHHHhCCcEEEeccccCCCCChHHHHHHHHHHh--cccccccceeeeeec--
Q 009410 122 --------------ETIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA--KNSCMDYGFHMAITK-- 179 (535)
Q Consensus 122 --------------~~~~~~~~~----~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-- 179 (535)
.++++++.. ...++++||||++|+....... ...++...+.. .+..+.+.... ...
T Consensus 85 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 162 (430)
T 1ra0_A 85 LFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDAT-LTALKAMLEVKQEVAPWIDLQIVA-FPQEG 162 (430)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTT-CHHHHHHHHHHHHHTTTCEEEEEE-ECTTC
T ss_pred HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCChH-HHHHHHHHHHHHhhhhhEEEEEEe-cCCcc
Confidence 122333332 3445799999999986432211 11222222111 12222222111 110
Q ss_pred --CChhhHHHHHHHHHHcCCCEEEEEeecCCCCc--CCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCC
Q 009410 180 --WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGIT 254 (535)
Q Consensus 180 --~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~ 254 (535)
...+..+.++++. ..|.+.+... ...... .+.+.++++++.|+++|+++.+|+... ......++.
T Consensus 163 ~~~~~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~------- 232 (430)
T 1ra0_A 163 ILSYPNGEALLEEAL-RLGADVVGAI--PHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVET------- 232 (430)
T ss_dssp SSSSTTHHHHHHHHH-HTTCSEECCC--GGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHHHH-------
T ss_pred cccCchHHHHHHHHH-HhCCCeEeee--ecccccccccHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHH-------
Confidence 1223344466655 4555554332 222232 678899999999999999999999543 211111110
Q ss_pred CcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHH------HHHHHHHHcCCcEEeccccceEeeCcccccC
Q 009410 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM------EEIAKARKAGQRVIGEPVVSGLVLDDSWLWH 328 (535)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~------~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 328 (535)
.+..+.+.+ . +.++++.|+...+.. +.++++++.|+.++.||..+..+... .
T Consensus 233 ----------------~~~~~~~~g-~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~~~p~~~~~~~~~--~-- 290 (430)
T 1ra0_A 233 ----------------VAALAHHEG-M-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGR--F-- 290 (430)
T ss_dssp ----------------HHHHHHHHT-C-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECHHHHHHHTTT--T--
T ss_pred ----------------HHHHHHHhC-C-CCCEEEEeccccccCChHhHHHHHHHHHHcCCEEEECchhhhhhccc--c--
Confidence 011111221 1 456789998876542 38899999999988877532211100 0
Q ss_pred cCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCC
Q 009410 329 SDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQIS 408 (535)
Q Consensus 329 ~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls 408 (535)
...|+.+.. ..+++++++|+++++|||+.+.+..... ..+++. +..+...+..+ ..++|
T Consensus 291 ---------~~~p~~~~~---~~~~~~~~~Gv~~~lgTD~~~~~~~~~~-~~~~~~------~~~~~~~~~~~--~~~~~ 349 (430)
T 1ra0_A 291 ---------DTYPKRRGI---TRVKEMLESGINVCFGHDGVFDPWYPLG-TANMLQ------VLHMGLHVCQL--MGYGQ 349 (430)
T ss_dssp ---------CCSSCCCCC---CCHHHHHHTTCCEEECCBCSSBTTBSCC-CCCHHH------HHHHHHHHTTC--CSHHH
T ss_pred ---------CCCCCcCCC---CCHHHHHHCCCEEEEeCCCCcccCCCCC-CCCHHH------HHHHHHHHHcc--CCccc
Confidence 001221111 2378899999999999998631110000 000111 11221111100 12358
Q ss_pred HHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 409 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 409 ~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
++++|+++|.|||+++|+++ |+|++||.|||||+|.++++.. +. ...+|..||++|++||++
T Consensus 350 ~~~al~~~T~~~A~~lg~~~--G~i~~G~~ADlvv~d~~~~~~~----~~------------~~~~v~~v~~~G~~v~~~ 411 (430)
T 1ra0_A 350 INDGLNLITHHSARTLNLQD--YGIAAGNSANLIILPAENGFDA----LR------------RQVPVRYSVRGGKVIAST 411 (430)
T ss_dssp HHGGGGGGTHHHHHHTTCSS--CSSCTTSBCCEEEESSSSHHHH----HH------------HTCCCSEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCC--cccCCCCcCCEEEEcCCChhHH----Hh------------ccCcceEEEECCEEEecC
Confidence 99999999999999999964 9999999999999998765411 00 135799999999999999
Q ss_pred Ceeccc
Q 009410 489 DELNVV 494 (535)
Q Consensus 489 ~~~~~~ 494 (535)
++++..
T Consensus 412 ~~~~~~ 417 (430)
T 1ra0_A 412 QPAQTT 417 (430)
T ss_dssp CCCCEE
T ss_pred Ccceee
Confidence 988743
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=292.66 Aligned_cols=351 Identities=17% Similarity=0.154 Sum_probs=220.4
Q ss_pred ccEEEEccEE-EcCCC----ceeeeEEEeCCEEEEeeCCCC-CCCC-ceEEecCCCEEeecccccccccccccCCCCchh
Q 009410 53 SKILIKGGTV-VNAHH----QQIADVYVEDGIVVAVQPNIN-VGDD-VKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (535)
Q Consensus 53 ~~~vi~n~~v-i~~~~----~~~~~I~I~~G~I~~Vg~~~~-~~~~-~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~ 125 (535)
.+++|+|++| +++++ .++++|+|+||+|++|++... .+.+ .++||++|++|+|||||+|+|+... +.....
T Consensus 2 ~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~ 79 (386)
T 2vun_A 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHVSGG--DYAPRQ 79 (386)
T ss_dssp CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGTTCTTCEEEECTTCEEEECEEEEEECCCST--TEEGGG
T ss_pred ccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccCCCCCceEEcCCCCEEccceeeccccccCC--CcChhH
Confidence 4689999999 99864 257899999999999997322 1334 6899999999999999999999743 211000
Q ss_pred hhHHHHHHHHhCCcEEEecccc---CCCCChHHHHH------HHHHHhcccccccceeeeee-cCChhhHHHHHHHHHHc
Q 009410 126 DFFSGQAAALAGGTTMHIDFVI---PINGSLTAGFE------AYEKKAKNSCMDYGFHMAIT-KWDEVVSDEMEVMVKEK 195 (535)
Q Consensus 126 ~~~~~~~~~l~~GvTtv~d~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 195 (535)
........++++||||++|+.. +........++ .....+.+ .....+..+.. .......++++++. +.
T Consensus 80 ~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~-~~ 157 (386)
T 2vun_A 80 KTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNAR-PAGVKVHGGAVILEKGLTEEDFIEMK-KE 157 (386)
T ss_dssp TEESHHHHHHTTTEEEEEECCCTTSTTCCCSHHHHHHHHHHHHHHHHHCC-GGGCEEECCEECCCTTCCHHHHHHHH-HT
T ss_pred HHHHHHHHHHhCCceEEEeccccccCCChhhHHHHHHHHHHhhccccccc-ccceeeccCcccccCCcCHHHHHHHH-Hh
Confidence 1112578889999999999862 11111111222 11111111 00011111110 11111235666666 56
Q ss_pred CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHH
Q 009410 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (535)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 275 (535)
|.+.+|++... ...+++.++++++.|+++|+++.+|+.+..... .+. +.+..+
T Consensus 158 g~~~ik~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~--------~~~----------------~~i~~~ 210 (386)
T 2vun_A 158 GVWIVGEVGLG---TIKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPG--------SST----------------VTADDV 210 (386)
T ss_dssp TCCEEEEETSS---SCCSHHHHHHHHHHHHHTTCEEEEECSCCSCST--------TCS----------------CCHHHH
T ss_pred CCCeEEEeecC---CCCCHHHHHHHHHHHHHCCCeEEEecCCccccc--------cCH----------------HHHHHH
Confidence 88999987421 235899999999999999999999996321000 000 011122
Q ss_pred HHHHHhcCCCEEEEEccC----HHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHH
Q 009410 276 IRLAEFVNTPLYVVHVMS----MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (535)
Q Consensus 276 ~~~~~~~~~~~~~~H~~~----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (535)
+ +.+.+ .+.|+.. .+. +.++.+++.|+.+..++. +. . .......
T Consensus 211 ~----~~G~~-~i~H~~~~~~~~~~-~~~~~~~~~g~~vl~~~~------~g------------------~--~~~~~~~ 258 (386)
T 2vun_A 211 I----KTKPD-VVSHINGGPTAISV-QEVDRIMDETDFAMEIVQ------CG------------------N--PKIADYV 258 (386)
T ss_dssp H----HHCCS-EEETTTCSSSCCCH-HHHHHHHHHCCCEEEEES------SS------------------C--HHHHHHH
T ss_pred H----HcCCC-EEEEccCCCCCCCH-HHHHHHHHcCCeEEEecc------CC------------------c--ccccHHH
Confidence 2 23444 4789876 444 778888888987621110 00 0 1123366
Q ss_pred HHHHHhcCC--eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 352 LQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 352 ~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
++.++++|+ +++++||+. .... ..|.| .+...++.+. ..++|++++++++|.|||++||+ +
T Consensus 259 ~~~~~~~g~~d~v~lgTD~p-~~~~----------~~~~g---~~~~~~~~~~-~~~ls~~~~~~~~T~n~A~~lgl--~ 321 (386)
T 2vun_A 259 ARRAAEKGQLGRVIFGNDAP-SGTG----------LIPLG---ILRNMCQIAS-MSDIDPEVAVCMATGNSTAVYGL--N 321 (386)
T ss_dssp HHHHHHHTCGGGEEEECCBS-BTTB----------BCTTH---HHHHHHHHHH-HSCCCHHHHHHHHTHHHHHHHTC--S
T ss_pred HHHHHHcCCCceeEEecCCC-CCCC----------CCcch---hHHHHHHHHh-hcCCCHHHHHHHHhHHHHHHcCC--C
Confidence 899999999 999999973 1110 01111 1112222222 35799999999999999999999 5
Q ss_pred CccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeE--eeEEEEEEECCEEEEECCeecc
Q 009410 430 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV--KGKVEVTIAGGRVVWENDELNV 493 (535)
Q Consensus 430 ~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~--~~~v~~v~~~Gr~V~~~~~~~~ 493 (535)
+|+|++||.|||||+|.++. ....+ ++.+... ..+|+.||++|++|+++|+...
T Consensus 322 ~G~i~~G~~ADlvv~d~~~~-~~~~~---------~~~~~~~~~~~~v~~v~v~G~~v~~~~~~~~ 377 (386)
T 2vun_A 322 TGVIAPGKEADLIIMDTPLG-SVAED---------AMGAIAAGDIPGISVVLIDGEAVVTKSRNTP 377 (386)
T ss_dssp CSSCSTTSBCCEEEEECBTT-CSCSS---------HHHHHHHTCCCEEEEEEETTEEEESSCSSSC
T ss_pred ceeeCCCCeeCEEEECCCcc-cccch---------hHHHhhccCCCceeEEEECCEEEeecCcCCC
Confidence 89999999999999998763 21111 2221110 2489999999999999988666
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=310.99 Aligned_cols=354 Identities=18% Similarity=0.221 Sum_probs=216.5
Q ss_pred EEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C--C--------
Q 009410 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--S-------- 121 (535)
Q Consensus 55 ~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g--~-------- 121 (535)
++|+|++|+++++ ..+++|+|+||||++|++.. ++.+ ||++|++|+|||||+|+|+..... + .
T Consensus 1 ~li~n~~v~~~~~~~~~~~~v~I~~g~I~~vg~~~---~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 76 (406)
T 1p1m_A 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGE---VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWL 76 (406)
T ss_dssp CEEEEEEECCSTTSCCEEEEEEEETTEEEEEEESS---CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCSCCHHHHH
T ss_pred CEEEccEEEecCccccccceEEEECCEEEEeeCCC---Ccce-ecCCCcEEeecccchhhccchhhhccccCCCCHHHHH
Confidence 4799999998764 46899999999999999764 2456 999999999999999999976421 1 0
Q ss_pred ----------CchhhhHHHH----HHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChhhHHH
Q 009410 122 ----------ETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE 187 (535)
Q Consensus 122 ----------~~~~~~~~~~----~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (535)
.+++.+.... ..++++||||++|+... ....++.....+.+.....++.. ......+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~~~-~~~~~~~~~~~ 151 (406)
T 1p1m_A 77 FSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH----EEWIAKAVRDFGMRALLTRGLVD-SNGDDGGRLEE 151 (406)
T ss_dssp HTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS----HHHHHHHHHHHCCEEEEEEEECC-BTTBCTTHHHH
T ss_pred HhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhC----HHHHHHHHHHcCCEEEEEccccc-CCCCHHHHHHH
Confidence 1334443322 45689999999998532 23334443333333222111110 11112233333
Q ss_pred HHHHHHH-cCC-CEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccccCC
Q 009410 188 MEVMVKE-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRP 264 (535)
Q Consensus 188 ~~~~~~~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (535)
.....+. .+. +.+|+...+......+.+.+.++++.|++.|+++++|+. .........+.+ ..|.
T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~-~~g~----------- 219 (406)
T 1p1m_A 152 NLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDIL-NIGL----------- 219 (406)
T ss_dssp HHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTHHHH-TTTT-----------
T ss_pred HHHHHHHhhCCCCcEEEEEecCccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHHHhh-hCCH-----------
Confidence 3333322 222 457776666666677899999999999999999999996 322221111100 0010
Q ss_pred hhhHHHHHHHHHHHHHhcCCC-EEEEEcc---CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEc
Q 009410 265 PLLEGEATTRAIRLAEFVNTP-LYVVHVM---SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (535)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~-~~~~H~~---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (535)
+..+.. ..+.|+. ..+. +.++.++ ..+|.. ++..+..
T Consensus 220 ---------------~~~g~~~~~~~H~~~~~~~~~-~~~~~~~------~~~p~~-------------~~~~~~~---- 260 (406)
T 1p1m_A 220 ---------------KEVKTIAAHCVHLPERYFGVL-KDIPFFV------SHNPAS-------------NLKLGNG---- 260 (406)
T ss_dssp ---------------TTSCEEEEECTTCCGGGTTTT-TTSSEEE------EECHHH-------------HHHTTCC----
T ss_pred ---------------hHcCcceeEeeeccCcccCCH-HHHHHHH------HhCcHH-------------HhhcCCC----
Confidence 001110 2345555 3332 2222111 222211 0111110
Q ss_pred CCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHH
Q 009410 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTEC 420 (535)
Q Consensus 341 p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~ 420 (535)
..++++++++|+++++|||+.+.....+ +|. +..+...+.+.+...++|++++++++|.||
T Consensus 261 --------~~~~~~~~~~Gv~~~lgtD~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~ls~~~al~~~T~~~ 321 (406)
T 1p1m_A 261 --------IAPVQRMIEHGMKVTLGTDGAASNNSLN-----LFF------EMRLASLLQKAQNPRNLDVNTCLKMVTYDG 321 (406)
T ss_dssp --------CCCHHHHHHTTCEEEECCCCTTTTSCCC-----HHH------HHHHHHHHHHTTCTTSSCHHHHHHHHTHHH
T ss_pred --------cCcHHHHHhCCCeEEEECCCCcCCCCCC-----HHH------HHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 1238899999999999999876432211 111 233333333333255799999999999999
Q ss_pred HHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccC
Q 009410 421 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 495 (535)
Q Consensus 421 A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~ 495 (535)
|+++|++ + |+|++||.|||||+|.++++.++.+++.+...+.+. ..+|..||++|++|| +|+++..+
T Consensus 322 A~~lgl~-~-G~l~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~v~G~~v~-~g~~~~~d 388 (406)
T 1p1m_A 322 AQAMGFK-S-GKIEEGWNADLVVIDLDLPEMFPVQNIKNHLVHAFS-----GEVFATMVAGKWIYF-DGEYPTID 388 (406)
T ss_dssp HHHHTCS-C-SSCCTTSBCCEEEEECCSGGGCSGGGHHHHHHHTCC-----SCCSEEEETTEEEEE-TTBCTTSC
T ss_pred HHHhCCC-C-cccCCCCcccEEEEeCCccccCCccChHHHheEecC-----CCCceEEEECCEEEE-CCeeCCCC
Confidence 9999995 4 999999999999999987766553332221111111 358999999999999 99998865
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=309.66 Aligned_cols=362 Identities=16% Similarity=0.190 Sum_probs=229.7
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCC------------CCCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~------------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|+|+.+..+++|+|+||||++|++... .+.+.++||++|++|+|||||+|+|+..+
T Consensus 65 ~~dllI~n~~Vid~~gi~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p-- 142 (569)
T 1e9y_B 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 142 (569)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCT--
T ss_pred cCCEEEEeeEEECCCCcEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecCCCc--
Confidence 4689999999999766668999999999999997532 13457899999999999999999998754
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEeccccCCC-C-------ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+ ...+++++||||++|++.... . .....++...+......++++++... .....+.++++
T Consensus 143 ~---------~~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~~~~~~~~~~g~g---~~~~~~~l~e~ 210 (569)
T 1e9y_B 143 Q---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKG---NASNDASLADQ 210 (569)
T ss_dssp T---------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEEC---CCSCHHHHHHH
T ss_pred H---------HHHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhcccCceEEEECCC---CcCCHHHHHHH
Confidence 1 157889999999999854221 0 11334554555444444555544321 11234566666
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
. +.|+.++|++..+ ..+++.++++++.|+++|+++.+|+++......
T Consensus 211 ~-~~Ga~gik~~~~~----~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~g~---------------------------- 257 (569)
T 1e9y_B 211 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEAGC---------------------------- 257 (569)
T ss_dssp H-HTTCSEEEECGGG----CCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCC----------------------------
T ss_pred H-HcCCCEEEecCCC----CCCHHHHHHHHHHHHHhCCEEEEEcCCcccchH----------------------------
Confidence 6 5789999987543 368999999999999999999999975321000
Q ss_pred HHHHHHHHHhcCCCEEEEEccCHHH---HHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccc-ceeEEcCCC----
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSMDA---MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA-AKYVMSPPI---- 343 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~---- 343 (535)
+... ++...+.++|+.|+..... .+.++.+++.|+..+. ++.++.+..+..... +..- ......++.
T Consensus 258 ~~~~--la~~~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv~~~~--~~ptl~~t~~~~~~~-~d~~~v~h~l~~~~~ed~ 332 (569)
T 1e9y_B 258 VEDT--MAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS--TNPTIPFTVNTEAEH-MDMLMVCHHKDKSIKEDV 332 (569)
T ss_dssp HHHH--HHHHTTCCEEETTTTSTTSCSTTTGGGGGGSTTEEEEE--CGGGCSCBTTHHHHH-HHHHHHTTTCCSSCHHHH
T ss_pred HHHH--HHHHcCCCEEEEEcccCcccccHHHHHHHHHcCCeeEe--eCCccccccchhhhh-hchhhhhhhcCcccHHHH
Confidence 0001 1233577889999987542 3678888877752221 111121111111000 0000 000001111
Q ss_pred -----CCcccHHHHHHHHh-cCCeEEEeCCCCCCChhh-hhcCCCCcccCcchHHHHHHHHHHHH----HhcCCCCHHHH
Q 009410 344 -----RASGHNKALQAALA-TGILQLVGTDHCAFNSTQ-KAFGIDDFRKIPNGIEERMHLVWDTM----VESGQISVTDY 412 (535)
Q Consensus 344 -----r~~~~~~~~~~~l~-~Gv~~~lgtD~~~~~~~~-~~~~~~~~~~~~~g~~~~l~~~~~~~----~~~~~ls~~ea 412 (535)
+...+..++++.+. +|+++++|||+.+.+... ... ++| .....+......+ ....++++.++
T Consensus 333 ~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~--~~~-----~~~~~~~~~~G~l~~~~~~~~~ls~~~a 405 (569)
T 1e9y_B 333 QFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVIT--RTW-----QTADKNKKEFGRLKEEKGDNDNFRIKRY 405 (569)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHH--HHH-----HHHHHHHHHHCSCSSCCSSSCHHHHHHH
T ss_pred HHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCccccccc--chh-----hHHHHhHhhccCcchhhccccCCCHHHH
Confidence 11123455555555 799999999987654310 000 000 0001111000000 02456899999
Q ss_pred HHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC-Cee
Q 009410 413 VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-DEL 491 (535)
Q Consensus 413 l~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~-~~~ 491 (535)
|+++|.|||+++|+++++|+|++||.|||||||.+++ ..++..||++|++||.+ |+.
T Consensus 406 l~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~----------------------~~~v~~v~~~G~iv~~~~g~~ 463 (569)
T 1e9y_B 406 LSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF----------------------GVKPNMIIKGGFIALSQMGDA 463 (569)
T ss_dssp HGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT----------------------TTCCSEEEETTEEEEEEECCT
T ss_pred HHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc----------------------CCCccEEEECCEEEEcCCCCc
Confidence 9999999999999987899999999999999998742 13788999999999987 654
Q ss_pred ccc
Q 009410 492 NVV 494 (535)
Q Consensus 492 ~~~ 494 (535)
...
T Consensus 464 ~~~ 466 (569)
T 1e9y_B 464 NAS 466 (569)
T ss_dssp TSS
T ss_pred ccC
Confidence 443
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=293.89 Aligned_cols=342 Identities=17% Similarity=0.151 Sum_probs=211.9
Q ss_pred cccEEEEccEEEcCCC-----c--eeeeEEEeCCEEEEeeCCCCCCC----CceEEecCCCEEeecccccccccccccCC
Q 009410 52 SSKILIKGGTVVNAHH-----Q--QIADVYVEDGIVVAVQPNINVGD----DVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~-----~--~~~~I~I~~G~I~~Vg~~~~~~~----~~~vID~~G~~vlPGlID~H~H~~~~~~g 120 (535)
+.+++|+|++|+|+++ . ++++|+|+||||++||+....+. +.++||++|++|+|||||+|+|+... +
T Consensus 14 ~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~--~ 91 (419)
T 2puz_A 14 NATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFG--G 91 (419)
T ss_dssp -CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCS--S
T ss_pred CCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccch--h
Confidence 4679999999999765 2 57899999999999998654332 25899999999999999999998653 1
Q ss_pred C---------------------------------CchhhhH----HHHHHHHhCCcEEEeccccCCCC--ChHHHHHHHH
Q 009410 121 S---------------------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYE 161 (535)
Q Consensus 121 ~---------------------------------~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~--~~~~~~~~~~ 161 (535)
. .+++... .....++++|||++.++...... .....++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~ 171 (419)
T 2puz_A 92 NRAMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVAR 171 (419)
T ss_dssp CCHHHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCSCCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCchhHHHHHHHHH
Confidence 1 0112222 22356788999999985322211 1223334433
Q ss_pred HHhcccccccc-----eeeeeecC---ChhhHH-----HHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcC
Q 009410 162 KKAKNSCMDYG-----FHMAITKW---DEVVSD-----EMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228 (535)
Q Consensus 162 ~~~~~~~~~~~-----~~~~~~~~---~~~~~~-----~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g 228 (535)
+.......... .+...... ..+..+ .+..+......+.++.+. +....+.+.++++++.|+++|
T Consensus 172 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~g 248 (419)
T 2puz_A 172 RLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAHAEGLADAVDGFC---EGIAFSVKEIDRVFAAAQQRG 248 (419)
T ss_dssp HHTTTSSCEEEEEECCTTCCCGGGTTCHHHHHHHTHHHHHHHHHHTTCCSEECCEE---STTSBCHHHHHHHHHHHHHTT
T ss_pred HHhhhcCceEEEEecccccCchhhcccHHHHHHHHHhhhhhhhhhccccccccccc---CCCCcCHHHHHHHHHHHHHCC
Confidence 33322111111 01000000 011111 111222112244444332 123457899999999999999
Q ss_pred CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCC
Q 009410 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308 (535)
Q Consensus 229 ~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~ 308 (535)
+++.+|+...... ...+ .+...+. ..+.|+...+. +.++++++.|+
T Consensus 249 ~~v~~H~~~~~~~-~~~~-------------------------------~~~~~g~-~~~~H~~~~~~-~~~~~~~~~g~ 294 (419)
T 2puz_A 249 LPVKLHAEQLSNL-GGAE-------------------------------LAASYNA-LSADHLEYLDE-TGAKALAKAGT 294 (419)
T ss_dssp CCBEEEESSSSCC-SHHH-------------------------------HHHHTTC-SEEEECTTCCH-HHHHHHHHHTC
T ss_pred CcEEEEecccccC-CHHH-------------------------------HHHhcCC-ceehHhccCCH-HHHHHHHHcCC
Confidence 9999998543110 0011 1112232 24779988876 88899999998
Q ss_pred cEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc
Q 009410 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (535)
Q Consensus 309 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 388 (535)
.++.+|...+. ++ +.. . .+++.++++|+++++|||+.+.... ..
T Consensus 295 ~~~~~p~~~~~-----------l~-~~~---~---------~~~~~~~~~Gv~~~lgsD~~~~~~~--------~~---- 338 (419)
T 2puz_A 295 VAVLLPGAFYA-----------LR-EKQ---L---------PPVQALRDAGAEIALATDCNPGTSP--------LT---- 338 (419)
T ss_dssp EEEECHHHHHH-----------HT-CCC---C---------CCHHHHHHHTCCEEECCCCCSSSCC--------BC----
T ss_pred cEEECCchhhh-----------hc-ccc---c---------ccHHHHHHCCCeEEEECCCCCCCCc--------cc----
Confidence 88777653110 00 000 1 1278889999999999997553211 10
Q ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCC
Q 009410 389 GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEG 468 (535)
Q Consensus 389 g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~ 468 (535)
.+...+. .++...++|++++|+++|.|||+++|+++++|+|++||+|||||+|.|++..+... +.
T Consensus 339 ~l~~~~~----~~~~~~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~~~~~~~~~~-~~---------- 403 (419)
T 2puz_A 339 SLLLTMN----MGATLFRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELVYR-IG---------- 403 (419)
T ss_dssp CHHHHHH----HHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECCSSTTHHHHC-BS----------
T ss_pred cHHHHHH----HhccccCCCHHHHHHHHHHHHHHHcCCCCCccccCCCCcCCEEEECCCchhcchhh-hc----------
Confidence 1111222 22334579999999999999999999988899999999999999998865433210 00
Q ss_pred eeEeeEEEEEEECCEEEE
Q 009410 469 RRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 469 ~~~~~~v~~v~~~Gr~V~ 486 (535)
..+|..||++|++|.
T Consensus 404 ---~~~v~~v~v~G~~v~ 418 (419)
T 2puz_A 404 ---FNPLHARIFKGQKVS 418 (419)
T ss_dssp ---CCCEEEEEETTEECC
T ss_pred ---CCceEEEEECCEEcC
Confidence 137999999999874
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=299.67 Aligned_cols=365 Identities=14% Similarity=0.023 Sum_probs=231.6
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-CC----------
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------- 121 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g~---------- 121 (535)
++++++|+.+.+ ...++++|+|+||||++|++... .++||++|++|+|||||+|+|+.+... |.
T Consensus 12 ~~l~~~~~~~~~-~~~~~~~v~I~~g~I~~Ig~~~~----~~~iD~~g~~v~PGlID~H~H~~~~~~rg~~~~~~~~~~~ 86 (458)
T 4f0l_A 12 HFIHARQALLPD-GWAENVRIGIAGGVICSIETGVL----AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSADS 86 (458)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEETTEEEEEECSCC----CCTTCEEEEEEEECEEEEEECGGGGGGTTSSCBCCSCSST
T ss_pred hHhhhcceeccC-ccccCceEEEECCEEEEEeCCCc----cccccCCCCEEccCceecccchhhhhhcccccccccCCCc
Confidence 457788877632 22478999999999999998653 356999999999999999999964411 10
Q ss_pred --------------CchhhhHH----HHHHHHhCCcEEEeccccCCC-------CC----hHHHHHHHHHHhcccccccc
Q 009410 122 --------------ETIDDFFS----GQAAALAGGTTMHIDFVIPIN-------GS----LTAGFEAYEKKAKNSCMDYG 172 (535)
Q Consensus 122 --------------~~~~~~~~----~~~~~l~~GvTtv~d~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~ 172 (535)
.++++++. ....++++||||+.|+..... .. ....++...+.+.+..+...
T Consensus 87 ~~~w~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~g~r~~~~~~ 166 (458)
T 4f0l_A 87 FWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLPV 166 (458)
T ss_dssp THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHHHcCCeEEEecc
Confidence 02222322 233467899999999743211 01 23444445554544332211
Q ss_pred eee-----eeec---------CChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcC-
Q 009410 173 FHM-----AITK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE- 236 (535)
Q Consensus 173 ~~~-----~~~~---------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~- 236 (535)
+.. .... ..++..+.+..+.+. .+...+.+.+.+++....+++.++++++.|+ |+++++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~--g~~v~~H~~e 244 (458)
T 4f0l_A 167 FYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDSVTQLLP--DAPVHIHVAE 244 (458)
T ss_dssp ECCEEETTTEECCGGGTTTCCCHHHHHHHHHHHHHHHTTCTTCEECBEECBTTTSCHHHHHHHTTSST--TSCEEEEESC
T ss_pred hhccccccccCCchhhhhhhcCHHHHHHHHHHHHHHhccCCceEEEEecCCcCcCCHHHHHHHHHHhc--CCCEEEEeCC
Confidence 111 0110 111222333333321 2334455555666677889999999999998 999999985
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEecccc
Q 009410 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~ 316 (535)
.........+. .|.. .+..+.+ ....+.++.+.|+...+. ++++.+++.|+.++.||..
T Consensus 245 ~~~~~~~~~~~---~g~~----------------~~~~l~~-~g~l~~~~~~~H~~~~~~-~~~~~l~~~g~~~~~~p~s 303 (458)
T 4f0l_A 245 QVKEVEDCIAW---SGKR----------------PVEWLLD-HQDVTARWCLIHATHMSD-EETKHMAKAGAIAGLCPVT 303 (458)
T ss_dssp SHHHHHHHHHH---HSSC----------------HHHHHHH-HSCCCTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHH
T ss_pred CHHHHHHHHHH---hCCC----------------HHHHHHH-cCCCCCCeEEEEeccCCH-HHHHHHHHcCCeEEECccc
Confidence 44443333322 1211 1111222 223567888999998876 8899999999999988864
Q ss_pred ceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHH
Q 009410 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHL 396 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 396 (535)
. +..+... .++++++++|+++++|||..+.. + +|. +++...
T Consensus 304 ~-------------~~l~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~-~-------~~~------~~~~~~ 344 (458)
T 4f0l_A 304 E-------------ANLGDGT------------FNATEFAAAGGKFGIGSDSNVLI-G-------IGD------ELRQLE 344 (458)
T ss_dssp H-------------HHTTCCC------------CCHHHHHHTTCEEEECCBTTSSC-C-------HHH------HHHHHH
T ss_pred c-------------ccccCCC------------ccHHHHHHCCCeEEEECCCCCCC-C-------HHH------HHHHHH
Confidence 2 1121211 12889999999999999953211 1 111 223333
Q ss_pred HHHHHHh--------cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCC
Q 009410 397 VWDTMVE--------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEG 468 (535)
Q Consensus 397 ~~~~~~~--------~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~ 468 (535)
...+... ..+++++++|+++|.|||+++|+ ++|+|++||.|||||+|.++++..+.+++.+ ..+|.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~--~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~---~~~~~~ 419 (458)
T 4f0l_A 345 YSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR--PEDGLKKGASADFVSLDVERLPHAKGDVVLD---GWIFAG 419 (458)
T ss_dssp HHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTC--TTCSSSTTSBCCEEEEECTTSTTCCHHHHHH---HHHHTS
T ss_pred HHHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCC--CCCcCCCCCcCCEEEEeCCCCccCCcccHHH---hCeEcC
Confidence 3333322 23599999999999999999999 4899999999999999998776544322222 223333
Q ss_pred eeEeeEEEEEEECCEEEEECCeec
Q 009410 469 RRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 469 ~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
. . +|..||++|++||++|+++
T Consensus 420 ~--~-~v~~v~v~G~~v~~~g~~~ 440 (458)
T 4f0l_A 420 R--A-HVCDVWVRGVKQVEGGRHR 440 (458)
T ss_dssp C--C-EEEEEEETTEEEEETTEET
T ss_pred C--C-CceEEEECCEEEEECCEeC
Confidence 3 3 8999999999999999974
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=302.78 Aligned_cols=371 Identities=16% Similarity=0.084 Sum_probs=229.7
Q ss_pred EEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccCC-CC-------
Q 009410 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SE------- 122 (535)
Q Consensus 55 ~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~g-~~------- 122 (535)
++|+|++|+++++. ++++|+| ||+|++||+.... .++.++||++|++|+|||||+|+|+.+.... ..
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i-~g~I~~Vg~~~~~~~~~~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~~~l~~ 80 (427)
T 3v7p_A 2 RIIKPFAILTPQTIIQDKAVAF-DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIP 80 (427)
T ss_dssp EEEEEEEEECSSSEEESCEEEE-SSBEEEEECHHHHHHHCTTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCCSSHHH
T ss_pred EEEECCEEEcCCCEEeCcEEEE-CCEEEEecChhhhccccCCceEEeCCCCEEecCEeecccCcchhhcccccccCCHHH
Confidence 68999999998864 6899999 9999999985432 2457899999999999999999999765211 00
Q ss_pred ------------chhhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChhhHH
Q 009410 123 ------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (535)
Q Consensus 123 ------------~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (535)
++++. ......++++||||+.|+...... ++...+.+.+..+.............+..+
T Consensus 81 wl~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~-----~~a~~~~Gir~~~~~~~~~~~~~~~~~~~~ 155 (427)
T 3v7p_A 81 WLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAISSYGED-----LQACIDSALKVVYFNEVIGSNAATADVMYA 155 (427)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTEEEEEEEESSSTT-----HHHHHHBSSEEEEEEEECBCCGGGHHHHHH
T ss_pred HHHHHHHhHHhcCHHHHHHHHHHHHHHHHHhCCEEEEEecCcHHH-----HHHHHhcCCeEEEeccccCCChhhhhHHHH
Confidence 11111 123345788999999998654221 344444443322211111100001111112
Q ss_pred HHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHH-------HHHHcCCCC
Q 009410 187 EMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQK-------RMIELGITG 255 (535)
Q Consensus 187 ~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~-------~~~~~g~~~ 255 (535)
+..+..+ ......++..+..++.+.++++.++++++.|+++|+++++|+.+. .......+ .+...|...
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~~~~~~~~~~~~ 235 (427)
T 3v7p_A 156 SFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFFKEFLNQT 235 (427)
T ss_dssp HHHHHHHHHHTTCBTTEEEEEEECCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhccCCceEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcchhhhhhhccCC
Confidence 2222111 122455777777778888999999999999999999999998544 33322221 111122110
Q ss_pred cccccccCChhhHHHHHHHHHHHHHh-cCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccc
Q 009410 256 PEGHALSRPPLLEGEATTRAIRLAEF-VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (535)
.|. ....+.... .+.++.+.|+...+. ++++.+++.|+.+..||..+ +..+
T Consensus 236 -------~~~-------~~~~~~l~~~~~~~~~~~H~~~~~~-~~~~~l~~~g~~~~~~p~s~-------------~~~~ 287 (427)
T 3v7p_A 236 -------RPV-------NDTKSFLELFKELHTLFVHMVWANE-EEIQTIASYNAHIIHCPISN-------------RLLG 287 (427)
T ss_dssp -------SCS-------SCHHHHHHTTTTSEEEEEECTTCCH-HHHHHHHHSEEEEEECHHHH-------------HHTT
T ss_pred -------Ccc-------cCHHHHHhhhcCCCEEEEECCCCCH-HHHHHHHHcCCEEEECHHHH-------------HHhc
Confidence 110 011221122 467788999998887 88999999999998888642 1111
Q ss_pred ceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHH
Q 009410 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVR 414 (535)
Q Consensus 335 ~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~ 414 (535)
... +| ++++ +|+++++|||+...+.... +|. +++....... ....+++++++|+
T Consensus 288 ~~~---~~---------~~~~--~Gv~v~lgtD~~~~~~~~~-----~~~------~~~~a~~~~~-~~~~~~~~~~~~~ 341 (427)
T 3v7p_A 288 NGV---LD---------LEKI--KSIPYAIATDGLSSNYSLN-----MYE------ELKAALFVHP-NKEATTFAKELII 341 (427)
T ss_dssp CCC---CC---------TTTT--TTSCEEECCCCTTSCSCCC-----HHH------HHHHHHHHST-TSCHHHHHHHHHH
T ss_pred CCC---CC---------HHHH--CCCeEEEeCCCCCCCCCCC-----HHH------HHHHHHHhcc-CCCcccCHHHHHH
Confidence 111 12 3333 8999999999644322211 111 2222222211 0111256789999
Q ss_pred HHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 415 LTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 415 ~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
++|.+||+++|++ .|+|++||.|||||+|.+.++..+.++.. ......++|..||++|++||++|+++..
T Consensus 342 ~~t~~~a~~~g~~--~g~l~~G~~Ad~~~~d~~~~~~~~~~~~~--------~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 411 (427)
T 3v7p_A 342 RATKAGYDALGFE--GGEIAVGKDADMQLIDLPEGLTNVEDLYL--------HVILHTTKPKKVYIQGEEHVREAENLYF 411 (427)
T ss_dssp HHTHHHHHHHTCS--CSSCCTTSBCCEEEEECCTTCCCGGGHHH--------HHHHHCSSCSEEEETTEEEEC---CCCB
T ss_pred HHHHHHHHHhCCC--CceeCCCCccCEEEEcCCCccCCCccchH--------HHhcccCCccEEEECCEEEEECCcccCC
Confidence 9999999999994 89999999999999999877655432211 1111135799999999999999999886
Q ss_pred C
Q 009410 495 P 495 (535)
Q Consensus 495 ~ 495 (535)
.
T Consensus 412 ~ 412 (427)
T 3v7p_A 412 Q 412 (427)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=287.89 Aligned_cols=321 Identities=13% Similarity=0.131 Sum_probs=243.4
Q ss_pred CCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccc-cccceee
Q 009410 99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC-MDYGFHM 175 (535)
Q Consensus 99 ~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~~ 175 (535)
.|++|+||+||+|+|+.. |. ......+++++||||+++|.+..+. ...+.++.+.+... ... +++.++.
T Consensus 22 ~~~~vlPG~ID~HvHlre---G~-----~~~e~~aA~aGG~Ttvi~mPnt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~ 93 (359)
T 3pnu_A 22 SNAMKLKNPLDMHLHLRD---NQ-----MLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACKDENFTPLM 93 (359)
T ss_dssp SCCEEEESCEEEEECCCS---HH-----HHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCcEEccCcEEccccCCC---CC-----cchhHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHHhccCCCceEEEee
Confidence 489999999999999975 22 2233457888999999999765443 45555655555443 344 7888887
Q ss_pred e--eecCChhhHHHHHHHHHHcCCCEEEEEeecC------CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009410 176 A--ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (535)
Q Consensus 176 ~--~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~------~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 247 (535)
. .+..+ .+++.++. +. +.++|+|+.+. +....+.+.++++++.+++.|.++.+|+++...+.
T Consensus 94 ~l~lt~~~---~~el~~l~-~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~----- 163 (359)
T 3pnu_A 94 TLFFKNYD---EKFLYSAK-DE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVM----- 163 (359)
T ss_dssp EEECSCCC---HHHHHHHT-TT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGG-----
T ss_pred eeEecCCC---HHHHHHHH-Hh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhH-----
Confidence 7 55322 35566655 34 77899988642 22334899999999999999999999998775310
Q ss_pred HHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc-CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccc
Q 009410 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (535)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (535)
..|...+.+++.++++. +.++|+.|+++.++++.++.+ .+|+++++|||++++.+++
T Consensus 164 ------------------~~E~~ai~r~~~la~~~~g~~lhi~HvSt~~~v~~I~~A----~~VtaEv~phhL~lt~~~~ 221 (359)
T 3pnu_A 164 ------------------DRESNFAKIYEKLAKHFPRLKIVMEHITTKTLCELLKDY----ENLYATITLHHLIITLDDV 221 (359)
T ss_dssp ------------------GTTGGGHHHHHHHHHHCTTSCEEECSCCSHHHHHHHHHC----TTEEEEECSGGGTCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHcCCCcEEEEecCcHHHHHHHHhc----CCceEEEechhhEEcHHHh
Confidence 12334577788888865 999999999998876666654 7899999999999999887
Q ss_pred cCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeE-EEeCCCCCCChhhhhcCCCCcccCcc--hHHHHHHHHHHHHHh
Q 009410 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPN--GIEERMHLVWDTMVE 403 (535)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~--g~~~~l~~~~~~~~~ 403 (535)
.... .+..++++||+|...+++++|+.+++|.+. .++|||+|+....+.. +|. .++ +++..+++++.. +.
T Consensus 222 ~~~~--~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~---~~g-~~Gi~~~~~~L~l~~~~-~~ 294 (359)
T 3pnu_A 222 IGGK--MNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKEC---CGC-AAGVFSAPVILPVLAEL-FK 294 (359)
T ss_dssp HTSS--CCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC---------CC-CSCBCCGGGHHHHHHHH-HH
T ss_pred cCcC--CCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCC---CCC-CCChhhHHHHHHHHHHH-Hh
Confidence 5322 247889999999999999999999999998 7999999999888753 342 333 566666777743 33
Q ss_pred cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCC-CCeeEeeEEE
Q 009410 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY-EGRRVKGKVE 476 (535)
Q Consensus 404 ~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~-~~~~~~~~v~ 476 (535)
. +++++++++..|.|||++||+..+. | |||+|+| ..|.++++.+.++..|+|| +|..+.++|.
T Consensus 295 ~-~~~l~~lv~~~s~nPAki~gL~~~~-----G--Adlvl~d--~~~~v~~~~~~s~~~~tPf~~G~~l~G~v~ 358 (359)
T 3pnu_A 295 Q-NSSEENLQKFLSDNTCKIYDLKFKE-----D--KILTLEE--KEWQVPNVYEDKYNQVVPYMAGEILKFQLK 358 (359)
T ss_dssp H-HSCHHHHHHHHTHHHHHHHTCCCSS-----C--CEEEEEC--CCEECCSCEECSSCEECCTTTTCEESCEEC
T ss_pred h-cCCHHHHHHHHHHhHHHHhCCCCCC-----C--CeEEEEe--cCEEeCchhcccCCCccccCCCCEEEEEEe
Confidence 3 4799999999999999999996443 4 9999999 7899999999999999999 9998888774
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=295.13 Aligned_cols=331 Identities=20% Similarity=0.164 Sum_probs=222.0
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
.++++|+|++|+|+.+ ...++|+|+||||++|++......+.++||++|++|+|||||+|+|+... ..+++.
T Consensus 34 ~~dlli~n~~ivd~~~~~~~~~dI~I~~G~I~~Vg~~~~~~~~~~vID~~G~~v~PG~ID~H~Hl~~~---~~~~~~--- 107 (608)
T 3nqb_A 34 RFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHMHIESS---MITPAA--- 107 (608)
T ss_dssp CEEEEEESCEEECTTTCCEEECEEEEETTEEEEEECTTSCCCEEEEEECTTSEEEECEEEEEECGGGG---TSCHHH---
T ss_pred CCCEEEECeEEEECCCCeEEeeEEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCeEecccCcccc---cCCHHH---
Confidence 6889999999999864 46789999999999999865334568899999999999999999999765 234443
Q ss_pred HHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcccccccceee-eeec--------CChhhHHHHHHHHHHcCCCE
Q 009410 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHM-AITK--------WDEVVSDEMEVMVKEKGINS 199 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~g~~~ 199 (535)
..+.++.+||||++++...... .....++...+.......++.+.. .... ......+++.++.+..++.+
T Consensus 108 ~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~~~v~g 187 (608)
T 3nqb_A 108 YAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGG 187 (608)
T ss_dssp HHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTSTTEEE
T ss_pred HHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhccCcce
Confidence 3678899999999975321111 123444444444433333332222 1100 01123456667664567788
Q ss_pred EEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHH
Q 009410 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (535)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (535)
++.++++.+. ....+.+.+.++.|++.|+++.+|+..... ..+..+..
T Consensus 188 lgE~~~~~~v-~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~--~~L~~~~~----------------------------- 235 (608)
T 3nqb_A 188 IAEIMNMRGV-IERDPRMSGIVQAGLAAEKLVCGHARGLKN--ADLNAFMA----------------------------- 235 (608)
T ss_dssp EEEECCHHHH-HTTCHHHHHHHHHHHHHTCEEEECCTTCCH--HHHHHHHH-----------------------------
T ss_pred eeEeeccCCc-CCCcHHHHHHHHHHHHcCCEEEEcCCCCCH--HHHHHHHH-----------------------------
Confidence 8877765432 235678999999999999999999975432 12222222
Q ss_pred HhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHh--
Q 009410 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALA-- 357 (535)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~-- 357 (535)
.+.. ..|+....+ +.++.++ .|+.+... .. . ..+...+..+++
T Consensus 236 --aGv~--~~H~~~~~e-ea~e~l~-~G~~i~i~-gs-------------------~---------~~~~~~l~~~i~~~ 280 (608)
T 3nqb_A 236 --AGVS--SDHELVSGE-DLMAKLR-AGLTIELR-GS-------------------H---------DHLLPEFVAALNTL 280 (608)
T ss_dssp --TTCC--EECCCCSHH-HHHHHHH-TTCEEEEE-SS-------------------S---------GGGHHHHHHHHHHH
T ss_pred --cCCC--eeeccCCHH-HHHHHHH-CCCEEEEe-cc-------------------c---------cccHHHHHHHHHhH
Confidence 2333 368766654 6666654 68766543 11 0 001123444443
Q ss_pred --cCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccC
Q 009410 358 --TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILV 435 (535)
Q Consensus 358 --~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~ 435 (535)
.|++++++||+... .... . +..+...++.+++. |++++++++++|.|||++||+ +++|+|++
T Consensus 281 ~~~g~~v~lgTD~~~p-~~~~-------~------~g~l~~~v~~~~~~-Gls~~eal~~aT~n~A~~lgl-~~~G~i~~ 344 (608)
T 3nqb_A 281 GHLPQTVTLCTDDVFP-DDLL-------Q------GGGLDDVVRRLVRY-GLKPEWALRAATLNAAQRLGR-SDLGLIAA 344 (608)
T ss_dssp TSCCTTEEEECBSCCH-HHHH-------H------TCSHHHHHHHHHHT-TCCHHHHHHHHTHHHHHHHTC-TTSSCCST
T ss_pred hhcCceEEEecCCCCC-cchh-------h------hcchHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCC-CCCcCcCC
Confidence 79999999996421 1100 0 01244445455555 799999999999999999999 57899999
Q ss_pred CCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeeccc
Q 009410 436 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 494 (535)
Q Consensus 436 Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~ 494 (535)
||.||||++|.-. ..+|..||++|++|+++|+++..
T Consensus 345 G~~ADlvv~d~l~-----------------------~~~v~~v~~~G~~v~~~g~~~~~ 380 (608)
T 3nqb_A 345 GRRADIVVFEDLN-----------------------GFSARHVLASGRAVAEGGRMLVD 380 (608)
T ss_dssp TSBCCEEEESCTT-----------------------TCCEEEEEETTEEEEETTEECSC
T ss_pred CCCccEEEECCCC-----------------------CCcceEEEECCEEEEECCeEecc
Confidence 9999999998410 12799999999999999998754
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-33 Score=282.80 Aligned_cols=344 Identities=22% Similarity=0.200 Sum_probs=210.9
Q ss_pred cccEEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCC--------
Q 009410 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE-------- 122 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~-------- 122 (535)
+++++|+|++|+|+++. ..++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|++....+..
T Consensus 4 ~~~~~i~~~~i~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~~~~~~~~~~ 82 (396)
T 3ooq_A 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-DPDAEIVDLTGKFLFPGFVDAHSHIGLFEEGVGYYYSDGNE 82 (396)
T ss_dssp --CEEEEEEEECCSSSCCEEEEEEEETTEEEEEESCCC-CTTSEEEECTTCEEEECEEEEEECTTTSCTTSCGGGCCSCC
T ss_pred cceEEEECcEEEeCCCCeEEeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEecCEEecccccCccccCcccccccccc
Confidence 46789999999998753 34999999999999998766 667899999999999999999999986521110
Q ss_pred ---------chhhh----HHHHHHHHhCCcEEEeccccCCCC---------ChHHHHHHHHHHhcc-cccccceeee---
Q 009410 123 ---------TIDDF----FSGQAAALAGGTTMHIDFVIPING---------SLTAGFEAYEKKAKN-SCMDYGFHMA--- 176 (535)
Q Consensus 123 ---------~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~--- 176 (535)
...+. ......++++||||++++++..+. ......+........ ....++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~gs~~~i~G~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~ 162 (396)
T 3ooq_A 83 ATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSIIVEECIVKDPAGLKMAFGENPKRVY 162 (396)
T ss_dssp TTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCCSSSSEEEEEEEEESCCSSHHHHEEEEEEEEEEECSHHHHHHH
T ss_pred ccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCCCCCcccCeeEEEeccCCCHHHceecCCcEEEEEcCCCCcccc
Confidence 11111 135678899999999998544321 000011110000000 0000110000
Q ss_pred -----eecCChhhHHHHHHHHHHcCCCEEE---EEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH
Q 009410 177 -----ITKWDEVVSDEMEVMVKEKGINSFK---FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248 (535)
Q Consensus 177 -----~~~~~~~~~~~~~~~~~~~g~~~ik---~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 248 (535)
.+.........+++.... +....+ ......+.. ...+...+.+..+.+.++++.+|+.....+
T Consensus 163 ~~~~~~p~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~g~~-~~~~~~~e~l~~~~~~~~~v~iHa~~~~~i------- 233 (396)
T 3ooq_A 163 GERKQTPSTRMGTAGVIRDYFTK-VKNYMKKKELAQKEGKEF-TETDLKMEVGEMVLRKKIPARMHAHRADDI------- 233 (396)
T ss_dssp HHTTCSCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCC-CCCCHHHHHHHHHHTTSSCEEEEECSHHHH-------
T ss_pred cccCCCCccHHHHHHHHHHHHHH-HHHHHHhhhhhhhccCCC-CCcChhHHHHHHHHcCCCcEEEEECchhHH-------
Confidence 000000111222222110 000000 000000111 122233444445568899999999776432
Q ss_pred HHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccC
Q 009410 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWH 328 (535)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 328 (535)
.+++++..+.+.++.+.|+.... +.++.+++.|+.++.||.....
T Consensus 234 ------------------------~~~~~~~~~~g~~~~i~H~~~~~--~~~~~l~~~gv~v~~~P~~~~~--------- 278 (396)
T 3ooq_A 234 ------------------------LTAIRIAEEFGFNLVIEHGTEAY--KISKVLAEKKIPVVVGPLLTFR--------- 278 (396)
T ss_dssp ------------------------HHHHHHHHHHTCCEEEEECTTGG--GGHHHHHHHTCCEEECCCSSCC---------
T ss_pred ------------------------HHHHHHHHHcCCCEEEecCchHH--HHHHHHHHCCCCEEECcccccc---------
Confidence 23445556667888899998866 3588899999999988763110
Q ss_pred cCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCC
Q 009410 329 SDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQIS 408 (535)
Q Consensus 329 ~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls 408 (535)
.++... .....+++.++++|+++++|||+...+... +.... .+....+++
T Consensus 279 ~~~~~~-----------~~~~~~~~~l~~~Gv~v~lgtD~~~~~~~~------------------l~~~~-~~~~~~gl~ 328 (396)
T 3ooq_A 279 TKLELK-----------DLTMETIAKLLKDGVLIALMCDHPVIPLEF------------------ATVQA-ATAMRYGAK 328 (396)
T ss_dssp CSGGGT-----------TCCTTHHHHHHHTTCCEEECCTTTTSCGGG------------------HHHHH-HHGGGGTCC
T ss_pred cchhHH-----------hhhhHHHHHHHHCCCEEEEEcCCCccCccH------------------HHHHH-HHHHHcCCC
Confidence 011000 011245889999999999999974332211 11222 222345799
Q ss_pred HHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 409 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 409 ~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
++++|+++|.|||+++|+++++|+|++||.|||||+|.|++.. ..+|+.||++|++||+.
T Consensus 329 ~~~al~~~T~n~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~--------------------~~~v~~v~~~G~~v~~~ 388 (396)
T 3ooq_A 329 EEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFDM--------------------KSVVERVYIDGVEVFRR 388 (396)
T ss_dssp HHHHHHTTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTST--------------------TCCEEEEEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeECCCCcCCEEEECCCcccc--------------------ccceeEEEECCEEEeCC
Confidence 9999999999999999998889999999999999999875421 14799999999999987
Q ss_pred Ce
Q 009410 489 DE 490 (535)
Q Consensus 489 ~~ 490 (535)
..
T Consensus 389 ~~ 390 (396)
T 3ooq_A 389 EG 390 (396)
T ss_dssp C-
T ss_pred CC
Confidence 43
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=294.42 Aligned_cols=347 Identities=18% Similarity=0.184 Sum_probs=218.9
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|+|..+...++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P-- 143 (570)
T 4ac7_C 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP-- 143 (570)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccccCCc--
Confidence 67899999999997777789999999999999985321 2467899999999999999999998755
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEecccc-------CCCC-ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVI-------PING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+. ...++++||||+++... .... .....++...+......++++++..... +...++.++
T Consensus 144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ac7_C 144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp TH---------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred ch---------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence 21 36789999999995322 1111 2344555555555566777777764332 235677777
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
. +.|+.++|++.++ ..+++.++++++.|++.++++.+|+++........+.+.
T Consensus 212 ~-~aGa~gfK~~~~~----~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g~Vedale---------------------- 264 (570)
T 4ac7_C 212 I-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLR---------------------- 264 (570)
T ss_dssp H-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHH----------------------
T ss_pred H-HcCCCeEeeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhhHHHHHHH----------------------
Confidence 7 7899999998654 358999999999999999999999986532111111111
Q ss_pred HHHHHHHHHhcCCCEEEEEccCH---HHHHHHHHHHHcCCcEEec---cc-cceE--------------eeCcccccCcC
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAGQRVIGE---PV-VSGL--------------VLDDSWLWHSD 330 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~g~~v~~~---~~-~~~~--------------~~~~~~~~~~~ 330 (535)
...+...+..|.... ...+.++.+.+.+ |.+. |+ ++.. ++++....+..
T Consensus 265 --------a~~Gr~ih~~HiEgag~~hapd~i~~~~~~~--vlps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~ 334 (570)
T 4ac7_C 265 --------AINGRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVA 334 (570)
T ss_dssp --------HHTTCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCGGGSSCBTTHHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred --------HhCCCcceeEeeeccccccChHHHHHhccCC--ccccccCCCCCcccchhHHhhhheeeecccCccccchhH
Confidence 112334444443321 1113344333333 2221 11 0000 00000000000
Q ss_pred ccccceeEEcCCCCCc-ccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHH-HH-----h
Q 009410 331 FVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDT-MV-----E 403 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~-~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~-~~-----~ 403 (535)
|. ..|.. ....+.+.+++.|+.+++|||+......... +.. ..+......... .. .
T Consensus 335 ~a---------~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~-----~~~---~~~~a~~~~~~rg~l~~~~~~ 397 (570)
T 4ac7_C 335 FA---------DSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEM-----VLR---TWQTADKMKKQRGPLAEEKNG 397 (570)
T ss_dssp HH---------HHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCH-----HHH---HHHHHHHHHHHHCSCTTCCTT
T ss_pred HH---------HhhhhhhhcccccchhhcCCEEEEECcccccCCcCcc-----cCc---HHHHHHHHHHhcCCCCCcccc
Confidence 00 00000 1123567899999999999996543211000 000 000000000000 00 1
Q ss_pred cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCE
Q 009410 404 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 483 (535)
Q Consensus 404 ~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr 483 (535)
..++++++||+++|.|||+++|+++++|+|++||.|||||||.+++ . .+|..||++|+
T Consensus 398 ~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~-----------------~-----~~v~~t~~~G~ 455 (570)
T 4ac7_C 398 SDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFF-----------------G-----VKADRVIKGGI 455 (570)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGT-----------------T-----TSCSEEEETTE
T ss_pred ccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchhc-----------------c-----CceEEEEECCE
Confidence 3447899999999999999999988899999999999999997633 1 26789999999
Q ss_pred EEEEC
Q 009410 484 VVWEN 488 (535)
Q Consensus 484 ~V~~~ 488 (535)
+||+.
T Consensus 456 ~v~~~ 460 (570)
T 4ac7_C 456 IAYAQ 460 (570)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 99985
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=294.42 Aligned_cols=343 Identities=18% Similarity=0.188 Sum_probs=218.9
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC------------CCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~------------~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|++|+|..+...++|+|+||||++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P-- 143 (570)
T 4ubp_C 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP-- 143 (570)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCCCCc--
Confidence 67899999999997777789999999999999985321 2467899999999999999999998755
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEecccc-------CCCC-ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHH
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFVI-------PING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (535)
+. ...++++||||+++... .... .....++...+......++++++..... +...++.++
T Consensus 144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ubp_C 144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp TH---------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred ch---------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence 21 36789999999995322 1111 2344555555555566777777764332 235677777
Q ss_pred HHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHH
Q 009410 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (535)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (535)
. +.|+.++|++.++ ..+++.++++++.|++.++++.+|+++........+.+.
T Consensus 212 ~-~aGa~gfK~~~~~----~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g~Vedale---------------------- 264 (570)
T 4ubp_C 212 I-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLR---------------------- 264 (570)
T ss_dssp H-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHH----------------------
T ss_pred H-HcCCCeEeeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhhHHHHHHH----------------------
Confidence 7 7899999998654 358999999999999999999999986532111111111
Q ss_pred HHHHHHHHHhcCCCEEEEEccCH---HHHHHHHHHHHcCCcEEec---ccc-ceE--------------eeCcccccCcC
Q 009410 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAGQRVIGE---PVV-SGL--------------VLDDSWLWHSD 330 (535)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~g~~v~~~---~~~-~~~--------------~~~~~~~~~~~ 330 (535)
...+...+..|.... ...+.++.+.+.+ |.+. |+. +.. ++++....+..
T Consensus 265 --------a~~Gr~ih~~HiEgag~~hapd~i~~~~~~~--vlps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~ 334 (570)
T 4ubp_C 265 --------AINGRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVA 334 (570)
T ss_dssp --------HHTTCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHH
T ss_pred --------HhCCCceeEEEecccccccChHHHHHhccCC--ccccccCCCCCcccchhHHhhhheeeecccCccccchhH
Confidence 112334444443321 1113344333333 2221 110 000 00000000000
Q ss_pred ccccceeEEcCCCCCc-ccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHH--HHHHH-----
Q 009410 331 FVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLV--WDTMV----- 402 (535)
Q Consensus 331 ~~~~~~~~~~p~~r~~-~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~--~~~~~----- 402 (535)
|. ..|.. ....+.+.+++.|+.+++|||+......... +...+... .....
T Consensus 335 ~a---------~~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~------------~~~~~~~a~~~~~~rg~l~~ 393 (570)
T 4ubp_C 335 FA---------DSRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEM------------VLRTWQTADKMKKQRGPLAE 393 (570)
T ss_dssp HH---------HHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCH------------HHHHHHHHHHHHHHHCSCTT
T ss_pred HH---------HhhhhhhccccccchhhcCCEEEEECcccccCCcCcc------------cCcHHHHHHHHHHhcCCCCC
Confidence 00 00000 1123567899999999999996543211000 00001110 00000
Q ss_pred ---hcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEE
Q 009410 403 ---ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTI 479 (535)
Q Consensus 403 ---~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~ 479 (535)
...++++++||+++|.|||+++|+++++|+|++||.|||||||.+++ . .+|..||
T Consensus 394 ~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~-----------------~-----~~v~~t~ 451 (570)
T 4ubp_C 394 EKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFF-----------------G-----VKADRVI 451 (570)
T ss_dssp CCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGT-----------------T-----TSCSEEE
T ss_pred ccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECcccc-----------------c-----CCeeEEE
Confidence 12347899999999999999999988899999999999999997633 1 2678999
Q ss_pred ECCEEEEEC
Q 009410 480 AGGRVVWEN 488 (535)
Q Consensus 480 ~~Gr~V~~~ 488 (535)
++|++||+.
T Consensus 452 ~~G~~v~~~ 460 (570)
T 4ubp_C 452 KGGIIAYAQ 460 (570)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEec
Confidence 999999985
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=292.12 Aligned_cols=361 Identities=14% Similarity=0.102 Sum_probs=227.3
Q ss_pred EEccEEEcCCCc-eeeeEEE-eCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccC-C-------------
Q 009410 57 IKGGTVVNAHHQ-QIADVYV-EDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------------- 120 (535)
Q Consensus 57 i~n~~vi~~~~~-~~~~I~I-~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g------------- 120 (535)
+...+++.+++. ++++|+| +||+|++|++..+. ..++|++| +|+|||||+|+|+.+... |
T Consensus 4 ~~~~~~~~~~~~~~~~~v~i~~~g~I~~ig~~~~~---~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~~~~~~~l~ 79 (453)
T 3mdu_A 4 IFAERALLPEGWARNVRFEISADGVLAEIRPDANA---DGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFW 79 (453)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTSBEEEEESSCCC---TTSEECSS-CEEECEEEEEECGGGGGGTTTTCCCSSTTCCHH
T ss_pred cchhheecCCceecCeEEEEecCCEEEEecCCCCc---ccccccCC-cccccceecccchHHHhhccccccccCCCCcHH
Confidence 445566666664 7899999 89999999987542 34579999 999999999999965521 1
Q ss_pred -----------CCchhhhHHHH----HHHHhCCcEEEeccccCCC-------C----ChHHHHHHHHHHhccccccccee
Q 009410 121 -----------SETIDDFFSGQ----AAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYGFH 174 (535)
Q Consensus 121 -----------~~~~~~~~~~~----~~~l~~GvTtv~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~ 174 (535)
..++++++... ..++++||||+.|+..... . .....++...+.+.+..+...++
T Consensus 80 ~wl~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~ 159 (453)
T 3mdu_A 80 TWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLY 159 (453)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEECBC
T ss_pred HHHHHHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCCeEEEecchh
Confidence 11333333322 3368899999999743211 1 12344555555555433211111
Q ss_pred e-----eee---------cCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEc-C
Q 009410 175 M-----AIT---------KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (535)
Q Consensus 175 ~-----~~~---------~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~ 236 (535)
. ... ...++..+.+..+.+ ..+. .+.+.+++...++++.++++++.|+ .|+++++|+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~e~l~~~~~~A~-~g~~v~~H~~e 235 (453)
T 3mdu_A 160 SHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGH---SLGLCFHSLRAVTPQQIATVLAAGH-DDLPVHIHIAE 235 (453)
T ss_dssp CBSSTTTCBCCGGGGGGCCCHHHHHHHHHHHHHHHHHHTC---EECEEEEETTTSCHHHHHHHHTSSC-TTSCEEEEESC
T ss_pred ccccccCCCCchhhhhccCCHHHHHHHHHHHHHHhhcCCC---eEEEecCCCCcCCHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 0 000 011122233333221 1232 4444555667789999999999999 999999997 4
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEecccc
Q 009410 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~ 316 (535)
+..+.....+. .|.. .+..+.+ ....+.++.+.|+...+. ++++++++.|+.++.||..
T Consensus 236 ~~~e~~~~~~~---~g~~----------------~v~~l~~-~g~~~~~~~~~H~~~~~~-~~i~~la~~g~~v~~~P~s 294 (453)
T 3mdu_A 236 QQKEVDDCQAW---SGRR----------------PLQWLYE-NVAVDQRWCLVHATHADP-AEVAAMARSGAVAGLCLST 294 (453)
T ss_dssp SHHHHHHHHHH---HSSC----------------HHHHHHH-HSCCCTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHH
T ss_pred CHHHHHHHHHH---hCCC----------------HHHHHHH-cCCCCCCeEEEEcCCCCH-HHHHHHHHcCCEEEECchh
Confidence 44444333322 2221 1222222 234466888999998877 8899999999999998864
Q ss_pred ceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHH
Q 009410 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHL 396 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 396 (535)
. +..+... .++++++++|+++++|||.... .+ +|. +++...
T Consensus 295 n-------------~~lg~g~------------~p~~~~~~~Gv~v~lgtD~~~~-~~-------~~~------~~~~~~ 335 (453)
T 3mdu_A 295 E-------------ANLGDGI------------FPATDFLAQGGRLGIGSDSHVS-LS-------VVE------ELRWLE 335 (453)
T ss_dssp H-------------HHTTCCC------------CCHHHHHHTTCEEEECCBTCSC-CC-------HHH------HHHHHH
T ss_pred H-------------hhcCCCC------------CCHHHHHHCCCEEEEECCCCCC-CC-------HHH------HHHHHH
Confidence 2 1122211 1288999999999999995421 11 111 223332
Q ss_pred HHHHHHh---------cCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceee--ecCCccccCCCCC
Q 009410 397 VWDTMVE---------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI--TARSHHSRLDTNV 465 (535)
Q Consensus 397 ~~~~~~~---------~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i--~~~~~~~~~~~~p 465 (535)
...+... ..+++++++|+++|.|||+++|+ ++|+|++||.|||||+|.+.++.. +.+++.+. ..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~--~~G~l~~G~~AD~~~~d~~~~~~~~~~~~~~~~~---~~ 410 (453)
T 3mdu_A 336 YGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ--PIGSLAVGRRADLLVLDGNDPYLASAEGDALLNR---WL 410 (453)
T ss_dssp HHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTS--SCSSCCTTSBCCEEEECTTCHHHHTCCHHHHHHH---HH
T ss_pred HHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCC--CCCccCCCCcCCEEEEeCCCccccCCCccChHHH---he
Confidence 2222221 12699999999999999999999 689999999999999998866543 21111111 11
Q ss_pred CCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 466 YEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 466 ~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
|.+. ..+|..||++|++||++|+++
T Consensus 411 ~~~~--~~~v~~v~v~G~~v~~~g~~~ 435 (453)
T 3mdu_A 411 FAGG--DRQVRDVMVAGRWVVRDGRHA 435 (453)
T ss_dssp HHCC--GGGEEEEEETTEEEEBTTBCT
T ss_pred eeCC--CCCeeEEEECCEEEEECCccC
Confidence 1111 247999999999999999975
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=284.35 Aligned_cols=350 Identities=15% Similarity=0.165 Sum_probs=205.1
Q ss_pred EEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccccc--CC---CCchhhhH
Q 009410 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MG---SETIDDFF 128 (535)
Q Consensus 55 ~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~--~g---~~~~~~~~ 128 (535)
++|+|++|++++.. ++++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+.... .. ..+++.++
T Consensus 2 ~li~~~~v~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~g~~~~~~~~~~~~~~~~ 81 (382)
T 1yrr_A 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLE 81 (382)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEECEEEEEESEETTEESSSSTTTSSHHHHH
T ss_pred EEEEeeEEEcCCceeeCCEEEEECCEEEEEecCCCCCccceeecCCCCEEccCEEEEeecccCCcCccccccCCCHHHHH
Confidence 68999999998764 57899999999999997654444578999999999999999999986431 11 12456666
Q ss_pred HHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHH----hcccccccceeeee----e---c--CC---hhh-HHHHHH
Q 009410 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK----AKNSCMDYGFHMAI----T---K--WD---EVV-SDEMEV 190 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~----~---~--~~---~~~-~~~~~~ 190 (535)
.....++++||||++|+...... ...+.+....+. +.+ . ++.+... . . .. .+. .+.++
T Consensus 82 ~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~--~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~- 157 (382)
T 1yrr_A 82 IMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQ-A--LGLHLEGPWLNLVKKGTHNPNFVRKPDAALVD- 157 (382)
T ss_dssp HHHHHHHHTTEEEEEEEEECCCHHHHHHHHHHHHHHHHHCTTS-B--CCEEEECSSCCCSCC-CCCSCSCCHHHHHHHH-
T ss_pred HHHHHHHhCCeEEEEeecCCCCHHHHHHHHHHHHHHhhccCCc-e--eEEEEeCCcCCccccCCCCHHHccCCCHHHHH-
Confidence 67788999999999998643322 122222222222 222 1 1111110 0 0 00 011 34444
Q ss_pred HHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEE-EcC-ChhhHHHHHHHHHHcCCCCcccccccCChhh-
Q 009410 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV-HAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLL- 267 (535)
Q Consensus 191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 267 (535)
+. ..+.+.+|.+.- ...+.+.++++.|+++|+++++ |+. +...+. ...+.|....++.....+...
T Consensus 158 ~~-~~~~~~ik~~~~------~~~~~~~~~~~~a~~~g~~v~~gH~~~~~~~~~----~~~~~G~~~~~h~~~~~~~~~~ 226 (382)
T 1yrr_A 158 FL-CENADVITKVTL------APEMVPAEVISKLANAGIVVSAGHSNATLKEAK----AGFRAGITFATHLYNAMPYITG 226 (382)
T ss_dssp HH-HHTTTTEEEEEE------CGGGSCHHHHHHHHHTTCEEEECSCCCCHHHHH----HHHHHTCCEESSTTTTSCCBCS
T ss_pred HH-HhcCCCEEEEEE------CCCCChHHHHHHHHHCCCEEEEECCCCCHHHHH----HHHHcCCCeeEECCCCCCcccc
Confidence 55 557888887521 0124456789999999999998 997 444333 333456554432221111000
Q ss_pred -HHHHHHHHHHHHHhcCCC-EEEEEccCHHHHHHHHHHHHcC-CcEEeccccceEeeCcccccCcCccccceeEEcCCCC
Q 009410 268 -EGEATTRAIRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAG-QRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (535)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (535)
+...+...+. ..+.. ..+.|+..... +.++.+++.+ ..+..++-. ..... .....+...
T Consensus 227 ~~~g~~~~~l~---~~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~~~d~---------~~~~g-~~~~~~~~~---- 288 (382)
T 1yrr_A 227 REPGLAGAILD---EADIYCGIIADGLHVDY-ANIRNAKRLKGDKLCLVTDA---------TAPAG-ANIEQFIFA---- 288 (382)
T ss_dssp SCCHHHHHHHH---CTTCEEEEECSSSSSCH-HHHHHHHHHHGGGEEEECCB---------CTTTT-SCCSEEEET----
T ss_pred CCcchhhHhhc---CCcceeeecCcccccCH-HHHHHHHHcCCCcEEEECcC---------hHhcC-CCCceEEEC----
Confidence 0000000110 00111 14667765444 5566666655 333333221 00000 000111110
Q ss_pred CcccHHHHHHHHhcCCeE-EEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHH
Q 009410 345 ASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARI 423 (535)
Q Consensus 345 ~~~~~~~~~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 423 (535)
.++.++++|+++ ..|||... .. . +...++.++...++|++++|+++|.|||++
T Consensus 289 ------~~~~~~~~Gv~~~~~Gt~~g~---~~-------------~----~~~~~~~~~~~~g~~~~~al~~aT~~~A~~ 342 (382)
T 1yrr_A 289 ------GKTIYYRNGLCVDENGTLSGS---SL-------------T----MIEGVRNLVEHCGIALDEVLRMATLYPARA 342 (382)
T ss_dssp ------TEEEEECSSCEECTTCCEEEB---CC-------------C----HHHHHHHHHHHHCCCHHHHHHHHTHHHHHH
T ss_pred ------CEEEEEECCEEEeCCCcCcCC---cc-------------C----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 023456778876 33554211 00 0 111122233234799999999999999999
Q ss_pred cCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 424 FNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 424 lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+|+++++|+|++||.|||||+|.| .+|+.||++|++|+++
T Consensus 343 lg~~~~~G~i~~G~~ADlvvld~~-------------------------~~v~~v~~~G~~v~~~ 382 (382)
T 1yrr_A 343 IGVEKRLGTLAAGKVANLTAFTPD-------------------------FKITKTIVNGNEVVTQ 382 (382)
T ss_dssp TTCTTTSSSCCTTSBCCEEEECTT-------------------------SCEEEEEETTEEEEEC
T ss_pred hCCCCCCCccCCCCCCCEEEECCC-------------------------CCEEEEEECCEEEEeC
Confidence 999888999999999999999976 2789999999999975
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=308.75 Aligned_cols=367 Identities=14% Similarity=0.165 Sum_probs=210.7
Q ss_pred CcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCC------------CCCCCCceEEecCCCEEeeccccccccccccc
Q 009410 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN------------INVGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~------------~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~ 118 (535)
...|++|+|++|+|+++...++|+|+||||++||+. ...++++++||++|++|+|||||+|+|+..+
T Consensus 335 ~~~DLVItNA~IVD~tGi~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl~~P- 413 (840)
T 4gy7_A 335 ISLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICP- 413 (840)
T ss_dssp GSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEECCCT-
T ss_pred ccCCEEEeCeEEECCCCeEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCCCCC-
Confidence 367999999999999888899999999999999962 2335678999999999999999999998755
Q ss_pred CCCCchhhhHHHHHHHHhCCcEEEeccccCCCC--------ChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHH
Q 009410 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV 190 (535)
Q Consensus 119 ~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (535)
+ ....++.+||||+++....... .................+++++........ .+.+.+
T Consensus 414 -~---------~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a~~~~~vn~g~~~~~~~~~---~~~L~e 480 (840)
T 4gy7_A 414 -Q---------LVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSK---PDELHE 480 (840)
T ss_dssp -H---------HHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHHTTTSSSEEEEEEECCCSS---SHHHHH
T ss_pred -C---------chHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHHhhhhcceeEEEEeCCCCccc---HHHHHH
Confidence 1 1345688999999976432211 222333333333334445555444333222 344555
Q ss_pred HHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc-ccccccCChhhHH
Q 009410 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP-EGHALSRPPLLEG 269 (535)
Q Consensus 191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 269 (535)
+. ..|+.++|.+..+ ..+++.+.+.+..+++++.++.+|.+.........+.+........ ..|.. ......
T Consensus 481 l~-~aGa~g~K~~~~~----~~t~~~i~~aL~~A~e~g~~V~ih~e~~~~~~~vee~laA~~g~~~h~~~~e-~~~~~~- 553 (840)
T 4gy7_A 481 II-KAGAMGLKLHEDW----GSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRTIHTYHSE-GAGGGH- 553 (840)
T ss_dssp HH-HHTCSEEEEETTT----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTT-STTSCS-
T ss_pred hh-hceeeEEEecccc----CCCHHHHHHHHHHHHHhCCEEEEeccCcchhHHHHHHHHhhcCCcccceecc-cccccc-
Confidence 55 6799999987654 3578999999999999999999998665432222222211111111 00100 000000
Q ss_pred HHHHHHHHHHHhcCCCEEEEEccC------HH-HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 270 EATTRAIRLAEFVNTPLYVVHVMS------MD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~H~~~------~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
+.+.....+....+.+... .. ..+.+...... +++ +.... ....+...++
T Consensus 554 -----A~dii~~~~~a~~l~~~t~~~~~~~~~~~~e~l~~~~~~----------~~l--~~~i~------ed~~~~~s~~ 610 (840)
T 4gy7_A 554 -----APDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMVC----------HHL--DREIP------EDLAFAHSRI 610 (840)
T ss_dssp -----TTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHHH----------TTC--CTTSH------HHHHHHHHHS
T ss_pred -----chHHHHHhhcccceeeEeeccchhhhhhhhhhheeEEee----------ecc--Cccch------hhhhhccCcC
Confidence 0000011111111111100 00 00111111100 000 00000 0001111111
Q ss_pred CCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHH------HHhcCCCCHHHHHHHH
Q 009410 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDT------MVESGQISVTDYVRLT 416 (535)
Q Consensus 343 ~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~------~~~~~~ls~~eal~~~ 416 (535)
.+. .......+.+.|+..+++||+.+.....+.. ....+......... .....+++++++|+++
T Consensus 611 ~~~--~~a~~~ll~dlGvi~~isSD~~p~~~~~e~~--------~~~~~~a~~~~~~~g~~~~e~~~~~~Lsl~eAIr~a 680 (840)
T 4gy7_A 611 RKK--TIAAEDVLNDIGAISIISSDSQAMGRVGEVI--------SRTWQTADKMKAQTGPLKCDSSDNDNFRIRRYIAKY 680 (840)
T ss_dssp CHH--HHHHHHHHHHTTSSCEEECCBTTTBCGGGHH--------HHHHHHHHHHHHHHCSCTTSCSSCCHHHHHHHHHTT
T ss_pred Ccc--chhHHHHHHhCCCeEEEeccccccccccccc--------hhhhcccccchhhcccchhhhhhcCCCCHHHHHHHH
Confidence 111 1122334556799999999987765433210 00000000000000 0124458999999999
Q ss_pred hHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC-Ceecc
Q 009410 417 STECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-DELNV 493 (535)
Q Consensus 417 T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~-~~~~~ 493 (535)
|+|||++||+++++|+|++||+|||||||+..+ ..++++|+++|++||.. |.-..
T Consensus 681 TiNPAraLGLddr~GSIEpGK~ADLVLfDPa~F----------------------GvKPe~Vik~G~Iv~~~~gd~~~ 736 (840)
T 4gy7_A 681 TINPAIANGFSQYVGSVEVGKLADLVMWKPSFF----------------------GTKPEMVIKGGMVAWADIGDPNA 736 (840)
T ss_dssp THHHHHHHTCTTTSSSSCTTSBCCEEEECGGGT----------------------TTCCSEEEETTEEEEEEECCTTS
T ss_pred HHHHHHHhCCCCCccccCCCCcceEEEECchHc----------------------CCCCeEEEECCEEEEcCCCCCCc
Confidence 999999999999999999999999999985422 23789999999999854 44444
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=275.90 Aligned_cols=363 Identities=17% Similarity=0.172 Sum_probs=208.5
Q ss_pred CcccEEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecC-CCEEeeccccccccccccc-CCCCchhhh
Q 009410 51 SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDAT-GKFVMPGGIDPHTHLAMEF-MGSETIDDF 127 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~-G~~vlPGlID~H~H~~~~~-~g~~~~~~~ 127 (535)
|+++++|+|++|++++.. .+++|+|+||+|++|++..+...+.++||++ |++|+|||||+|+|+.... .+..+++++
T Consensus 1 m~~~~li~~~~v~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~ 80 (396)
T 2vhl_A 1 MAESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFSTL 80 (396)
T ss_dssp --CCEEEEEEEEECSSCEEEEEEEEEETTEEEEEESSCCSSCCSEEEECCTTCEEEECEEEEEECEETTEEGGGCSHHHH
T ss_pred CCccEEEEeeEEEcCCccccCceEEEECCEEEEEECCCCCCCCCceEcCCCCCEEcCCEEEEeecCCcCccccCCCHHHH
Confidence 356799999999998764 5789999999999999321111346899999 9999999999999997641 012456777
Q ss_pred HHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcc------cccccceeeeeec-------------CChhhHHH
Q 009410 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN------SCMDYGFHMAITK-------------WDEVVSDE 187 (535)
Q Consensus 128 ~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------------~~~~~~~~ 187 (535)
+...++++++||||++|+....+. .....++...+.... ....++++..... ......+.
T Consensus 81 ~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 160 (396)
T 2vhl_A 81 DIMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVEL 160 (396)
T ss_dssp HHHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSSSEEEEEEEECSSSCGGGCTTSCGGGCCCCCHHH
T ss_pred HHHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccccceEEEeeecCccCccccCCCCHHHccCCCHHH
Confidence 778888999999999999643222 122233333332221 1111222211100 00112455
Q ss_pred HHHHHHHcCCCEEEEEe-ecCCCCcCCHHHHHHHHHHHHhcCCeEEE-EcCC-hhhHHHHHHHHHHcCCCCcccccccCC
Q 009410 188 MEVMVKEKGINSFKFFM-AYKGSFMINDELLIEGFKRCKSLGALAMV-HAEN-GDAVFEGQKRMIELGITGPEGHALSRP 264 (535)
Q Consensus 188 ~~~~~~~~g~~~ik~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (535)
++++. ..+.+.+|++. .+... ...++++.|+++|+++.. |+.. ..... ...+.|...+.+......
T Consensus 161 ~~~~~-~~~~~~ik~~~~~p~~~------~~~~~~~~a~~~g~~v~~gH~~~~~~~~~----~a~~~G~~~i~H~~~~~~ 229 (396)
T 2vhl_A 161 FKKWQ-QEAGGLIKIVTLAPEED------QHFELIRHLKDESIIASMGHTDADSALLS----DAAKAGASHMTHLYNAMS 229 (396)
T ss_dssp HHHHH-HHTTTCEEEEEECGGGS------GGGHHHHHHHHTTCEEEECSBCCCHHHHH----HHHHTTCCEESSTTSSBC
T ss_pred HHHHH-HhcCCcceEEEECCCCC------CHHHHHHHHHHCCCEEeecccCCCHHHHH----HHHHcCCCEeEeCCccCc
Confidence 66665 45667777442 22211 123678889999999988 9963 43332 334456542222111111
Q ss_pred hhhHHHHHHHHHHHHHhcCCCE---EEEEccCHHHHHHHHHHHHc-CC-cEEeccccceEeeCcccccCcCccccceeEE
Q 009410 265 PLLEGEATTRAIRLAEFVNTPL---YVVHVMSMDAMEEIAKARKA-GQ-RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~---~~~H~~~~~~~~~~~~~~~~-g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
... ... ..++.. .....++ .+.|+..... +.++.+.+. +. .+..++.. . ....... ..+..
T Consensus 230 ~~~-~~~-~G~~~~-~~~~~~~~~e~~~h~~~l~~-~~~~~~~~~~~~~~~~~~~~~--~-------~~~g~~~-~~~~~ 295 (396)
T 2vhl_A 230 PFH-HRE-PGVIGT-ALAHDGFVTELIADGIHSHP-LAAKLAFLAKGSSKLILITDS--M-------RAKGLKD-GVYEF 295 (396)
T ss_dssp CCC-SSS-CHHHHH-HHHCTTCEEEEECSSSSSCH-HHHHHHHHHHCTTSEEEECCB--C-------TTTTSCS-EEEEE
T ss_pred ccc-cCC-CCchhh-hhcCCCcEEEEcCCccccCH-HHHHHHHhhcCCccEEEECcC--h-------hhcCCCC-ceEEE
Confidence 000 000 000000 0001122 3456554433 445555554 54 35444332 0 0000000 11111
Q ss_pred cCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
.| +..+.++| .+.+ +|+....... .+...++.+++..++|++++|+++|.|
T Consensus 296 ~~----------~~~~~~~g-~~~~-~d~~~~g~~~-----------------~l~~~l~~~~~~~~~~~~~~l~~aT~~ 346 (396)
T 2vhl_A 296 GG----------QSVTVRGR-TALL-SDGTLAGSIL-----------------KMNEGARHMREFTNCSWTDIANITSEN 346 (396)
T ss_dssp TT----------EEEEEETT-EEEC-TTSCBCSBCC-----------------CHHHHHHHHHHHHCCCHHHHHHHHTHH
T ss_pred CC----------eEEEEECC-EEEe-CCCccccccc-----------------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11 11123456 5555 5543221111 223333344444579999999999999
Q ss_pred HHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeec
Q 009410 420 CARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 492 (535)
Q Consensus 420 ~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~ 492 (535)
||++||+++++|+|++||+|||||+|.+ .+|+.||++|++|++++++-
T Consensus 347 ~A~~lgl~~~~G~i~~G~~ADlvv~d~~-------------------------~~v~~v~~~G~~v~~~~~~~ 394 (396)
T 2vhl_A 347 AAKQLGIFDRKGSVTVGKDADLVIVSSD-------------------------CEVILTICRGNIAFISKEAD 394 (396)
T ss_dssp HHHHHTCTTTSSSCCTTSBCCEEEECTT-------------------------CCEEEEEETTEEEEECSCCC
T ss_pred HHHHhCCcCCCceeCCCCcCCEEEECCC-------------------------CcEEEEEECCEEEEeccccc
Confidence 9999999777999999999999999975 37999999999999998763
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=267.86 Aligned_cols=352 Identities=20% Similarity=0.232 Sum_probs=204.5
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC--CCCceEEecCCCEEeecccccccccccccCCC-CchhhhHH
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-ETIDDFFS 129 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~--~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~-~~~~~~~~ 129 (535)
..++|+|++|++++....++|+|+||+|++|++.... +.+.++||++|++|+|||||+|+|+....... ........
T Consensus 8 ~~~~i~n~~v~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~ 87 (390)
T 1onw_A 8 GFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEV 87 (390)
T ss_dssp CCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEECEEEEEECTTCCBCTTSGGGBCCCC
T ss_pred ceEEEECcEEECCCCCccceEEEECCEEEEEecCcccCCCCCCeEEeCCCCEECcCeeEeeECccccCccccccccCHHH
Confidence 4689999999998766678999999999999976432 23568999999999999999999986431000 00111112
Q ss_pred HHHHHHhCCcEEEeccccCCCC--Ch---HHHHHHHHHHhcccccccceee-eeecCChhhHHHHHHHHHHcCCCEEEEE
Q 009410 130 GQAAALAGGTTMHIDFVIPING--SL---TAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSFKFF 203 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ik~~ 203 (535)
....++++||||++++...... .. ....+.....+.+.....+.+. ............+. .. .....+++.
T Consensus 88 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~-~~--~~~~g~~~~ 164 (390)
T 1onw_A 88 ALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVA-II--DRVIGVKCA 164 (390)
T ss_dssp CHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSCCCSSSCHHHHHH-HC--TTEEEEEEE
T ss_pred HHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCCceEEeccccCCCchhhhhhhcchhh-hH--HHhhcceee
Confidence 3577899999999998644322 11 1222222222222111111110 00111111112111 11 111223565
Q ss_pred eecCCCCcCCHHHHHHHHHHHHhcCC------eEEEEc-CChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHH
Q 009410 204 MAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (535)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 276 (535)
+.+......+.+.+.++++.++..+. .+.+|. ++....... ..+.+.|.....
T Consensus 165 ~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~~~~~~-~~~~~~g~~~v~------------------- 224 (390)
T 1onw_A 165 ISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPI-YDLLENCDVPIS------------------- 224 (390)
T ss_dssp ESSTTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTTTTHHH-HHHHHTCCCCGG-------------------
T ss_pred ecCCCCCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHHHHHHH-HHHHhccCCceE-------------------
Confidence 55555556788999999888876543 367787 333222222 122122211100
Q ss_pred HHHHhcCCCEEEEEccCHHHH--HHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHH
Q 009410 277 RLAEFVNTPLYVVHVMSMDAM--EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354 (535)
Q Consensus 277 ~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 354 (535)
.++..|+...... +.++.+++.+.....++. .|+ ..+...++.
T Consensus 225 --------~l~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~---~~~~~~l~~ 269 (390)
T 1onw_A 225 --------KLLPTHVNRNVPLFEQALEFARKGGTIDITSSI------------------------DEP---VAPAEGIAR 269 (390)
T ss_dssp --------GEEEECGGGSHHHHHHHHHHHHTTCCEEEETTC------------------------CSS---SCHHHHHHH
T ss_pred --------EeeccccccCHHHHHHHHHHHhcCCcccccccc------------------------CCC---CcCHHHHHH
Confidence 1123454322111 344445544432222211 111 134577999
Q ss_pred HHhcCCe---EEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCC
Q 009410 355 ALATGIL---QLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 428 (535)
Q Consensus 355 ~l~~Gv~---~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~ 428 (535)
++++|++ ++++||+.+....... .....+. +....+..+. .+++..+++++++++++|.|||++||+ +
T Consensus 270 ~~~~g~~~d~i~l~TD~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~npA~~~gl-~ 343 (390)
T 1onw_A 270 AVQAGIPLARVTLSSDGNGSQPFFDD----EGNLTHIGVAGFETLLETVQ-VLVKDYDFSISDALRPLTSSVAGFLNL-T 343 (390)
T ss_dssp HHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHH-HHHHHHCCCHHHHHGGGTHHHHHHTTC-T
T ss_pred HHHcCCCccceEEEccCCCCCcccCC----ccccccccCCCHHHHHHHHH-HHHHHcCCCHHHHHHHHhHHHHHHhCC-C
Confidence 9999985 7999998643211000 0000111 2233333333 455556799999999999999999999 4
Q ss_pred CCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecc
Q 009410 429 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 493 (535)
Q Consensus 429 ~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~ 493 (535)
++|+|++|++|||||+|.+ . .|..||++|++|+++|+++.
T Consensus 344 ~~G~i~~G~~ADlvv~d~~-~------------------------~v~~v~~~G~~v~~~g~~~~ 383 (390)
T 1onw_A 344 GKGEILPGNDADLLVMTPE-L------------------------RIEQVYARGKLMVKDGKACV 383 (390)
T ss_dssp TCSSCCTTSBCCEEEECTT-C------------------------CEEEEEETTEEEEETTEESS
T ss_pred CCcccCCCCcCCEEEEcCC-C------------------------cEEEEEECCEEEEECCeEcc
Confidence 6899999999999999965 1 57899999999999999885
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=279.15 Aligned_cols=329 Identities=17% Similarity=0.179 Sum_probs=213.0
Q ss_pred cEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCC-----CCCceEEecCCCEEeecccccccccccc--------c
Q 009410 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINV-----GDDVKVLDATGKFVMPGGIDPHTHLAME--------F 118 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~-----~~~~~vID~~G~~vlPGlID~H~H~~~~--------~ 118 (535)
+++|+|++|+|+++. ...+|+|+||||++||+.... ..++++||++|++|+|||||+|+|+... +
T Consensus 37 ~~li~ng~I~t~~~~~~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~dl 116 (534)
T 3icj_A 37 MKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMVDL 116 (534)
T ss_dssp EEEEESSEEEEEETTEEEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSEEC
T ss_pred CEEEECCEEECCCCCCceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCccCC
Confidence 489999999998765 478999999999999986432 2358899999999999999999997542 0
Q ss_pred C------------------------------------------------------------------CC-----------
Q 009410 119 M------------------------------------------------------------------GS----------- 121 (535)
Q Consensus 119 ~------------------------------------------------------------------g~----------- 121 (535)
. |.
T Consensus 117 ~~~~s~~e~~~~l~~~~~~wi~g~G~~~~~~~~~pt~~~LD~~~~Pv~l~~~~~H~~~~Ns~AL~~~gi~~t~~p~G~tG 196 (534)
T 3icj_A 117 RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTG 196 (534)
T ss_dssp TTCCSHHHHHHHHHTCCSSSEEEEEECHHHHSSCCCHHHHTTSSSCEEEEETTSSEEEECHHHHHHHCCCCCTTEETTTT
T ss_pred CCCCCHHHHHHHHHHHHhhCEEEcccCHHHhcCCCCHHHHhhCCCeEEEEecCCcHhHHhHHHHHHcCCCCCCCCCCCCc
Confidence 0 00
Q ss_pred -----------------C-chhh----hHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeec
Q 009410 122 -----------------E-TIDD----FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (535)
Q Consensus 122 -----------------~-~~~~----~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (535)
. +.+. +......+++.|||++.|+... ....+.++...+.+ +..+++..+...
T Consensus 197 ~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~~--~~~~~~~~~l~~~g-~l~~rv~~~~~~-- 271 (534)
T 3icj_A 197 IVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVG--EKALKALFELEREG-RLKMNVFAYLSP-- 271 (534)
T ss_dssp EEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEC--HHHHHHHHHHHHTT-CCCSEEEEEECG--
T ss_pred eeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHHHHhCC-CCcEEEEEecCH--
Confidence 0 1111 1233445678999999998533 12233333333322 233333222111
Q ss_pred CChhhHHHHHHHHH------HcCCCEEEEEeec-------------------CCCCcCCHHHHHHHHHHHHhcCCeEEEE
Q 009410 180 WDEVVSDEMEVMVK------EKGINSFKFFMAY-------------------KGSFMINDELLIEGFKRCKSLGALAMVH 234 (535)
Q Consensus 180 ~~~~~~~~~~~~~~------~~g~~~ik~~~~~-------------------~~~~~~~~~~l~~~~~~a~~~g~~v~~H 234 (535)
+..+.+.+... .....++|++.+. .|...++++.++++++.|++.|+++.+|
T Consensus 272 ---~~~~~~~~~~~~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v~~A~~~G~~v~~H 348 (534)
T 3icj_A 272 ---ELLDKLEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVH 348 (534)
T ss_dssp ---GGHHHHHHHTCCSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred ---HHHHHHHHhccccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 22333322210 0124567888663 1334578999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEecc
Q 009410 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEP 314 (535)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~ 314 (535)
+.++..+...++.+.+. +.+..+.|+...+. ++++++++.|+.++.+|
T Consensus 349 a~gd~ai~~~l~a~~~~-------------------------------~~r~~ieH~~~~~~-e~i~~la~~gv~~~~~P 396 (534)
T 3icj_A 349 AIGDKAVDVALDAFEEA-------------------------------EFSGRIEHASLVRD-DQLERIKELKVRISAQP 396 (534)
T ss_dssp ECSHHHHHHHHHHHHHH-------------------------------TCCCEEEECCBCCH-HHHHHHHHHTCEEEECT
T ss_pred EcChHHHHHHHHHHHhc-------------------------------cCCCEEEECCCCCH-HHHHHHHHcCCeEEEcc
Confidence 99877666555443221 14567999998887 89999999999988877
Q ss_pred ccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHH
Q 009410 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERM 394 (535)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l 394 (535)
..... +. .+. ..+.. .... ...+++.++++ +++++|||+...+.+ +|. .+
T Consensus 397 ~~~~~--~~-~~~-~~lg~-~r~~---------~~~p~~~l~~~-v~valGSD~p~~~~~-------p~~--------~~ 446 (534)
T 3icj_A 397 HFIVS--DW-WIV-NRVGE-ERAK---------WAYRLKTLSSI-TKLGFSTDSPIEPAD-------PWV--------SI 446 (534)
T ss_dssp THHHH--CT-THH-HHHHH-HHGG---------GBTCHHHHHHH-SCEEECCTTTTSCCC-------HHH--------HH
T ss_pred ccccc--hh-HHH-HhhCH-HHHh---------ccHHHHHHHHh-CCEEeecCCCCCCCC-------HHH--------HH
Confidence 63210 00 000 00000 0000 00238889999 999999996432211 222 11
Q ss_pred HHHHHH--HHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeee
Q 009410 395 HLVWDT--MVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 453 (535)
Q Consensus 395 ~~~~~~--~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~ 453 (535)
...... +....++|++|||+++|.|+|+++|++ ++|+|++||.|||||+|.|++..++
T Consensus 447 ~~av~r~~~~~~~~ls~~eaL~~~T~~~A~~lg~e-~~GsLe~Gk~ADlvvld~dpl~~~~ 506 (534)
T 3icj_A 447 DAAVNRYVVDPGERVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPLKEMK 506 (534)
T ss_dssp HHHHHCCSSCGGGCCCHHHHHHHTTHHHHHHTTCT-TCSCCSTTSBCCEEEESSCTTC---
T ss_pred HHHHhccccCcccCCCHHHHHHHHHHHHHHHhCCC-CCeEECCCCCcCEEEECCChhhccc
Confidence 111111 123567999999999999999999998 9999999999999999998765543
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=281.03 Aligned_cols=343 Identities=14% Similarity=0.061 Sum_probs=202.4
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccccC-C-----
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----- 120 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~~~-g----- 120 (535)
+.+++|+|++|++++. ..+++|+|+||||++|++.... +.+.++||++ ++|+|||||+|+|+..... +
T Consensus 36 ~~~~li~n~~v~~~~~~~~~~~~V~I~~g~I~~vg~~~~~~~~~~~~~viD~~-~~v~PGlID~H~H~~~~~~~g~~~~~ 114 (420)
T 2imr_A 36 HTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG-AVIAPPPVNAHTHLDMSAYEFQALPY 114 (420)
T ss_dssp CCEEEEEESEEECC---EESSEEEEEETTEEEEEECHHHHHHHCTTCEEEECC-SEESSCCCEEEEESSCCHHHHHHCHH
T ss_pred cccEEEECCEEEeCCCCeeeccEEEEECCEEEEecCcccccccCCCCeeecCC-eEECCCCEecCcCcchhhhhhccCCH
Confidence 3568999999999874 3578999999999999975321 1357899999 9999999999999875310 0
Q ss_pred --C-----------CchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHH-HHHHhcccccccceeeeeecC-ChhhH
Q 009410 121 --S-----------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA-YEKKAKNSCMDYGFHMAITKW-DEVVS 185 (535)
Q Consensus 121 --~-----------~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (535)
. ..+.........++++||||++|+... ...++. ..+.+.+....+++.. .... ..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~g~r~~~~~~~~~-~~~~~~~~~~ 188 (420)
T 2imr_A 115 FQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWA-----PEVMDALLAREDLSGTLYFEVLN-PFPDKADEVF 188 (420)
T ss_dssp HHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECS-----HHHHHHHHTCTTCCEEEEEEECB-CCGGGHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCcEEEEEccCC-----HHHHHHHHHhcCcEEEEEeeecC-CCchhhHHHH
Confidence 0 000112345567899999999998632 122321 1111222222111111 0000 01122
Q ss_pred HHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCC-------
Q 009410 186 DEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGIT------- 254 (535)
Q Consensus 186 ~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~------- 254 (535)
++..++.+ ..+.+.++++..+.+....+.+.++++++.|++.|+++.+|+.... ......+ ..|..
T Consensus 189 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~---~~g~~~~~~~~~ 265 (420)
T 2imr_A 189 AAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRT---GGGPLWDNRMPA 265 (420)
T ss_dssp HHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHH---SCSTTGGGSCGG
T ss_pred HHHHHHHHHHhcccCCceEEEecCCcCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHH---hhcccccccccc
Confidence 23333332 2234567887777766778999999999999999999999996443 3332221 11110
Q ss_pred -Cccccc--ccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCc
Q 009410 255 -GPEGHA--LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (535)
Q Consensus 255 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 331 (535)
.+..+. ..++.......+..+.+ ....+.+..+.|+..... +.++.+++.|+.+..||....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~i~H~~~l~~-~~i~~l~~~g~~~~~~p~~~~------------- 330 (420)
T 2imr_A 266 LYPHTLAEVIGREPGPDLTPVRYLDE-LGVLAARPTLVHMVNVTP-DDIARVARAGCAVVTCPRSNH------------- 330 (420)
T ss_dssp GSCSSHHHHHTSCCCTTCCHHHHHHH-HTCGGGCCEEEECCSCCH-HHHHHHHHHTCCEEECHHHHH-------------
T ss_pred chhhhhhhhccccccCCCCHHHHHHH-cCCCCCCeEEEecCcCCH-HHHHHHHHcCCeEEECHHHHH-------------
Confidence 000000 00000000001111111 112233456788876655 678888888988777765311
Q ss_pred cccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHH
Q 009410 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTD 411 (535)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~e 411 (535)
..+. ..+| +++++++|+++++|||+.+...... . ...+..+.. ...++|+++
T Consensus 331 ~~~~---~~~~---------l~~~~~~Gv~~~lgtD~~~~~~~~~-----~--------~~~~~~~~~---~~~~ls~~~ 382 (420)
T 2imr_A 331 HLEC---GTFD---------WPAFAAAGVEVALGTDSVASGETLN-----V--------REEVTFARQ---LYPGLDPRV 382 (420)
T ss_dssp HTTC---CCCC---------HHHHHHTTCCEEECCCCHHHHSCSC-----T--------HHHHHHHHH---HCTTSCHHH
T ss_pred Hhcc---CCCC---------HHHHHHCCCeEEEECCCCccCCCCC-----H--------HHHHHHHHh---cCCCCCHHH
Confidence 1111 1223 7789999999999999743211110 1 112222221 135799999
Q ss_pred HHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCC
Q 009410 412 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 448 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~ 448 (535)
+|+++|.|||+++|+++++|+|++||+||| |+|+++
T Consensus 383 al~~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~~ 418 (420)
T 2imr_A 383 LVRAAVKGGQRVVGGRTPFLRRGETWQEGF-RWELSR 418 (420)
T ss_dssp HHHHHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGCC
T ss_pred HHHHHHHHHHHHhCCCCCceeeCCCCccCE-EEECCC
Confidence 999999999999999878999999999999 677663
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=263.07 Aligned_cols=352 Identities=16% Similarity=0.173 Sum_probs=196.4
Q ss_pred cEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCC-CCCCceEEecCCCEEeecccccccccccccCCC-Cc----h
Q 009410 54 KILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-ET----I 124 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~-~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~-~~----~ 124 (535)
.++|+|++|+|+.+. ++++|+|+||||++||+... .++++++||++|++|+|||||+|+|+....... .. .
T Consensus 3 ~~aI~narviD~~~g~~i~~~~V~I~dG~I~~Ig~~~~~~~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 82 (403)
T 3mtw_A 3 IKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEYS 82 (403)
T ss_dssp EEEEEEEEEEETTTTEEEESEEEEEETTEEEEEEETTCCCCTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGGGGSC
T ss_pred cEEEEceEEEECCCCcEecCcEEEEECCEEEEEeCCCCCCCCCCEEEECCCCEEEeChheeeeCCccccccCcccccccc
Confidence 478999999998753 68999999999999998754 356789999999999999999999987651110 00 1
Q ss_pred hhhH-----HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcc-cc--cccceeee-----------------eec
Q 009410 125 DDFF-----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SC--MDYGFHMA-----------------ITK 179 (535)
Q Consensus 125 ~~~~-----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-----------------~~~ 179 (535)
.... ......+..|+|+..+....... ............. .. ........ ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
T 3mtw_A 83 DRFWSVVQTANAKKTLEAGFTTVRNVGAADYD--DVGLREAIDAGYVPGPRIVTAAISFGATGGHCDSTFFPPSMDQKNP 160 (403)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEECCCSTTH--HHHHHHHHHTTSSCCCEEEECCSCEESTTSTTSCCSSCGGGCCCCT
T ss_pred HHHHhhhhhhhhhhccccccceeecccccccc--chhhhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 1111 12234577899999877543221 1111111111111 00 00000000 000
Q ss_pred C----ChhhHHHHHHHHHHcCCCEEEEEeec--------CCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009410 180 W----DEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (535)
Q Consensus 180 ~----~~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 247 (535)
. ..+......... ..+....+..... ........+.+.++++.|++.+.++..|...........
T Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 237 (403)
T 3mtw_A 161 FNSDSPDEARKAVRTLK-KYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAV-- 237 (403)
T ss_dssp TCCCSHHHHHHHHHHHH-HTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHH--
T ss_pred cccchhHHHhhhhHhhh-hhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeEEEEeccchhHHHHH--
Confidence 0 011222222222 4555555544321 123345789999999999999999999997765433322
Q ss_pred HHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCccccc
Q 009410 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (535)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (535)
..+............ ........ . . ....+...... .........+.....+...
T Consensus 238 --~~~~~~~~~~~~~~~-----~~~~~~~~---~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 292 (403)
T 3mtw_A 238 --RAGVDTIEHASLVDD-----EGIKLAVQ---K-G--AYFSMDIYNTD-YTQAEGKKNGVLEDNLRKD----------- 292 (403)
T ss_dssp --HTTCSEEEECTTCCH-----HHHHHHHH---H-T--CEEECCCSTHH-HHHHHHHHHTCCHHHHHHH-----------
T ss_pred --Hhccccccccccccc-----chhhhhcc---c-c--ceeeeeeccch-hhhhhhhccccchhhcccc-----------
Confidence 223221110000000 00000000 0 0 11112111111 2222222222111100000
Q ss_pred CcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCC
Q 009410 328 HSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQI 407 (535)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l 407 (535)
.............++++|+.+.+|||.......... ..+.. ++ +.|+
T Consensus 293 --------------~~~~~~~~~~~~~~~~~g~~~~~gt~~~~~~~~~~~--------------~~~~~----~~-~~gl 339 (403)
T 3mtw_A 293 --------------RDIGELQRENFRKALKAGVKMVYGTDAGIYPHGDNA--------------KQFAV----MV-RYGA 339 (403)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTCEEECCCCBTTBCTTCGG--------------GHHHH----HH-HTTC
T ss_pred --------------ccccccccchhhHHHhcCCeEeeccCCcccccchHH--------------HHHHH----HH-HcCC
Confidence 000001123466788899999999996543322110 12222 22 4579
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 408 s~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
|++|||+++|.|||++||+++++|+|++||+|||||+|.||+.++. ...+|++||++||+|
T Consensus 340 s~~eal~~~T~npA~~lgl~~~~GsI~~G~~ADlvvld~dPl~di~-----------------~~~~v~~Vi~~G~vv 400 (403)
T 3mtw_A 340 TPLQAIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVAGDPLADVT-----------------TLEKPVFVMKGGAVV 400 (403)
T ss_dssp CHHHHHHHTTHHHHHHHTCTTTSSSCCTTSBCCEEEESSCTTTCGG-----------------GGGSCSEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeeCCCCcceEEEECCChhHhHh-----------------hhcCcCEEEECCEEE
Confidence 9999999999999999999989999999999999999988553332 235789999999975
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=263.66 Aligned_cols=328 Identities=13% Similarity=0.126 Sum_probs=240.9
Q ss_pred CCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-cccccccee--
Q 009410 99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFH-- 174 (535)
Q Consensus 99 ~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-- 174 (535)
++++|+||+||+|+|+... . .......++++||||++||.+..+. ...+.++.+..... ....++.++
T Consensus 4 ~~~~v~PG~ID~HvH~~~g---~-----~~~e~~aa~~gGvTtvv~mpnt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (347)
T 2z26_A 4 SQVLKIRRPDDWHLHLRDG---D-----MLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPL 75 (347)
T ss_dssp CCEEEEECCCEEEECCCSH---H-----HHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEE
T ss_pred CCeEECCCcceeeecCCCC---C-----chhhHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHhcccCCcccEEEE
Confidence 4689999999999999752 1 1223477899999999999754333 33444544444432 223223333
Q ss_pred eeeecCChhhHHHHHHHHHHcCC-CEEEEEeecC----CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHH
Q 009410 175 MAITKWDEVVSDEMEVMVKEKGI-NSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (535)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~-~~ik~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 249 (535)
..+....+...+++..+. +.|+ .++|+|+.+. +....+.+.+.++++.+++.|.++.+|+++....
T Consensus 76 ~~~~~~~~~~~~ei~~l~-~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~-------- 146 (347)
T 2z26_A 76 MTCYLTDSLDPNELERGF-NEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD-------- 146 (347)
T ss_dssp EEEECCTTCCHHHHHHHH-HTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT--------
T ss_pred EEEEeCCCCCHHHHHHHH-HCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc--------
Confidence 333222222356777777 6787 7999998864 2334578899999999999999999999865310
Q ss_pred HcCCCCcccccccCChhhHHHHHHHHH--HHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCccccc
Q 009410 250 ELGITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (535)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (535)
. .+...+...+.+.+ .+++..+.++|+.|.++.+.++.++. .+.+|++++++|+++++++++.
T Consensus 147 ----~--------~~~~~E~~~~~~~i~~~la~~~~~~~hi~Hvst~~~~~~i~~---ak~~Vt~e~~ph~L~l~~~~~~ 211 (347)
T 2z26_A 147 ----I--------DIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRD---GNERLAATITPQHLMFNRNHML 211 (347)
T ss_dssp ----S--------CGGGHHHHHHHHTHHHHHHHSTTCCEEECSCCSHHHHHHHHT---SCTTEEEEECHHHHHCCHHHHH
T ss_pred ----c--------CHHHHHHHHHHHHHHHHHHhhcCCcEEEEECCcHHHHHHHHH---hCCCceEeecchHheecHHHhc
Confidence 0 11112444566666 57778899999999999776555554 3468999999999999988774
Q ss_pred CcCccccceeEEcCCCCCcccHHHHHHHHhcCCeE-EEeCCCCCCChhhhhcCCCCcccCcc--hHHHHHHHHHHHHHhc
Q 009410 328 HSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPN--GIEERMHLVWDTMVES 404 (535)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~--g~~~~l~~~~~~~~~~ 404 (535)
... .+..++++||+|...+++++++.+..|.+. +++|||.|+....+.. +|. .++ |++..+++++. .+ .
T Consensus 212 ~~~--~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~---~~g-~~Gi~~~e~~l~l~~~-~~-~ 283 (347)
T 2z26_A 212 VGG--VRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES---SCG-CAGCFNAPTALGSYAT-VF-E 283 (347)
T ss_dssp TTS--BCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS---SSB-CCCCCCTTTHHHHHHH-HH-H
T ss_pred CcC--CCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcC---CCC-CCCcCcHHHHHHHHHH-Hh-h
Confidence 322 356889999999999999999999999988 8999999998776643 333 222 55878888775 44 3
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCC-CCeeEeeEEE
Q 009410 405 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY-EGRRVKGKVE 476 (535)
Q Consensus 405 ~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~-~~~~~~~~v~ 476 (535)
+++|++++++..|.|||++||+.+++|+| +|+ +..|.++.+++.++..|+|| +|+.+.++|.
T Consensus 284 ~~~sl~~~v~~~s~nPAki~gl~~~kG~i--------~l~--~~~~~v~~~~~~s~~~~sPf~~G~~l~g~v~ 346 (347)
T 2z26_A 284 EMNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAESIALTDDTLVPFLAGETVRWSVK 346 (347)
T ss_dssp HTTCGGGHHHHHHTHHHHHHTCCCCCCEE--------EEE--CCCEECCSCEECSSSEECCTTTTCEESCEEC
T ss_pred cCCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEE--cceEEEchhhccccCCcccccCCcEEEeEEe
Confidence 46899999999999999999996567875 677 66799999999999999999 7998888774
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=254.61 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=85.4
Q ss_pred EEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc--cCCCCchhhhHHHH
Q 009410 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMGSETIDDFFSGQ 131 (535)
Q Consensus 55 ~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~--~~g~~~~~~~~~~~ 131 (535)
++|+|++|++++.. .+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|.... +....+.+.+....
T Consensus 5 ~~i~n~~i~~~~~~~~~~~i~I~dG~I~~i~~~~~~~~~~~viD~~G~~v~PGfID~HvHg~~G~~~~d~~~~e~l~~~~ 84 (381)
T 3iv8_A 5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETIDTMH 84 (381)
T ss_dssp EEEEEEEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCEEEEEEEEEEEECEEEEEECEETTEETTTSCSHHHHHHHH
T ss_pred EEEEccEEEcCCCeEeccEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEccCeEeeeecccCCCCCCCCCCHHHHHHHH
Confidence 69999999998765 4679999999999999865545568899999999999999999997643 22334677888888
Q ss_pred HHHHhCCcEEEeccccCCCC-ChHHHHHHHHHH
Q 009410 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163 (535)
Q Consensus 132 ~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~ 163 (535)
+.++++|||+++.+....+. ...+.++.+.+.
T Consensus 85 ~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~~ 117 (381)
T 3iv8_A 85 KANLKSGCTSFLPTLITSSDENMRQAIAAAREY 117 (381)
T ss_dssp HHHHHTTEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999987544433 345555544443
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=289.54 Aligned_cols=371 Identities=16% Similarity=0.133 Sum_probs=206.9
Q ss_pred CcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCC----------CCCCCCceEEecCCCEEeecccccccccccccCC
Q 009410 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN----------INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~----------~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g 120 (535)
...|++|+|++|+|+.++..++|+|+||||++||+. ...++++++||++|++|+|||||+|+|+..+ +
T Consensus 63 ~~~DlvI~Na~Ivd~~Gi~kaDIlIkDGrIaaIG~ag~pd~~d~vdl~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~--~ 140 (566)
T 4ep8_C 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICP--Q 140 (566)
T ss_dssp GSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECEEEEEEECSCT--T
T ss_pred CCCCEEEECcEEECCCCeEEeEEEEECCEEEEeecCCCcccccccccccCCCCEEEECCCCEEEcCEEEecccccCC--C
Confidence 368999999999999888899999999999999963 2235689999999999999999999999866 2
Q ss_pred CCchhhhHHHHHHHHhCCcEEEeccccC-------C-CCChHHHHHHHHHHhcccccccceeeeeecCChhhHHHHHHHH
Q 009410 121 SETIDDFFSGQAAALAGGTTMHIDFVIP-------I-NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (535)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (535)
. .......+.++....... . ....................+++++........ .....+.
T Consensus 141 ~---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~ 208 (566)
T 4ep8_C 141 Q---------AEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQP---DALREQV 208 (566)
T ss_dssp H---------HHHHHHHTEEEEEEECSSSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCH---HHHHHHH
T ss_pred c---------cchhhhhhHHHHhhCceEEEEecCCCCCchHHHHHHHHHHhccccceeeeeecccccccc---hhhHHHh
Confidence 1 112233455544322111 1 113444455555555556666666655444332 2233333
Q ss_pred HHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHH
Q 009410 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272 (535)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 272 (535)
..+...++.+..+ .............+...+.....|...........+.....+......+....+.......+
T Consensus 209 -~a~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (566)
T 4ep8_C 209 -AAGVIGLKIHEDW----GATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDI 283 (566)
T ss_dssp -HHTCSEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTG
T ss_pred -hhccccccccccc----cccchhhhhHhHHHHHhcchhhhhhhhHHHHHHHHhhHhhccCccccccccccchhHHHHHH
Confidence 5677888776554 34667778888888888999999985543322222222222222211111111111111111
Q ss_pred HHHHHHHHhcCCCEEEEEccCHHHH-HHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHH
Q 009410 273 TRAIRLAEFVNTPLYVVHVMSMDAM-EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (535)
Q Consensus 273 ~~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (535)
.+..........+.+..|....... +.+.... ..+++..+..... ...+. .. .......
T Consensus 284 ~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~----------~~h~l~~~~~~~~-------~~~~~--~~-~~~~~~~ 343 (566)
T 4ep8_C 284 ITACAHPNILPSSTNPTLPYTLNTIDEHLDMLM----------VCHHLDPDIAEDV-------AFAES--RI-RRETIAA 343 (566)
T ss_dssp GGGGGCTTEEEEECSTTSSCBTTHHHHHHHHHH----------HHHTCCTTCHHHH-------HHHHH--HC-CHHHHHH
T ss_pred HHHHHHHhhcCCceeehhHHHHHHhhcccceEE----------EeecccCChhhHH-------hhccC--CC-cccchHH
Confidence 1111111100000001111111111 1111111 1111111111100 00000 00 0111233
Q ss_pred HHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcch---HHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCC
Q 009410 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG---IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 428 (535)
Q Consensus 352 ~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g---~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~ 428 (535)
...++..|....+++|+.+....... +...+.+ ....+..+........+++++++|+++|+|||++||+++
T Consensus 344 ~~~l~~~G~~~~i~sD~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~d 418 (566)
T 4ep8_C 344 EDVLHDLGAFSLTSSDSQAMGRVGEV-----ILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAH 418 (566)
T ss_dssp HHHHHHHTSSCEECCCTTSSSCTTCH-----HHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTT
T ss_pred HHHHHhCCCcceEeeccccccccccc-----ccccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 55677789999999998876544321 0000100 000000001111234568999999999999999999999
Q ss_pred CCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 429 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 429 ~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
++|+|++||+|||||||++++ .-++.+|+++|.+||-
T Consensus 419 ~iGSIevGK~ADLVL~Dp~~f----------------------~vkP~~v~~~G~iv~a 455 (566)
T 4ep8_C 419 EVGSIEVGKLADLVVWSPAFF----------------------GVKPATVIKGGMIAIA 455 (566)
T ss_dssp TSSSSCTTSBCCEEEECGGGT----------------------TTSCSEEEETTEEEEE
T ss_pred CCcCCCCCCCCCEEEECcccc----------------------CCCeeEEeeCCEEEEc
Confidence 999999999999999997643 1378899999999995
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=256.88 Aligned_cols=354 Identities=16% Similarity=0.190 Sum_probs=187.7
Q ss_pred cccEEEEccEEEcCCC---ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCC---Cchh
Q 009410 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---ETID 125 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~---~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~---~~~~ 125 (535)
+.+++|+|++|+|++. .++++|+|+||||++|++....++++++||++|++|+|||||+|+|+....... ....
T Consensus 3 M~~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~~~~~~~~~vID~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~ 82 (426)
T 3mkv_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP 82 (426)
T ss_dssp CCEEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHTTSC
T ss_pred cCcEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCCCCCCCCCEEEECCCCEEEeChhhhhhCcccccCCcccccccc
Confidence 4579999999999875 367899999999999999877677899999999999999999999987651110 0001
Q ss_pred hh------HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhccccccc---cee----------------------
Q 009410 126 DF------FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDY---GFH---------------------- 174 (535)
Q Consensus 126 ~~------~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------- 174 (535)
.. ..........++|+....... . .........+....... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (426)
T 3mkv_A 83 NVLVTLRAVPIMRAMLRRGFTTVRDAGGA----G-YPFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSP 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEECSSC----C-HHHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSSS
T ss_pred hhHHHHHHHhhhhhhhccccccccccccc----c-hhhhhHhhccceeeceeccccccccccccccchhhhhhccccccc
Confidence 11 111223456777777644221 1 11111111111100000 000
Q ss_pred ----------eeeecCChhhHHHHHHHHHHcCCCEEEEEeec--------CCCCcCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009410 175 ----------MAITKWDEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (535)
Q Consensus 175 ----------~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 236 (535)
........+......... ..+.......... ......+.......+..+...+.....+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
T 3mkv_A 158 CGCCVRVGALGRVADGVDEVRRAVREEL-QMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAY 236 (426)
T ss_dssp CSSBCCTTCSEEECCSHHHHHHHHHHHH-HHTCSSEEEECBCCSSCSSCCTTSBCSCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred cchhhhhccccccccCHHHHHHHHHHHh-hcccccccccccccccccccccccchhhHHHHHHHHHHHHhcccceeehhh
Confidence 000000112222333333 3444444333221 122344567777777888888888777776
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEecccc
Q 009410 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (535)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~ 316 (535)
......... ..+.. ... +...... .........+......+..
T Consensus 237 ~~~~~~~~~----~~~~~-------------------------------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 279 (426)
T 3mkv_A 237 TPAAIARAV----RCGVR-------------------------------TIE-HGNLIDD-ETARLVAEHGAYVVPTLVT 279 (426)
T ss_dssp SHHHHHHHH----HTTCC-------------------------------EEE-ECTTCCH-HHHHHHHHHTCEEECCHHH
T ss_pred hhhhHHHHH----hhccc-------------------------------ccc-ccccccc-hhhhhhhhcCccccccccc
Confidence 543322221 11211 111 1111000 1112222222222111110
Q ss_pred ceEeeCcccccCcCccccceeEEcCC--CCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHH
Q 009410 317 SGLVLDDSWLWHSDFVTAAKYVMSPP--IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERM 394 (535)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l 394 (535)
.......... .+......+. ............+...|+.+.+++|..+...... ...
T Consensus 280 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~d~~~~~~~~~---------------~~~ 338 (426)
T 3mkv_A 280 YDALASEGEK------YGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRLQ---------------SDE 338 (426)
T ss_dssp HHHHHHHTTT------TTCCHHHHTTHHHHHTTHHHHHHHHHHHTCCBCCCCCCCGGGGGGT---------------THH
T ss_pred hhhhhhhhhh------ccccccccccccccccccchhhHHhhhcCceeeeccCCcccccchH---------------HHH
Confidence 0000000000 0000000000 0000112346678888999999999654332211 011
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeE
Q 009410 395 HLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGK 474 (535)
Q Consensus 395 ~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~ 474 (535)
.. ++ ..++|++|||+++|.|||++||+++++|+|++||+|||||+|.||..+++. +... ..+
T Consensus 339 ~~----~~-~~gls~~eal~~~T~~pA~~lgl~~~~Gsi~~G~~ADlvvlD~dPl~di~~-----------~~~~--~~~ 400 (426)
T 3mkv_A 339 FR----IL-AEVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDC-----------LLGQ--GEH 400 (426)
T ss_dssp HH----HH-HTTSCHHHHHHHTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCSTT-----------TCSS--STT
T ss_pred HH----HH-HhCCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCcceEEEECCChHHhHHH-----------HhCC--CCC
Confidence 11 12 346999999999999999999998889999999999999999987644421 1111 236
Q ss_pred EEEEEECCEEEEE
Q 009410 475 VEVTIAGGRVVWE 487 (535)
Q Consensus 475 v~~v~~~Gr~V~~ 487 (535)
|++||++||+|++
T Consensus 401 v~~Vi~~G~vv~~ 413 (426)
T 3mkv_A 401 IPLVMKDGRLFVN 413 (426)
T ss_dssp CCEEEETTEEEEE
T ss_pred ccEEEECCEEEEC
Confidence 8999999997654
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=225.04 Aligned_cols=323 Identities=17% Similarity=0.144 Sum_probs=167.1
Q ss_pred eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccC
Q 009410 69 QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (535)
Q Consensus 69 ~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~ 148 (535)
++++|+|+||+|++|++ + + || +|++|+|||||+|+|+... +......+....++++++||||++|+...
T Consensus 28 ~~~~V~I~~g~I~~vg~------~-~-iD-~g~~v~PGlID~H~H~~~~--~~~~~~~l~~~~~~~l~~GvTtv~d~~~~ 96 (376)
T 1o12_A 28 FTGDVEIEEGKIVKVEK------R-E-CI-PRGVLMPGFVDPHIHGVVG--ADTMNCDFSEMEEFLYSQGVTTFLATTVS 96 (376)
T ss_dssp EEEEEEEETTEEEEEEE------C-C-SC-CSSEEEECEEEEEECEETT--EETTTTCHHHHHHHHHTTTEEEEEEECCS
T ss_pred cCceEEEECCEEEEeCC------C-c-cC-CCCEEccCeEEEeecCCCC--CCCChhhHHHHHHHHHhCCcEEEEeccCC
Confidence 68999999999999986 1 4 99 9999999999999999765 21111236677888999999999998644
Q ss_pred CCC-ChHHHHHHHHHHhcc--cccccceeeeeec--------CChhhHHHH-HHHHHHcCCCEEEEE-eecCCCCcCCHH
Q 009410 149 ING-SLTAGFEAYEKKAKN--SCMDYGFHMAITK--------WDEVVSDEM-EVMVKEKGINSFKFF-MAYKGSFMINDE 215 (535)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~g~~~ik~~-~~~~~~~~~~~~ 215 (535)
.+. ...+.++...+.... .....+.+...+. ...+..... .+..+.. .+.++.. ..+.. ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~i~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pe~----~~~ 171 (376)
T 1o12_A 97 TSLEKMKEILRKARDYILENPSTSLLGVHLEGPYISKEKKGAHSEKHIRPPSERELSEI-DSPAKMLTFAPEI----ESS 171 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCSEEEEEEECSSSCGGGCTTSCTTTCCCCCHHHHTTC-CTTEEEEEECTTS----TTG
T ss_pred CCHHHHHHHHHHHHHHhhccCCCceEEEEEEcCcCCcccCCCCCHHHhcCCCHHHHHHh-hCCeEEEEEccCC----ccH
Confidence 221 122223322222211 1001111111100 011111111 1222121 2223332 22111 111
Q ss_pred HHHHHHHHHHhcCCeEEE-EcCChhhHHHHHHHHHHcCCCCccccc-ccCChhh-HHHHHHHHHHHHHhcCCCE---EEE
Q 009410 216 LLIEGFKRCKSLGALAMV-HAENGDAVFEGQKRMIELGITGPEGHA-LSRPPLL-EGEATTRAIRLAEFVNTPL---YVV 289 (535)
Q Consensus 216 ~l~~~~~~a~~~g~~v~~-H~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~ 289 (535)
++++.|++.|+++++ |+.... +..+.+.+.|...+.+.. ...+... +..-+..++. ...+ .+.
T Consensus 172 ---~~i~~A~~~g~~v~igH~~~~~---~~i~~a~~~G~~~itH~~~~~~~~~~~~~g~~~~~l~-----~~~~~~~~~~ 240 (376)
T 1o12_A 172 ---ELLLRLVKRDIVLSAGHSIATF---EEFMKFYKEGVKRITHFPNGLKPLHHREIGITGAGLL-----LDDVKLELIC 240 (376)
T ss_dssp ---GGGGGGGGGTCEEEECSBCCCH---HHHHHHHTTTCCEESSTTTTBCCCCSSCCHHHHHHHH-----CTTCEEEEEC
T ss_pred ---HHHHHHHHCCCEEEeecCccCH---HHHHHHHHCCCCeEEecccCcCChhhcccchhhhhhc-----CCcceEEEeC
Confidence 578899999999998 985431 223334455554332111 0111100 0000111111 1122 234
Q ss_pred EccCHHHHHHHHHHHHc-CCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEE--e-
Q 009410 290 HVMSMDAMEEIAKARKA-GQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLV--G- 365 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~l--g- 365 (535)
|+..... +.++.+.+. +.. ..++.++.... .....+ .+ ...|+++.+ |
T Consensus 241 ~~~~~~p-~~~~~~~~~~g~~-~~~~~sd~~~~-------~g~~~g-~~------------------~~~g~~~~~~~g~ 292 (376)
T 1o12_A 241 DGVHLSR-EMVKLVYKVKKAN-GIVLVTDSISA-------AGLKDG-TT------------------TLGDLVVKVKDGV 292 (376)
T ss_dssp SSSSSCH-HHHHHHHHHHTGG-GEEEECCBCTT-------TTSCSC-EE------------------ESSSSEEEEETTE
T ss_pred CCcCcCH-HHHHHHHhhCCCC-CEEEecCchhh-------cCCCCe-eE------------------EECCeEEEEeCCe
Confidence 5543332 445555444 432 11122111000 000000 01 011223332 1
Q ss_pred ---CCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEE
Q 009410 366 ---TDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 442 (535)
Q Consensus 366 ---tD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlv 442 (535)
+|+...... ..+...++.+++..+++++++++++|.|||++||++++ |+|++||.||||
T Consensus 293 ~~~~~g~~~g~~-----------------~~l~~~l~~~~~~~~~~~~~~l~~~T~~~A~~lgl~~~-G~i~~G~~ADlv 354 (376)
T 1o12_A 293 PRLEDGTLAGST-----------------LFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLDDR-GRIAEGTRADLV 354 (376)
T ss_dssp EECTTSCBCCBC-----------------CCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTS-SCCSTTSBCCEE
T ss_pred EEeCCCcccccc-----------------cCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCC-ccCCCCCcCCEE
Confidence 221111110 12333343444456799999999999999999999655 999999999999
Q ss_pred EEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECC
Q 009410 443 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 489 (535)
Q Consensus 443 vld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~ 489 (535)
|+|.+ .+|..||++|++||+++
T Consensus 355 ~~d~~-------------------------~~v~~v~~~G~~v~~~~ 376 (376)
T 1o12_A 355 LLDED-------------------------LNVVMTIKEGEVVFRSR 376 (376)
T ss_dssp EECTT-------------------------CCEEEEEETTEEEEEC-
T ss_pred EECCC-------------------------CCEEEEEECCEEEeecC
Confidence 99965 37999999999999875
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-15 Score=112.09 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=56.7
Q ss_pred cccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEEeecccccccccccc
Q 009410 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAME 117 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~vlPGlID~H~H~~~~ 117 (535)
..+++|+|++|++++. ...++|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+..+
T Consensus 3 ~~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~p 73 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHVIRG 73 (81)
T ss_dssp CCSEEEESSEEECSCTTCSEESEEEEETTEEEEEESGGGGGGCCTTCEEEECTTCEEEECCCCTTEEEECC
T ss_pred cCCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCchHhcccCCCCEEEECCCCEEeeCeEeeeeCCCCc
Confidence 3679999999999775 3678999999999999985432 3457899999999999999999999887
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.8e-10 Score=106.12 Aligned_cols=257 Identities=15% Similarity=0.113 Sum_probs=131.1
Q ss_pred cccccccccccccCC--------CCchhhhHHHHHHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhcccccccce---
Q 009410 106 GGIDPHTHLAMEFMG--------SETIDDFFSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGF--- 173 (535)
Q Consensus 106 GlID~H~H~~~~~~g--------~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 173 (535)
|+||+|+|+...... ....+........+.+.|||+++++..... .......+...+.+.+.+...++
T Consensus 6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~ 85 (291)
T 1bf6_A 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 85 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccC
Confidence 999999999753100 011223344556677899999998864312 12333333222222122222222
Q ss_pred --eeee-ecCChh-hHHHHHHHHHHcCC-------CEEE-EEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009410 174 --HMAI-TKWDEV-VSDEMEVMVKEKGI-------NSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (535)
Q Consensus 174 --~~~~-~~~~~~-~~~~~~~~~~~~g~-------~~ik-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 241 (535)
+... .....+ ..+.+.+.. ..|+ ..++ +..++.+......+.+++.++.|++.|+++.+|++.....
T Consensus 86 ~~hP~~~~~~~~~~l~~~~~~~l-~~gi~~~~~~~~~iGe~gld~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~~~ 164 (291)
T 1bf6_A 86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 164 (291)
T ss_dssp GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSH
T ss_pred ccCcHhhhcCCHHHHHHHHHHHH-HhccCCcCcceeeEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCCCh
Confidence 1100 001111 122333333 2232 2332 2233222111123568889999999999999999532111
Q ss_pred HHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcC---CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccce
Q 009410 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN---TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (535)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 318 (535)
.+.+ ++..+.+ .++++.|+......+.+..+.+.|+.+..+....
T Consensus 165 ~~~~-------------------------------~~l~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~- 212 (291)
T 1bf6_A 165 LEQL-------------------------------ALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK- 212 (291)
T ss_dssp HHHH-------------------------------HHHHHTTCCGGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTC-
T ss_pred HHHH-------------------------------HHHHHcCCCchhEEEECCCCCCCHHHHHHHHHCCCEEEEccCcc-
Confidence 1222 2222222 3567899954222367777888898887653210
Q ss_pred EeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHH
Q 009410 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHL 396 (535)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 396 (535)
. . .++ .......++++++.| -+++++||... ...... ... ++....+..
T Consensus 213 --------------~-~----~~~--~~~~~~~~~~~~~~~~~dril~~TD~p~-~~~~~~-----~~~--~~~~~~~~~ 263 (291)
T 1bf6_A 213 --------------N-S----YYP--DEKRIAMLHALRDRGLLNRVMLSMDITR-RSHLKA-----NGG--YGYDYLLTT 263 (291)
T ss_dssp --------------T-T----TSC--HHHHHHHHHHHHHTTCGGGEEECCCCCS-GGGSGG-----GTS--CCTTHHHHT
T ss_pred --------------c-C----CCC--HHHHHHHHHHHHHhCCCCeEEEcCCCCC-Cccchh-----cCC--CCHHHHHHH
Confidence 0 0 001 011235578888887 66899999642 111100 000 011112233
Q ss_pred HHHHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 397 VWDTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 397 ~~~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
.+..+ ...|+|.+++.+..|.||+++||
T Consensus 264 ~~~~l-~~~g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 264 FIPQL-RQSGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp HHHHH-HHTTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHH-HHcCCCHHHHHHHHHHhHHHHhC
Confidence 33333 34569999999999999999985
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-09 Score=103.73 Aligned_cols=275 Identities=13% Similarity=0.038 Sum_probs=134.5
Q ss_pred cccccccccccccCCC--Cch------hhhHH----HHHHHHhCCcEEEeccccCCC-CChHHHHHHHHHHhc-cccccc
Q 009410 106 GGIDPHTHLAMEFMGS--ETI------DDFFS----GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDY 171 (535)
Q Consensus 106 GlID~H~H~~~~~~g~--~~~------~~~~~----~~~~~l~~GvTtv~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 171 (535)
||||+|+|+....... ..+ ++... .+..+.+.|||++++...... .......+ ..+..+ ..+...
T Consensus 16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~~~-la~~~~~~i~~~~ 94 (330)
T 2ob3_A 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE-VSRAADVHIVAAT 94 (330)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHH-HHHHHTCEEECEE
T ss_pred CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHHHH-HHHHhCCcEEEEe
Confidence 9999999997631111 011 22222 256678999999998864321 22333333 333222 334445
Q ss_pred ceee--e-ee-cCChhhH-HHHHHHHHH--c----CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcC--Ch
Q 009410 172 GFHM--A-IT-KWDEVVS-DEMEVMVKE--K----GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE--NG 238 (535)
Q Consensus 172 ~~~~--~-~~-~~~~~~~-~~~~~~~~~--~----g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~--~~ 238 (535)
|+|. + .. ..+.+.. +.+.+.... . .+..+++.++ ........+.+++.++.|++.|+++.+|+. +.
T Consensus 95 G~hp~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld-~~~~~~q~~~f~~q~~lA~~~glPv~iH~~~~~r 173 (330)
T 2ob3_A 95 GLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATT-GKATPFQELVLKAAARASLATGVPVTTHTAASQR 173 (330)
T ss_dssp ECCSCCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECS-SSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGT
T ss_pred cCCcCCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCeEEEECCCCCC
Confidence 5553 1 10 0111112 223222211 1 3455566555 211111234488899999999999999995 22
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc-CHHHHHHHHHHHHcCCcEEeccccc
Q 009410 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVS 317 (535)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~g~~v~~~~~~~ 317 (535)
... +.++.+.+.|.. ..++.+.||. +.+. +....+.+.|+.+..+....
T Consensus 174 ~a~-e~l~iL~~~g~~----------------------------~~~~~i~H~f~~~~~-e~a~~~~~~G~~i~~~~~G~ 223 (330)
T 2ob3_A 174 DGE-QQAAIFESEGLS----------------------------PSRVCIGHSDDTDDL-SYLTALAARGYLIGLDHIPY 223 (330)
T ss_dssp HHH-HHHHHHHHTTCC----------------------------GGGEEECSGGGCCCH-HHHHHHHHTTCEEEECCTTC
T ss_pred CHH-HHHHHHHHcCcC----------------------------cccEEEeCCCCCCCH-HHHHHHHhCCCEEEeCCCcc
Confidence 222 333322222211 1134678997 4544 77888888998776542100
Q ss_pred eEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCC-CChh----hhhcCCCCcccCcchH
Q 009410 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCA-FNST----QKAFGIDDFRKIPNGI 390 (535)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~-~~~~----~~~~~~~~~~~~~~g~ 390 (535)
..+...... .... .. ..++ .......++++++.| -+++++||... .... .... -.+.|++.
T Consensus 224 -~tf~~~~~~--~~~~-~~--~~~~--~~~~~~~l~~~~~~~p~drilleTD~p~~l~~~~~~~g~~~----~~n~pn~~ 291 (330)
T 2ob3_A 224 -SAIGLEDNA--SASA-LL--GIRS--WQTRALLIKALIDQGYMKQILVSNDWTFGFSSYVTNIMDVM----DRVNPDGM 291 (330)
T ss_dssp -CCTTCTTCH--HHHH-HH--CSSC--HHHHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHH----HHHCTTGG
T ss_pred -ccccccccc--cccc-cc--cCCC--HHHHHHHHHHHHHhCCCCeEEEeCCCCCCcccccccCCCcc----cccCCCCc
Confidence 000000000 0000 00 0000 001124478888888 77899999532 1110 0000 00111111
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 391 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 391 ~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
...+...+..+.+ .|+|++++.++.|.||+++|+
T Consensus 292 ~~~~~~~ia~l~~-~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 292 AFIPLRVIPFLRE-KGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp GHHHHTHHHHHHH-TTCCHHHHHHHHTHHHHHHHS
T ss_pred chHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhc
Confidence 1112222223333 579999999999999999997
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-08 Score=92.44 Aligned_cols=243 Identities=16% Similarity=0.113 Sum_probs=129.3
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee-cCChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (535)
+||+|+|+... . ...+.......+.++||++++.++... ...... ....+..+..+..+|++.... ....+..
T Consensus 5 ~iD~H~Hl~~~--~--~~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~-~~l~~~~~~~~~~~G~hP~~~~~~~~~~~ 78 (259)
T 1zzm_A 5 FIDTHCHFDFP--P--FSGDEEASLQRAAQAGVGKIIVPATEA-ENFARV-LALAENYQPLYAALGLHPGMLEKHSDVSL 78 (259)
T ss_dssp EEESCBCTTST--T--TTTCHHHHHHHHHHTTEEEEEEECCSG-GGHHHH-HHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEeeecCCch--h--hccCHHHHHHHHHHcCCCEEEEecCCH-HHHHHH-HHHHHhCCCeEEEEEecccccccCCHHHH
Confidence 89999999764 1 122334446778899999998774332 122222 223333333223333333211 1123445
Q ss_pred HHHHHHHHH--cCCCEEE-EEeecCCCC---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009410 186 DEMEVMVKE--KGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 186 ~~~~~~~~~--~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (535)
+++.++... .+..+++ +.+++.... ....+.++..++.|.++|+++.+|+.... .+..+
T Consensus 79 ~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~--~~~~~------------- 143 (259)
T 1zzm_A 79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAM------------- 143 (259)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH--HHHHH-------------
T ss_pred HHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccH--HHHHH-------------
Confidence 667666643 2333332 223432111 12245788999999999999999985431 11221
Q ss_pred cccCChhhHHHHHHHHHHHHHhcC--CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
+.++.+ .++ +.|+..... +.+..+.+.|+.+....... +..
T Consensus 144 ------------------il~~~~~~~~~-i~H~~~g~~-~~~~~~~~~g~~i~~~g~~~-------------~~~---- 186 (259)
T 1zzm_A 144 ------------------HLKRHDLPRTG-VVHGFSGSL-QQAERFVQLGYKIGVGGTIT-------------YPR---- 186 (259)
T ss_dssp ------------------HHHHHCCTTCE-EETTCCSCH-HHHHHHHHTTCEEEECGGGG-------------CTT----
T ss_pred ------------------HHHhcCCCCCE-EEEcCCCCH-HHHHHHHHCCCEEEECceee-------------ccc----
Confidence 122222 234 449866553 66677777887766442210 000
Q ss_pred EEcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~ 415 (535)
. ..++++++. .-+++++||++ +.... ++..-++.. ..+...+..+.+..|+|.+++.+.
T Consensus 187 --------~---~~~~~~~~~~~~dril~eTD~P-~~~p~------~~~g~~~~p-~~l~~~~~~la~~~g~~~e~~~~~ 247 (259)
T 1zzm_A 187 --------A---SKTRDVIAKLPLASLLLETDAP-DMPLN------GFQGQPNRP-EQAARVFAVLCELRREPADEIAQA 247 (259)
T ss_dssp --------T---CSHHHHHHHSCGGGEEECCCBT-SSCCT------TCTTSCCCG-GGHHHHHHHHHHHCSSCHHHHHHH
T ss_pred --------c---HHHHHHHHhCCHHHEEEecCCC-CccCC------CCCCCCCcH-HHHHHHHHHHHHHHCcCHHHHHHH
Confidence 0 113444443 25689999953 32111 121111100 123333334444557999999999
Q ss_pred HhHHHHHHcCC
Q 009410 416 TSTECARIFNV 426 (535)
Q Consensus 416 ~T~~~A~~lgl 426 (535)
.|.|++++|++
T Consensus 248 ~~~Na~rl~~l 258 (259)
T 1zzm_A 248 LLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 99999999987
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=98.40 Aligned_cols=264 Identities=14% Similarity=0.095 Sum_probs=130.8
Q ss_pred cccccccccccccCCC--Cc-h-----hhhHHH---HHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcccccccce
Q 009410 106 GGIDPHTHLAMEFMGS--ET-I-----DDFFSG---QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173 (535)
Q Consensus 106 GlID~H~H~~~~~~g~--~~-~-----~~~~~~---~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (535)
||||+|+|+....... .. . ++.... ...+.++|||+++++...... ......+...+.+.+.+...|+
T Consensus 17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~ 96 (314)
T 2vc7_A 17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGI 96 (314)
T ss_dssp CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEB
T ss_pred CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeec
Confidence 9999999997631010 00 1 122222 355778999999988644222 2333333323222233344444
Q ss_pred eeeee--cCC-hhhHHHHHHHHH---HcCCC-------EEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC--h
Q 009410 174 HMAIT--KWD-EVVSDEMEVMVK---EKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN--G 238 (535)
Q Consensus 174 ~~~~~--~~~-~~~~~~~~~~~~---~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~--~ 238 (535)
+.... ... ....+++.++.. ..|.. .+++.+++.+......+.+++.++.|++.|+++.+|+.. .
T Consensus 97 hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~~~~~~q~~~~~~~~~lA~~~~~pv~iH~~~~~~ 176 (314)
T 2vc7_A 97 YIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNN 176 (314)
T ss_dssp CCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTTCSCHHHHHHHHHHHHHHHHHCCCEEEECCTTTT
T ss_pred CCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHHCCEEEEeCCCccc
Confidence 44221 110 112334433332 22322 245545554322222456788999999999999999952 2
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccce
Q 009410 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (535)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 318 (535)
.. .+.++.+.+.|.. ..++.+.|+......+.+..+.+.|+.+..+....
T Consensus 177 ~~-~~~~~~l~~~~~~----------------------------~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~- 226 (314)
T 2vc7_A 177 TG-LEQQRILTEEGVD----------------------------PGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGL- 226 (314)
T ss_dssp HH-HHHHHHHHHTTCC----------------------------GGGEEETTGGGCCCHHHHHHHHHTTCEEEECCTTC-
T ss_pred Ch-HHHHHHHHHcCCC----------------------------cccEEEECCCCCCCHHHHHHHHHcCCEEEEeCCCc-
Confidence 21 2222222222211 12456789865222367777888898776552110
Q ss_pred EeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCC-hhhhhcCCCCcc---cCcc-hHH
Q 009410 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFN-STQKAFGIDDFR---KIPN-GIE 391 (535)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~-~~~~~~~~~~~~---~~~~-g~~ 391 (535)
. .+ .........+.++++. +-++.++||....+ .... +++. ..++ +..
T Consensus 227 -----~-----~~-----------~~~~~~~~~i~~~~~~g~~drilleTD~~~~~~~~~~----~p~~~~~g~~~~~~~ 281 (314)
T 2vc7_A 227 -----D-----LF-----------LPVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTA----KPEYKPKLAPRWSIT 281 (314)
T ss_dssp -----T-----TT-----------SCHHHHHHHHHHHHHTTCTTTEEECCCCBSSBCCGGG----CTTSHHHHCTTCSTT
T ss_pred -----c-----cC-----------CCHHHHHHHHHHHHHcCCCCeEEEcCCcccccccccc----chhhhhcCCCCcCHH
Confidence 0 00 0001112345566665 46689999963211 0000 0110 0000 000
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 392 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 392 ~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
..+......+ ...|++.+++.+..|.||+++|+
T Consensus 282 ~~~~~~~~~l-~~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 282 LIFEDTIPFL-KRNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp HHHHTHHHHH-HHTTCCHHHHHHHHTHHHHHHTC
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHhC
Confidence 1122222223 34579999999999999999985
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-07 Score=86.61 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=130.2
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc-ccccccceeeee-ec----
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAI-TK---- 179 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---- 179 (535)
++||+|+|+... . ...+.......+.++||++++++.... .......+ ..+..+ +.+..+|++... ..
T Consensus 5 ~~iD~H~Hl~~~--~--~~~~~~~~l~~~~~~Gv~~~v~~~~~~-~~~~~~~~-l~~~~~~~i~~~~GihP~~~~~~~~~ 78 (272)
T 2y1h_A 5 GLVDCHCHLSAP--D--FDRDLDDVLEKAKKANVVALVAVAEHS-GEFEKIMQ-LSERYNGFVLPCLGVHPVQGLPPEDQ 78 (272)
T ss_dssp CEEEEEECTTSG--G--GTTTHHHHHHHHHHTTEEEEEECCSSG-GGHHHHHH-HHHHTTTTEEEEECCCSBC-------
T ss_pred cEEEEeeCCCch--h--hhcCHHHHHHHHHHCCCCEEEEeCCCH-HHHHHHHH-HHHHCCCCEEEEEEECCCcccccccc
Confidence 599999999754 1 122344446778899999999874332 12222232 333333 233344554422 11
Q ss_pred --CChhhHHHHHHHHHH--cCCCEEEE-EeecCCCC-------cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009410 180 --WDEVVSDEMEVMVKE--KGINSFKF-FMAYKGSF-------MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (535)
Q Consensus 180 --~~~~~~~~~~~~~~~--~g~~~ik~-~~~~~~~~-------~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 247 (535)
...+..+++.+++.+ ..+.+++. .+++.... ....+.+++.++.|.++++++.+|+.... .+.+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~--~~~~-- 154 (272)
T 2y1h_A 79 RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAG--RPTI-- 154 (272)
T ss_dssp CBCCHHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCH--HHHH--
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcH--HHHH--
Confidence 122345556555532 34445542 23331111 11245788999999999999999986431 1111
Q ss_pred HHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcC-CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccc
Q 009410 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (535)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (535)
++.+..+ .++++ |+...+. +.++.+.+.|+.+......
T Consensus 155 -----------------------------~il~~~~~~~~v~-H~~~g~~-~~~~~~~~~g~~i~~~g~~---------- 193 (272)
T 2y1h_A 155 -----------------------------NLLQEQGAEKVLL-HAFDGRP-SVAMEGVRAGYFFSIPPSI---------- 193 (272)
T ss_dssp -----------------------------HHHHHTTCCSEEE-ETCCSCH-HHHHHHHHTTCEEEECGGG----------
T ss_pred -----------------------------HHHHhCCCCCEEE-EccCCCH-HHHHHHHHCCCEEEECCcc----------
Confidence 2222222 35555 9866543 6677777788776654321
Q ss_pred cCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhc
Q 009410 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVES 404 (535)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~ 404 (535)
.+ + ..++++.+.. -+++++||.+-.... . .-.+.|. .+...+..+...
T Consensus 194 ---------~~----~-------~~~~~~~~~~~~drll~eTD~P~~~p~-~-----g~~~~p~----~l~~~~~~la~~ 243 (272)
T 2y1h_A 194 ---------IR----S-------GQKQKLVKQLPLTSICLETDSPALGPE-K-----QVRNEPW----NISISAEYIAQV 243 (272)
T ss_dssp ---------GT----C-------HHHHHHHHHSCGGGEEECCCTTSSCSS-T-----TSCCCGG----GHHHHHHHHHHH
T ss_pred ---------cC----c-------HHHHHHHHhCCHHHEEEecCCCCCCCC-C-----CCcCcHH----HHHHHHHHHHHH
Confidence 00 0 1245555442 368999995422111 0 0011111 122222223233
Q ss_pred CCCCHHHHHHHHhHHHHHHcCCC
Q 009410 405 GQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 405 ~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.|++.+++.+..|.|++++|+++
T Consensus 244 ~g~~~e~~~~~~~~N~~~l~~~~ 266 (272)
T 2y1h_A 244 KGISVEEVIEVTTQNALKLFPKL 266 (272)
T ss_dssp HTSCHHHHHHHHHHHHHHHSTTH
T ss_pred HCcCHHHHHHHHHHHHHHHHHhH
Confidence 47999999999999999999984
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-07 Score=88.09 Aligned_cols=251 Identities=13% Similarity=0.063 Sum_probs=134.8
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcc----cccccceeeeeec-CC
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN----SCMDYGFHMAITK-WD 181 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~ 181 (535)
|||+|+|+... ...++.......+...||..++..+.... .... .....+..+. .+..+|+++.... ..
T Consensus 3 ~iD~H~HL~~~----~~~~d~~~vl~~a~~~gV~~~v~~g~~~~-~~~~-~~~la~~~~~~~~~v~~~~GiHP~~~~~~~ 76 (287)
T 3rcm_A 3 LIDIGVNLTNS----SFHDQQAAIVERALEAGVTQMLLTGTSLA-VSEQ-ALELCQQLDASGAHLFATAGVHPHDAKAWD 76 (287)
T ss_dssp EEEEEECTTCG----GGTTCHHHHHHHHHHTTEEEEEECCCSHH-HHHH-HHHHHHHHCTTSSSEEEEECCCGGGGGGCC
T ss_pred eEEEeecCCch----hcccCHHHHHHHHHHcCCeEEEEecCCHH-HHHH-HHHHHHhCCCCCceEEEEEEECcCccccCC
Confidence 89999999754 11234555577888999999885532211 1222 2222223332 3444555543221 23
Q ss_pred hhhHHHHHHHHHHcCCCEEE-EEeecCCCC---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcc
Q 009410 182 EVVSDEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~ 257 (535)
++..+.+.++++...+.++. +.+++.... ....+.+++.++.|.++++++.+|+.... .+.++.+.+.+
T Consensus 77 ~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~--~~~l~il~~~~----- 149 (287)
T 3rcm_A 77 TDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDAS--ERLLAILKDYR----- 149 (287)
T ss_dssp TTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHTTG-----
T ss_pred HHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCcH--HHHHHHHHHcC-----
Confidence 34566777766444444554 234543211 12356789999999999999999996431 12222111110
Q ss_pred cccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
....+. +.|+.+.+. +.++.+.+.|+.+...... . +
T Consensus 150 -----------------------~~~~~~-V~H~fsG~~-e~a~~~l~~G~yis~~g~i---------~----~------ 185 (287)
T 3rcm_A 150 -----------------------DHLTGA-VVHCFTGER-EALFAYLDLDLHIGITGWI---------C----D------ 185 (287)
T ss_dssp -----------------------GGCSCE-EECSCCCCH-HHHHHHHHTTCEEEECGGG---------G----C------
T ss_pred -----------------------CCCCeE-EEEeCCCCH-HHHHHHHHCCcEEEECchh---------c----c------
Confidence 001233 559876554 6677777788776654221 0 0
Q ss_pred EEcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcC-CCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFG-IDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVR 414 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~-~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~ 414 (535)
..+. ..++++++. --++++.||. |+........ ...-.+-|. .+...++.+.+..|++.+++.+
T Consensus 186 ----~k~~----~~l~~~v~~ip~drlLlETD~-P~l~p~~~~~~~rg~~n~P~----~l~~v~~~lA~~~g~s~eev~~ 252 (287)
T 3rcm_A 186 ----ERRG----THLHPLVGNIPEGRLMLESDA-PYLLPRSLRPKPKSGRNEPA----FLPEVLREVALHRGESAEHTAA 252 (287)
T ss_dssp ----TTTC----GGGHHHHTTSCTTSEEECCCT-TSCCCTTCSSCCTTCCCCGG----GHHHHHHHHHHHHTSCHHHHHH
T ss_pred ----ccCH----HHHHHHHHhcCCccEEEeccC-CccCccccccccCCCcCCHH----HHHHHHHHHHHHhCcCHHHHHH
Confidence 0000 114444444 2458999995 4332210000 000011122 2333343443444799999999
Q ss_pred HHhHHHHHHcCCC
Q 009410 415 LTSTECARIFNVY 427 (535)
Q Consensus 415 ~~T~~~A~~lgl~ 427 (535)
..|.|+.++||++
T Consensus 253 ~~~~N~~rlf~l~ 265 (287)
T 3rcm_A 253 HTTATARDFFQLP 265 (287)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999999984
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-07 Score=91.35 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=151.0
Q ss_pred cccccccccccccCC---------CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHH----hcccccccc
Q 009410 106 GGIDPHTHLAMEFMG---------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYG 172 (535)
Q Consensus 106 GlID~H~H~~~~~~g---------~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 172 (535)
|+..+|=|+...+.+ ....+.....+..+.+.|++|++|+.....+.....+....+. +-......|
T Consensus 21 G~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~is~~t~~~Gv~Iv~~TG 100 (363)
T 3ovg_A 21 GITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEIANAVKNLGGNVIMSTG 100 (363)
T ss_dssp CEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHHHHhcccCCcEEEEeCC
Confidence 777888887654210 1122333344556678999999999755444444455554444 333333334
Q ss_pred eeeeee-----c----C-ChhhHHHHHHHHHHcC-----------------CCEEEEEeecCCCCcCCHHHHHHHHHHHH
Q 009410 173 FHMAIT-----K----W-DEVVSDEMEVMVKEKG-----------------INSFKFFMAYKGSFMINDELLIEGFKRCK 225 (535)
Q Consensus 173 ~~~~~~-----~----~-~~~~~~~~~~~~~~~g-----------------~~~ik~~~~~~~~~~~~~~~l~~~~~~a~ 225 (535)
++.... . . .++..+.+..-+ ..| +..+|+..++........+.+++.++.|.
T Consensus 101 ~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~~t~~Q~~~f~aq~~~A~ 179 (363)
T 3ovg_A 101 FHKAKFYDKYSSWLAVVPTEEIVKMCVAEI-EEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSI 179 (363)
T ss_dssp CCCGGGSCTTTSHHHHSCHHHHHHHHHHHH-HTCCBTTTTSSSCCCBCSCCCCEEEEEEEETBEEHHHHHHHHHHHHHHH
T ss_pred CCcCcccccCcHhhhcCCHHHHHHHHHHHH-HhcccccccccccccCCCccCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 333211 0 0 122222222222 222 34578777765333334667899999999
Q ss_pred hcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHH-
Q 009410 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR- 304 (535)
Q Consensus 226 ~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~- 304 (535)
+.|+++.+|........+.++.+.+.|.. ..++.+.|+......+....+.
T Consensus 180 e~glPViiH~r~gr~a~d~l~iL~e~g~~----------------------------~~~vvi~H~~~~~~~~~a~~~l~ 231 (363)
T 3ovg_A 180 LTGCPILVHTQLGTMALEVAKHLIGFGAN----------------------------PDKIQISHLNKNPDKYYYEKVIK 231 (363)
T ss_dssp HHCCCEEEEEETTCSHHHHHHHHHHHTCC----------------------------GGGEEEECGGGSCCHHHHHHHHH
T ss_pred HhCCEEEEeCCCCCCHHHHHHHHHhcCCC----------------------------CCcEEEEcCCCCCCHHHHHHHHH
Confidence 99999999985321111333333222221 1246788997422224455555
Q ss_pred HcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC--eEEEeCCCCCCChhhhhcCCCC
Q 009410 305 KAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDD 382 (535)
Q Consensus 305 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~ 382 (535)
+.|..+..+.... ..+ . + .......++++++.|. ++.+.||.+ ........ +
T Consensus 232 ~~G~yI~f~g~~~-----------------~~~--~-~--~~~ra~~l~~lv~~~p~drILleTDap-~~~~l~~~---G 285 (363)
T 3ovg_A 232 ETGVTLCFDGPDR-----------------VKY--Y-P--DSLLAENIKYLVDKGLQKHITLSLDAG-RILYQRNY---G 285 (363)
T ss_dssp HHCCEEEECCTTC-----------------TTT--C-C--HHHHHHHHHHHHHTTCGGGEEECCCCC-SGGGSHHH---H
T ss_pred HCCcEEEECCeec-----------------ccc--C-C--hhHHHHHHHHHHHhcCCCeEEEeCCCC-CCcCCCCC---C
Confidence 7787765542210 000 0 0 0011245777888764 589999954 22211100 0
Q ss_pred ccc-C-cchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccE
Q 009410 383 FRK-I-PNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 441 (535)
Q Consensus 383 ~~~-~-~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADl 441 (535)
... . .++.. .+...+..+++..|+|.+++.++.|.||+++|++ +..+++.+||.-+-
T Consensus 286 ~~~g~~~n~p~-~l~~~~~~~a~~rGis~eei~~it~~Np~rlf~l-~~~~~~~~~~~~~~ 344 (363)
T 3ovg_A 286 LTKGKQTFGLA-YLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAF-DEKRNFDPLKVSKE 344 (363)
T ss_dssp HHTTEECCCTH-HHHHTHHHHHHHHTCCHHHHHHHHTHHHHHHTSC-CCCCCCCGGGSCHH
T ss_pred ccCCCCCCCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCcCccCcccCCHH
Confidence 000 0 00111 1222233444555799999999999999999999 56799999997654
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=83.20 Aligned_cols=247 Identities=11% Similarity=0.049 Sum_probs=125.8
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee-cCChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (535)
+||+|+|+.... ...+.......+.++||++++.+... ......+....+..+..+..++++.... ....+..
T Consensus 5 ~iD~H~Hl~~~~----~~~~~~~~l~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~~~i~~~~G~hP~~~~~~~~~~~ 78 (264)
T 1xwy_A 5 MFDIGVNLTSSQ----FAKDRDDVVACAFDAGVNGLLITGTN--LRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATE 78 (264)
T ss_dssp CEEEEECTTSGG----GTTTHHHHHHHHHHTTCCEEEECCCS--HHHHHHHHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEEeeCCCChh----hccCHHHHHHHHHHCCCCEEEEeCCC--HHHHHHHHHHHHhCCCEEEEEEECCcccccCCHHHH
Confidence 899999997641 11234444667889999999876432 1111122222222222222233332111 1122345
Q ss_pred HHHHHHHHHcCCCEEEE-EeecCCCCc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFKF-FMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik~-~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+++.++....+..+++. .+++..... ...+.+++.++.|.++|+++.+|+... ..+.++.
T Consensus 79 ~~l~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a--~~~~~~i-------------- 142 (264)
T 1xwy_A 79 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDA--HERFMTL-------------- 142 (264)
T ss_dssp HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC--HHHHHHH--------------
T ss_pred HHHHHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCc--hHHHHHH--------------
Confidence 66666653333334432 234321111 112458899999999999999998532 1112211
Q ss_pred cCChhhHHHHHHHHHHHHHhc---CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeE
Q 009410 262 SRPPLLEGEATTRAIRLAEFV---NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (535)
.+.. ..++++ |+.+... +.++.+.+.|+.+..+.... .+.
T Consensus 143 -----------------l~~~~~~~~~~v~-H~~~g~~-~~~~~~~~~g~yi~~~g~~~------------~~~------ 185 (264)
T 1xwy_A 143 -----------------LEPWLDKLPGAVL-HCFTGTR-EEMQACVAHGIYIGITGWVC------------DER------ 185 (264)
T ss_dssp -----------------HGGGGGGSSCEEE-CSCCCCH-HHHHHHHHTTCEEEECGGGG------------CTT------
T ss_pred -----------------HHhcCCCCCcEEE-EccCCCH-HHHHHHHHCCeEEEECcccc------------CCc------
Confidence 1222 235544 9865443 66667777787665442210 000
Q ss_pred EcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCC-cccCcchHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009410 339 MSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDD-FRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415 (535)
Q Consensus 339 ~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~ 415 (535)
....++++++.. -+++++||. |+...... .+ +..-++. -..+...+..+....++|.+++.+.
T Consensus 186 ---------~~~~l~~~~~~~~~drll~eTD~-P~~~~~~~---~~~~~g~~n~-p~~~~~~~~~~a~~~g~~~e~~~~~ 251 (264)
T 1xwy_A 186 ---------RGLELRELLPLIPAEKLLIETDA-PYLLPRDL---TPKPSSRRNE-PAHLPHILQRIAHWRGEDAAWLAAT 251 (264)
T ss_dssp ---------TSHHHHHHGGGSCGGGEEECCCT-TSCCCTTC---TTCCCSSCCC-GGGHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ---------CcHHHHHHHHhCCHHHEEEecCC-CCcCcccc---ccccCCCCCc-hHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 003355565542 369999996 33211100 00 1111110 0012222323323347999999999
Q ss_pred HhHHHHHHcCC
Q 009410 416 TSTECARIFNV 426 (535)
Q Consensus 416 ~T~~~A~~lgl 426 (535)
.+.|++++|++
T Consensus 252 ~~~Na~rl~~l 262 (264)
T 1xwy_A 252 TDANVKTLFGI 262 (264)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 99999999997
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-06 Score=86.25 Aligned_cols=247 Identities=13% Similarity=0.052 Sum_probs=126.6
Q ss_pred HHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc-ccccccceeeeeec---CChhhHHHHHHHHHH---cC-----
Q 009410 129 SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAITK---WDEVVSDEMEVMVKE---KG----- 196 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~g----- 196 (535)
..+..+.+.||+|++++...........+.+..+..+ ..+...|++..... ......+++.++... .|
T Consensus 90 ~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~Gi~~~~ 169 (364)
T 3k2g_A 90 AEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLASSMPETAARLSADDIADEIVAEALEGTDGTD 169 (364)
T ss_dssp HHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHTCBTTBS
T ss_pred HHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHhccccCC
Confidence 4456678899999999864322223344444443333 44555555521111 111123444333211 12
Q ss_pred --CCEEE-EEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCCcccccccCChhhHHHHH
Q 009410 197 --INSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272 (535)
Q Consensus 197 --~~~ik-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 272 (535)
+..++ +..++ .......+.+++.++.|++.|+++.+|..+. ....+.++.+.+.|..
T Consensus 170 vkag~IGEiGld~-~~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a~~e~l~iL~e~g~~------------------ 230 (364)
T 3k2g_A 170 ARIGLIGEIGVSS-DFTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGAD------------------ 230 (364)
T ss_dssp CCCSSEEEEECCT-TCCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCCHHHHHHHHHHTTCC------------------
T ss_pred cceeEEEEEEcCC-CCCHHHHHHHHHHHHHHHHHCCeEEEecCCCCccHHHHHHHHHHcCCC------------------
Confidence 23343 44444 1112235568888999999999999998421 2223333333222221
Q ss_pred HHHHHHHHhcCCCEEEEEccC-HHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHH
Q 009410 273 TRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (535)
Q Consensus 273 ~~~~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (535)
..++.+.|+.. ....+....+.+.|+.+..+.......+... .+ ..|. .......
T Consensus 231 ----------~~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f~g~gt~~~f~~~-----------~~-~~~~--d~~ra~~ 286 (364)
T 3k2g_A 231 ----------LRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMDFFYADQ-----------GV-QCPS--DDEVARA 286 (364)
T ss_dssp ----------GGGEEECCCGGGTTCHHHHHHHHHHTCEEEECCTTCCCEETTT-----------TE-ECCC--HHHHHHH
T ss_pred ----------CCceEEECCCCCCCCHHHHHHHHhCCcEEEecCCccccccccc-----------cc-cccc--HHHHHHH
Confidence 12356779983 4134777778888987765432100000000 00 0000 0012245
Q ss_pred HHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 352 LQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 352 ~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
++++++.| -++.+.||.. ....... +.. ++...-+.... ..+...|+|.+++.++.|.||+++|++.
T Consensus 287 l~~lv~~gp~drilleTD~p-~~~~~~~-----~gg--~~~~~l~~~~~-~~l~~~Gis~eei~~~~~~Np~rlf~l~ 355 (364)
T 3k2g_A 287 ILGLADHGYLDRILLSHDVF-VKMMLTR-----YGG--NGYAFVTKHFL-PRLRRHGLDDAALETLMVTNPRRVFDAS 355 (364)
T ss_dssp HHHHHHTTCGGGEEECCCCC-SGGGSGG-----GTS--CTTSHHHHHHH-HHHHHTTCCHHHHHHHHTHHHHHHHCTT
T ss_pred HHHHHHhCCcccEEEeCCCC-CCCCCCC-----CCC--CCcchHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHhCCC
Confidence 77888887 4689999953 2222111 111 11111122222 2223557999999999999999999984
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-06 Score=84.54 Aligned_cols=246 Identities=13% Similarity=-0.010 Sum_probs=124.8
Q ss_pred HHHHHHHhCCcEEEeccccC-CCCChHHHHHHHHHHhc-ccccccceeeeee--cCChhhHHHHHHHH-H--HcCC----
Q 009410 129 SGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAK-NSCMDYGFHMAIT--KWDEVVSDEMEVMV-K--EKGI---- 197 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~--~~g~---- 197 (535)
..+..+.+.||||++++.+. ........+.+..+..+ ..+...|++.... ....+..+++.++. . ..|.
T Consensus 79 ~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~~~~~L~~~~~~ei~~gi~~t~ 158 (365)
T 3rhg_A 79 FELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDGTD 158 (365)
T ss_dssp HHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGSCHHHHHHHHHHHHHTCSTTSS
T ss_pred HHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcCCHHHHHHHHHHHHHhccccCC
Confidence 34556788999999999722 22222333333333333 4444555552111 00000223333222 1 1222
Q ss_pred ---CEEE-EEeecCCCCcCCHHHHHHHHHHHHhc-CCeEEEEc-CChhhHHHHHHHHHHc-CCCCcccccccCChhhHHH
Q 009410 198 ---NSFK-FFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQKRMIEL-GITGPEGHALSRPPLLEGE 270 (535)
Q Consensus 198 ---~~ik-~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 270 (535)
..++ +.+++ .......+.+++.++.|.+. |+++.+|. .......+.++.+.+. +..
T Consensus 159 vkag~IGEiGld~-~~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~~~~---------------- 221 (365)
T 3rhg_A 159 IRAGMIGEIGVSP-FFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCD---------------- 221 (365)
T ss_dssp CCCCEEEEEECCT-TCCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCCHHHHHHHHTTTTCCC----------------
T ss_pred ceeEEEEEEEcCC-CCCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcCHHHHHHHHHhccCCC----------------
Confidence 3343 43332 11122246688888999999 99999997 4222223333333222 211
Q ss_pred HHHHHHHHHHhcCCCEEEEEcc-CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCc-cc
Q 009410 271 ATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GH 348 (535)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~ 348 (535)
..++.+.|+. +....+....+.+.|+.+..+....... ++ .. .. . ... ..
T Consensus 222 ------------~~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g~g~~~t-----f~-----~~-~~--~---~~d~~~ 273 (365)
T 3rhg_A 222 ------------PAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDIS-----FP-----KE-GA--A---PSVMDT 273 (365)
T ss_dssp ------------GGGEEESCCGGGTTCHHHHHHHHHTTCEEEECCTTCCCB-----CS-----SS-CB--C---CCHHHH
T ss_pred ------------CCceEEecCCCCCCCHHHHHHHHhCCCEEEecCCCcccc-----cc-----cc-cc--c---cchHHH
Confidence 0135678998 4133477778888998776543210000 00 00 00 0 001 12
Q ss_pred HHHHHHHHhcCC--eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 349 NKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 349 ~~~~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
...++++++.|. ++.+.||.. ........+ . ++... +...+...++..|+|.+++.++.|.||+++|++
T Consensus 274 a~~l~~li~~g~~drilleTD~p-~l~~~~~~G-----~--~~~~~-l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~l 344 (365)
T 3rhg_A 274 VEAVATLIERGYGNQIVLSHDVF-LKQMWAKNG-----G--NGWGF-VPNVFLSLLAQRGIDKTIIDKLCIDNPANLLAA 344 (365)
T ss_dssp HHHHHHHHHTTCGGGEEECCCCC-SGGGSGGGT-----S--CTTTH-HHHTHHHHHHHTTCCHHHHHHHTTHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCcEEEeCCCC-CCCCCCcCC-----C--CCchh-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC
Confidence 245778888874 589999954 322221111 0 11111 111122334456799999999999999999998
Q ss_pred CC
Q 009410 427 YP 428 (535)
Q Consensus 427 ~~ 428 (535)
..
T Consensus 345 ~~ 346 (365)
T 3rhg_A 345 EN 346 (365)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-07 Score=87.61 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=136.8
Q ss_pred cccccccccccccCC----------CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHH-hccccccccee
Q 009410 106 GGIDPHTHLAMEFMG----------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AKNSCMDYGFH 174 (535)
Q Consensus 106 GlID~H~H~~~~~~g----------~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 174 (535)
|+..+|=|+.....+ ....+.....+..+.+.|++|++|+.....+.....+....+. +-+.....|++
T Consensus 17 G~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y 96 (330)
T 3pnz_A 17 GFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFN 96 (330)
T ss_dssp CSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCC
Confidence 677788887553100 0112233345566788999999999655444333444444433 33333333433
Q ss_pred eeee--------------------cC----C-hhhHHHHHHHHHHcCC-------CEEEEEeecCCCCcCCHHHHHHHHH
Q 009410 175 MAIT--------------------KW----D-EVVSDEMEVMVKEKGI-------NSFKFFMAYKGSFMINDELLIEGFK 222 (535)
Q Consensus 175 ~~~~--------------------~~----~-~~~~~~~~~~~~~~g~-------~~ik~~~~~~~~~~~~~~~l~~~~~ 222 (535)
.... .+ + ++..+.+..-+ ..|. ..+++.+++........+.+++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~t~vkaGvIEiGld~~~~~~~q~~~f~aq~~ 175 (330)
T 3pnz_A 97 KSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEV-ENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVAR 175 (330)
T ss_dssp CGGGGGSBCCGGGHHHHCSCSBHHHHHHTSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCchhhccCCHHHHHHHHHHHH-HhhCCCcCcCcCeEEEEcCCCCCCHHHHHHHHHHHH
Confidence 2110 00 1 11222222222 2333 2367777765333334677899999
Q ss_pred HHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc-CHHHHHHHH
Q 009410 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIA 301 (535)
Q Consensus 223 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~ 301 (535)
.|++.|+++.+|........+.++.+.+.|.. ..++.+.||. +.+ .+...
T Consensus 176 ~A~~~glPViiH~r~g~~a~~~l~iL~e~~~~----------------------------~~~vvi~H~~~s~~-~e~a~ 226 (330)
T 3pnz_A 176 AHHETKAPIHSHTEAGTMALEQIEILKQENIP----------------------------LEYLSIGHMDRNLD-PYYHK 226 (330)
T ss_dssp HHHHHCCCEEEECGGGCCHHHHHHHHHHTTCC----------------------------GGGEEETTGGGSCC-HHHHH
T ss_pred HHHHHCCeEEEeCCCCcChHHHHHHHHHcCCC----------------------------CCeEEEecCCCCCC-HHHHH
Confidence 99999999999986421111223333222221 1235677985 444 36777
Q ss_pred HHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcC
Q 009410 302 KARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFG 379 (535)
Q Consensus 302 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~ 379 (535)
.+.+.|..+..+.... + .+ ++ .......+.++++.| -++.++||.+ .......
T Consensus 227 ~~l~~G~~i~~~g~~t-------------~----~~---~~--~~~~~~~l~~lv~~g~~drilleTD~p-~~~~~~~-- 281 (330)
T 3pnz_A 227 QVAKTGAFMSFDGIAK-------------I----KY---AP--ESARIAAILYLVSEGFEDQILVSGDTA-RKTYYKH-- 281 (330)
T ss_dssp HHHTTTCEEEECCTTC-------------T----TT---CC--HHHHHHHHHHHHHTTCGGGEEECCCCC-SGGGSHH--
T ss_pred HHHHcCcEEEEccCcc-------------c----CC---CC--hHHHHHHHHHHHHcCCCCeEEEeCCCC-CCCCCCc--
Confidence 7888897776542210 0 00 00 001123577778776 4589999954 2221110
Q ss_pred CCCcccCcchHHHHHHHHHHHH---HhcCCCCHHH-HHHHHhHHHHHHcCC
Q 009410 380 IDDFRKIPNGIEERMHLVWDTM---VESGQISVTD-YVRLTSTECARIFNV 426 (535)
Q Consensus 380 ~~~~~~~~~g~~~~l~~~~~~~---~~~~~ls~~e-al~~~T~~~A~~lgl 426 (535)
+..-+ +...-+...+.++ ++..|+|.++ +.++.|.||+++|++
T Consensus 282 ---~G~~~-~~~~~~~~~~~~l~~~a~~~Gis~ee~i~~~t~~Np~rlf~l 328 (330)
T 3pnz_A 282 ---YGHGP-GLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTF 328 (330)
T ss_dssp ---HHCCS-TTTHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHSSC
T ss_pred ---cCCCC-CcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHhcC
Confidence 00001 1111112222222 3456799998 999999999999998
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=92.19 Aligned_cols=145 Identities=13% Similarity=0.071 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccC
Q 009410 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293 (535)
Q Consensus 214 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 293 (535)
++.+.++++.|+++|+++.+|+..... | .+ . ..+..++. ..+.. .+.|+..
T Consensus 214 ~~~~~~~~~~A~~~gl~~~~HagE~~~-----------~----------~~-~---~~i~~al~---~lg~~-ri~Hgv~ 264 (371)
T 2pgf_A 214 LKEYKEIFDYVRESGVPLSVHAGEDVT-----------L----------PN-L---NTLYSAIQ---VLKVE-RIGHGIR 264 (371)
T ss_dssp GGGGHHHHHHHHHTTCCBEEEESCCTT-----------S----------SS-S---HHHHHHHH---TSCCS-EEEECGG
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCCCC-----------C----------Cc-h---HHHHHHHh---ccCCC-EEecchh
Confidence 778999999999999999999954310 0 00 0 11122222 22444 5789877
Q ss_pred HHH-HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCC
Q 009410 294 MDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (535)
Q Consensus 294 ~~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~ 372 (535)
... .+.++.+++.|+.+..||.++.. .+.... ....++++++++|+++++|||+...
T Consensus 265 l~~~~~l~~~l~~~~i~v~~cP~SN~~-------------l~~~~~--------~~~~pi~~ll~~Gv~V~lgTD~~~~- 322 (371)
T 2pgf_A 265 VAESQELIDMVKEKNILLEVCPISNVL-------------LKNAKS--------MDTHPIRQLYDAGVKVSVNSDDPGM- 322 (371)
T ss_dssp GGGCHHHHHHHHHTTCEEEECHHHHHH-------------TTSSSC--------GGGCTHHHHHHTTCEEEECCBCHHH-
T ss_pred ccccHHHHHHHHHcCCeEEECcchhHH-------------hCCCCc--------cccChHHHHHHCCCeEEEeCCCCcc-
Confidence 643 14589999999999999986322 211000 0001289999999999999995432
Q ss_pred hhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 373 STQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.... +...+... ....+++++++ +.+|.|++++.+++
T Consensus 323 ~~~~-------------l~~e~~~a----~~~~~l~~~~l-~~lt~ns~~asf~~ 359 (371)
T 2pgf_A 323 FLTN-------------INDDYEEL----YTHLNFTLEDF-MKMNEWALEKSFMD 359 (371)
T ss_dssp HTCC-------------HHHHHHHH----HHHHCCCHHHH-HHHHHHHHHHCCSC
T ss_pred cCCC-------------HHHHHHHH----HHHhCCCHHHH-HHHHHHHHHHHcCC
Confidence 1111 11122222 22347999996 88999999999874
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-06 Score=80.72 Aligned_cols=246 Identities=17% Similarity=0.164 Sum_probs=122.3
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhccc---ccccceeeeeecCChh
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS---CMDYGFHMAITKWDEV 183 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (535)
+||+|+|+....... ...+.......+.+.||++++.+... ....+...+...+. ...++++..... ...
T Consensus 3 ~iD~H~Hl~~~~~~~-~~~~~~~~l~~~~~~Gv~~~v~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~hP~~~~-~~~ 75 (265)
T 1yix_A 3 LVDSHCHLDGLDYES-LHKDVDDVLAKAAARDVKFCLAVATT-----LPSYLHMRDLVGERDNVVFSCGVHPLNQN-DPY 75 (265)
T ss_dssp EEEEEECGGGSCTTT-TCSSHHHHHHHHHHTTEEEEEECCSS-----HHHHHHHHHHHCSCTTEEEEECCCTTCCS-SCC
T ss_pred EEEEeeCCCchhhcc-cccCHHHHHHHHHHCCCCEEEEeCCC-----HHHHHHHHHHHHHCCCeEEEEEeCCCccc-ccc
Confidence 799999998651100 02234444677788999998865311 12222222222221 111222211110 001
Q ss_pred hHHHHHHHHHHcCCCEEEE-EeecCC---CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009410 184 VSDEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (535)
..++++++.+......++. .+++.. ......+.+.+.++.|.++|+++.+|+.... .+..+.+
T Consensus 76 ~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l----------- 142 (265)
T 1yix_A 76 DVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDAR--ADTLAIL----------- 142 (265)
T ss_dssp CHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHH-----------
T ss_pred hHHHHHHHhccCCeEEEEccccCCCcCCCChHHHHHHHHHHHHHHHHhCCCEEEEecCch--HHHHHHH-----------
Confidence 2466666553222222221 112211 1122356789999999999999999985321 1111111
Q ss_pred cccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
+.......++++ |+..... +.+..+.+.|+.+..+... .+..
T Consensus 143 -----------------~~~~~p~~~~v~-H~~~~~~-~~~~~~~~~g~~~~~sg~~-------------~~~~------ 184 (265)
T 1yix_A 143 -----------------REEKVTDCGGVL-HCFTEDR-ETAGKLLDLGFYISFSGIV-------------TFRN------ 184 (265)
T ss_dssp -----------------HHTTGGGTCEEE-TTCCSCH-HHHHHHHTTTCEEEECGGG-------------GSTT------
T ss_pred -----------------HhcCCCCCCEEE-EcCCCCH-HHHHHHHHCCcEEEECCcc-------------ccCc------
Confidence 111111345554 8876554 6666777777666544211 0000
Q ss_pred cCCCCCcccHHHHHHHHhc-C-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 009410 340 SPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTS 417 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T 417 (535)
...+.++++. | -++++|||++ +.... ++..-++ ....+......+.+..+++.+++.+..+
T Consensus 185 ---------~~~~~~~~~~~~~drll~~TD~P-~~~~~------~~~g~~~-~~~~l~~~~~~l~~~~~~~~~~~~~i~~ 247 (265)
T 1yix_A 185 ---------AEQLRDAARYVPLDRLLVETDSP-YLAPV------PHRGKEN-QPAMVRDVAEYMAVLKGVAVEELAQVTT 247 (265)
T ss_dssp ---------CHHHHHHHHHSCGGGEEECCCBT-SCCCT------TCTTSCC-CGGGHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ---------hHHHHHHHHhCChHHEEEecCCC-CCCCc------ccCCCCC-chHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 0235555554 3 5689999963 32111 1111011 0001222222222324699999999999
Q ss_pred HHHHHHcCCC
Q 009410 418 TECARIFNVY 427 (535)
Q Consensus 418 ~~~A~~lgl~ 427 (535)
.|++++|+++
T Consensus 248 ~Na~rl~~l~ 257 (265)
T 1yix_A 248 DNFARLFHID 257 (265)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHhCcC
Confidence 9999999984
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-06 Score=81.43 Aligned_cols=264 Identities=14% Similarity=0.126 Sum_probs=136.4
Q ss_pred cccccccccccccCCC--------Cch-hhh---HHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHh-cccccccc
Q 009410 106 GGIDPHTHLAMEFMGS--------ETI-DDF---FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA-KNSCMDYG 172 (535)
Q Consensus 106 GlID~H~H~~~~~~g~--------~~~-~~~---~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 172 (535)
|+.++|=|+...+.+. ... +.+ ...+..+.+.|+.|++|+.....+.....+.+..+.. -+.....|
T Consensus 52 G~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG 131 (360)
T 3tn4_A 52 GKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATG 131 (360)
T ss_dssp CSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEEC
T ss_pred CCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCc
Confidence 7788888875432111 111 111 2233456789999999997655543444444444433 23333334
Q ss_pred eeeeeecCC---------hhhHHHHHHHH-H--HcC-------CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEE
Q 009410 173 FHMAITKWD---------EVVSDEMEVMV-K--EKG-------INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (535)
Q Consensus 173 ~~~~~~~~~---------~~~~~~~~~~~-~--~~g-------~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (535)
++....... ....+++.++. + ..| +..||...++..........+++.+++|++.|+++.+
T Consensus 132 ~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~i 211 (360)
T 3tn4_A 132 YYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIIT 211 (360)
T ss_dssp CCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred cccCcccCCcccchhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 332211000 00112222211 1 233 3456665444332233356789999999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE-ccCHHHHHHHHHHHHcCCcEEe
Q 009410 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH-VMSMDAMEEIAKARKAGQRVIG 312 (535)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H-~~~~~~~~~~~~~~~~g~~v~~ 312 (535)
|........+.++.+.+.|.. ..++.+.| +.+.+. +..+.+.+.|+.+..
T Consensus 212 Ht~~~~~~~e~l~iL~eeG~~----------------------------~~~vvi~H~~~~~d~-~~~~~~l~~G~yl~f 262 (360)
T 3tn4_A 212 HTQEGTMGPEQAAYLLEHGAD----------------------------PKKIVIGHMCDNTDP-DYHRKTLAYGVYIAF 262 (360)
T ss_dssp ECSTTCCHHHHHHHHHHTTCC----------------------------GGGEEECCGGGCCCH-HHHHHHHTTTCEEEE
T ss_pred EcCcccCCHHHHHHHHHcCCC----------------------------CCceEEEcCCCCCCH-HHHHHHHHcCCEEEE
Confidence 996543323334444444432 12467889 455554 777788889987765
Q ss_pred ccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCC------CCChhhhhcCCCCcc
Q 009410 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHC------AFNSTQKAFGIDDFR 384 (535)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~------~~~~~~~~~~~~~~~ 384 (535)
...-. + ..+ ..|+ .......+.++.+.| -+++++||.. |+.... ++.
T Consensus 263 D~iG~------~----------~~~-~~p~--d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~py~~p~------p~r 317 (360)
T 3tn4_A 263 DRFGI------Q----------GMV-GAPT--DEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPE------PFA 317 (360)
T ss_dssp CCTTC------C----------CST-TCCC--HHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCH------HHH
T ss_pred ccccc------c----------ccc-CCCC--hHHHHHHHHHHHHhcCcceEEEecCCCcccccCCCCCcc------ccc
Confidence 42210 0 000 0000 011124577888887 4599999952 221111 011
Q ss_pred cCcc--hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHc
Q 009410 385 KIPN--GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 424 (535)
Q Consensus 385 ~~~~--g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~l 424 (535)
...+ +....+...+-. ++..|+|.+++-++.+.||+++|
T Consensus 318 ~~~~~~~y~~i~~~~ip~-L~~~Gvs~e~I~~i~~~NP~rlf 358 (360)
T 3tn4_A 318 EMMKNWHVEHLFVNIIPA-LKNEGIRDEVLEQMFIGNPAALF 358 (360)
T ss_dssp HHTTTCSTTHHHHTHHHH-HHHTTCCHHHHHHHHTHHHHHHH
T ss_pred ccCCCCCchhHHHHHHHH-HHHcCCCHHHHHHHHHHhHHHHh
Confidence 0001 112222222222 23457999999999999999987
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-06 Score=81.40 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=137.3
Q ss_pred cccccccccccccCCCC--------c-hhh---hHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHH-hcccccccc
Q 009410 106 GGIDPHTHLAMEFMGSE--------T-IDD---FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AKNSCMDYG 172 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~--------~-~~~---~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (535)
|+..+|=|+.....+.. . .+. ....+..+.+.||+++++............+.+..+. +...+...|
T Consensus 32 G~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG 111 (339)
T 3gtx_A 32 GATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATG 111 (339)
T ss_dssp CEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEEC
T ss_pred CCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcC
Confidence 77888888755422111 1 111 2234456788999999998633222223333333333 334444555
Q ss_pred eeeee------ecCC---hhhHHHHHHHHHH---cC-------CCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEE
Q 009410 173 FHMAI------TKWD---EVVSDEMEVMVKE---KG-------INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (535)
Q Consensus 173 ~~~~~------~~~~---~~~~~~~~~~~~~---~g-------~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 233 (535)
++..- .... ....+++.++... .| +..+++.++++.......+.+++.++.|.+.|+++.+
T Consensus 112 ~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~~~~~~q~~~f~aq~~lA~~~glPVii 191 (339)
T 3gtx_A 112 FYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIIT 191 (339)
T ss_dssp CCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence 55421 0000 1122444433322 11 3455777777533333456788999999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEcc-CHHHHHHHHHHHHcCCcEEe
Q 009410 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIG 312 (535)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~-~~~~~~~~~~~~~~g~~v~~ 312 (535)
|........+.++.+.+.|.. ..++.+.|+. +.+ .+....+.+.|..+..
T Consensus 192 H~~~gr~a~~~~~iL~~~~~~----------------------------~~~~vi~H~~~~~~-~e~a~~~l~~G~~i~~ 242 (339)
T 3gtx_A 192 HTQEGQQGPQQAELLTSLGAD----------------------------PARIMIGHMDGNTD-PAYHRETLRHGVSIAF 242 (339)
T ss_dssp ECSTTCCHHHHHHHHHHTTCC----------------------------GGGEEECCGGGCCC-HHHHHHHHTTTCEEEE
T ss_pred eCCCCcCHHHHHHHHHHcCCC----------------------------cccEEEEccCCCCC-HHHHHHHHHcCcEEEE
Confidence 994321111223332222221 1235678997 444 4777778888977765
Q ss_pred ccccceEeeCcccccCcCccccceeEEcCCCCCc-ccHHHHHHHHhcCC--eEEEeCCCCCCChhhhhcCCCCccc-C--
Q 009410 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRK-I-- 386 (535)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~-~-- 386 (535)
+.... +. +...| .. .....++++++.|. ++.+.||.+........ ..|... .
T Consensus 243 ~g~~t------~~-----------~~~~p---~~~~~~~~l~~li~~~~~drilleTD~p~~~~~~P~--~~p~~~~~~~ 300 (339)
T 3gtx_A 243 DRIGL------QG-----------MVGTP---TDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPP--AIPEAALPAV 300 (339)
T ss_dssp CCTTC------CS-----------STTCC---CHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCC--CCCGGGHHHH
T ss_pred ccCcc------cc-----------ccCCC---chHHHHHHHHHHHHhcCCCeEEEecCCCccccCCcc--cccccccccC
Confidence 43210 00 00000 00 11245777888764 58999995421000000 000000 0
Q ss_pred -cchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 387 -PNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 387 -~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
.++.. .+...+...++..|+|.+++.++.|.||+++|+
T Consensus 301 g~n~p~-~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 301 KDWHPL-HISDDILPDLRRRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp HTCSTT-HHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred CCCCch-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 00111 222233344556689999999999999999985
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-06 Score=79.88 Aligned_cols=233 Identities=16% Similarity=0.120 Sum_probs=128.0
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecCChhhHH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (535)
|||+|+|+... . +.......+.+.||..+.- +... ..........+..+..+..+|+++.......+..+
T Consensus 3 liDtH~HL~~~--~-----d~~~vl~~a~~~gV~~i~v--~~~~-~~~~~~~~la~~~~~v~~~~GiHP~~~~~~~~~l~ 72 (254)
T 3gg7_A 3 LIDFHVHLDLY--P-----DPVAVARACEERQLTVLSV--TTTP-AAWRGTLALAAGRPHVWTALGFHPEVVSERAADLP 72 (254)
T ss_dssp CEEEEECGGGS--S-----SHHHHHHHHHHTTCEEEEC--CSSG-GGHHHHHGGGTTCTTEEECBCCCGGGTTTTGGGTH
T ss_pred eEEEeeCCCCC--C-----CHHHHHHHHHHCCCcEEEe--cCCH-HHHHHHHHHHHhCCCeEEEEeeCcccccccHHHHH
Confidence 89999999753 1 3444467778899998662 2111 12222222222223344455555532222224455
Q ss_pred HHHHHHHHcCCCEEE-EEeecCCC----CcCCHHHHHHHHHHHHhcCCeEE-EEcCChhhHHHHHHHHHHcCCCCccccc
Q 009410 187 EMEVMVKEKGINSFK-FFMAYKGS----FMINDELLIEGFKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEGHA 260 (535)
Q Consensus 187 ~~~~~~~~~g~~~ik-~~~~~~~~----~~~~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (535)
.+.+++. ....+. +.+++.-. .....+.+++.++.|.++++|+. +|+.... .+.++.
T Consensus 73 ~l~~~~~--~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~--~~~~~i------------- 135 (254)
T 3gg7_A 73 WFDRYLP--ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAE--SEVLNC------------- 135 (254)
T ss_dssp HHHHHGG--GCSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCH--HHHHHH-------------
T ss_pred HHHHHhh--hccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcH--HHHHHH-------------
Confidence 5655552 234443 33343211 11235668999999999999998 9996532 122221
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCC-CEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 261 LSRPPLLEGEATTRAIRLAEFVNT-PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
.+..+. ...+.|+.+.+. +.++.+.+.|+.+...... .
T Consensus 136 ------------------l~~~~~~~~~v~H~fsG~~-e~a~~~l~~G~yis~~g~~---------~------------- 174 (254)
T 3gg7_A 136 ------------------LEANPRSGTPILHWYSGSV-TELRRAISLGCWFSVGPTM---------V------------- 174 (254)
T ss_dssp ------------------HHHCGGGEEEEEETCCSCH-HHHHHHHHTTCEEEECHHH---------H-------------
T ss_pred ------------------HHHcCCCCcEEEEeCCCCH-HHHHHHHcCCcEEEECccc---------C-------------
Confidence 122211 123569887665 7777777888776544321 0
Q ss_pred cCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 009410 340 SPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTS 417 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T 417 (535)
+ ...++++++.- -++.+.||+ |+.... .-.+.|. .+...++.+.+..+++.+++.+..+
T Consensus 175 ----~----~~~~~~~v~~ip~drlLlETD~-P~~~~r------g~~n~P~----~v~~v~~~iA~~~g~~~ee~~~~~~ 235 (254)
T 3gg7_A 175 ----R----TQKGAALIRSMPRDRVLTETDG-PFLELD------GQAALPW----DVKSVVEGLSKIWQIPASEVERIVK 235 (254)
T ss_dssp ----T----SHHHHHHHHHSCGGGEEECCCT-TTSEET------TEECCGG----GHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ----c----hHHHHHHHHHcCCCeEEEeCCC-CccccC------CCCCCHH----HHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 0 02244444442 458999995 442110 0111222 2333333444445799999999999
Q ss_pred HHHHHHcCC
Q 009410 418 TECARIFNV 426 (535)
Q Consensus 418 ~~~A~~lgl 426 (535)
.|+.++|++
T Consensus 236 ~N~~~lf~~ 244 (254)
T 3gg7_A 236 ENVSRLLGT 244 (254)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHCC
Confidence 999999998
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-05 Score=78.32 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=99.5
Q ss_pred cCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHH
Q 009410 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (535)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 274 (535)
.++.++.+..+. ...+++.+..+++.|++.|+++.+|+........ +..
T Consensus 163 ~~vvG~dL~g~E---~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----------------------------i~~ 211 (343)
T 3rys_A 163 APIAGIGLDSAE---VGNPPSKFERLYQRAAEAGLRRIAHAGEEGPASY----------------------------ITE 211 (343)
T ss_dssp CCCCEEEEESCC---TTCCGGGGHHHHHHHHHTTCEEEEEESSSSCHHH----------------------------HHH
T ss_pred CCEEEEecCCcc---cCCCHHHHHHHHHHHHHCCCeEEEeeCCCCCHHH----------------------------HHH
Confidence 345666554322 2345678999999999999999999954432211 112
Q ss_pred HHHHHHhcCCCEEEEEccCHHH-HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHH
Q 009410 275 AIRLAEFVNTPLYVVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353 (535)
Q Consensus 275 ~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 353 (535)
++. ..+.. .+.|+..... .++++.+++.|+.+..||+++.. .+..-. ....+++
T Consensus 212 al~---~lg~~-rIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~-------------l~~~~~--------~~~hPi~ 266 (343)
T 3rys_A 212 ALD---VLHVE-RIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSNVR-------------LRAVDK--------LADHPLP 266 (343)
T ss_dssp HHH---TSCCS-EEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHH-------------TTSSSC--------GGGCSHH
T ss_pred HHh---cCCcc-eeeeeeeecCChHHHHHHHhcCCCeeEchhHHHH-------------hCCCCC--------cccchHH
Confidence 221 12333 4778876542 37899999999999999986322 211000 0001289
Q ss_pred HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 354 ~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.++++|++++++||++..... . +...+.... ...++++++ ++.+|.|+.+.-.++
T Consensus 267 ~ll~~Gv~V~l~TDdp~~~~~-~-------------l~~E~~~a~----~~~~l~~~~-l~~l~~nsi~~sf~~ 321 (343)
T 3rys_A 267 EMLAIGLNVCVNSDDPAYFGG-Y-------------VDDNFEQLV----KVLEFSVPE-QATLAANSIRSSFAS 321 (343)
T ss_dssp HHHHTTCCEEECCBSTTTTTC-C-------------HHHHHHHHH----HHHCCCHHH-HHHHHHHHHHHSSSC
T ss_pred HHHHCCCeEEEeCCCccccCC-C-------------HHHHHHHHH----HHcCCCHHH-HHHHHHHHHHHHCCC
Confidence 999999999999996543222 1 122232222 234799999 588899999988774
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=77.48 Aligned_cols=253 Identities=15% Similarity=0.038 Sum_probs=136.7
Q ss_pred cccccccccccccC-C-----CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc-----cccccccee
Q 009410 106 GGIDPHTHLAMEFM-G-----SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-----NSCMDYGFH 174 (535)
Q Consensus 106 GlID~H~H~~~~~~-g-----~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 174 (535)
-|||+|+|+..... | ....++.......+...||..++..+.... .....++ ..+..+ ..+..+|++
T Consensus 27 ~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~~-~~~~~~~-La~~~~~~~~~~v~~~~GiH 104 (325)
T 3ipw_A 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLN-DFKKAIE-IINKYQNLTNIKLVTTIGVH 104 (325)
T ss_dssp CEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHH-HHHHHHH-HHHHHGGGCSSEEEEEECCC
T ss_pred CeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCHH-HHHHHHH-HHHHCCCcccceEEEEEEEC
Confidence 49999999986511 1 011345666678889999999986643211 2222333 233333 344445555
Q ss_pred eeeec-CChh-hHHHHHHHHHHc--CCCEEE-EEeecCCCC----cCCHHHHHHHHHHHHh-cCCeEEEEcCChhhHHHH
Q 009410 175 MAITK-WDEV-VSDEMEVMVKEK--GINSFK-FFMAYKGSF----MINDELLIEGFKRCKS-LGALAMVHAENGDAVFEG 244 (535)
Q Consensus 175 ~~~~~-~~~~-~~~~~~~~~~~~--g~~~ik-~~~~~~~~~----~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~~~ 244 (535)
..... ...+ ..+.+.++++.. .+..|. +.+++.... ..-.+.+++.++.|.+ +++|+.+|+.... .+.
T Consensus 105 P~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~--~d~ 182 (325)
T 3ipw_A 105 PTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSW--SDL 182 (325)
T ss_dssp GGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCH--HHH
T ss_pred cchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchH--HHH
Confidence 43221 1222 566777776432 333443 334543211 1224678899999999 9999999996432 222
Q ss_pred HHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcc
Q 009410 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (535)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 324 (535)
++.+.+.+.. ..+. +.|+.+.+. ++++.+.+.|+.+....+.
T Consensus 183 l~iL~~~~~~----------------------------~~~g-ViH~FsGs~-e~a~~~l~lG~yis~~G~~-------- 224 (325)
T 3ipw_A 183 CQLNKELGYN----------------------------GCKG-VVHCFDGTE-EEMNQILNEGWDIGVTGNS-------- 224 (325)
T ss_dssp HHHHHHTTCT----------------------------TSCE-EECSCCCCH-HHHHHHHHTTCEEEECSGG--------
T ss_pred HHHHHhcCCC----------------------------CCcE-EEEECCCCH-HHHHHHHhcCcEEeeCccc--------
Confidence 2222221110 1233 559987775 7788888888777654321
Q ss_pred cccCcCccccceeEEcCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhh-------cCCCCc------------
Q 009410 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKA-------FGIDDF------------ 383 (535)
Q Consensus 325 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~-------~~~~~~------------ 383 (535)
++ ....+ ++++. --++.+.||+ |+...... ...-|+
T Consensus 225 -~k--------------------~~~~~-~~v~~iPldrlLlETDa-P~l~~~~~~~~~~~~~~p~p~r~~~k~~~~~~~ 281 (325)
T 3ipw_A 225 -LQ--------------------SIELL-NVMKQIPIERLHIETDC-PYCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYV 281 (325)
T ss_dssp -GS--------------------SHHHH-HHHTTSCGGGEEECCCT-TSCCCCTTSGGGGGCSSCCCCBCGGGCCTTSCB
T ss_pred -cC--------------------cHHHH-HHHHhCCcccEEEeCCC-ccccccccccchhcccccCcccccccccccccc
Confidence 00 00112 33333 2348999994 44211000 000011
Q ss_pred --ccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 384 --RKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 384 --~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.+-|. .+...++.+.+-.+++.+++.+..+.|.-++|++.
T Consensus 282 g~rNeP~----~v~~v~~~iA~l~g~~~eeva~~t~~Na~~lF~~~ 323 (325)
T 3ipw_A 282 QRRNEPS----NIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFPT 323 (325)
T ss_dssp TTCCCGG----GHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCcCcHH----HHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHhCcC
Confidence 12222 23333434444457999999999999999999874
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-05 Score=77.23 Aligned_cols=129 Identities=12% Similarity=-0.009 Sum_probs=71.1
Q ss_pred EeecccccccccccccCC-----CCc---hhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhccccccccee
Q 009410 103 VMPGGIDPHTHLAMEFMG-----SET---IDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174 (535)
Q Consensus 103 vlPGlID~H~H~~~~~~g-----~~~---~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (535)
+=|++||+|+|+...-.. ... ..........+-+.||+.++-..........+.+....+..+..+..+
T Consensus 23 ~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~~~p~r~~g~--- 99 (294)
T 4i6k_A 23 MKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQQYPDRLKGI--- 99 (294)
T ss_dssp --CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHHHSTTTEEEE---
T ss_pred CCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHHHCCCeEEEE---
Confidence 455799999999865110 000 233455566778899998875422111111122222222222211111
Q ss_pred eeeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
.++.. . ...++++++. +.|+.++++.....+......+.+...++.|.++|+++.+|+..
T Consensus 100 ~~v~P-~-~~~~eL~~l~-~~gv~Gi~l~~~~~~~~~~~~~~~~~~~~~a~~~glpv~iH~~~ 159 (294)
T 4i6k_A 100 AVVQH-T-TTFNELVNLK-AQGIVGVRLNLFGLNLPALNTPDWQKFLRNVESLNWQVELHAPP 159 (294)
T ss_dssp ECCCT-T-CCHHHHHHHH-TTTEEEEEEECTTSCCCCSSSHHHHHHHHHHHHTTCEEEEECCH
T ss_pred EEeCC-c-ccHHHHHHHH-HCCCcEEEeccCCCCCCCcccHHHHHHHHHHHHcCCEEEEeeCc
Confidence 11111 1 1235666665 56888888654322222346689999999999999999999863
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-05 Score=73.66 Aligned_cols=244 Identities=17% Similarity=0.120 Sum_probs=119.7
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee-cCChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (535)
+||+|+|++.. . ...+.......+.+.||+.++.+.... ...+.+....+..+.....++++.... ...++..
T Consensus 2 ~iD~H~Hl~~~--~--~~~~~~~~l~~~~~~Gv~~~v~~~~~~--~~~~~~~~~~~~~p~~~~~~g~~P~~~~~~~~~~~ 75 (265)
T 2gzx_A 2 LIDTHVHLNDE--Q--YDDDLSEVITRAREAGVDRMFVVGFNK--STIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHL 75 (265)
T ss_dssp CEEEEECTTSG--G--GTTTHHHHHHHHHHTTCCEEEEEECSH--HHHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred eEEEeeCCCCc--c--cccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCEEEEEEeccCccccCCHHHH
Confidence 69999999765 1 112344446667789999888664321 112222222222222111122221110 1112345
Q ss_pred HHHHHHHHHcCCCEEEEE-eecC---CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFKFF-MAYK---GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~-~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+++.++.+..+..+++.. +++. .......+.+...++.|.++|+++.+|+.... .+..
T Consensus 76 ~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~---------------- 137 (265)
T 2gzx_A 76 EWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREAT--QDCI---------------- 137 (265)
T ss_dssp HHHHHHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHH----------------
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEecccH--HHHH----------------
Confidence 555555422223333321 1221 11123456789999999999999999985431 1111
Q ss_pred cCChhhHHHHHHHHHHHHHhc---CCCEEEEEccCHHHHHHHHHHHH-cCCcEEeccccceEeeCcccccCcCcccccee
Q 009410 262 SRPPLLEGEATTRAIRLAEFV---NTPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~H~~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (535)
++.+.. ..+++ .|+..... +.+..+.+ .|+.+..+... .+.
T Consensus 138 ---------------~~l~~~p~~~~~~i-~H~~~g~~-~~~~~~l~~~~~y~~~sg~~-------------~~~----- 182 (265)
T 2gzx_A 138 ---------------DILLEEHAEEVGGI-MHSFSGSP-EIADIVTNKLNFYISLGGPV-------------TFK----- 182 (265)
T ss_dssp ---------------HHHHHTTGGGTCEE-ETTCCSCH-HHHHHHHHTSCCEEEECGGG-------------GCS-----
T ss_pred ---------------HHHHhcCCCCCcEE-EEcCCCCH-HHHHHHHHHCCceEEeccee-------------ecC-----
Confidence 122222 24554 57665433 44555545 67655443211 000
Q ss_pred EEcCCCCCcccHHHHHHHHhc-C-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 009410 338 VMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRL 415 (535)
Q Consensus 338 ~~~p~~r~~~~~~~~~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~ 415 (535)
. . ..+.++++. | -++++|||. |+.... ++...++ ....+......+....+++.++.-+.
T Consensus 183 --~-~-------~~~~~~i~~~~~dril~gSD~-P~~~~~------~~~g~~~-~~~~~~~~~~~l~~~~~~~~~~~~~i 244 (265)
T 2gzx_A 183 --N-A-------KQPKEVAKHVSMERLLVETDA-PYLSPH------PYRGKRN-EPARVTLVAEQIAELKGLSYEEVCEQ 244 (265)
T ss_dssp --S-C-------CHHHHHHHHSCTTTEEECCCT-TSCCCT------TCTTSCC-CGGGHHHHHHHHHHHTTCCHHHHHHH
T ss_pred --C-c-------HHHHHHHHhCChhhEEEccCC-CCCCCc------ccCCCCC-ChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0 0 124555554 3 579999995 332211 1111111 00012222323333357999999999
Q ss_pred HhHHHHHHcCCC
Q 009410 416 TSTECARIFNVY 427 (535)
Q Consensus 416 ~T~~~A~~lgl~ 427 (535)
.+.|++++|++.
T Consensus 245 ~~~Na~rl~~~~ 256 (265)
T 2gzx_A 245 TTKNAEKLFNLN 256 (265)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhCCc
Confidence 999999999984
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-06 Score=81.17 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=65.8
Q ss_pred cccccccccccccCCC------CchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcc---cccccceeee
Q 009410 106 GGIDPHTHLAMEFMGS------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMA 176 (535)
Q Consensus 106 GlID~H~H~~~~~~g~------~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 176 (535)
.+||+|+|+....... ....+.......+.+.||++++..+.. . ...+...+...+ .+..+|++..
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~----~-~~~~~~~~la~~~~~v~~~~GiHP~ 76 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGN----L-QDSKDALHLAQTNGMFFSTVGCHPT 76 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCS----H-HHHHHHHHHHTTCTTEEEEECCCGG
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCC----H-HHHHHHHHHHHHCCCEEEEEEECcC
Confidence 5899999987651100 001344555677788999999877421 1 222222222222 2222333221
Q ss_pred eec-C----ChhhHHHHHHHHHHc--CCCEEE-EEeecCC-C-C--cCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 177 ITK-W----DEVVSDEMEVMVKEK--GINSFK-FFMAYKG-S-F--MINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 177 ~~~-~----~~~~~~~~~~~~~~~--g~~~ik-~~~~~~~-~-~--~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
... . ..+..+++.+++... .+..++ +.+++.- . . ....+.+++.++.|.++++++.+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~ 149 (301)
T 2xio_A 77 RCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRN 149 (301)
T ss_dssp GTHHHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEES
T ss_pred hhhhCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 110 0 012345566655321 233443 2334321 0 1 112367899999999999999999953
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-05 Score=74.74 Aligned_cols=244 Identities=18% Similarity=0.155 Sum_probs=122.0
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee-cCChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (535)
++|.|+|+... ....+.......+-++||+.++.+... ......+....+..+..+..++++.... ....+..
T Consensus 13 ~~~~~~hl~~~----~~~~~~~~~l~~~~~~GV~~~v~~~~~--~~~~~~~~~l~~~~p~i~~~~G~hP~~~~~~~~~~~ 86 (268)
T 1j6o_A 13 MVDTHAHLHFH----QFDDDRNAVISSFEENNIEFVVNVGVN--LEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDFI 86 (268)
T ss_dssp EEEEEECTTSG----GGTTTHHHHHHTTTTTTEEEEEEECSS--HHHHHHHHHHHTTCTTEEEEECCCGGGGGGCCTTHH
T ss_pred ccccccCCCCh----hhccCHHHHHHHHHHcCCCEEEEeCCC--HHHHHHHHHHHHHCCCEEEEEeeccccccccCHHHH
Confidence 68999999764 122334444566678999998876421 1111122222222122122222222111 1112345
Q ss_pred HHHHHHHHHcCCCEEEE-EeecCC---CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+++.++........++. .+++.- ......+.+...++.|.++|+++.+|+.... ....
T Consensus 87 ~~l~~~~~~~~~~~iGe~Gld~~~~~~~~~~q~~~f~~~~~~a~~~~lPv~iH~~~~~--~~~~---------------- 148 (268)
T 1j6o_A 87 EHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY--SEAY---------------- 148 (268)
T ss_dssp HHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHH----------------
T ss_pred HHHHHHhccCCEEEEEccccCCcccCCChHHHHHHHHHHHHHHHHhCCCEEEEeCchH--HHHH----------------
Confidence 55655542212222221 123221 1123467789999999999999999985321 1111
Q ss_pred cCChhhHHHHHHHHHHHHHhc---CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeE
Q 009410 262 SRPPLLEGEATTRAIRLAEFV---NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (535)
++.... ..++++ |+..... +.+..+.+.|+.+...... .+
T Consensus 149 ---------------~il~~~p~~~~~~I~-H~~~g~~-~~~~~~~~~g~y~~~sg~~-------------------~~- 191 (268)
T 1j6o_A 149 ---------------EILRTESLPEKRGVI-HAFSSDY-EWAKKFIDLGFLLGIGGPV-------------------TY- 191 (268)
T ss_dssp ---------------HHHHHSCCCSSCEEE-TTCCSCH-HHHHHHHHHTEEEEECGGG-------------------GC-
T ss_pred ---------------HHHHhcCCCCCCEEE-EcCCCCH-HHHHHHHHCCCeEEecccc-------------------cc-
Confidence 112222 345666 9876554 5666666667555433211 00
Q ss_pred EcCCCCCcccHHHHHHHHhc-C-CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009410 339 MSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLT 416 (535)
Q Consensus 339 ~~p~~r~~~~~~~~~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~ 416 (535)
+ + ...++++++. | -+++++||. |+.... ++...++.. ..+......+.+..++|.++.-+..
T Consensus 192 ---~-~----~~~l~~~i~~~~~driL~eTD~-P~~~~~------~~~g~~n~p-~~~~~~~~~la~~~~~~~e~~~~i~ 255 (268)
T 1j6o_A 192 ---P-K----NEALREVVKRVGLEYIVLETDC-PFLPPQ------PFRGKRNEP-KYLKYVVETISQVLGVPEAKVDEAT 255 (268)
T ss_dssp ---T-T----CHHHHHHHHHHCGGGEEECCCB-TSCCCG------GGTTSCCCG-GGHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ---c-c----hHHHHHHHHhCChhhEEEecCC-CCCCCc------ccCCCCCch-HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 0 0 0234444443 2 569999995 332221 111111100 0122223233232469999999999
Q ss_pred hHHHHHHcCCC
Q 009410 417 STECARIFNVY 427 (535)
Q Consensus 417 T~~~A~~lgl~ 427 (535)
+.|+.++|++.
T Consensus 256 ~~Na~rlf~l~ 266 (268)
T 1j6o_A 256 TENARRIFLEV 266 (268)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHhCcc
Confidence 99999999873
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-05 Score=76.93 Aligned_cols=141 Identities=13% Similarity=0.037 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCH
Q 009410 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (535)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 294 (535)
+.+..+++.|++.|+++.+|+........ +..++. ..+.. .+.|+...
T Consensus 192 ~~f~~~f~~A~~~gl~~~~HagE~~~~~~----------------------------i~~al~---~lg~~-RIgHgv~l 239 (367)
T 3iar_A 192 PGHVQAYQEAVKSGIHRTVHAGEVGSAEV----------------------------VKEAVD---ILKTE-RLGHGYHT 239 (367)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHHH----------------------------HHHHHH---TSCCS-EEEECGGG
T ss_pred HHHHHHHHHHHHcCCeeEEecCCcCChHH----------------------------HHHHHH---ccCCc-eeeeeeee
Confidence 68899999999999999999954432211 111111 12333 47888665
Q ss_pred HH-HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCCh
Q 009410 295 DA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373 (535)
Q Consensus 295 ~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~ 373 (535)
.. .++++.+++.|+.+..||+++.. .+... . ....+++.++++|++++++||++.. .
T Consensus 240 ~~d~~l~~~l~~~~i~le~cP~SN~~-------------l~~~~----~----~~~hPi~~ll~~Gv~v~l~TDdp~~-~ 297 (367)
T 3iar_A 240 LEDQALYNRLRQENMHFEICPWSSYL-------------TGAWK----P----DTEHAVIRLKNDQANYSLNTDDPLI-F 297 (367)
T ss_dssp GGCHHHHHHHHHTTCEEEECHHHHHH-------------TSSSC----T----TSCCHHHHHHHTTCCEEECCBSHHH-H
T ss_pred cCCHHHHHHHHhCCcEEEECHHHHHH-------------hCCCC----C----cccChHHHHHHCCCEEEECCCCccc-c
Confidence 32 26899999999999999986322 21100 0 0013489999999999999995332 1
Q ss_pred hhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 374 TQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.. .+...+. .+....|+++++ ++.+|.|+++.-.++
T Consensus 298 ~~-------------~l~~e~~----~a~~~~glt~~e-l~~l~~nsi~~sf~~ 333 (367)
T 3iar_A 298 KS-------------TLDTDYQ----MTKRDMGFTEEE-FKRLNINAAKSSFLP 333 (367)
T ss_dssp TC-------------CHHHHHH----HHHHHHCCCHHH-HHHHHHHHHHTSSSC
T ss_pred CC-------------CHHHHHH----HHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 11 0111222 233344799999 788899999887764
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=83.38 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=96.0
Q ss_pred CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHH
Q 009410 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (535)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 275 (535)
++.++.+..+. ...+++.+.++++.|++.|+++.+|+........ +..+
T Consensus 161 ~vvG~dL~g~E---~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----------------------------i~~a 209 (326)
T 3pao_A 161 AFIAVGLDSSE---VGHPPSKFQRVFDRARSEGFLTVAHAGEEGPPEY----------------------------IWEA 209 (326)
T ss_dssp GCSEEEEESCC---TTCCGGGGHHHHHHHHHTTCEECEEESSSSCHHH----------------------------HHHH
T ss_pred cceeeCCCCCC---CCCCHHHHHHHHHHHHHcCCceeeecCCCCCHHH----------------------------HHHH
Confidence 56666654322 2235678899999999999999999954422211 1112
Q ss_pred HHHHHhcCCCEEEEEccCHHH-HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHH
Q 009410 276 IRLAEFVNTPLYVVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354 (535)
Q Consensus 276 ~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 354 (535)
+. ..+.. .+.|+..... .++++.+++.|+.+..||+++.....-. .+. . .++++
T Consensus 210 l~---~lg~~-rigHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l~~~~-----------~~~-~---------hPi~~ 264 (326)
T 3pao_A 210 LD---LLKVE-RIDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFD-----------DMS-Q---------HTILD 264 (326)
T ss_dssp HH---TTCCS-SEEECGGGGGCHHHHHHHHHHTCCEEECHHHHHHTTSSS-----------SGG-G---------CCHHH
T ss_pred Hh---cCCCc-eeeeeeeecccHHHHHHHHHcCCeEEECchhHHHhCCCC-----------Ccc-c---------ChHHH
Confidence 21 11222 2678866542 2689999999999999998632211100 000 1 12899
Q ss_pred HHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 355 ALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 355 ~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
++++|++++++||++..... . +...+. .+....++++++ ++.+|.|+++.-.+
T Consensus 265 ll~~Gv~V~l~TDdp~~~~~-~-------------l~~e~~----~a~~~~~l~~~~-l~~l~~nsi~~sf~ 317 (326)
T 3pao_A 265 MLERGVKVTVNSDDPAYFGG-Y-------------VTENFH----ALQQSLGMTEEQ-ARRLAQNSLDARLV 317 (326)
T ss_dssp HHHHTCCEEECCBSHHHHTC-C-------------HHHHHH----HHHHHHCCCHHH-HHHHHHHHHHTCC-
T ss_pred HHHCCCeEEEeCCCcccCCC-C-------------HHHHHH----HHHHHcCCCHHH-HHHHHHHHHHHHHh
Confidence 99999999999996432111 1 112222 223334799999 58889999987766
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.2e-05 Score=71.40 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhc-CCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+..++++++.++.|..+++.+.... . ..+.+..+++.|.++ |+++.+|+......
T Consensus 102 ~~~~el~~~~~~~g~~gi~~~g~~~---~-~~~~~~~~~~~a~~~~~lpv~iH~~~~~~~-------------------- 157 (272)
T 3cjp_A 102 DTNSYIEENIVNNKLVGIGELTPAS---G-QIKSLKPIFKYSMDSGSLPIWIHAFNPLVL-------------------- 157 (272)
T ss_dssp HHHHHHHHHTTTTTCSEEEEECCCT---T-CGGGGHHHHHHHHHTTCCCEEECCSTTCCH--------------------
T ss_pred HHHHHHHHHHHhcCceEEEecCCCC---C-ccHHHHHHHHHHHhccCCcEEEeCCCCCcc--------------------
Confidence 4556666655457888988653221 2 567899999999999 99999998643110
Q ss_pred cCChhhHHHHHHHHHHHHHhc-CCCEEEEEccCHHHHHHHHHHHH-cCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 262 SRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
.......++.+.+ +.++++.|+......+.++.+++ .| +...++.. +
T Consensus 158 --------~~~~~~~~~l~~~p~l~iv~~H~G~~~~~~~~~~~~~~~~--~y~~~s~~-------------------~-- 206 (272)
T 3cjp_A 158 --------QDIKEIAELCKAFPKVPVILGHMGGSNWMTAVELAKEIQN--LYLDTSAY-------------------F-- 206 (272)
T ss_dssp --------HHHHHHHHHHHHSTTSCEEEGGGGGGGHHHHHHHHHHCTT--EEEECTTC-------------------S--
T ss_pred --------ccHHHHHHHHHHCCCceEEEECCCCccHHHHHHHHHhCCC--EEEEeccc-------------------c--
Confidence 0111222233333 45777778766543344444443 23 33222110 0
Q ss_pred cCCCCCcccHHHHHHHHh-cCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 340 SPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~-~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
. ...+..+++ -+-++++|||. |+.... ... ..+...+++.++.-+....
T Consensus 207 ----~----~~~~~~~~~~~~dril~gSD~-P~~~~~----------------~~~-----~~~~~~~l~~~~~~~i~~~ 256 (272)
T 3cjp_A 207 ----S----TFVLKIVINELPLKCIFGTDM-PFGDLQ----------------LSI-----EAIKKMSNDSYVANAVLGD 256 (272)
T ss_dssp ----C----HHHHHHHHHHSTTTEECCCCT-TSSCHH----------------HHH-----HHHHHHCSSHHHHHHHHTH
T ss_pred ----c----HHHHHHHHHhCCCeEEEeCCC-CCCChH----------------HHH-----HHHHhcCCCHHHHHHHHHH
Confidence 0 012333333 25789999995 432111 011 1112246999999999999
Q ss_pred HHHHHcCCC
Q 009410 419 ECARIFNVY 427 (535)
Q Consensus 419 ~~A~~lgl~ 427 (535)
|+++++|++
T Consensus 257 Na~rl~~l~ 265 (272)
T 3cjp_A 257 NISRLLNIE 265 (272)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhCcc
Confidence 999999984
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.5e-05 Score=74.77 Aligned_cols=127 Identities=9% Similarity=-0.003 Sum_probs=70.7
Q ss_pred cccccccccccccC----C----CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeee
Q 009410 106 GGIDPHTHLAMEFM----G----SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (535)
Q Consensus 106 GlID~H~H~~~~~~----g----~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (535)
++||+|+|++.... + .............+-+.||+..+-..........+.+....+..+.....+ .++
T Consensus 13 ~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~~~~~p~r~~~~---~~v 89 (288)
T 2ffi_A 13 TAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGV---VML 89 (288)
T ss_dssp CCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCB---BCC
T ss_pred CceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHHHHHCCCCEEEE---EEe
Confidence 79999999976410 0 000122334455567899997764421101111122222222222211111 111
Q ss_pred ecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
.... ..++++++. +.|+.++++...+.+......+.+..+++.|.++|+++.+|....
T Consensus 90 ~p~~--~~~el~~~~-~~g~~Gi~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 147 (288)
T 2ffi_A 90 ERDV--EQATLAEMA-RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQVA 147 (288)
T ss_dssp CSSC--CHHHHHHHH-TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCTT
T ss_pred CCCC--CHHHHHHHH-HCCCeEEEEecccCCCCCcccHHHHHHHHHHHHCCCeEEEeechh
Confidence 1111 135676766 568999988766543334566789999999999999999998643
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=71.02 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCC-----CCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
+..++++++.++.|+.++++...+.. ...+..+.+..+++.|.++|+++.+|...
T Consensus 108 ~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~ 167 (327)
T 2dvt_A 108 AATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (327)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHcCCeEEECCCC
Confidence 36777888775679999998766531 23456778999999999999999999854
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00022 Score=66.75 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=63.4
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC--ChH---HHHHHHH-------HHh-cccccccce
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLT---AGFEAYE-------KKA-KNSCMDYGF 173 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~--~~~---~~~~~~~-------~~~-~~~~~~~~~ 173 (535)
|||+|+|+... . .+ ....+...||+.++..+..... ... +.++... +.. ...+..+|+
T Consensus 2 ~iDtH~Hld~~--~---~~----~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~v~~~~Gi 72 (261)
T 3guw_A 2 YFDSHLHSEGL--G---FS----ELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGI 72 (261)
T ss_dssp CCBCCCCGGGC--C---HH----HHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTTTCEECCBCCC
T ss_pred eEEeccCCCCC--C---hH----HHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 79999999754 2 11 2456788999999866433211 111 2222222 111 123444555
Q ss_pred eeeeecCChhhHHHHHHHHHHcCCCEEE-EEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 174 HMAITKWDEVVSDEMEVMVKEKGINSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
++..... .. ++..+..++..+.++. +.+++. .....+.+++.++.|+++++|+.+|+..
T Consensus 73 HP~~~~~--~~-~~~~~~l~~~~vvaIGEiGLD~~--~~~Q~~~f~~ql~lA~e~~lPv~iH~r~ 132 (261)
T 3guw_A 73 HPRCIPP--DY-EFVLGYLEEGEWVAFGEIGLELV--TDEEIEVLKSQLELAKRMDVPCIIHTPR 132 (261)
T ss_dssp CGGGCCT--TT-HHHHHHHTTSCCSCEEEEECSSC--CHHHHHHHHHHHHHHHHHTCCEEEECCS
T ss_pred Ccccccc--cH-HHHHHHhCcCCeEEEEEecCCCC--hHHHHHHHHHHHHHHHHhCCeEEEEcCC
Confidence 5432211 11 2222223234555554 334442 1223567899999999999999999964
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00074 Score=65.03 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
++..++++++.++.|..++++...+.+. ....+.+..+++.|.++|+++.+|....
T Consensus 103 ~~~~~el~~~~~~~g~~gi~~~~~~~~~-~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 158 (307)
T 2f6k_A 103 LDAVKTVQQALDQDGALGVTVPTNSRGL-YFGSPVLERVYQELDARQAIVALHPNEP 158 (307)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESEETTE-ETTCGGGHHHHHHHHTTTCEEEEECCCC
T ss_pred HHHHHHHHHHHhccCCcEEEEeccCCCC-CCCcHhHHHHHHHHHHcCCeEEECCCCC
Confidence 4566778777756799999987766442 3455789999999999999999998643
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0042 Score=61.23 Aligned_cols=132 Identities=12% Similarity=0.069 Sum_probs=71.8
Q ss_pred ecccccccccccccC-C-----CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcc-----cccccce
Q 009410 105 PGGIDPHTHLAMEFM-G-----SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-----SCMDYGF 173 (535)
Q Consensus 105 PGlID~H~H~~~~~~-g-----~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 173 (535)
+-|||+|+|+..... + ....+++......+...||+.++..+.... .....++... ..+. .+..+|.
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g~~l~-~s~~~~~La~-~~~~~~~~~l~~tvGv 89 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIA-ESQSAIELVS-SVKDLSPLKLYHTIGV 89 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHH-HHHHHHHHHH-HHTTTCSSEEEEEECC
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEecCCHH-HHHHHHHHHH-HCCCccccceEEEEEE
Confidence 469999999987511 1 112356667788889999999886532211 2233333222 2222 2444555
Q ss_pred eeeeec-CCh------------------------------------hhHHHHHHHHHH------cCCCEEE-EEeecCCC
Q 009410 174 HMAITK-WDE------------------------------------VVSDEMEVMVKE------KGINSFK-FFMAYKGS 209 (535)
Q Consensus 174 ~~~~~~-~~~------------------------------------~~~~~~~~~~~~------~g~~~ik-~~~~~~~~ 209 (535)
|..... ... +..+++..++++ ..+..|. +.++|...
T Consensus 90 HP~~~~e~~~~~~~~~~~~~~~~p~~d~~~~~~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~vvAIGEiGLDy~~~ 169 (401)
T 3e2v_A 90 HPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRF 169 (401)
T ss_dssp CGGGGGGGC------------------CHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHCSTTCSEEEEEEEEEETTCT
T ss_pred CcChhhhcccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHhhhhccCCcEEEEEEEeCCCCcC
Confidence 542111 000 124455555422 1223333 44555321
Q ss_pred Cc----CCHHHHHHHHHHHHhc----CCeEEEEcCCh
Q 009410 210 FM----INDELLIEGFKRCKSL----GALAMVHAENG 238 (535)
Q Consensus 210 ~~----~~~~~l~~~~~~a~~~----g~~v~~H~~~~ 238 (535)
.. .-.+.+++.++.|.++ ++++.+|+...
T Consensus 170 ~~~~~e~Q~~~F~~QL~LA~e~~~~~~lPv~IH~R~A 206 (401)
T 3e2v_A 170 HYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSA 206 (401)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSSHHHHTSCEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhccCCCeEEEEecch
Confidence 11 1245688889999999 99999999543
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00081 Score=64.71 Aligned_cols=128 Identities=9% Similarity=-0.094 Sum_probs=66.3
Q ss_pred cccccccccccc---CCCC--------chhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceee
Q 009410 107 GIDPHTHLAMEF---MGSE--------TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM 175 (535)
Q Consensus 107 lID~H~H~~~~~---~g~~--------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (535)
.||+|.|++... .... ..-........+-..||+.++-...... ....+...+.......-+++..
T Consensus 5 ~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~~~~~---~~~n~~l~~la~~~p~~~g~vg 81 (303)
T 4do7_A 5 RIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAG---RDETAFLLELACDEARIAAVVG 81 (303)
T ss_dssp CEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEECCSSS---HHHHHHHHHHHTTCTTEEEEEE
T ss_pred EEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEccCCc---HHHHHHHHHHHHhCCCeEEEEE
Confidence 499999998641 0011 0112233455567899998875432211 1111222222222111111111
Q ss_pred eeecCChhhHHHHHHHHHHcCCCEEEEEeecCCCC--cCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 176 AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
.......+..++++++. ..|+.++++...+.... .+..+.+...++.+.++|+++.+|....
T Consensus 82 ~v~~~~~~~~~~L~~l~-~~gv~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~~ 145 (303)
T 4do7_A 82 WEDLRAPQLAERVAEWR-GTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFER 145 (303)
T ss_dssp CCCTTCTTHHHHHTTCC-SSCEEEEECCGGGSSCHHHHHHCHHHHHHHHHHHHTTCEEEECCCGG
T ss_pred EeCCCCchHHHHHHHHh-hcCceEEEecCcCCCCccccccCHHHHHHHHHHHHCCCeEEEecCHH
Confidence 11112223455666655 56777777654332111 2345678899999999999999998643
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0085 Score=57.08 Aligned_cols=227 Identities=13% Similarity=0.034 Sum_probs=120.2
Q ss_pred HHHHHHHhCCcEEEeccccCCCC---ChHHHHHHHHHHhcccccccceeeeeecCC-hhhHHHHHHHHHHcCCCEEEEEe
Q 009410 129 SGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFM 204 (535)
Q Consensus 129 ~~~~~~l~~GvTtv~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~ 204 (535)
.....+-+.||+..+-....... ...+.+....+..+.. +....++.... .+..+++++ ..+.|+.++++..
T Consensus 51 ~~l~~md~~GV~~~V~~~~~~~~~~~~~N~~~~~~~~~~p~r---~~~~~~v~p~~~~~a~~eL~~-~~~~g~~Gi~~~~ 126 (291)
T 3irs_A 51 LMFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAKAYPDK---FHPVGSIEAATRKEAMAQMQE-ILDLGIRIVNLEP 126 (291)
T ss_dssp HHHHHHHHTTCCEEEEECCEETTTEECCHHHHHHHHHHSTTT---EEEEEECCCSSHHHHHHHHHH-HHHTTCCCEEECG
T ss_pred HHHHHHHHCCCCEEEEcCCCccccccccHHHHHHHHHHCCCc---EEEEEecCccCHHHHHHHHHH-HHhCCCeEEEEeC
Confidence 34455678999987754322110 1223333333333221 11122222222 456677777 5578999999875
Q ss_pred ecCC-CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc-
Q 009410 205 AYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV- 282 (535)
Q Consensus 205 ~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 282 (535)
.+.+ ...++.+.+..+++.|.++|+++.+|...... - .. .+ ..| .. ...+...+
T Consensus 127 ~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~~~~------------~-~~-~~--~~p-----~~---~~~v~~~~P 182 (291)
T 3irs_A 127 GVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNAG------------P-DI-TY--TNP-----EH---IDRVLGDFP 182 (291)
T ss_dssp GGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSSSCS------------S-SG-GG--GCH-----HH---HHHHHHHCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCCCCC------------C-CC-cc--CCH-----HH---HHHHHHHCC
Confidence 5432 23356778999999999999999999964310 0 00 00 000 11 22333333
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhc-C-C
Q 009410 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G-I 360 (535)
Q Consensus 283 ~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~-G-v 360 (535)
+.++++.|+..+...+.++.+.+. -++...+... . .. .| ....+.++++. | -
T Consensus 183 ~l~ivl~H~G~~~~~~~~~l~~~~-~nvy~~~Sg~---------~-------~~---~~------~~~~~~~~~~~~g~d 236 (291)
T 3irs_A 183 DLTVVSSHGNWPWVQEIIHVAFRR-PNLYLSPDMY---------L-------YN---LP------GHADFIQAANSFLAD 236 (291)
T ss_dssp TCCEEEEGGGTTCHHHHHHHHHHC-TTEEEECGGG---------G-------SS---ST------THHHHHHHHTTGGGG
T ss_pred CCEEEeecCCcccHHHHHHHHhHC-CCeEecHHHH---------h-------cc---CC------CHHHHHHHHHHhCcc
Confidence 678889998765443444443222 2343333210 0 00 00 01224444442 2 3
Q ss_pred eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
++++|||+ |+... . ..+.. +...++|.++.-+..+.|++++|++..+-|
T Consensus 237 rllfgSD~-P~~~~----------------~----~~~~~-~~~l~l~~e~~~~i~~~NA~rl~~~~~~~~ 285 (291)
T 3irs_A 237 RMLFGTAY-PMCPL----------------K----EYTEW-FLTLPIKPDAMEKILHGNAERLLAQAGREG 285 (291)
T ss_dssp TBCCCCCB-TSSCH----------------H----HHHHH-HHTSSCCHHHHHHHHTHHHHHHHHHSCC--
T ss_pred eEEEecCC-CCCCH----------------H----HHHHH-HHHCCCCHHHHHHHHHHHHHHHhCcccccc
Confidence 48999995 33211 1 11222 223479999999999999999999966555
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0019 Score=63.77 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=93.5
Q ss_pred CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHH
Q 009410 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (535)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 275 (535)
++.++.+..+. ...++..+..+++.|++.|+++.+|+.......+ .+..+
T Consensus 181 ~VvG~dL~g~E---~~~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~---------------------------~i~~a 230 (380)
T 4gxw_A 181 EVAGIGIDYRE---NDRPPELFWKAYRDARAAGFRTTAHAGEFGMPWR---------------------------NVETA 230 (380)
T ss_dssp TBCEEEEESCC---TTCCGGGGHHHHHHHHHTTCEEEEEESCTTCCHH---------------------------HHHHH
T ss_pred CEEEEeecCCC---CCCCHHHHHHHHHHHHHcCCCeeeeccccCCchH---------------------------HHHHH
Confidence 44555553221 1234667889999999999999999965321111 12222
Q ss_pred HHHHHhcCCCEEEEEccCH-HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHH
Q 009410 276 IRLAEFVNTPLYVVHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354 (535)
Q Consensus 276 ~~~~~~~~~~~~~~H~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 354 (535)
++ ..+.. .+.|.... +..++++.+++.++++..||+++... +.. |. ......-+++.
T Consensus 231 l~---~lga~-RIgHG~~~~~d~~L~~~l~~~~I~lEvCP~SN~~l-------------~~v----~~-~~~~~~HP~~~ 288 (380)
T 4gxw_A 231 VD---LLHVD-RVDHGYTIVDNPELCARYAERGIVFTVVPTNSYYL-------------RTL----PP-DQWAERHPMRK 288 (380)
T ss_dssp HH---TSCCS-EEEECGGGGGCHHHHHHHHHHTCEEEECTTCHHHH-------------HHS----CT-TTHHHHCGGGG
T ss_pred HH---HcCCc-ccccceeeccChHHHHHHHHhCceeEECCcchhhh-------------ccc----cc-ccccccChHHH
Confidence 22 11222 36666432 22277889999999999999864221 000 00 00000113778
Q ss_pred HHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 355 ALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 355 ~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
+++.|++++++||.... |. +.+...+..+.+..|++.++.. ..+.|+.+.-.++
T Consensus 289 l~~~Gv~vtinTDDp~~-----------f~-------t~Ls~Ey~~~~~~~gls~~dl~-~l~~nsi~~sF~~ 342 (380)
T 4gxw_A 289 MPGLGLKIHPNTDDPTL-----------HK-------VNPSEAWELMFSHFGFTIADLK-QFMLNGIDGAWVD 342 (380)
T ss_dssp TGGGTCEEEECCBSHHH-----------HT-------CCHHHHHHHHHHTSCCCHHHHH-HHHHHHHHHSSSC
T ss_pred HHHCCCeEEECCCCchh-----------hC-------CCHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHcCC
Confidence 89999999999995431 11 0122233344556789999964 5678887776653
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.066 Score=51.94 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
+..++++++. +.|..++++...+.+ ..++.+.+..+++.|.++|+++.+|...
T Consensus 128 ~a~~el~~~~-~~g~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~~lpv~iH~~~ 180 (334)
T 2hbv_A 128 LACKEASRAV-AAGHLGIQIGNHLGD-KDLDDATLEAFLTHCANEDIPILVHPWD 180 (334)
T ss_dssp HHHHHHHHHH-HHTCCCEEEESCBTT-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred HHHHHHHHHH-HcCCeEEEECCCCCC-CCCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence 4677888887 789999988765544 3456788999999999999999999854
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.041 Score=53.44 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
+..++++++.++.|..++++...+.+ ..++.+.+..+++.|.++|+++.+|...
T Consensus 124 ~a~~el~~~~~~~g~~Gv~l~~~~~~-~~l~d~~~~~~~~~~~e~~lpv~iH~~~ 177 (336)
T 2wm1_A 124 LAVKEMERCVKELGFPGVQIGTHVNE-WDLNAQELFPVYAAAERLKCSLFVHPWD 177 (336)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHccCCeEEEECCcCCC-CCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence 46677888775679999998766544 3346678999999999999999999854
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00086 Score=70.79 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=63.2
Q ss_pred EEEccCHHH-HHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeC
Q 009410 288 VVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (535)
Q Consensus 288 ~~H~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgt 366 (535)
+.|+..... ..+++.+++.|+++..||+++. .....+.. -++..++++|++++|||
T Consensus 541 IgHGv~l~edp~Li~lla~~~I~vevCP~SN~-------------kl~~~~~~----------HPi~~ll~~Gv~VsLgT 597 (701)
T 2a3l_A 541 IAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN-------------SLFLDYHR----------NPFPVFFLRGLNVSLST 597 (701)
T ss_dssp CSCCGGGGGCHHHHHHHHHHTCCEEECHHHHT-------------TTTCCSTT----------CSHHHHHHTTCCEEECC
T ss_pred EEEEeecccCHHHHHHHHHcCCcEEECccchh-------------hhccCchH----------hHHHHHHHCCCcEEEeC
Confidence 466655443 1458889999999999998732 11111111 12889999999999999
Q ss_pred CCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 367 DHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
|+.......+ ..+...+. .+....+++..++.++ |.|++++.+++
T Consensus 598 Ddp~~~~~t~-----------~dL~~Ey~----~aa~~~~ls~~dl~~l-a~Ns~~asfl~ 642 (701)
T 2a3l_A 598 DDPLQIHLTK-----------EPLVEEYS----IAASVWKLSACDLCEI-ARNSVYQSGFS 642 (701)
T ss_dssp BCHHHHCCSS-----------SHHHHHHH----HHHHHHTCCHHHHHHH-HHHHHHHSCCC
T ss_pred CCccccCCCC-----------cCHHHHHH----HHHHHcCCCHHHHHHH-HHHHHHHhCCC
Confidence 9654311100 00111222 2222336999997666 99999999985
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.037 Score=53.16 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
...+++++..++.|..++++.....+ ..++...+..+++.+.++|+++.+|...
T Consensus 111 ~a~~el~r~~~~~G~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~g~pv~iH~g~ 164 (312)
T 3ij6_A 111 SACKVISSIKDDENLVGAQIFTRHLG-KSIADKEFRPVLAQAAKLHVPLWMHPVF 164 (312)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESEETT-EETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCceEeccCCCCC-CCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence 46778888775678899998765544 3456678999999999999999999854
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.12 Score=50.51 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
+...+++++.+++.|..++++...+.+ ..++...+..+.+.+.++|+++.+|....
T Consensus 141 ~~a~~El~r~~~~~G~~Gv~l~~~~~~-~~~~d~~~~p~~~~~~e~g~pV~iH~g~~ 196 (357)
T 3nur_A 141 EAAAREFERCINDLGFKGALIMGRAQD-GFLDQDKYDIIFKTAENLDVPIYLHPAPV 196 (357)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEESCBTT-BCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHHHhhcCceEEEeCCCCCC-CCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence 346788888766789999998754333 34567789999999999999999999654
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.038 Score=56.32 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=67.2
Q ss_pred CHHHHHHHHHH--HHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q 009410 213 NDELLIEGFKR--CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (535)
Q Consensus 213 ~~~~l~~~~~~--a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 290 (535)
+...+..+++. |++.|+++.+|+...... |. .+ ...+..++. .+.. .+.|
T Consensus 307 p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~----------g~---------~~----~~~i~~Al~----Lga~-RIgH 358 (508)
T 3lgd_A 307 SLHDYKEALMIPAKDGVKLPYFFHAGETDWQ----------GT---------SI----DRNILDALM----LNTT-RIGH 358 (508)
T ss_dssp CTGGGHHHHTHHHHTTCCCCBCCEECCSSCC----------SS---------TT----TTHHHHHHH----TTCS-SEEE
T ss_pred CHHHHHHHHHHHHHHHcCCceeeecccccCC----------CC---------Cc----HHHHHHHHh----cCCc-eeee
Confidence 45667777777 889999999999543210 00 00 011223332 2322 3678
Q ss_pred ccCHH-HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 291 VMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 291 ~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
+.... ..++++.+++.++++..||+++.....-. .+. ..++..++++|++++++||++
T Consensus 359 Gv~l~~dp~l~~~l~~~~I~levCP~SN~~l~~v~-----------~~~----------~hP~~~ll~~Gv~V~l~TDdp 417 (508)
T 3lgd_A 359 GFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLVS-----------DLR----------NHPVATLMATGHPMVISSDDP 417 (508)
T ss_dssp CTTGGGCHHHHHHHHHTTCCEEECHHHHHHTTSCS-----------SGG----------GCTHHHHHHTTCCEEECCBSH
T ss_pred eEecCccHHHHHHHHhcCCeEEECcchHHHhCCCC-----------Ccc----------cChHHHHHHCCCcEEEcCCCc
Confidence 87654 12788999999999999998743211100 010 123899999999999999964
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.3 Score=45.32 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=27.8
Q ss_pred cccccccccccc-CCCCchhhhHHHHHHHHhCCcEEEe
Q 009410 107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHI 143 (535)
Q Consensus 107 lID~H~H~~~~~-~g~~~~~~~~~~~~~~l~~GvTtv~ 143 (535)
+||.|+|+..+. .|..+.++....++.+.+.|++.+.
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~ 38 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTII 38 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 689999986431 2556666655568889999999997
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=1.7 Score=42.63 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
...+++++..++.|..++++.....+ ..++...+..+++.+.++|+++.+|....
T Consensus 160 ~a~~EL~r~~~~~G~~Gv~l~~~~~g-~~l~d~~~~pi~~~~~e~g~pV~iH~g~~ 214 (373)
T 4inf_A 160 WSAREIHRGARELGFKGIQINSHTQG-RYLDEEFFDPIFRALVEVDQPLYIHPATS 214 (373)
T ss_dssp HHHHHHHHHHHTSCCCCEEECSCBTT-BCTTSGGGHHHHHHHHHHTCCEEECCCCC
T ss_pred HHHHHHHHHHhhcCceEEEECCCCCC-CCCCCcchHHHHHHHHHcCCeEEECCCCC
Confidence 35678888875569999998655443 34567789999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 535 | ||||
| d2ftwa2 | 334 | c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas | 5e-74 | |
| d1kcxa2 | 334 | c.1.9.6 (A:67-400) Dihydropyrimidinase related pro | 6e-74 | |
| d1ynya2 | 332 | c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR | 3e-68 | |
| d2fvka2 | 384 | c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas | 8e-63 | |
| d1nfga2 | 330 | c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi | 1e-62 | |
| d1gkpa2 | 335 | c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta | 2e-60 | |
| d1gkra2 | 325 | c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au | 4e-46 | |
| d1xrta2 | 310 | c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui | 4e-38 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 2e-24 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 6e-11 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 2e-23 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 2e-11 | |
| d2vhla2 | 301 | c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat | 4e-23 | |
| d1i0da_ | 331 | c.1.9.3 (A:) Phosphotriesterase (parathion hydrola | 7e-22 | |
| d2eg6a1 | 343 | c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli | 1e-15 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 9e-15 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 8e-11 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 2e-14 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 8e-10 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 9e-14 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 9e-06 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 4e-13 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 4e-08 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 1e-12 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 3e-08 | |
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 1e-12 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 2e-12 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 9e-12 | |
| d1xrta1 | 112 | b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorot | 5e-12 | |
| d2r8ca1 | 102 | b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei | 2e-11 | |
| d1m7ja1 | 55 | b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas | 2e-09 | |
| d1onwa2 | 284 | c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catal | 3e-08 | |
| d2qs8a1 | 96 | b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {A | 2e-07 | |
| d1ejxc1 | 181 | b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o | 2e-07 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 4e-05 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 5e-05 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 1e-04 |
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 236 bits (602), Expect = 5e-74
Identities = 186/333 (55%), Positives = 235/333 (70%), Gaps = 6/333 (1%)
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K
Sbjct: 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKW 60
Query: 164 A-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A + DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FK
Sbjct: 61 ADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFK 120
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V
Sbjct: 121 RCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSV 180
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
TP+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PP
Sbjct: 181 CTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPP 240
Query: 343 IRASGHNKALQAA-LATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVW 398
IR K + LA G L VGTD+C F + QKA G DDF KIPNG+ E+RM +VW
Sbjct: 241 IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVW 300
Query: 399 DTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431
+ V +G+++ +VR TS+E ARIFN+YPRKG
Sbjct: 301 ENGVNTGKLTWCQFVRATSSERARIFNIYPRKG 333
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 236 bits (601), Expect = 6e-74
Identities = 158/333 (47%), Positives = 212/333 (63%), Gaps = 6/333 (1%)
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID +T+L G + DDFF G AALAGGTTM ID V+P G SL FE + +
Sbjct: 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEA 60
Query: 164 AKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A SC DY H+ IT W + V +E+EV+V++KG+NSF+ +MAYK + ++D L E F
Sbjct: 61 ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFT 120
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
K LGA+ +VHAENGD + + QKR++E+GITGPEGHALSRP LE EA RAI +A +
Sbjct: 121 FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRI 180
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
N P+Y+ VMS A + IA ARK G V GEP+ + L D + W ++ AA +V SPP
Sbjct: 181 NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 240
Query: 343 IRASGHNKALQAALAT-GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVW 398
+ +L G LQ+ G+ HC +++ QKA G D+F IP G+ EERM +VW
Sbjct: 241 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 300
Query: 399 DTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431
D V +G++ +V +TST A+IFN+YPRKG
Sbjct: 301 DKAVATGKMDENQFVAVTSTNAAKIFNLYPRKG 333
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 220 bits (562), Expect = 3e-68
Identities = 151/332 (45%), Positives = 203/332 (61%), Gaps = 7/332 (2%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
GGIDPHTHL M F G+ T DDFF+G AA GGTT +DF + G SL + + +KA
Sbjct: 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKA 60
Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + +DYGFH+ I + ++ V +E+E ++ +GI S K FMAYK F +DE L + +
Sbjct: 61 RGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVK 120
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
K LGAL VHAENGD + K+ + G T P HA +RPP EGEAT RAI L
Sbjct: 121 AKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAG 180
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+ LYVVHV A++ IA+AR+ G V GE L LD S + DF AKYV SPP+
Sbjct: 181 SQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDF-EGAKYVWSPPL 239
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGI---EERMHLVWD 399
R + + L +AL GILQ VG+DHC FN QK G DF KIPNG E+R+ +++
Sbjct: 240 REKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYS 299
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKG 431
V G+IS+ +V ++ST+ A++F ++PRKG
Sbjct: 300 EGVRQGRISLNQFVDISSTKAAKLFGMFPRKG 331
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 208 bits (530), Expect = 8e-63
Identities = 106/385 (27%), Positives = 169/385 (43%), Gaps = 59/385 (15%)
Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDF-----VIPINGSLTAGFE- 158
GGID H H+ + + +D +A+AGGTT + F +L +
Sbjct: 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60
Query: 159 -AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSF 210
E + DYG H+ + + ++ + E++ + G++S K FM Y
Sbjct: 61 DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYP-GL 119
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
I+D ++ + G M+HAENGD V + + E G+T H +SRP ++EGE
Sbjct: 120 QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGE 179
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
AT RAI LA ++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 180 ATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHH 239
Query: 331 FVT--------------------------AAKYVMSPPIRASGHNKALQAALATGILQLV 364
+KY+ SPPIR G K++ + G +V
Sbjct: 240 HGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIV 299
Query: 365 GTDHCAFNSTQKAFGID-------------DFRKIPNGI---EERMHLVWDTMVESGQI- 407
G+DHC++N +K +FR IPNG+ RM L++D G +
Sbjct: 300 GSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLT 359
Query: 408 SVTDYVRLTSTECARIFNVYPRKGA 432
S+ V + T A+++ +YP+KG+
Sbjct: 360 SMMKLVEIQCTNPAKVYGMYPQKGS 384
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 206 bits (525), Expect = 1e-62
Identities = 134/332 (40%), Positives = 191/332 (57%), Gaps = 9/332 (2%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
GGID HTH+ +++ D F + AA GGTT +DF G SL ++ A
Sbjct: 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMA 60
Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
S +DYG+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ +
Sbjct: 61 GGKSAIDYGYHIIVLDPTDSVIEELEVL-PDLGITSFKVFMAYRGMNMIDDVTLLKTLDK 119
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
G+L MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN
Sbjct: 120 AVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN 179
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
P+Y+VHV +++EE+ +A+ G R + E L L L DF AKYV +PP
Sbjct: 180 APIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPA 238
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGI---EERMHLVWD 399
RA + L AL G+ + V +DHC++ K G +DFR IPNG EER+ +V+
Sbjct: 239 RAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY- 297
Query: 400 TMVESGQISVTDYVRLTSTECARIFNVYPRKG 431
V G+IS+T +V L +T A++F ++P+KG
Sbjct: 298 QGVNEGRISLTQFVELVATRPAKVFGMFPQKG 329
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 200 bits (510), Expect = 2e-60
Identities = 125/336 (37%), Positives = 187/336 (55%), Gaps = 7/336 (2%)
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK- 165
IDPH H+ + FM + D +G AAL GGTT +I+ P G++ ++ KA+
Sbjct: 2 IDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEG 61
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
NS DY FHMA++K+DE ++ +V GI+SFK F++YK F ++D + + + K
Sbjct: 62 NSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 120
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG + H EN + V Q++++ G TGPE H SRP +E E T R E
Sbjct: 121 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGAT 180
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
YVVH+ A++ A+ G + E V+ +LD ++ A KY+MSPP+R
Sbjct: 181 GYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLRD 239
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDTMV 402
+ K L ALA G + VGTDHC F++ QK G + F IPNGI E+R++L++ V
Sbjct: 240 KRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGV 299
Query: 403 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 438
G++ + +V ST+ A++F ++PRKG I VGSD
Sbjct: 300 SRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSD 335
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 162 bits (410), Expect = 4e-46
Identities = 79/331 (23%), Positives = 135/331 (40%), Gaps = 11/331 (3%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV--IPINGSLTAGFEAYEKK 163
G +D H H+ ++ F +A GG T I+ P +L A E ++
Sbjct: 1 GVVDEHVHI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQA 59
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ +D+ + + +M G S ++D L E F+
Sbjct: 60 GQRLKVDFALYGGGVPGNLPEIRKMHDA-GAVGFKSMMAASVPGMFDAVSDGELFEIFQE 118
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
+ G++ +VHAEN + QK++ G + S+P E EA RA+ L +
Sbjct: 119 IAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAG 178
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
L V+HV + D +E I +A+ GQ V E L + ++PP+
Sbjct: 179 CRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGP----YMKVAPPV 234
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDT 400
R++ N L L G++ +G+DH K G D K NG E + ++
Sbjct: 235 RSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTN 294
Query: 401 MVESGQISVTDYVRLTSTECARIFNVYPRKG 431
V G++S+ V + + A++F +YP+KG
Sbjct: 295 GVNKGRLSLERLVEVMCEKPAKLFGIYPQKG 325
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 140 bits (352), Expect = 4e-38
Identities = 70/326 (21%), Positives = 119/326 (36%), Gaps = 24/326 (7%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKK 163
G ID H HL G +D SG A+AGG T + P + T +K
Sbjct: 1 GFIDIHVHLRD--PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKS 58
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
ITK + +KE G +F GS +++ ++ + +
Sbjct: 59 KSVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFT----DDGSPVMDSSVMRKALEL 114
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
LG M H E+ + +I G SR P E R LA+
Sbjct: 115 ASQLGVPIMDHCED----DKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTG 170
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+++ HV + ++E I ++ G ++ E + L+ + + +S A ++PP+
Sbjct: 171 GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSG----ANARVNPPL 226
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGI---EERMHLVWDT 400
R AL + GI+ TDH + +K + GI + +
Sbjct: 227 RKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK----ELVEFAMPGIIGLQTALPSAL-E 281
Query: 401 MVESGQISVTDYVRLTSTECARIFNV 426
+ G IS+ + + + ARI V
Sbjct: 282 LYRKGIISLKKLIEMFTINPARIIGV 307
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.9 bits (241), Expect = 2e-24
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 386 IPNG--IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 443
I G I + D +E G I L + R I VGSDAD++I
Sbjct: 5 IRGGRIINDDQSFYADVYLEDGLIKQIG-ENLIVPGGVKTIEANGRMVIIAVGSDADVVI 63
Query: 444 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503
++P+ ITA+SH S ++ N++EG G V I+ G++V+E+ ++V G G++I
Sbjct: 64 WDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIPR 123
Query: 504 RPFN-YLFHGLDKAD 517
+PF +L+ +
Sbjct: 124 KPFPEHLYQRVRIRS 138
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.4 bits (141), Expect = 6e-11
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHT 112
++LI+GG ++N ADVY+EDG++ + N+ V VK ++A G+ V+ G D
Sbjct: 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADV 61
Query: 113 HL 114
+
Sbjct: 62 VI 63
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 94.3 bits (234), Expect = 2e-23
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 386 IPNG---IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 442
I NG ++R D +VE+G I + E ++ + + I VG D DI+
Sbjct: 6 IKNGTVVNDDRYF-KSDVLVENGIIKEIS-KNIEPKEGIKVVDATDKLLLIDVGCDGDIV 63
Query: 443 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502
I++PN S I+ +HH +D N++EG +V G TI G +VW +++L+ V GSG+++
Sbjct: 64 IWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVP 123
Query: 503 MRPFNYLFHGLDKADAKYLSSLQAPVKR 530
PF +F G+++ D K + L V R
Sbjct: 124 RPPFGPVFDGIEQRD-KVRNELLRKVDR 150
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 60.4 bits (146), Expect = 2e-11
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++ G D
Sbjct: 1 TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDG 60
Query: 111 HTHLAMEFMGSETIDD---------FFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEA 159
+ D F G TT+ ++ + L+ G
Sbjct: 61 DIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGR 120
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEME 189
+ + I + D+V ++ +
Sbjct: 121 FVPRPPFG----PVFDGIEQRDKVRNELLR 146
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Score = 94.4 bits (233), Expect = 7e-22
Identities = 46/339 (13%), Positives = 77/339 (22%), Gaps = 38/339 (11%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSG-------------QAAALAGGTTMHIDFVIPINGS 152
G H H+ G F G + A AG T+ I
Sbjct: 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRD 75
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
++ E + G + S E + I + +
Sbjct: 76 VSLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIK 135
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
+ L A A TG + +GE
Sbjct: 136 VATTGKATPFQELVLKAAARASLA-----------------TGVPVTTHTAASQRDGEQQ 178
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
+ + + H D + + G + + + + + S
Sbjct: 179 AAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASASA-- 236
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS-TQKAFGIDDFRKIPNGIE 391
+ S RA + IL V D S R P+G+
Sbjct: 237 --LLGIRSWQTRALLIKALIDQGYMKQIL--VSNDWLFGFSSYVTNIMDVMDRVNPDGMA 292
Query: 392 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 430
V + E G + +T T AR + R
Sbjct: 293 FIPLRVIPFLREKG-VPQETLAGITVTNPARFLSPTLRA 330
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Score = 75.8 bits (185), Expect = 1e-15
Identities = 34/371 (9%), Positives = 79/371 (21%), Gaps = 41/371 (11%)
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN 166
D H HL M + + I + P + AY ++ +
Sbjct: 11 DWHLHLRDGDMLKTVV--------PYTSEIYGRAIVMPNLAPPVTT-VEAAVAYRQRILD 61
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
+ + S + + + F Y + N +
Sbjct: 62 AVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMP 121
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L + + G+ + +
Sbjct: 122 --VLERMEKIGMPLLVHGEV---------THADIDIFDREARFIESVMEPLRQRLTALKV 170
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
H+ + DA + + R +R+ L+ + + V Y + R
Sbjct: 171 VFEHITTKDAADYV---RDGNERLAATITPQHLMFNRNH-MLVGGVRPHLYCLPILKRNI 226
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQ 406
+ + +GTD +K + E
Sbjct: 227 HQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAG--CFNAPTALGSYATVFEEMN- 283
Query: 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD-TNV 465
++ + S + + + I ++ +
Sbjct: 284 -ALQHFEAFCSVNGPQFYGLPVNDT----------FIELVREEQQVAESIALTDDTLVPF 332
Query: 466 YEGRRVKGKVE 476
G V+ V+
Sbjct: 333 LAGETVRWSVK 343
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 68.8 bits (168), Expect = 9e-15
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 434 LVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 493
V AD+++++P I+ ++ H D N +EG + G+ V G+V + +
Sbjct: 49 YVFPGADLVVYDPQYRGTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVG 108
Query: 494 VPGSGKYIEMRPFNY 508
G GK + P +
Sbjct: 109 EKGWGKLLRREPMYF 123
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 57.3 bits (138), Expect = 8e-11
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYD- 60
Query: 115 AMEFMGSETIDDFFS 129
++ G+ ++
Sbjct: 61 -PQYRGTISVKTQHV 74
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 67.7 bits (165), Expect = 2e-14
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 491
I VGSDADI+IF+P+ ++ +HH +D N +EG V G+V ++ G V + +
Sbjct: 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQF 110
Query: 492 NVVPGSGKYIEMRPFN 507
GSG+YI+ F
Sbjct: 111 VGQAGSGQYIKRTTFE 126
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 54.6 bits (131), Expect = 8e-10
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+GGTVV A ADV +E VVA+ ++V + +DATG +V+P +
Sbjct: 1 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVNGA-EEIDATGCYVIPIAVGSDAD 59
Query: 114 LAMEFMG 120
+ +
Sbjct: 60 IVIFDPH 66
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 65.8 bits (160), Expect = 9e-14
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 399 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 458
D ++ G+I+ + Y I VGSDADI++++P + I + H
Sbjct: 20 DLGIKDGKITQIGGALGPAERTIDAAGRY--VFPIAVGSDADIVLWDPEAEMVIEQTAMH 77
Query: 459 SRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507
+ +D + YEG +VKG + + G+V+ + P GK+++ R +
Sbjct: 78 NAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKYK 126
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 43.1 bits (101), Expect = 9e-06
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+IK GT+V A AD+ ++DG + + + + + +DA G++V P + +
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPIAVGSDADI 60
Query: 115 AM 116
+
Sbjct: 61 VL 62
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 63.9 bits (155), Expect = 4e-13
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 386 IPNG--IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG----AILVGSDA 439
I NG + +++ G+I + + V KG I+VGSDA
Sbjct: 5 IKNGTIVTATDTYEAHLLIKDGKI-----AMIGQNLEEKGAEVIDAKGCYVFPIVVGSDA 59
Query: 440 DIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGK 499
D++IF+PN I+A +HH +D N +EG +V G+ + G V + + PG G+
Sbjct: 60 DLVIFDPNIERVISAETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQ 119
Query: 500 YIEMRPF 506
Y++ +
Sbjct: 120 YLKRAKY 126
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 50.1 bits (119), Expect = 4e-08
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IK GT+V A A + ++DG + + N+ +V+DA G +V P +
Sbjct: 2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE-EKGAEVIDAKGCYVFPIVVGSDAD 60
Query: 114 LAMEFMGSETI 124
L + E +
Sbjct: 61 LVIFDPNIERV 71
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 62.7 bits (152), Expect = 1e-12
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 387 PNGIEERMHLVWDTMVESGQIS-VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 445
+GI E D +V+ G+++ ++ + VGSDAD++I +
Sbjct: 14 SDGITEA-----DILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILD 68
Query: 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 502
+ ++ A S + ++G V G +T+ G VV E E+ V G G+++
Sbjct: 69 LDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVT 125
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 50.0 bits (119), Expect = 3e-08
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG---GIDPH 111
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMP G D
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDAD 63
Query: 112 THLA-MEFMGSETIDDFFSGQAAALAGGTTMH 142
+ ++ F S + G +
Sbjct: 64 LLILDLDIDTKVDASQFRSLHKYSPFDGMPVT 95
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 61.9 bits (150), Expect = 1e-12
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGI 108
++ L++G + + I DV V +G ++AV NI + V+D +G+ + P +
Sbjct: 6 AAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEIL 65
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE 158
+ + I+ A G M V + FE
Sbjct: 66 PGNDADLLVMTPELRIEQ-------VYARGKLM----VKDGKACVKGTFE 104
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 63.1 bits (153), Expect = 2e-12
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGID 109
++IK G + A A++ V +G V + +I+ +V+DA G F+ +PG D
Sbjct: 3 YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSD 62
Query: 110 PHTHLAMEF 118
+
Sbjct: 63 ADLVIWYPD 71
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 60.8 bits (147), Expect = 9e-12
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 505
+ IT + D +EG +K TI G++V++ E+ GKY++ R
Sbjct: 78 NSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK-RG 136
Query: 506 FNYLFHGLDKADAKY 520
+++ ++ ++
Sbjct: 137 KSFMCTPKNEWVTEW 151
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 112 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 60.4 bits (146), Expect = 5e-12
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 388 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY--PRKGAILVGSDADIIIFN 445
+E ++ + + + A I + + +GS ADI IF+
Sbjct: 16 QNLEGEFDILVENGK------IKKIDKNILVPEAEIIDAKGLIVCPTLKLGSPADITIFD 69
Query: 446 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488
PN + + ++ S+ G+ +KGKV TI G++V+++
Sbjct: 70 PNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 112
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 58.5 bits (141), Expect = 2e-11
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 53 SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ L + G +++ H + ++ +EDG + V + V+D GK +MP +
Sbjct: 1 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVP 60
Query: 110 PHTHLAMEFMG 120
+ G
Sbjct: 61 GAHADVLVVDG 71
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 51.3 bits (123), Expect = 2e-09
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105
++ GGTV++ + ADV V + AV + +D GK V P
Sbjct: 4 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 52.9 bits (125), Expect = 3e-08
Identities = 39/333 (11%), Positives = 75/333 (22%), Gaps = 56/333 (16%)
Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA 164
G ID H HL T + G T +
Sbjct: 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG-------------------- 40
Query: 165 KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRC 224
+ T + + + +M + + + K
Sbjct: 41 ----------LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDV 90
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
+ + V D A L A +R L
Sbjct: 91 AIIDRVIGVKCAISDHR----------------SAAPDVYHLANMAAESRVGGLLGGKPG 134
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVI-----GEPVVSGLVLDDSWLWHSDFVTAA-KYV 338
S A++ I + I + + + + + T
Sbjct: 135 VTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSS 194
Query: 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVW 398
+ P+ + A + +D G + G E + V
Sbjct: 195 IDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVA-GFETLLETVQ 253
Query: 399 DTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431
+V+ S++D +R ++ A N+ KG
Sbjct: 254 -VLVKDYDFSISDALRPLTSSVAGFLNL-TGKG 284
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Score = 47.2 bits (112), Expect = 2e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 53 SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+P
Sbjct: 1 SKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIE 60
Query: 109 DPHTHLAMEFMGSETID 125
+ G+ D
Sbjct: 61 SGKLADLIAVKGNPIED 77
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Score = 49.0 bits (117), Expect = 2e-07
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVM 104
+++ +V+ AD+ V+DG + A+ N +G +V+ A GK V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 105 PGGIDPHTH-----LAMEFMGSETIDDFFSGQ-AAALAGGTTMHID 144
G I+ + F G + G A A G I
Sbjct: 127 AGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIP 172
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (93), Expect = 4e-05
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+ G + H V + DG++ +V P + +++ G + P
Sbjct: 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVA 61
Query: 114 LAMEF-MGSETIDDFFSG 130
F + +G
Sbjct: 62 NLTAFTPDFKITKTIVNG 79
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 39.4 bits (91), Expect = 1e-04
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 54 KILIKGGTVV----NAHHQQIADVYVE-DGIVVAV--QPNINVGDDVKVLDATGKFVMPG 106
+ T+V + + V DG + V ++ + LD TGK VM
Sbjct: 5 PFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLE 64
Query: 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142
L + + + AG
Sbjct: 65 VGKSADLLVLNANPLDDLRALEHPALVIAAGHPVWR 100
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 535 | |||
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 100.0 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 100.0 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 100.0 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 100.0 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 100.0 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.97 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 99.88 | |
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 99.86 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.82 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 99.81 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.74 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.72 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.68 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.63 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.63 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.63 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.63 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.62 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.61 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.6 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.59 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.59 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.56 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.55 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.52 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.5 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.5 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.5 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.49 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.45 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.44 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.43 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 99.41 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.4 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.37 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.37 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.35 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.35 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.31 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.31 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.3 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.28 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.26 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.22 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.22 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.21 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.19 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.17 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.16 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 99.15 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.14 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.09 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.08 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.07 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 99.07 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.06 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 99.01 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.0 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 98.84 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 98.84 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.82 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 98.8 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 98.63 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.6 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.55 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.51 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.47 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 98.45 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.44 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.34 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.08 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.89 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 97.88 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 97.63 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 97.59 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 97.4 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 97.17 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 97.13 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.1 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 96.95 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 96.9 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.37 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 96.11 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 95.93 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 95.21 | |
| d2gwga1 | 342 | 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas | 93.86 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 92.69 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 92.62 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 92.57 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 88.78 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 84.65 |
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=9.7e-39 Score=312.82 Aligned_cols=328 Identities=57% Similarity=0.950 Sum_probs=293.5
Q ss_pred ecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCCh
Q 009410 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDE 182 (535)
Q Consensus 105 PGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (535)
|||||+|+|+..+..|....++++++.++++++||||++||....+. ...+.++....... ...++++++........
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 80 (334)
T d2ftwa2 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSE 80 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCH
T ss_pred CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcch
Confidence 99999999998776677888999999999999999999999766554 56666666666553 47788999888887777
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (535)
+..+++..+....|+.++|+|+.+......+.+.+.++++.+++.+..+.+|+++........+.+...|..++..|...
T Consensus 81 ~~~~e~~~l~~~~g~~~~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (334)
T d2ftwa2 81 QVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELS 160 (334)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred hhhHhHHHHHHhcCccccceeeccccccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCccccccc
Confidence 77788887776789999999988777677888999999999999999999999999888888888888999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
+|..+|...+.+.+.+++..+.++|+.|+++...++.++.+++.|.+|++++++++++++.+.+...++..+..+++.||
T Consensus 161 rp~~aE~~~v~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~~~~~~~PP 240 (334)
T d2ftwa2 161 RPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPP 240 (334)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSC
T ss_pred CcHHHHHHHHHHHHHHHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhccceEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999887766666678899999
Q ss_pred CCCc-ccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 343 IRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 343 ~r~~-~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
+|.. .++.++++.+..|...+++|||.|+....+..+.++|..+|. |+++.+++++..++.+++||++++++..|.
T Consensus 241 lR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g~lsl~~~v~~~s~ 320 (334)
T d2ftwa2 241 IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSS 320 (334)
T ss_dssp CCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTH
T ss_pred ccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcCCCCHHHHHHHHhH
Confidence 9976 568899999999999999999999999999776678999986 999999999988999999999999999999
Q ss_pred HHHHHcCCCCCCcc
Q 009410 419 ECARIFNVYPRKGA 432 (535)
Q Consensus 419 ~~A~~lgl~~~~Gs 432 (535)
|||++||+.+++|+
T Consensus 321 nPAki~gL~p~KGr 334 (334)
T d2ftwa2 321 ERARIFNIYPRKGR 334 (334)
T ss_dssp HHHHHTTCTTTSSC
T ss_pred HHHHHhCCCCCCCC
Confidence 99999999888885
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=100.00 E-value=8.3e-38 Score=307.28 Aligned_cols=330 Identities=38% Similarity=0.641 Sum_probs=289.8
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChhh
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVV 184 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (535)
|||+|+|+..+..+....++++++.++++.+||||++||..+.+. ...+.++...... ....+++.++......+.+.
T Consensus 1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~ 80 (335)
T d1gkpa2 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKT 80 (335)
T ss_dssp EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTH
T ss_pred CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCCccceeeEEEEecccccc
Confidence 899999998763344567899999999999999999999765543 5666666665555 44788999998888777777
Q ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCC
Q 009410 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264 (535)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (535)
..++..+. ..|+.++|+++.+.+....++..+.++++.+...|..+.+|+++..............+..++..|...+|
T Consensus 81 ~~el~~l~-~~G~~~~k~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p 159 (335)
T d1gkpa2 81 EGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRP 159 (335)
T ss_dssp HHHHHHHH-HTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSC
T ss_pred HHHHHHHH-hhhccccccccccCCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchh
Confidence 78888887 77999999999988878889999999999999999999999999887766677778889999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCC
Q 009410 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (535)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (535)
...+...+.+.+.+++..+.++|+.|+++.+.++.++.+++.|.+++++.++++++++.+.+...+. .+..++++||+|
T Consensus 160 ~~~E~~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~-~~~~~k~~PPlR 238 (335)
T d1gkpa2 160 EAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLR 238 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHH-HHHTTCCSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCc-hhcceecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999998876643211 124578999999
Q ss_pred CcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHH
Q 009410 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECA 421 (535)
Q Consensus 345 ~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A 421 (535)
...+++++|+++..|...+++|||.|.+...+..+.++|..+|+ |+++.+++++..+++.+++|+++++++.+.|||
T Consensus 239 s~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~~~v~~~S~nPA 318 (335)
T d1gkpa2 239 DKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAA 318 (335)
T ss_dssp CTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999776778999986 999999999988899999999999999999999
Q ss_pred HHcCCCCCCccccCCCC
Q 009410 422 RIFNVYPRKGAILVGSD 438 (535)
Q Consensus 422 ~~lgl~~~~GsI~~Gk~ 438 (535)
++||+.+++|+|++|++
T Consensus 319 ri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 319 KLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHTTCTTTSSSCCTTSB
T ss_pred HHhCCCCCCCeecCCCC
Confidence 99999889999999984
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.6e-38 Score=308.24 Aligned_cols=328 Identities=49% Similarity=0.831 Sum_probs=289.7
Q ss_pred ecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCCh
Q 009410 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDE 182 (535)
Q Consensus 105 PGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 182 (535)
||+||+|+|+..+..|....+++.++.++++++||||++||....+. ...+.++...+.. ....+++.++......++
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~~ 80 (334)
T d1kcxa2 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWYD 80 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCCT
T ss_pred CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCCc
Confidence 99999999998876677788999999999999999999999765543 4556666665555 458899999998888777
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (535)
+...++..+....|+..+|+|+.+.+.+..+.+.+.++++.+++.+..+.+|+++........+.+.+.|..+...|...
T Consensus 81 ~~~~el~~l~~~~g~~~~ki~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~ 160 (334)
T d1kcxa2 81 GVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALS 160 (334)
T ss_dssp THHHHHHHHHHTTCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred chHHHHHHHHHhccCceeeeeeccCCCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCC
Confidence 77788888776779999999998877778899999999999999999999999999888777777888899999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
+|..+|..++.+++.+++..+.++|+.|.++.+.++.++.+++.|..++++++++++.++...+...++..+..++..||
T Consensus 161 rp~~aE~~ai~r~~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~~~~~~~pP 240 (334)
T d1kcxa2 161 RPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 240 (334)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSC
T ss_pred CCHHHHHHHHHHHHHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHhcceEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999988887666555455667777
Q ss_pred CC-CcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 343 IR-ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 343 ~r-~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
.| ...+++++|+++++|...+++|||.|++...+..+.+.|..+|. |+++.+++++..++.++.+|++++++..|.
T Consensus 241 lr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g~isl~~~v~~~s~ 320 (334)
T d1kcxa2 241 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTST 320 (334)
T ss_dssp CCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTH
T ss_pred cCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 76 56788999999999999999999999999998776667999986 999999999988899999999999999999
Q ss_pred HHHHHcCCCCCCcc
Q 009410 419 ECARIFNVYPRKGA 432 (535)
Q Consensus 419 ~~A~~lgl~~~~Gs 432 (535)
|||++||+.+++|+
T Consensus 321 nPA~i~gL~p~KGr 334 (334)
T d1kcxa2 321 NAAKIFNLYPRKGR 334 (334)
T ss_dssp HHHHHHTCTTTSSC
T ss_pred HHHHHhCCCCCCCC
Confidence 99999999877884
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=100.00 E-value=5.5e-37 Score=300.78 Aligned_cols=326 Identities=46% Similarity=0.742 Sum_probs=286.8
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChh
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEV 183 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (535)
|+||+|+|+..+..|....++++++.++++.+||||++||....+. ...+.++...... .....+++++......+..
T Consensus 1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~ 80 (332)
T d1ynya2 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQ 80 (332)
T ss_dssp CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHH
T ss_pred CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccCccceeeEEEEeccccc
Confidence 8999999998766577788999999999999999999999765443 5667777766655 3477888888887777777
Q ss_pred hHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccC
Q 009410 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (535)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (535)
...++..+....|+.++|+|..+......+.+.+.++++.++..+..+.+|+++........+.....|...+..|...+
T Consensus 81 ~~~el~~~~~~~g~~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (332)
T d1ynya2 81 VLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTR 160 (332)
T ss_dssp HHHHHHHHHHTSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTS
T ss_pred hhHHHHHHHhhhcccceeeeeccccccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccc
Confidence 77888888877899999999887666677899999999999999999999999988877777788888999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCC
Q 009410 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (535)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (535)
|..+|..++.+.+.+++..+.++|+.|+++...++.++.+++.|.+|++++++||++++.+.+...++ .+..++++||+
T Consensus 161 p~~aE~~ai~r~~~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~-~g~~~k~~PPL 239 (332)
T d1ynya2 161 PPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDF-EGAKYVWSPPL 239 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSS-GGGGGCCSSCC
T ss_pred hhhHHHHHHHHHHHhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhc-cCceeEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988865543 34678999999
Q ss_pred CCcccHHHHHHHHhcCCeEEEeCCCCCCChhhh-hcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQK-AFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 344 r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~-~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
|...+++++|+++++|....++|||.|.+...+ ....++|+.+|. |++..++.++..++.++.||++++++..|.|
T Consensus 240 Rs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~lsl~~~v~~~s~n 319 (332)
T d1ynya2 240 REKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTK 319 (332)
T ss_dssp CCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHhHH
Confidence 999999999999999999999999999886543 333457888886 8999999999888889999999999999999
Q ss_pred HHHHcCCCCCCcc
Q 009410 420 CARIFNVYPRKGA 432 (535)
Q Consensus 420 ~A~~lgl~~~~Gs 432 (535)
||++||+.+++||
T Consensus 320 PAki~GL~p~KGt 332 (332)
T d1ynya2 320 AAKLFGMFPRKGT 332 (332)
T ss_dssp HHHHTTCTTTSSS
T ss_pred HHHHhCCCCCCCC
Confidence 9999999888996
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=100.00 E-value=1.3e-36 Score=297.42 Aligned_cols=324 Identities=41% Similarity=0.689 Sum_probs=280.8
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHh-cccccccceeeeeecCChh
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEV 183 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (535)
|+||.|+|+..+..+....+++.++.++++.+||||++||....+. ...+.++...... ....++++++........+
T Consensus 1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~~ 80 (330)
T d1nfga2 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDS 80 (330)
T ss_dssp CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHH
T ss_pred CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccchh
Confidence 8999999998763344577899999999999999999999765444 5666666666655 3477889888877776666
Q ss_pred hHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccC
Q 009410 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (535)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (535)
..+++..+. +.|+..+|+|+.+.+....+...+.++++.+.+.+..+.+|+++........+.+...|..+...|...+
T Consensus 81 ~~~el~~~~-~~Gv~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~r 159 (330)
T d1nfga2 81 VIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSR 159 (330)
T ss_dssp HHHHTTTGG-GGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTS
T ss_pred hHHHHhhhh-hhcccceeeeccccccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhccccc
Confidence 666776665 7899999999988777778899999999999999999999999988887777888889999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCC
Q 009410 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (535)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (535)
|..+|..++.+++.+++..+.++|+.|+++.+.++.+..+++.|++|++++++|+++++.+++....+ .+..++++||+
T Consensus 160 p~~aE~~av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~-~~~~~k~~PPL 238 (330)
T d1nfga2 160 PPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPA 238 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT-GGGGGCCSSCC
T ss_pred ChHHHHHHHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccc-cCceeeecCcC
Confidence 99999999999999999999999999999999999999999999999999999999999988865433 24678899999
Q ss_pred CCcccHHHHHHHHhcCCeEEEeCCCCCCChhh-hhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQ-KAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 344 r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~-~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
|...+++++|+.+++|...+++|||+|+.... +.....+|..+|. |+++.+++++ .++.+++|+++++++..+.|
T Consensus 239 R~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~-~~v~~~~l~l~~~v~~~S~n 317 (330)
T d1nfga2 239 RAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRISLTQFVELVATR 317 (330)
T ss_dssp CCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTTSSCHHHHHHHHTHH
T ss_pred CcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999987532 2222347988886 9999999998 58999999999999999999
Q ss_pred HHHHcCCCCCCcc
Q 009410 420 CARIFNVYPRKGA 432 (535)
Q Consensus 420 ~A~~lgl~~~~Gs 432 (535)
||++||+.+++||
T Consensus 318 PAki~gL~p~KGt 330 (330)
T d1nfga2 318 PAKVFGMFPQKGT 330 (330)
T ss_dssp HHHHTTCTTTSSS
T ss_pred HHHHhCCCCCCCC
Confidence 9999999889996
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=1.7e-34 Score=286.58 Aligned_cols=326 Identities=33% Similarity=0.537 Sum_probs=266.1
Q ss_pred cccccccccccccC-CCCchhhhHHHHHHHHhCCcEEEeccccCCCC-----ChHHHHHHHH-H-Hhcccccccceeeee
Q 009410 106 GGIDPHTHLAMEFM-GSETIDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYE-K-KAKNSCMDYGFHMAI 177 (535)
Q Consensus 106 GlID~H~H~~~~~~-g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-----~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 177 (535)
|+||+|+|+..+.. .....++++++.++++.+||||++||...... .....++... . ...+..++|+++...
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEEE
Confidence 89999999988721 12567889999999999999999999654332 2233333222 2 224578889888766
Q ss_pred ecCChhh--HHHH---H--HHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHH
Q 009410 178 TKWDEVV--SDEM---E--VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE 250 (535)
Q Consensus 178 ~~~~~~~--~~~~---~--~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 250 (535)
....... ..++ . ......|+..+|+|+.+.+ ...+.+.+.++++.+++.|..+.+|+++........+.+..
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~-~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~ 159 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEE 159 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT-TBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred eCCCCccchHHHHHhHHHHHHcccCcccccceeccccc-cccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhh
Confidence 5443211 1111 1 1123579999999987654 45688889999999999999999999999888888888899
Q ss_pred cCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCc-
Q 009410 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS- 329 (535)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~- 329 (535)
.|..++..|...+|..+|..++.+++.++++.+.++|+.|+++...++.++.+++.|++|+++++|||++++.+.+...
T Consensus 160 ~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~ 239 (384)
T d2fvka2 160 QGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHH 239 (384)
T ss_dssp TTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC-
T ss_pred cCCCChhhcccccccchhhHHHHHHHHHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765321
Q ss_pred -------------------------CccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcC-----
Q 009410 330 -------------------------DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG----- 379 (535)
Q Consensus 330 -------------------------~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~----- 379 (535)
....+..++++||+|...+++++|+.++.|...+++|||.|++..++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~ 319 (384)
T d2fvka2 240 HGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHR 319 (384)
T ss_dssp -------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGG
T ss_pred cccccccccccccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCCCHHHhcccccccc
Confidence 12245779999999999999999999999999999999999987766432
Q ss_pred --------CCCcccCcc---hHHHHHHHHHHHHHhcCCC-CHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 380 --------IDDFRKIPN---GIEERMHLVWDTMVESGQI-SVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 380 --------~~~~~~~~~---g~~~~l~~~~~~~~~~~~l-s~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
.+.|..+|+ |+++.+++++...+..+++ |++++++..+.|||++||+.+++|+
T Consensus 320 ~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 320 AFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp GEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred cccccccccCccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 125888887 9999999999877777776 8999999999999999999888886
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=8.4e-34 Score=277.69 Aligned_cols=316 Identities=26% Similarity=0.327 Sum_probs=267.5
Q ss_pred cccccccccccccCCCCchh-hhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHH-HHHHhcccccccceeeeeecCCh
Q 009410 106 GGIDPHTHLAMEFMGSETID-DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEA-YEKKAKNSCMDYGFHMAITKWDE 182 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~-~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 182 (535)
|+||+|+|+..+ |....+ +++++.++++.+||||++||.+..+. ...+.++. .........++++++.......
T Consensus 1 G~ID~HvH~rep--g~~~ke~~~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~- 77 (325)
T d1gkra2 1 GVVDEHVHIIDM--DLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGN- 77 (325)
T ss_dssp CEEEEEEECCCG--GGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTC-
T ss_pred CcEeCCcCCCCC--CCCCcccHHHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhccCCcccccccccccccc-
Confidence 899999999877 555554 59999999999999999999765443 33444444 4444456788888887665443
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCC---CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (535)
.+.+..+. ..|+.+++.+..+.. ....++..+.++++.+.+.|..+.+|+++........+.+...|..+...|
T Consensus 78 --~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~ 154 (325)
T d1gkra2 78 --LPEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAY 154 (325)
T ss_dssp --HHHHHHHH-HTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHH
T ss_pred --HHHHHhhh-hcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccc
Confidence 33444444 678999988765432 234568889999999999999999999998887777778888899998899
Q ss_pred cccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
...+|..+|...+.+++.++...+.++|+.|.++...++.++.+++.|.+|++++++++++++.+++.. .+..+++
T Consensus 155 ~~~rp~~aE~~~v~r~~~la~~~~~~~hi~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~----~~~~~k~ 230 (325)
T d1gkra2 155 EASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER----IGPYMKV 230 (325)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH----HGGGGCC
T ss_pred cccCchHHHHHHHHHHHHHhhhcCcceeccccccHHHHHhhhhhhhcCCceEEeecccccccchhhhhc----cCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999887753 3467889
Q ss_pred cCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 009410 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLT 416 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~ 416 (535)
+||+|...++++++++++.|.+.+++|||.|++...+..+.+.|+.+|+ |+++.++.++..++.+++||++++++..
T Consensus 231 ~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v~~~ 310 (325)
T d1gkra2 231 APPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVM 310 (325)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999988765567888876 8899999999889999999999999999
Q ss_pred hHHHHHHcCCCCCCc
Q 009410 417 STECARIFNVYPRKG 431 (535)
Q Consensus 417 T~~~A~~lgl~~~~G 431 (535)
|.|||++||+.+++|
T Consensus 311 s~nPAki~gl~p~KG 325 (325)
T d1gkra2 311 CEKPAKLFGIYPQKG 325 (325)
T ss_dssp THHHHHHHTCTTTSS
T ss_pred hHHHHHHhCCCCCCC
Confidence 999999999987777
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=5.1e-30 Score=249.30 Aligned_cols=301 Identities=22% Similarity=0.238 Sum_probs=202.7
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhc-ccccccceeeeeecCC-h
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-E 182 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 182 (535)
|+||+|+|+..+ |....++++++.++++.+||||++||.+..+. .....++...+... ....++.++....... .
T Consensus 1 G~ID~HvHlr~P--G~~~~ed~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (310)
T d1xrta2 1 GFIDIHVHLRDP--GQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKG 78 (310)
T ss_dssp CEEEEEECCCTT--TCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCS
T ss_pred CcEeCcccCCCC--CccccccHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCcc
Confidence 899999999987 77888999999999999999999999765443 34455555444432 2455555555443321 1
Q ss_pred hhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009410 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (535)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (535)
+...++..+. ..|...+ .+.+....+...+.++++.+.+.+..+.+|+++...... ....+......|...
T Consensus 79 ~~~~~~~~~~-~~g~~~f----~~~~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~----~~~~~~~~~~~~~~~ 149 (310)
T d1xrta2 79 KEIADFYSLK-EAGCVAF----TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYG----VINEGEVSALLGLSS 149 (310)
T ss_dssp SSBCCHHHHH-HHTCCCB----CCTTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------
T ss_pred chhhhhhhcc-cCcEEEE----ECCCCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhh----hhhhhhcccccCccc
Confidence 2222333333 4455333 233445668999999999999999999999987654322 223345555667778
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCC
Q 009410 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (535)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (535)
+|...+..++.+.+.+++..+.++|+.|.++.+.++.++.+++.|.+|++++++++++++.+.+.. .+..++++||
T Consensus 150 rp~~~E~~ai~r~~~la~~~~~~~~i~HiSt~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~----~~~~~k~~Pp 225 (310)
T d1xrta2 150 RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLN----SGANARVNPP 225 (310)
T ss_dssp ----CHHHHHHHHHHHHHHHCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC----------------------
T ss_pred cchHHHHHHHHHHHHHHhhcCCeeeccccchHHHHHHHHHHHHcCCceecchHHHHhhcccccccc----ccchhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999998877643 3467899999
Q ss_pred CCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 343 ~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
+|...+++++|++++.|.+..++|||+|+....+. .|...++ |+++.++.++ .++.+++++++++++..+.|
T Consensus 226 lR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~----~~~~~~~G~~g~e~~lp~l~-~~v~~g~l~l~~~v~~~s~n 300 (310)
T d1xrta2 226 LRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTIN 300 (310)
T ss_dssp ----CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHH-HHHHTTSSCHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHcc----CcccCCCCceeHHHHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999887763 2444443 9999999999 67888889999999999999
Q ss_pred HHHHcCC
Q 009410 420 CARIFNV 426 (535)
Q Consensus 420 ~A~~lgl 426 (535)
||++||+
T Consensus 301 pAki~gL 307 (310)
T d1xrta2 301 PARIIGV 307 (310)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 9999999
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.1e-22 Score=194.84 Aligned_cols=324 Identities=14% Similarity=0.091 Sum_probs=224.7
Q ss_pred eecccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHH---hcccccccceeeeeec
Q 009410 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK---AKNSCMDYGFHMAITK 179 (535)
Q Consensus 104 lPGlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 179 (535)
+|-=.|+|+|+.. ........++++.|+|+|+||.+..+. ...+.++...+. .......+.++.....
T Consensus 6 ~~~~~D~HvH~Re--------g~~~~~t~aa~agG~t~v~~MPNT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~~ 77 (343)
T d2eg6a1 6 IRRPDDWHLHLRD--------GDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYL 77 (343)
T ss_dssp EECCCEEEECCCS--------HHHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEEC
T ss_pred ECCCCcceEecCC--------CchHhHHHHHHhccCCEEEECCCCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeeec
Confidence 5666899999864 234445667889999999999765443 333433332221 1122233333333333
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEEeecC----CCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009410 180 WDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (535)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (535)
........+.+.........++.+.... +........+....+.++..+..+..|.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------------- 142 (343)
T d2eg6a1 78 TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHA--------------- 142 (343)
T ss_dssp CTTCCHHHHHHHHHTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCT---------------
T ss_pred cCCCChhhhhhhhhccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCccccc---------------
Confidence 3322233344433222334444443221 223345667788899999999999999864321
Q ss_pred cccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccc
Q 009410 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (535)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (535)
+....+...+.....+.+.++...+.++|+.|.++.+. ++.+++.|.+|+++.+|||++++.+++...++. .
T Consensus 143 ---~~~~~~~eae~~~~~~~~~l~~~~~~~~Hi~HiSt~~~---v~~ir~~~~~vt~EvtPHhL~L~~~d~~~~~~~--~ 214 (343)
T d2eg6a1 143 ---DIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDA---ADYVRDGNERLAATITPQHLMFNRNHMLVGGVR--P 214 (343)
T ss_dssp ---TSCGGGHHHHHHHHTHHHHHHHCTTCCEEECSCCSHHH---HHHHHTSCTTEEEEECHHHHHCCHHHHHTTSBC--G
T ss_pred ---cccccchhhhhHHHHHHHHHhhccCceEEEEecchhHH---HHHHHhcCCCcceeecCcHHHhhhhhhhcCCCc--c
Confidence 12234556677778888899999999999999999765 556677788899999999999999888654432 4
Q ss_pred eeEEcCCCCCcccHHHHHHHHhcC-CeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHH
Q 009410 336 KYVMSPPIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTD 411 (535)
Q Consensus 336 ~~~~~p~~r~~~~~~~~~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~e 411 (535)
.++++||+|...++..++..+.+| +.+.++|||+|.....+.. ...+. |++..+++++..+. . .+++++
T Consensus 215 ~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~~-----~~~~~g~~g~e~~l~l~l~~~~-~-~~~L~~ 287 (343)
T d2eg6a1 215 HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES-----SCGCAGCFNAPTALGSYATVFE-E-MNALQH 287 (343)
T ss_dssp GGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS-----TTBCCCCCCTTTHHHHHHHHHH-H-TTCGGG
T ss_pred ceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCcccccccc-----cccccccCChHHHHHHHHHHHH-h-cCCHHH
Confidence 668999999999999888766665 5589999999998877643 22332 78888888875443 3 369999
Q ss_pred HHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCC-CeeEeeEE
Q 009410 412 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE-GRRVKGKV 475 (535)
Q Consensus 412 al~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~-~~~~~~~v 475 (535)
+++..|.|||++||+..+.|+| ++. +..|.++.+.+.+...|+||. |..+.++|
T Consensus 288 lv~~~S~nPaki~gL~~~kg~I--------~~~--~~~~~v~~~~~~sk~~~tPf~~g~~l~w~v 342 (343)
T d2eg6a1 288 FEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAESIALTDDTLVPFLAGETVRWSV 342 (343)
T ss_dssp HHHHHHTHHHHHHTCCCCCSEE--------EEE--CCCEECCSCEECSSSEECCTTTTCEESCEE
T ss_pred HHHHHhHhHHHHhCCCCCCCeE--------EEe--cCceecCccccCCCCCeEecCCCCccceee
Confidence 9999999999999997776653 344 567999999999999999999 77666666
|
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.2e-20 Score=183.08 Aligned_cols=248 Identities=15% Similarity=0.068 Sum_probs=154.7
Q ss_pred HHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeee---eec---CChhhHHHHHHHHH---HcCCCEE
Q 009410 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA---ITK---WDEVVSDEMEVMVK---EKGINSF 200 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~---~~g~~~i 200 (535)
....++++|+|++.++............+...+.+.+.......... .+. ...+......++.+ ..+.+.+
T Consensus 52 ~~~~~l~~G~tt~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 131 (313)
T d2uz9a2 52 VVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRV 131 (313)
T ss_dssp HHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECSCCSSSTTSCCCHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred HHHHHHHhCCeEeeecccccccchhHHHHHHHHhCCcccccceeccCCcccchhhhhHHHHHHHHHHHHHHhhcccccce
Confidence 34456899999999875443222223333344444443322221111 111 11223333333331 3677888
Q ss_pred EEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHH
Q 009410 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAE 280 (535)
Q Consensus 201 k~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (535)
+...........+++.++++.+.|++.|+++..|+............+...+... + ..+....
T Consensus 132 ~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~~~~~~~----------------~-~~~~~~g 194 (313)
T d2uz9a2 132 KPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNY----------------T-SVYDKNN 194 (313)
T ss_dssp EEEEEECCGGGCCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHSTTSSSH----------------H-HHHHHTT
T ss_pred eEEEeccccccccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhhcccCCh----------------H-HHHHHcC
Confidence 8888888888899999999999999999999999965433222222222111110 1 1112223
Q ss_pred hcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC
Q 009410 281 FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360 (535)
Q Consensus 281 ~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv 360 (535)
..+.++.+.|+...++ ++++.+++.|+.++.||... +..+.. .+| +++++++|+
T Consensus 195 ~l~~~~~~~H~~~l~~-~e~~~l~~~g~~~~~~P~~~-------------~~~~~~---~~~---------v~~l~~~Gv 248 (313)
T d2uz9a2 195 LLTNKTVMAHGCYLSA-EELNVFHERGASIAHCPNSN-------------LSLSSG---FLN---------VLEVLKHEV 248 (313)
T ss_dssp CCSTTEEEEECTTCCH-HHHHHHHHHTCEEEECHHHH-------------HHTTCC---CCC---------HHHHHHTTC
T ss_pred CcCCcceEEeeeecch-hHHHHHhhhcccccccchhh-------------hhcccc---ccc---------hhhhhccCc
Confidence 4467889999998877 88999999999999998752 112121 122 899999999
Q ss_pred eEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHh-----cCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVE-----SGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-----~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
++++|||..+..... .|. +++....+.+... ..+++++|+|+++|+|+|++||+++++||
T Consensus 249 ~valGTD~~~~~~~~------~~~------~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT~ngA~aLg~~~~iGS 313 (313)
T d2uz9a2 249 KIGLGTDVAGGYSYS------MLD------AIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGN 313 (313)
T ss_dssp EEEECCCTTTSCCCC------HHH------HHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred eEEEeCCCCCCCCCC------HHH------HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 999999964432211 111 3333333333332 34599999999999999999999999997
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=1.9e-19 Score=174.26 Aligned_cols=243 Identities=14% Similarity=0.081 Sum_probs=147.8
Q ss_pred HHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceee-----eeecCChhhHHHHHHHHHH--cCCCEEEEE
Q 009410 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITKWDEVVSDEMEVMVKE--KGINSFKFF 203 (535)
Q Consensus 131 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~g~~~ik~~ 203 (535)
..+++++||||+.|+...........++...+.+.+......... .......+..++..+.... ...+.+...
T Consensus 53 ~~e~l~~GtTtv~d~~~~~~~~~~~~~~a~~~~gir~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ 132 (310)
T d2i9ua2 53 IKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDTEEIILKYKDKSNIVKPI 132 (310)
T ss_dssp HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTTTCSSEEEC
T ss_pred HHHHHHcCCcceeeeeccchhhhHHHHHHHHHhCccccccceeccCCccccchhhHHHHHHHHHHHHHHhhcccccccee
Confidence 345789999999987544322234444555555544332221111 1111111223333333322 234567777
Q ss_pred eecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhc
Q 009410 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (535)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (535)
+.++.....+++.++++.+.++++++++++|+.. ..+..... ...+... . ......+ ....
T Consensus 133 ~~~~~~~~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~---~~~~~~~---------~-----~~~~~~~-~g~~ 194 (310)
T d2i9ua2 133 ITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVK---SLHKKSN---------F-----YGEVYDK-FGLF 194 (310)
T ss_dssp BEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHH---HHCTTCS---------S-----HHHHHHH-TTCS
T ss_pred ecccCCCccCHHHHHHHHHHhhccccceeehhccchHHHHHHH---HHhcccc---------c-----HHHHHHh-cCCc
Confidence 7788888899999999999999999999999854 33322221 1122211 0 0111111 1222
Q ss_pred C-CCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCe
Q 009410 283 N-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL 361 (535)
Q Consensus 283 ~-~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~ 361 (535)
+ .++.+.|+...++ ++++.+++.|+.|+.||.. ++..+... +| +++++++|++
T Consensus 195 ~~~~~~~~H~~~~~~-~~i~~la~~g~~vv~cP~s-------------n~~l~~g~---~p---------v~~l~~~Gv~ 248 (310)
T d2i9ua2 195 GNTPTLMAHCIHSSK-EEINLIKRNNVTIVHCPTS-------------NFNLGSGM---MP---------VRKYLNLGIN 248 (310)
T ss_dssp SSSCEEEEECCSCCH-HHHHHHHHTTCEEEECHHH-------------HHHTTCCC---CC---------HHHHHHTTCE
T ss_pred cCCceeeeeeeeech-hHHHHHHhcCCEEEEeecc-------------cccccCCc---cc---------ccchhccCce
Confidence 2 3577889988887 8899999999999999875 22232222 23 8999999999
Q ss_pred EEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHH------hcCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 362 QLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMV------ESGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 362 ~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~------~~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
+++|||+.+.+... .|. ++++....+++. ....++++|+|+++|+|+|+++| ++||
T Consensus 249 v~lGTD~~~~~~~d------m~~------~m~~a~~~~~~~~~~~~~~~~~l~~~e~l~~aT~~gA~alG---riGS 310 (310)
T d2i9ua2 249 VVLGSDISAGHTCS------LFK------VIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFG---KVGS 310 (310)
T ss_dssp EEECCCBTTBCCSC------HHH------HHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTS---SCSS
T ss_pred EEEecCCCCCCCCC------HHH------HHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhc---CCCC
Confidence 99999976543221 222 344444443332 13458999999999999999998 4675
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4.6e-20 Score=175.98 Aligned_cols=252 Identities=15% Similarity=0.143 Sum_probs=159.6
Q ss_pred cccccccccccccC---------------------CCCchhhhH----HHHHHHHhCCcEEEeccccCCCCChHHHHHHH
Q 009410 106 GGIDPHTHLAMEFM---------------------GSETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAY 160 (535)
Q Consensus 106 GlID~H~H~~~~~~---------------------g~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~ 160 (535)
||||+|+|+++... ...++++.+ .+...++++||||+.|+... .....+..
T Consensus 1 GLVnaH~Hl~~~~~rg~~~~~~l~~wl~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~a~ 76 (281)
T d1p1ma2 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH----EEWIAKAV 76 (281)
T ss_dssp CEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS----HHHHHHHH
T ss_pred CcEehhhCHhHHHHHhccCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhCCeEEEeeeccC----cHHHHHHH
Confidence 89999999987621 111233332 23345689999999998542 34445555
Q ss_pred HHHhcccccccceeeeeecCChhhHHHHHHHH-HHcCC-CEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 161 EKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV-KEKGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
.+.+.+..+......... ...+..++..++. +..+. ..+...+.++....++++.++++.+.|++.|+++++|+...
T Consensus 77 ~~~g~r~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~iH~~e~ 155 (281)
T d1p1ma2 77 RDFGMRALLTRGLVDSNG-DDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYET 155 (281)
T ss_dssp HHHCCEEEEEEEECCBTT-BCTTHHHHHHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred HHhCCceEEeeeeeecCc-cccccHHHHHHHHHHhcCccCceEEEEecccchhhhhhhhHHHHHHHhccCccccccccCC
Confidence 555544333322221111 1122223332322 22232 24556667777888999999999999999999999998443
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccce
Q 009410 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (535)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~ 318 (535)
.........+.+ ....+.++.+.|+...+. ++++.+++.|+.++.||..+
T Consensus 156 ~~e~~~~~~l~~----------------------------~g~l~~~~~~~H~~~~~~-~di~~la~~~~~vv~cP~sn- 205 (281)
T d1p1ma2 156 SKEEYDLEDILN----------------------------IGLKEVKTIAAHCVHLPE-RYFGVLKDIPFFVSHNPASN- 205 (281)
T ss_dssp TTCCCCTHHHHT----------------------------TTTTTSCEEEEECTTCCG-GGTTTTTTSSEEEEECHHHH-
T ss_pred cccchhHHHHHH----------------------------cCCCCccccccceeeecH-HHHHHHHhcCCccccccchh-
Confidence 210001111111 123466788999999887 88999999999999999762
Q ss_pred EeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHH
Q 009410 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVW 398 (535)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 398 (535)
+..+... || +.+++++|+++++|||+.+.+...++ |. ++++...+
T Consensus 206 ------------~~lg~~~---~~---------~~~~~~~Gv~v~LGTD~~~s~~~~d~-----~~------em~~a~~~ 250 (281)
T d1p1ma2 206 ------------LKLGNGI---AP---------VQRMIEHGMKVTLGTDGAASNNSLNL-----FF------EMRLASLL 250 (281)
T ss_dssp ------------HHTTCCC---CC---------HHHHHHTTCEEEECCCCTTTTSCCCH-----HH------HHHHHHHH
T ss_pred ------------hhhcccc---hh---------HHHHHhCCCeEEEECCCCCCCCCcCH-----HH------HHHHHHHH
Confidence 2222221 22 88999999999999997665433222 22 44554444
Q ss_pred HHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 399 DTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 399 ~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
.+......++++++|+++|.|+|++||++
T Consensus 251 ~~~~~~~~~~~~~~l~~aT~~gA~aLGl~ 279 (281)
T d1p1ma2 251 QKAQNPRNLDVNTCLKMVTYDGAQAMGFK 279 (281)
T ss_dssp HHTTCTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 44433455999999999999999999994
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=9.1e-18 Score=161.98 Aligned_cols=257 Identities=13% Similarity=0.049 Sum_probs=136.9
Q ss_pred HHHHHHhCCcEEEeccccCCCCChHHHHHH---HHHHhcc-cccccceeee-eecCChhhHHHHHHHHHHcCCCEEEEEe
Q 009410 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEA---YEKKAKN-SCMDYGFHMA-ITKWDEVVSDEMEVMVKEKGINSFKFFM 204 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~ik~~~ 204 (535)
....++++||||+.|+....... ...+.. ....... ..+....... ......+......+.. ..+...++...
T Consensus 52 ~~~~~l~~GvTtv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 129 (320)
T d1ra0a2 52 TLKWQIANGIQHVRTHVDVSDAT-LTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEAL-RLGADVVGAIP 129 (320)
T ss_dssp HHHHHHHTTEEEEEEEEECCSTT-CHHHHHHHHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHH-HTTCSEECCCG
T ss_pred HHHHHHhCCeEEEEeccccccch-HHHHHHHHHHHHhhcccccccccccccccccCcHHHHHHHHHHH-HhcccccccCC
Confidence 34567899999999986544331 222222 1111111 1111111110 1111223344444544 55666655433
Q ss_pred ecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcC
Q 009410 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (535)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (535)
..........+.++.+++.|++.|+++..|+..... ....... ...... .....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~A~~~g~~~~~h~~~~~~~~~~~~~~------------------------~~~~~~-~~~~~ 184 (320)
T d1ra0a2 130 HFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVET------------------------VAALAH-HEGMG 184 (320)
T ss_dssp GGSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHHHH------------------------HHHHHH-HHTCG
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCCeeeeecccchhHHHhhhh------------------------HHHHHH-Hhhcc
Confidence 333333446888999999999999999999843321 1000000 000000 11112
Q ss_pred CCEEEEEcc------CHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHh
Q 009410 284 TPLYVVHVM------SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALA 357 (535)
Q Consensus 284 ~~~~~~H~~------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~ 357 (535)
.+....|+. .....+.+..+++.|+.++.+|.....+.......... ..+ ...+.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~----~~~------------~~~~~~~~ 248 (320)
T d1ra0a2 185 ARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKR----RGI------------TRVKEMLE 248 (320)
T ss_dssp GGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECHHHHHHHTTTTCCSSCC----CCC------------CCHHHHHH
T ss_pred cccccccceeccccchhhhHHHHHHhhhcCcEEEeccchhhhhcccccccccc----ccc------------CchhhHhh
Confidence 233344442 11223667788889999998887533222111110000 000 22788999
Q ss_pred cCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCccccCCC
Q 009410 358 TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 437 (535)
Q Consensus 358 ~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk 437 (535)
+|+++.+|||+...... ++.. ......+...+.......++|+.|||+++|.|||++||+++ |+|+|||
T Consensus 249 ~G~~v~~gtd~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~s~~eal~~aT~ngA~aLgl~~--Gsi~~Gk 317 (320)
T d1ra0a2 249 SGINVCFGHDGVFDPWY-------PLGT--ANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQD--YGIAAGN 317 (320)
T ss_dssp TTCCEEECCBCSSBTTB-------SCCC--CCHHHHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSS--CSSCTTS
T ss_pred cCceEeecCCcCCCCCC-------CCCC--hhHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCC
Confidence 99999999996543221 1110 01112222222222224558999999999999999999965 9999999
Q ss_pred Ccc
Q 009410 438 DAD 440 (535)
Q Consensus 438 ~AD 440 (535)
+||
T Consensus 318 ~AD 320 (320)
T d1ra0a2 318 SAN 320 (320)
T ss_dssp BCC
T ss_pred CcC
Confidence 998
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.72 E-value=5.5e-17 Score=158.42 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=148.8
Q ss_pred ecccccccccccccC-C----------------------CCchhhhH----HHHHHHHhCCcEEEeccccCCCC-----C
Q 009410 105 PGGIDPHTHLAMEFM-G----------------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING-----S 152 (535)
Q Consensus 105 PGlID~H~H~~~~~~-g----------------------~~~~~~~~----~~~~~~l~~GvTtv~d~~~~~~~-----~ 152 (535)
|||||+|+|+++... | ..++++++ ....+++++||||++|+...... .
T Consensus 1 PGlInaH~Hl~~s~~rg~~~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~ 80 (336)
T d2paja2 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDS 80 (336)
T ss_dssp ECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCH
T ss_pred CCCEehhhChhhhccccccccCCCCHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEecccccccccchhH
Confidence 999999999865421 1 11233333 23445689999999998654332 2
Q ss_pred hHHHHHHHHHHhcccccccceeeeeec-----------C-ChhhHHHHHHHHHH-----cCCCEEEEEeecCCCCcCCHH
Q 009410 153 LTAGFEAYEKKAKNSCMDYGFHMAITK-----------W-DEVVSDEMEVMVKE-----KGINSFKFFMAYKGSFMINDE 215 (535)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~-----~g~~~ik~~~~~~~~~~~~~~ 215 (535)
....++.....+.+.....+....... . ..........+... ..................+++
T Consensus 81 ~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (336)
T d2paja2 81 SAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPR 160 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHH
T ss_pred HHHHHHHHHHhCceeEeecceeccCcccccccchhhhhhhHHHHHHHHHHHHHHhhhhcccccceeeecccccCcccCHH
Confidence 233345555555443222211110000 0 01122223333222 112233343333444556899
Q ss_pred HHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHH
Q 009410 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD 295 (535)
Q Consensus 216 ~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~ 295 (535)
.++...+.+++.+.++..|+........... ...+.. ...........+..+...|+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~h~~~~~ 221 (336)
T d2paja2 161 EMRETAAVARRLGLRMHSHLSETVGYQDSAY--SMYGKS-----------------PVAFCGEHDWLGSDVWYAHLVKVD 221 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEECC---------------CCC-----------------HHHHHHHTTCCSTTEEEESCCSCC
T ss_pred HHHHHHhhhhccCCceeeeccccchhhHHHH--HhcCCc-----------------cccccccccccccccccccceecc
Confidence 9999999999999999999865432211111 111111 111222233446677889998887
Q ss_pred HHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhh
Q 009410 296 AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQ 375 (535)
Q Consensus 296 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~ 375 (535)
. +.++.+++.|..+..||... +..+.. . .+++.++++|+++++|||+.+.+...
T Consensus 222 ~-~~~~~l~~~~~~~~~~p~~~-------------~~~~~~---~---------~~~~~l~~~Gv~valGTD~~~s~~~~ 275 (336)
T d2paja2 222 A-DEIALLAQTGTGVAHCPQSN-------------GRLGSG---I---------CPVREMADAGVPVSIGVDGAASNEAA 275 (336)
T ss_dssp H-HHHHHHHHHTCEEEECHHHH-------------HCC-----------------CCTTHHHHTCCEEECCCHHHHCSCC
T ss_pred h-HHHHHHhhccccceeccchh-------------hccCcc---c---------cchhhHHhcCCeEEEEcCCCCCCCcc
Confidence 7 78888999999999888752 111111 1 22677889999999999964333222
Q ss_pred hhcCCCCcccCcchHHHHHHHHHHHH----------------HhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 376 KAFGIDDFRKIPNGIEERMHLVWDTM----------------VESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 376 ~~~~~~~~~~~~~g~~~~l~~~~~~~----------------~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
+ .|. ++++..++.++ ....++|+.|+|+++|+|+|++||++ ++|
T Consensus 276 d-----~~~------emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~aLgld-~iG 335 (336)
T d2paja2 276 D-----MIS------EVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLD-EVG 335 (336)
T ss_dssp S-----HHH------HHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCT-TSS
T ss_pred c-----HHH------HHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHHhCcc-ccC
Confidence 1 122 34444443322 23456999999999999999999994 555
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.68 E-value=5.3e-17 Score=156.28 Aligned_cols=273 Identities=15% Similarity=0.085 Sum_probs=149.2
Q ss_pred ecccccccccccccC----C---------------CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhc
Q 009410 105 PGGIDPHTHLAMEFM----G---------------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK 165 (535)
Q Consensus 105 PGlID~H~H~~~~~~----g---------------~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~ 165 (535)
|||||+|+|++.... + .........+...++++||||++|+.... ....+.....+.
T Consensus 1 PGlIdaH~Hl~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~G~Ttv~d~~~~~----~~~~~~~~~~~~ 76 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWAP----EVMDALLAREDL 76 (308)
T ss_dssp SCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECSH----HHHHHHHTCTTC
T ss_pred CCccchhhChhhhCccccCCCHHHHHHHHHhccccccHHHHHHHHHHHHHHcCCeEEEehhcCH----HHHHHHHHHhCc
Confidence 999999999975411 0 00111223445667899999999985432 222222222222
Q ss_pred ccccccceeeeeecCChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHH
Q 009410 166 NSCMDYGFHMAITKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF 242 (535)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 242 (535)
+...............++.........+ ....+.++.....+....++.+.++.....++..+.++..|........
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 156 (308)
T d2imra2 77 SGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTEL 156 (308)
T ss_dssp CEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHH
T ss_pred CeEEEeeecCCCCCCHHHHHHHHHHHHHHHhccCCCceEEeeecccccccchHHHHHHhhhccccCccceeeeecccchh
Confidence 2111111111111111222233333221 2344556766677777778999999999999999999999996654333
Q ss_pred HHHHHHHHcCCCCcc-------cc---cc-cCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEE
Q 009410 243 EGQKRMIELGITGPE-------GH---AL-SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (535)
Q Consensus 243 ~~~~~~~~~g~~~~~-------~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~ 311 (535)
..... ....... .+ .. ..........++.+.+ ....+.+..+.|+..... +.++.+++.|..+.
T Consensus 157 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~g~l~~~~~~~h~~~~~~-~~~~~~~~~g~~~~ 231 (308)
T d2imra2 157 EMFRT---GGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDE-LGVLAARPTLVHMVNVTP-DDIARVARAGCAVV 231 (308)
T ss_dssp HHHHH---SCSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHHHHH-HTCGGGCCEEEECCSCCH-HHHHHHHHHTCCEE
T ss_pred hhhhh---hccchhhhhhhhhhHHHhhhhhhcccccCCCHHHHHHH-CCCCCCCeeeeecccchh-hhhhhhhhcCCccc
Confidence 22221 1100000 00 00 0000000001112222 223355677889888776 78888999999988
Q ss_pred eccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHH
Q 009410 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIE 391 (535)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~ 391 (535)
.++... +..+..+ ..++++.++|+++++|||+.+.+.... .+. +
T Consensus 232 ~~p~~~-------------~~~~~~~------------~~~~~l~~aGv~valGTD~~~~~~~~~-----~~~------e 275 (308)
T d2imra2 232 TCPRSN-------------HHLECGT------------FDWPAFAAAGVEVALGTDSVASGETLN-----VRE------E 275 (308)
T ss_dssp ECHHHH-------------HHTTCCC------------CCHHHHHHTTCCEEECCCCHHHHSCSC-----THH------H
T ss_pred cccccc-------------ccccccc------------chHHHHHHCCCcEEEECCCCCCCCchh-----HHH------H
Confidence 887642 1111111 128899999999999999543211110 111 2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCC
Q 009410 392 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 427 (535)
Q Consensus 392 ~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~ 427 (535)
+++.... ..++++.|+|+++|.|+|++||+.
T Consensus 276 ~~~a~~~-----~~g~tp~e~l~~aT~~gA~~LGl~ 306 (308)
T d2imra2 276 VTFARQL-----YPGLDPRVLVRAAVKGGQRVVGGR 306 (308)
T ss_dssp HHHHHHH-----CTTSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHH-----cCCCCHHHHHHHHHHHHHHHhCCC
Confidence 2222222 457999999999999999999983
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.5e-16 Score=123.85 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=68.4
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC--CCCceEEecCCCEEeecccccccccccccCCCCchhhhHH
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~--~~~~~vID~~G~~vlPGlID~H~H~~~~~~g~~~~~~~~~ 129 (535)
+..++|+|++|++++.....+|+|+||||++|+++.+. +++.++||++|++|+|||||+|.|.........+.+
T Consensus 7 ~~~llikna~i~~~~~~~~~dI~I~~g~I~~I~~~~~~~~~~~~~vID~~G~~v~PG~ID~H~h~~~~~~p~~~~~---- 82 (105)
T d1onwa1 7 AGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEILPGNDADLLVMTPELRIE---- 82 (105)
T ss_dssp GCCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEESCCTTSBCCEEEECTTCCEE----
T ss_pred CCCEEEECcEEEcCCCCeeeeEEEECCEEEEeccCcccccCCCCeEEcCCCCEEeCCEeecccCcceecCCCcchH----
Confidence 45699999999999877789999999999999987553 356899999999999999999987544321222222
Q ss_pred HHHHHHhCCcEEEecc
Q 009410 130 GQAAALAGGTTMHIDF 145 (535)
Q Consensus 130 ~~~~~l~~GvTtv~d~ 145 (535)
..+..|.|++.+.
T Consensus 83 ---~~~~~G~~~v~~~ 95 (105)
T d1onwa1 83 ---QVYARGKLMVKDG 95 (105)
T ss_dssp ---EEEETTEEEEETT
T ss_pred ---HHhhcceEEeccC
Confidence 2368899998865
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.9e-16 Score=119.37 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=57.5
Q ss_pred EEEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc
Q 009410 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (535)
Q Consensus 55 ~vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 117 (535)
++|+|++|+|++.. ++++|+|+||+|.+|++..+.|.++++||++|++|+|||||+|+|....
T Consensus 2 ~al~n~rI~dg~~~~~~~~i~i~~g~I~~Ig~~~~~p~~~~viDl~G~~l~PGlid~hvH~~~~ 65 (85)
T d1yrra1 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVANLTA 65 (85)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEESCCTTSBCCEEE
T ss_pred eEEEeeEEECCCCcEeccEEEEeccEEEEEcccccccceeEEEecCCcEEEcccEecceeeccc
Confidence 68999999998875 5889999999999999987778889999999999999999999998665
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.63 E-value=1.8e-16 Score=132.15 Aligned_cols=109 Identities=33% Similarity=0.630 Sum_probs=103.2
Q ss_pred HHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCC
Q 009410 418 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGS 497 (535)
Q Consensus 418 ~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~ 497 (535)
.++|+.+...++++.|.+|.+|||+++|++..+.++++++.+...|+||+|..+.++|.+||++|++||++|+++...+.
T Consensus 39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~~~~sk~~~spfeG~~~~G~v~~TivrG~iV~~~g~~~~~~g~ 118 (150)
T d2ftwa1 39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGS 118 (150)
T ss_dssp CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTC
T ss_pred CCccEEEecccceeeeecCccCceEEEecCceEEEeccccccccccccCcCCEEEEEEeEEEECCEEEEECCEEeecCCC
Confidence 36788999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCcccccCchhhhHHHhhhccc
Q 009410 498 GKYIEMRPFNYLFHGLDKADAKYLSSLQA 526 (535)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (535)
|++++++++.+++.++.+.++....++++
T Consensus 119 Grfl~R~~~~~~~~~~~~~~~~~~~~~~~ 147 (150)
T d2ftwa1 119 GRFVPRPPFGPVFDGIEQRDKVRNELLRK 147 (150)
T ss_dssp CCBCCCCSSCGGGTTHHHHHHHHCGGGGC
T ss_pred ceEccCCCCchHHHHHHHHHHHhCccccc
Confidence 99999999999999999999988877654
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.63 E-value=5.9e-15 Score=140.25 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=96.5
Q ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEE
Q 009410 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (535)
Q Consensus 210 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (535)
.....+.++.+++.+...|+++..|+.......... ...+.+. ..+.
T Consensus 153 ~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~~--------------------------------~~~~~~~-~~~~ 199 (301)
T d2puza2 153 IAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGAE--------------------------------LAASYNA-LSAD 199 (301)
T ss_dssp TSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHHH--------------------------------HHHHTTC-SEEE
T ss_pred cccCHHHHHHHHHHHHHCCCceeeecccccchhHHH--------------------------------HHhhhcc-ceee
Confidence 345789999999999999999999985543211111 1111122 2345
Q ss_pred EccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCC
Q 009410 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (535)
Q Consensus 290 H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~ 369 (535)
|+..... +....+++.+..+..++.+..... ... .++ ++.++++|+++++|||+.
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~---------~~~~~~~Gv~v~lGTD~~ 254 (301)
T d2puza2 200 HLEYLDE-TGAKALAKAGTVAVLLPGAFYALR------------EKQ---LPP---------VQALRDAGAEIALATDCN 254 (301)
T ss_dssp ECTTCCH-HHHHHHHHHTCEEEECHHHHHHHT------------CCC---CCC---------HHHHHHHTCCEEECCCCC
T ss_pred eeecchH-HHHHHHHhcCCeeeeccchhhhhc------------ccc---cch---------HHHHHHCCCeEEEEeCCC
Confidence 5544444 556677788888887765421100 011 122 788999999999999964
Q ss_pred CCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 370 AFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
+.... +. .+...++.++...|||+.|||+++|+|||++||+++++||
T Consensus 255 ~~~~~--------~~--------~l~~~~~~~~~~~gl~~~eal~~aT~~~A~~LGl~~~~GS 301 (301)
T d2puza2 255 PGTSP--------LT--------SLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAETGT 301 (301)
T ss_dssp SSSCC--------BC--------CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred CCCCc--------cc--------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCcCc
Confidence 42211 11 1222222334456799999999999999999999999997
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=1.4e-14 Score=137.83 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=100.1
Q ss_pred CCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEE
Q 009410 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (535)
Q Consensus 209 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (535)
....+.+.+.++...+++.++.+..|+.......... ...+.+. ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~--------------------------------~~~~~~~-~~~ 197 (300)
T d2bb0a2 151 TGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGAE--------------------------------LAGKLKA-VSA 197 (300)
T ss_dssp TTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHHH--------------------------------HHHHTTC-SEE
T ss_pred cccCCHHHHHHHHHHHHhhhhcccccccchhhhHHHH--------------------------------HHHHhCC-ceE
Confidence 3456889999999999999999999985432211110 1112222 246
Q ss_pred EEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCC
Q 009410 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (535)
Q Consensus 289 ~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~ 368 (535)
.|+..... +.++.+++.+..+..|+..... ..... . ..+++++++|+++++|||+
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~-------------l~~~~--~---------~~~~~l~~~Gv~v~lgTD~ 252 (300)
T d2bb0a2 198 DHLVGTSD-EGIKKLAEAGTIAVLLPGTTFY-------------LGKST--Y---------ARARAMIDEGVCVSLATDF 252 (300)
T ss_dssp EECTTCCH-HHHHHHHHHTCEEEECHHHHHH-------------TTCCC--C---------CCHHHHHHTTCCEEECCCB
T ss_pred EEeeeccH-HHHHHHHhcCcceeecchhhhh-------------hhccc--c---------ccHHHHHHCCCEEEEEeCC
Confidence 67777665 7788888899999888764211 10000 0 1278999999999999996
Q ss_pred CCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 369 CAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
.+..... . .+...++.++...|||+.|||+++|+|||++||+++++|+
T Consensus 253 ~~~~~~~--------~--------~l~~~~~~a~~~~gl~~~eal~~aT~~~A~~lG~~~~~G~ 300 (300)
T d2bb0a2 253 NPGSSPT--------E--------NIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQ 300 (300)
T ss_dssp BTTTBCC--------C--------CHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSC
T ss_pred CCCCCch--------h--------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcchhhCc
Confidence 4322111 0 1112223344466899999999999999999999999985
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.61 E-value=1.1e-14 Score=137.58 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEE
Q 009410 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (535)
Q Consensus 211 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 290 (535)
.............++..+..+..|+....... .. ......+. ..+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-~~-------------------------------~~~~~~~~-~~~~~ 200 (301)
T d2q09a2 154 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLG-GS-------------------------------TLAANFGA-LSVDH 200 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCS-HH-------------------------------HHHHHTTC-SEEEE
T ss_pred ccchhhHHHHHHHHHHhcccceecccccchhH-HH-------------------------------HHHHhcCC-ceEee
Confidence 34567777778888888999999985432110 00 11112222 24678
Q ss_pred ccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCC
Q 009410 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (535)
Q Consensus 291 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~ 370 (535)
+..... +.++.+++.+..+..|+..+.. .+.. ..++ +++++++|+++++|||..+
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~-------------l~~~--~~~~---------~~~l~~aGv~v~lGTD~~~ 255 (301)
T d2q09a2 201 LEYLDP-EGIQALAHRGVVATLLPTAFYF-------------LKET--KLPP---------VVALRKAGVPMAVSSDINP 255 (301)
T ss_dssp CTTCCH-HHHHHHHHHTCEEEECHHHHHH-------------TTCC--CCCC---------HHHHHHTTCCEEECCCCBT
T ss_pred eecCcH-HHHHHHHHcCCCcccCccHHhh-------------hccc--ccCc---------HHHHHHCCCeEEEEeCCCC
Confidence 877665 7788899999999998875211 1111 0112 8899999999999999654
Q ss_pred CChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 371 FNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
.... .. .+...++.++...|||++|||+++|.|||++||+++++|+
T Consensus 256 ~~~~--------~~--------~l~~~~~~~~~~~glt~~eal~~aT~~~A~~lG~~~~iG~ 301 (301)
T d2q09a2 256 GTAP--------IV--------SLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQ 301 (301)
T ss_dssp TTBC--------CC--------CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred CCCC--------cc--------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcccccCc
Confidence 3211 11 1222233344456899999999999999999999998885
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.60 E-value=1.7e-14 Score=139.13 Aligned_cols=274 Identities=14% Similarity=0.015 Sum_probs=141.3
Q ss_pred ecccccccccccccC-CCC--------------------chhhh----HHHHHHHHhCCcEEEeccccCCCCChHHHHHH
Q 009410 105 PGGIDPHTHLAMEFM-GSE--------------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159 (535)
Q Consensus 105 PGlID~H~H~~~~~~-g~~--------------------~~~~~----~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~ 159 (535)
|||||+|+|+.+... |.. ..+.. ......++.+||||+.|+............+.
T Consensus 1 PGlID~H~Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~~~~~~~~~~~~~ 80 (325)
T d2ooda2 1 PGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEE 80 (325)
T ss_dssp ECEEEEEEEGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCcchhhCccccccccCCCCcHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEeeccccCchhhHHHHHH
Confidence 999999999875411 111 11111 12334568899999999865543323333333
Q ss_pred HHHHhcccccccceeeee-----ecCChhhHHHHHHHHHH-cCCCEEEEEeecCCCCcCCHHHHHHHHHH-HHhcCCeEE
Q 009410 160 YEKKAKNSCMDYGFHMAI-----TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKR-CKSLGALAM 232 (535)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~-a~~~g~~v~ 232 (535)
......+........... .....+..+...+.... .....+............+.......... +...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T d2ooda2 81 ASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVN 160 (325)
T ss_dssp HHHHTCCEEECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHhhcccceeeeeccCCCCCcccccCHHHHHHHHHHHHHhhccccceeeeeecccccccCHHHHHHHHhhHhhccCCcee
Confidence 333333322221111100 01112233333333322 22333333333333445566665555554 445688899
Q ss_pred EEcCChh-hHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEE
Q 009410 233 VHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (535)
Q Consensus 233 ~H~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~ 311 (535)
.|+.... ......+ ..+... .....+......+......|+..... +.+..++..+..+.
T Consensus 161 ~~~~e~~~e~~~~~~---~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 221 (325)
T d2ooda2 161 THISENPAECSGVLV---EHPDCQ---------------DYLGVYEKFDLVGPKFSGGHGVYLSN-NEFRRMSKKGAAVV 221 (325)
T ss_dssp EECSCCHHHHHHHHH---HCTTCS---------------SHHHHHHTTTCCSTTEEEECCTTCCH-HHHHHHHHHTCEEE
T ss_pred eehhccHHHHHHHHH---hcccCc---------------chHHHHHhcCcccCceeeeeeeeech-hhhhhhhccccccc
Confidence 9985543 2222221 111110 01111122233355677888888776 77888888887777
Q ss_pred eccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHH
Q 009410 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIE 391 (535)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~ 391 (535)
.++..... .+..+ ++ .......+.|+.+++|||..+...... +. +
T Consensus 222 ~~~~~~~~-------------~~~~~---~~-------~~~~~~~~~gv~~~~gtD~~~~~~~~~------~~------~ 266 (325)
T d2ooda2 222 FCPCSNLF-------------LGSGL---FR-------LGRATDPEHRVKMSFGTDVGGGNRFSM------IS------V 266 (325)
T ss_dssp ECHHHHHH-------------TTCCC---CC-------HHHHTCTTSCCEEEECCCBTTBSCCCH------HH------H
T ss_pred cccchhhc-------------ccccc---Cc-------HHHHHHhhcCCceEeecCcccCCCccH------HH------H
Confidence 66553111 11111 01 111223467999999999654322210 01 1
Q ss_pred HHHHHHHH------------------HHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCcc
Q 009410 392 ERMHLVWD------------------TMVESGQISVTDYVRLTSTECARIFNVYPRKGA 432 (535)
Q Consensus 392 ~~l~~~~~------------------~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~Gs 432 (535)
++....+. ....+.+||+.|+|++||.|||++||+++++||
T Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~eal~~AT~ngA~aLG~~d~iGS 325 (325)
T d2ooda2 267 LDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325 (325)
T ss_dssp HHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred HHHHHHHHHhhcccccccccchhhhhhccccCCCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 11111110 122357899999999999999999999999997
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=2.4e-16 Score=130.20 Aligned_cols=101 Identities=32% Similarity=0.579 Sum_probs=95.5
Q ss_pred HHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCc
Q 009410 419 ECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 498 (535)
Q Consensus 419 ~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~ 498 (535)
++|+.+.....++.+.+|.+|||+++|++..|.++++++.+...|+||+|+.+.++|.+||++|++||++|+++..++.|
T Consensus 39 ~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G 118 (142)
T d1kcxa1 39 GGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMG 118 (142)
T ss_dssp SSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCC
T ss_pred ccceeechhhcceeecccccceEEEEeccceEEEcchhccccCCccCCcCCEEEEEEEEEEECCEEEEECCEEeEcCCCC
Confidence 56888898888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCc-ccccCchhhhHH
Q 009410 499 KYIEMRPFN-YLFHGLDKADAK 519 (535)
Q Consensus 499 ~~~~~~~~~-~~~~~~~~~~~~ 519 (535)
++++++++. +++++++++|..
T Consensus 119 ~fl~r~~~~~~~~~~~~~~~~~ 140 (142)
T d1kcxa1 119 RFIPRKPFPEHLYQRVRIRSKV 140 (142)
T ss_dssp CBCCCCSSCHHHHHHHHHHHHH
T ss_pred eEecCCCCChHHHHHHHHHHhh
Confidence 999999888 799999998864
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.59 E-value=9.9e-16 Score=122.07 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=56.6
Q ss_pred cccEEEEccEEEcCCCc----eeeeEEEe-CCEEEEeeCCC--CCCCCceEEecCCCEEeecccccccccccc
Q 009410 52 SSKILIKGGTVVNAHHQ----QIADVYVE-DGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~----~~~~I~I~-~G~I~~Vg~~~--~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 117 (535)
+..++|+|++|+|++.. ++++|+|+ ||||.+||+.. ..+.++++||++|++|||||||+|+|+...
T Consensus 3 ~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~~~~~~viD~~Gk~v~PGlid~H~Hl~~~ 75 (118)
T d2p9ba1 3 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLEVGKSADLLVLN 75 (118)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEECCTTSBCCEEEES
T ss_pred CccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccccceeEEEeccCcEEEeeecceeEEEEec
Confidence 45699999999998642 68999996 69999999853 345678999999999999999999999876
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.56 E-value=5e-15 Score=140.87 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 350 ~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
..++.++++|+++++|||........ + ++... ++.+++..|||+.|||+++|+|||++||++++
T Consensus 258 ~~~~~~~~~Gv~v~~GtD~~~~~~~~-------~-----~l~~e----l~~~~~~~Gls~~eaL~~aT~n~A~~lgl~d~ 321 (324)
T d2p9ba2 258 SGARQAHEAGLMIGVGTDTGMTFVPQ-------Y-----ATWRE----LELLVAYAGFSPAEALHAATAVNASILGVDAE 321 (324)
T ss_dssp HHHHHHHHTTCCBCCCCCTTSTTSCT-------T-----CHHHH----HHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTT
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcChh-------h-----HHHHH----HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCcC
Confidence 45778999999999999953321110 0 11222 22344456899999999999999999999999
Q ss_pred Ccc
Q 009410 430 KGA 432 (535)
Q Consensus 430 ~Gs 432 (535)
+||
T Consensus 322 ~GS 324 (324)
T d2p9ba2 322 TGS 324 (324)
T ss_dssp SSS
T ss_pred cCc
Confidence 997
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.55 E-value=7.8e-15 Score=142.31 Aligned_cols=285 Identities=14% Similarity=0.034 Sum_probs=162.4
Q ss_pred cccccccccccccCCCC------------chhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcccccccc
Q 009410 106 GGIDPHTHLAMEFMGSE------------TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~------------~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (535)
||+|+|+|+.....+.. ..+.....+.++.++|||+++|+...... ......+...+.+.+....++
T Consensus 16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~~g 95 (331)
T d1i0da_ 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG 95 (331)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEEEE
Confidence 99999999976522110 11233345667789999999998543323 233333333443444555555
Q ss_pred eeeeeecC-ChhhHHHHHHHHH---Hc-------CCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009410 173 FHMAITKW-DEVVSDEMEVMVK---EK-------GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (535)
Q Consensus 173 ~~~~~~~~-~~~~~~~~~~~~~---~~-------g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 241 (535)
++...... .....+++..+.. .. +....+...... ......+.+++.++.+++.|.++.+|+......
T Consensus 96 ~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~g~pv~~h~~~~~~~ 174 (331)
T d1i0da_ 96 LWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGK-ATPFQELVLKAAARASLATGVPVTTHTAASQRD 174 (331)
T ss_dssp CCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSS-CCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTH
T ss_pred EecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeecccccc-ccHHHHHHHHHHHHHHHHhCCeEEeeccchhhh
Confidence 55422211 1112223322221 11 122344432221 111225667888899999999999998543211
Q ss_pred HHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEee
Q 009410 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (535)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 321 (535)
...+.+.+........++++.|+......+.+..+++.|..+..+.+++++.+
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 227 (331)
T d1i0da_ 175 ---------------------------GEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIG 227 (331)
T ss_dssp ---------------------------HHHHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTT
T ss_pred ---------------------------hhhhhhhhhhcccCCcceEEEecCCcchHHHHHHHHhcCCceeecceeeeccc
Confidence 12233333334444567889999865556888889999999999999887766
Q ss_pred CcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCC--eEEEeCCCCCCChhhhhcCCCCcccC---cchHHHHHHH
Q 009410 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKI---PNGIEERMHL 396 (535)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~---~~g~~~~l~~ 396 (535)
..+..... +...++.|+.| ...+++++.+|. .+.++||+++........ ...... +.|++..+..
T Consensus 228 ~~~~~~~~----~~~~~~~~~~r----~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~~--~~~~~~~~g~~g~~~~l~~ 297 (331)
T d1i0da_ 228 LEDNASAS----ALLGIRSWQTR----ALLIKALIDQGYMKQILVSNDWLFGFSSYVTN--IMDVMDRVNPDGMAFIPLR 297 (331)
T ss_dssp CTTCHHHH----HHHCSSCHHHH----HHHHHHHHHTTCGGGEEECCCCCSEECSSSTT--HHHHHHHHCTTGGGHHHHT
T ss_pred hhhhcccc----CCccCCChhhh----HHHHHHHHHhcCCCCEEECCCCCCcccccccC--CCccccccCCCcHHHHHHH
Confidence 55443221 11222223322 245677888876 468999985432111000 000000 1156666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 397 VWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 397 ~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
++.. +...|+|++++.+..|.||||+||++.+
T Consensus 298 ~~~~-~~~~gis~e~i~~i~~~NParlf~l~~k 329 (331)
T d1i0da_ 298 VIPF-LREKGVPQETLAGITVTNPARFLSPTLR 329 (331)
T ss_dssp HHHH-HHHTTCCHHHHHHHHTHHHHHHHSCCCC
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 6643 3456699999999999999999999754
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.52 E-value=1.5e-14 Score=137.34 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCC
Q 009410 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 428 (535)
Q Consensus 349 ~~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~ 428 (535)
...++.++++|+++++|||+...+.... ...+.+ + ..|||+.|||+++|+|||++||+++
T Consensus 249 ~~~~~~l~~aGv~v~~GTD~~~~~~~~~--------------~~el~~-----~-~~gls~~eaL~~ATi~~A~aLg~~d 308 (311)
T d2r8ca2 249 LHSIEIMKRAGVKMGFGTDLLGEAQRLQ--------------SDEFRI-----L-AEVLSPAEVIASATIVSAEVLGMQD 308 (311)
T ss_dssp HHHHHHHHHTTCEECCCCCCCGGGGGGT--------------THHHHH-----H-TTTSCHHHHHHHTTHHHHHHTTCTT
T ss_pred hHHHHHHHHCCCeEEEEeCCCCCchHHH--------------HHHHHH-----H-HcCCCHHHHHHHHHHHHHHHHCCCc
Confidence 4678999999999999999643221110 112221 2 2379999999999999999999998
Q ss_pred CCc
Q 009410 429 RKG 431 (535)
Q Consensus 429 ~~G 431 (535)
++|
T Consensus 309 ~iG 311 (311)
T d2r8ca2 309 KLG 311 (311)
T ss_dssp TSS
T ss_pred CCC
Confidence 887
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.50 E-value=5.1e-14 Score=133.40 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 350 ~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
.++++++++|+++++|||+...+... +...+..+. +.|||+.|||+++|+|||++||++++
T Consensus 248 ~~~~~l~~~Gv~v~lGTD~~~~~~~~--------------~~~el~~~~-----~~Gls~~eaL~~aT~~~A~~LGl~d~ 308 (310)
T d2qs8a2 248 DTFRKAYEKGVKIAFGTDAGVQKHGT--------------NWKEFVYMV-----ENGMPAMKAIQSATMETAKLLRIEDK 308 (310)
T ss_dssp HHHHHHHHHTCCBCCCCCBTTBCTTC--------------TTHHHHHHH-----HTTCCHHHHHHHTTHHHHHHTTCTTT
T ss_pred HHHHHHHHCCCeEEEecCCCCCCccH--------------HHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHhCcCCC
Confidence 45888999999999999964332111 011222222 45799999999999999999999988
Q ss_pred Cc
Q 009410 430 KG 431 (535)
Q Consensus 430 ~G 431 (535)
+|
T Consensus 309 iG 310 (310)
T d2qs8a2 309 LG 310 (310)
T ss_dssp SS
T ss_pred cC
Confidence 87
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.50 E-value=1.5e-14 Score=136.65 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCC
Q 009410 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 429 (535)
Q Consensus 350 ~~~~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~ 429 (535)
..+++++++|+++++|||+...+.... ...+..+ + +.|||+.|||+++|+|||++||++ +
T Consensus 242 ~~~~~l~~aGv~v~lGTD~~~~~~~~~--------------~~el~~~----~-~~Gls~~eaL~~aT~n~A~~lGl~-D 301 (303)
T d3be7a2 242 ENFMNAHRRGAIITFGTDAGIFDHGDN--------------AKQFAYM----V-EWGMTPLEAIQASTIKTATLFGIE-N 301 (303)
T ss_dssp HHHHHHHHHTCCEECCCCBTTBCTTCG--------------GGHHHHH----H-HTTCCHHHHHHTTTHHHHHHHTCS-S
T ss_pred HHHHHHHHCCCeEEEEeCCCCcccHHH--------------HHHHHHH----H-HcCCCHHHHHHHHHHHHHHHhCCc-c
Confidence 557889999999999999643322111 1122222 2 457999999999999999999995 6
Q ss_pred Cc
Q 009410 430 KG 431 (535)
Q Consensus 430 ~G 431 (535)
+|
T Consensus 302 ~G 303 (303)
T d3be7a2 302 IG 303 (303)
T ss_dssp CS
T ss_pred cC
Confidence 66
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.50 E-value=1.9e-14 Score=112.99 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=53.2
Q ss_pred cEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccc
Q 009410 54 KILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H 113 (535)
+++|+|++|+|+.+. ++.+|+|+||+|++|++....+.++++||++|++|+|||||.|.|
T Consensus 2 ~~l~~n~~v~d~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~vID~~G~~v~PGlid~h~~ 64 (102)
T d2r8ca1 2 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVPGAHA 64 (102)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEESCCTTSBC
T ss_pred eEEEECeEEECCCCCCcccCcEEEEECCEEEEccccCCCCCCCEEEeCCCCEEECceeeheee
Confidence 589999999998753 578999999999999987666678999999999999999988874
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.49 E-value=4.9e-15 Score=123.64 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=69.5
Q ss_pred CcccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCC----------CCCCceEEecCCCEEeecccccccccccccCC
Q 009410 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (535)
Q Consensus 51 ~~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~----------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~g 120 (535)
...|++|+|+.|+|..+...++|.|+||||++||+... ...+.++||++|++|+||+||.|+|+..+
T Consensus 63 ~~lDlvI~n~~Ivd~~Gi~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p--- 139 (181)
T d1ejxc1 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLV--- 139 (181)
T ss_dssp GSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEE---
T ss_pred ccccEEEEccEEcCCCCcEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeee---
Confidence 36799999999999988889999999999999997422 23468999999999999999999999877
Q ss_pred CCchhhhHHHHHHHHhCCcEEEeccc
Q 009410 121 SETIDDFFSGQAAALAGGTTMHIDFV 146 (535)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (535)
...++.+......++..|++.+..|.
T Consensus 140 ~~~~eal~sG~tt~igGG~~~~gpm~ 165 (181)
T d1ejxc1 140 VWSPAFFGVKPATVIKGGMIAIAPMG 165 (181)
T ss_dssp EECGGGTTTSCSEEEETTEEEEEEEC
T ss_pred eeehhhhccchheEEeCCceEEEECC
Confidence 22333332222333444555555543
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.45 E-value=3.8e-14 Score=120.98 Aligned_cols=66 Identities=26% Similarity=0.419 Sum_probs=60.1
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEE---eecccccccccccc
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGIDPHTHLAME 117 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~v---lPGlID~H~H~~~~ 117 (535)
+.+++|+|++|+|++.....+|+|+||||++|+++...+.+.++||++|++| +|||||+|.|++..
T Consensus 2 m~dllikn~~v~~~~~~~~~di~i~~g~I~~ig~~~~~~~~~~viDa~G~~V~p~~pg~~d~Hih~~~~ 70 (156)
T d2fvka1 2 IYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSDADLVIWYP 70 (156)
T ss_dssp CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECCTTTSBCCEEEECC
T ss_pred CccEEEECCEEECCCCCEEEEEEEECCEEEEecCCCCCCCCCEEEECCCCEEeeecccccccceEEEee
Confidence 6789999999999988889999999999999999776666789999999997 69999999999876
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.44 E-value=8.1e-14 Score=113.06 Aligned_cols=63 Identities=25% Similarity=0.484 Sum_probs=56.1
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 117 (535)
+|++|+|++|++++....++|+|+||||++|++... ++.++||++|++|+||+||+|+|+...
T Consensus 1 mDllikn~~v~~~~~~~~~di~I~dg~I~~ig~~~~--~~~~~iDa~G~~v~Pg~i~~~~~~~i~ 63 (127)
T d1nfga1 1 MDIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPIAVGSDADIVLW 63 (127)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECSTTSBCCEEEE
T ss_pred CcEEEECCEEECCCCCEEEEEEEECCEEEEeeCCCC--CceEEEEeeceEEeeecccccccceee
Confidence 479999999999988888999999999999998653 468999999999999999999997543
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.43 E-value=3.7e-14 Score=129.76 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=86.3
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCC-C-------ChHHHHHHHHHHhcccccccceeeee
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAI 177 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (535)
|-||.|+|+-.+ . ....+|.+||||++-.+..+. + ...-.+..+.+.....++++++..-.
T Consensus 1 GgiDtHvHfi~P--q---------q~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkG 69 (390)
T d4ubpc2 1 GGIDTHVHFINP--D---------QVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKG 69 (390)
T ss_dssp CEEEEEEECCCT--T---------HHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CCccccccccCH--H---------HHHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhhhCCcceeeeecc
Confidence 679999998766 1 156789999999996543322 1 34566777888778888888886643
Q ss_pred ecCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChh
Q 009410 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (535)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 239 (535)
... ....+.+.+ ..|+.++|+.-++ ..++..+...+..|.++++++.+|..+.+
T Consensus 70 n~s---~~~~l~eqi-~aGa~GlKiHEDw----Gatpa~id~~L~vad~~dvqv~iHtDtlN 123 (390)
T d4ubpc2 70 HGS---SIAPIMEQI-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLN 123 (390)
T ss_dssp CCS---SHHHHHHHH-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred ccC---ChHHHHHHH-Hhhhheeeccccc----ccCHHHHHHHHHHhhccCceEEEecCCcc
Confidence 322 345566666 7899999997654 46899999999999999999999985544
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.5e-12 Score=120.79 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=40.0
Q ss_pred CCeEEEeCCCCCCChhhhhcCCCCcccCcc---hHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 359 GILQLVGTDHCAFNSTQKAFGIDDFRKIPN---GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 359 Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~---g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
+..+.++||+.+........ +...+. +.+..+.. +..++...|+|++++++++|.|||++||+ +++|
T Consensus 215 ~~~~~~~td~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~gls~~~al~~aT~npAr~lGL-~~kG 284 (284)
T d1onwa2 215 LARVTLSSDGNGSQPFFDDE----GNLTHIGVAGFETLLET-VQVLVKDYDFSISDALRPLTSSVAGFLNL-TGKG 284 (284)
T ss_dssp GGGEEEECCBTCC-----------------CCCCSHHHHHH-HHHHHHHHCCCHHHHHGGGTHHHHHHTTC-TTCS
T ss_pred CceEEEEecccccccccccc----ccccCCCCChHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHhCC-CCCC
Confidence 34678899976554333221 111111 33333333 33566677899999999999999999999 4566
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.40 E-value=2.2e-13 Score=110.89 Aligned_cols=62 Identities=34% Similarity=0.509 Sum_probs=53.8
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccccc
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~~ 117 (535)
++|+|++|++++....++|+|+||+|++|+++.+.+ ++++||++|++|+||+||.|+|+...
T Consensus 2 ~likn~~i~~~~~~~~~di~I~~g~I~~ig~~~~~~-~~~viDa~g~~v~Pg~i~~~~~~~i~ 63 (127)
T d1ynya1 2 KWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVN-GAEEIDATGCYVIPIAVGSDADIVIF 63 (127)
T ss_dssp EEEESCEEECSSCEEECEEEEETTEEEEEECC-----CCEEEECTTSEEEECSTTSBCCEEEE
T ss_pred EEEECcEEECCCCCEEEeEEEECCEEEEecCCCCCC-CCEEEEhhhceeecccccccchhhhh
Confidence 799999999998888999999999999999876644 57999999999999999999998643
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.37 E-value=5.8e-13 Score=122.71 Aligned_cols=128 Identities=13% Similarity=-0.017 Sum_probs=66.6
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhccccc--ccceeeee-----e
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCM--DYGFHMAI-----T 178 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~ 178 (535)
||||+|+|+..+ +....++. .+.++++||||++|+............+........... ........ .
T Consensus 1 GlID~H~H~~~~--~~~~~~~~---~~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (267)
T d2icsa2 1 GWIDDHVHCFEK--MALYYDYP---DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELA 75 (267)
T ss_dssp CEEEEEECCCTT--SSSSCCCH---HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTS
T ss_pred CeEEeCcCCCCC--CCcchhhH---HHHHhCCeeEEEECCCCCChhHHHHHHHHHHhhhcchhhcccccccccccccccC
Confidence 899999999766 44455544 467899999999999765544333333333222211110 00000000 0
Q ss_pred cCChhhHHHHHHHHHHcCCCEEEEEeecC---CC-CcCCHHHHHHHHHHHHhcCCeEEEEcCChh
Q 009410 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYK---GS-FMINDELLIEGFKRCKSLGALAMVHAENGD 239 (535)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~---~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 239 (535)
.......+...... ..+.+.++.+.... +. .....+........+...++.+..|.....
T Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 139 (267)
T d2icsa2 76 DLSKVQASLVKKAI-QELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAP 139 (267)
T ss_dssp SGGGCCHHHHHHHH-HHCTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSS
T ss_pred ChhhcCHHHHHHHH-hhhhhhhhhhhhhhcccccccCCcHHHHHHHHHHHHhcccceeeecccch
Confidence 01111234444444 44555554433321 11 122344455555667778899999985543
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.37 E-value=3.5e-13 Score=103.67 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=53.7
Q ss_pred cEEEEccEEEcCCCc---eeeeEEEeCCEEEEeeCCC-CCCCCceEEecCCCEEeeccccccccccc
Q 009410 54 KILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~---~~~~I~I~~G~I~~Vg~~~-~~~~~~~vID~~G~~vlPGlID~H~H~~~ 116 (535)
.++|+|++|+|+.+. .+.+|+|+||+|++|++.. ..++++++||++|++|+|||+|+|.|-..
T Consensus 2 ktlI~~g~liDg~~~~~~~~~~I~I~~~~I~~V~~~~~~~~~~~~vID~~G~~v~PGL~~g~~~d~~ 68 (96)
T d2qs8a1 2 KTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIESGKLADLI 68 (96)
T ss_dssp CEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESCCCCTTSSEEEEEEEEEEEESCCTTSBCCEE
T ss_pred eEEEECeEEEECCCCccccCceEEEECCEEEEEcccccCCCCCCEEEECCCCEeccCccccCcccEE
Confidence 379999999998642 6889999999999998753 33467899999999999999999999433
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.35 E-value=5.3e-13 Score=108.70 Aligned_cols=63 Identities=27% Similarity=0.477 Sum_probs=55.1
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccc
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~ 116 (535)
+.++|+|++|++++....++|+|+||+|++|++..+. .++++||++|++|+||+||.|+|+..
T Consensus 1 M~~likn~~v~~~~~~~~~Di~I~~g~I~~Ig~~~~~-~~~~vida~g~~v~P~~v~~~~~~~~ 63 (128)
T d1k1da1 1 MTKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEE-KGAEVIDAKGCYVFPIVVGSDADLVI 63 (128)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECSSBEEEEESSCCC-SSCCCEECTTCEEEECSTTSBCCEEE
T ss_pred CCEEEECcEEECCCCCEEeeEEEECCEEEEEcCCCCC-CceEEeeeCCCeEeeeecccccceEE
Confidence 3589999999999888889999999999999997764 45789999999999999987777643
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.35 E-value=6.1e-13 Score=107.88 Aligned_cols=65 Identities=28% Similarity=0.387 Sum_probs=59.2
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecc---cccccccccc
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG---IDPHTHLAME 117 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGl---ID~H~H~~~~ 117 (535)
.+++|+|++|++.+....++|+|+||||++|+++...+.+.++||++|++|+||+ .|+|.|+..+
T Consensus 2 ~dllIkn~~iv~~~~~~~~Di~I~dgkI~~i~~~~~~~~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp 69 (126)
T d1gkra1 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDL 69 (126)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEESCCTTSBCCEEEEES
T ss_pred ccEEEECcEEECCCCCEEEeEEEECCEEEEEcCcCCcccceEEeehhhcccccceeecccchhheecc
Confidence 5799999999998877889999999999999998766667899999999999999 9999998866
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.31 E-value=6e-11 Score=115.11 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=126.0
Q ss_pred ChhhHHHHHHHHH---HcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcc
Q 009410 181 DEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (535)
Q Consensus 181 ~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~ 257 (535)
+.+..++|.++++ +.|+-++.....|.-....+.+++.++.+.+.++|..+..|......
T Consensus 103 t~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~r~~~~----------------- 165 (358)
T d1m7ja3 103 TADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGE----------------- 165 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSST-----------------
T ss_pred CHHHHHHHHHHHHHHHhcCCcccccCCcccccccCCHHHHHHHHHHHHhcCCeeeeeeccccc-----------------
Confidence 4456666666654 47899988766654333458999999999999999999999854321
Q ss_pred cccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCH--------H-HHHHHHHHHHcCCcEEeccccceEeeC---ccc
Q 009410 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM--------D-AMEEIAKARKAGQRVIGEPVVSGLVLD---DSW 325 (535)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~--------~-~~~~~~~~~~~g~~v~~~~~~~~~~~~---~~~ 325 (535)
...+.+.+++++++..+.++++.|.... . ....++ .++.|..|+.+..|+..... .+.
T Consensus 166 ---------~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~-~a~~G~~i~~d~yPy~ag~t~l~~~~ 235 (358)
T d1m7ja3 166 ---------HIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIE-AAMASQDVSLDAYPYVAGSTMLKQDR 235 (358)
T ss_dssp ---------THHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHH-HHHHHSCEEEEECSCSCEEEECCCCT
T ss_pred ---------cHHHHHHHHHHHHHHcCCceEecccccCCCcchhhHHHHHHHHH-HHhcCCCcceeecCccccccccchhh
Confidence 1135577888999999999999997431 1 112223 34468899988877643221 111
Q ss_pred ccCcCccccceeEEcCCCC--------------------------------CcccHHHHHHHHhcCCeEEEeCCCCCCCh
Q 009410 326 LWHSDFVTAAKYVMSPPIR--------------------------------ASGHNKALQAALATGILQLVGTDHCAFNS 373 (535)
Q Consensus 326 ~~~~~~~~~~~~~~~p~~r--------------------------------~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~ 373 (535)
.. +.........++.. ...+.+.+.++++.-. .++|||+.+...
T Consensus 236 ~~---~~~~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~-~~igSDgga~~~ 311 (358)
T d1m7ja3 236 VL---LAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGP-TMIGSDGLPHDE 311 (358)
T ss_dssp TT---TSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTT-EEECCCCCTTCS
T ss_pred hh---hccchhhhccccChhhccCcHHHHHHHcCCCHHHHHHHHhhccchhhcCCHHHHHHHHhCCC-ceEEcCcccCCC
Confidence 10 00000111111100 0111345777777644 678999765422
Q ss_pred hhhhcCCCCcccCcchHHHHHHHHHHHHHhcC-CCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 374 TQKAFGIDDFRKIPNGIEERMHLVWDTMVESG-QISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~-~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
.. +|.+. ..++.++..++++. -||+++|++..|..||+.||+. ++|
T Consensus 312 ~~----------hpr~~-gtf~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~-dRG 358 (358)
T d1m7ja3 312 RP----------HPRLW-GTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLA-ERG 358 (358)
T ss_dssp SC----------CTHHH-HHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCT-TCS
T ss_pred Cc----------CCCCc-ccHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHhCCC-CCC
Confidence 11 12111 12334454555544 4899999999999999999994 455
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.31 E-value=9.2e-13 Score=105.97 Aligned_cols=62 Identities=31% Similarity=0.506 Sum_probs=55.1
Q ss_pred EEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccccccccccc
Q 009410 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (535)
Q Consensus 55 ~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~~ 116 (535)
++|+|++|++++....++|+|+||+|++|+++...+.++++||++|++|+||..+.|.|...
T Consensus 2 llIkng~iv~~~~~~~~Di~I~~gkI~~Ig~~l~~~~~~~viDa~G~~v~~g~d~~~~d~~~ 63 (123)
T d1gkpa1 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYDPQY 63 (123)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECCCEEEEETTC
T ss_pred EEEECcEEECCCCCEEeeEEEECCEEEEeecCCCCCcchhhhhhccceEecCcceEEEeccc
Confidence 79999999998888899999999999999998877778899999999999999666666543
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.30 E-value=3.2e-12 Score=116.86 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=84.3
Q ss_pred cccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCC-C-------ChHHHHHHHHHHhcccccccceeeeeec
Q 009410 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (535)
Q Consensus 108 ID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (535)
||.|+|+-.+ . ....+|.+||||++-.+..+. + .....+..+.+.....++++++..-...
T Consensus 2 iDtHvHfi~P--q---------q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~ 70 (389)
T d1e9yb2 2 IDTHIHFISP--Q---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNA 70 (389)
T ss_dssp EEEEEETTCT--T---------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred ccccccccCH--H---------HHHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhhcCCcceeeeeccCC
Confidence 8999998766 1 156789999999996543321 1 3456677777777788888887654332
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChh
Q 009410 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (535)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 239 (535)
. ....+.+.+ +.|+.++|+.-+ +..++..+...+..|.++++++.+|....+
T Consensus 71 s---~~~~l~eqi-~aGa~GlKiHED----wGatp~~Id~~L~vad~~dvqv~iHtDtlN 122 (389)
T d1e9yb2 71 S---NDASLADQI-EAGAIGFKIHED----WGTTPSAINHALDVADKYDVQVAIHTDTLN 122 (389)
T ss_dssp S---CHHHHHHHH-HTTCSEEEECGG----GCCCHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred C---ChHHHHHHH-Hhccceeecccc----ccCCHHHHHHHHHHHHhhCceEEecCCCcc
Confidence 2 245566666 789999999654 456899999999999999999999986554
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.28 E-value=4.1e-12 Score=102.91 Aligned_cols=73 Identities=29% Similarity=0.445 Sum_probs=69.9
Q ss_pred ccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 431 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 431 GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
-.|++|.+|||+++|++..|.++++++.+...|+||+|+.+.++|.+||++|++||++|+++...+.|++++|
T Consensus 54 P~~~vG~DAD~~l~Dp~~~~~v~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~~~ge~~~~~g~G~~i~r 126 (126)
T d1gkra1 54 PTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR 126 (126)
T ss_dssp ESCCTTSBCCEEEEESCCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC
T ss_pred cceeecccchhheeccccceeccHHHHHhhhcccccCCcEEEeEEEEEEECCEEEEECCEEEecCCCCeEccC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999875
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=9.3e-12 Score=116.75 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=44.1
Q ss_pred HHHhcCCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCCCCCCc
Q 009410 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 431 (535)
Q Consensus 354 ~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~~G 431 (535)
.++++|+.+.++||..+.... .+...++.+++..|||+.|||+++|.|||++||+++++|
T Consensus 238 ~~~~~g~~~~~gtd~~~g~~~------------------~l~~~~~~~v~~~gls~~~al~~aT~n~A~~LGldd~iG 297 (297)
T d1yrra2 238 TIYYRNGLCVDENGTLSGSSL------------------TMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLG 297 (297)
T ss_dssp EEEECSSCEECTTCCEEEBCC------------------CHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred eEEEeCCEEEecCCCCccchh------------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCcCcC
Confidence 345678999999995432111 122233345666789999999999999999999999887
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.22 E-value=1.8e-11 Score=83.31 Aligned_cols=52 Identities=29% Similarity=0.444 Sum_probs=45.8
Q ss_pred ccEEEEccEEEcCCC--ceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEee
Q 009410 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~--~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlP 105 (535)
.|++|+|++|+|+.+ ...++|+|+||||++|++... .++.++||++|++|+|
T Consensus 2 ~DllIkn~~i~d~~~~~~~~~di~I~~g~I~~Ig~~~~-~~~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 2 FDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55 (55)
T ss_dssp BSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEE
T ss_pred CcEEEECCEEECCCCCceeEEEEEEECCEEEEEccCCC-CCCCEEEECCCCEECC
Confidence 689999999999875 468899999999999998654 4568999999999999
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.21 E-value=2.8e-12 Score=101.57 Aligned_cols=72 Identities=29% Similarity=0.434 Sum_probs=65.1
Q ss_pred hHHHHHHcCCCC--CCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 417 STECARIFNVYP--RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 417 T~~~A~~lgl~~--~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
+.++|+.+.... ..|.|++|..|||+|+|++..|.++.+++.+...|+||+|..+.++|.+||++|++||+|
T Consensus 39 ~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~~~~Sk~~nspf~g~~l~G~v~~T~~~G~~v~~d 112 (112)
T d1xrta1 39 LVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 112 (112)
T ss_dssp CCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred CcccceEEehhcccccceeecccceEEEEecCCccEEECHHHccCcCCCceecCCEEeeEEEEEEECCEEEEeC
Confidence 456777775432 359999999999999999999999999999999999999999999999999999999986
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=2.6e-11 Score=99.63 Aligned_cols=64 Identities=31% Similarity=0.561 Sum_probs=58.8
Q ss_pred cEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecc-cccccccccc
Q 009410 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG-IDPHTHLAME 117 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGl-ID~H~H~~~~ 117 (535)
.++|+|++|++.+....++|+|+||+|.+|+++...+.++++||++|++|+||. .|+|.|+..+
T Consensus 2 k~lIkng~iv~~~~~~~~DilIedG~I~~Ig~~l~~~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp 66 (142)
T d1kcxa1 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADVVIWDP 66 (142)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCCSCSSCEEEECTTCEEECCTTSBCCEEEEEE
T ss_pred cEEEECCEEECCCCcEEeeEEEECCEEeEEeccCCCCccceeechhhcceeecccccceEEEEec
Confidence 489999999998777789999999999999998877777999999999999998 9999999876
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.16 E-value=2.2e-13 Score=102.22 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=53.1
Q ss_pred HHHHHHHhHHHHHHcCCCCC--CccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEE
Q 009410 410 TDYVRLTSTECARIFNVYPR--KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 487 (535)
Q Consensus 410 ~eal~~~T~~~A~~lgl~~~--~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~ 487 (535)
.++|+++|.|+|++++++++ +|+|++||.|||+++++||+.++. ...+|..||++|+++.+
T Consensus 31 i~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~dI~-----------------~l~~i~~Vik~G~v~k~ 93 (95)
T d3be7a1 31 IAEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLANIR-----------------TLEEVAFVMKEGKVYKR 93 (95)
T ss_dssp EEEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTTCGG-----------------GTTSCCEEEETTEEEEE
T ss_pred HHHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchhhhH-----------------HhcCCCEEEECCEEEcC
Confidence 35688899999999999877 599999999999999999765543 24578999999998877
Q ss_pred CC
Q 009410 488 ND 489 (535)
Q Consensus 488 ~~ 489 (535)
+|
T Consensus 94 e~ 95 (95)
T d3be7a1 94 EG 95 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.15 E-value=2.3e-12 Score=105.96 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 407 ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
.+.++++.++|.++|+.+|.++..|+|++||.|||+++|.+.+...+..+ +.....|.+. ...|++||++||+|+
T Consensus 35 ~~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~~ADli~~d~~~p~~~p~~d---p~~~lV~~~~--~~~V~~v~V~G~~vv 109 (139)
T d2paja1 35 DTIDAIGALAPRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFGLHD---PAIGPVASGG--RPSVMALFSAGKRVV 109 (139)
T ss_dssp TEEEEESSCCCCTTCEEEECBTCEEECSTTSBCCEEEEECCSGGGTTCSS---GGGHHHHSCS--CCEEEEEEETTEEEE
T ss_pred ccHHHHHhhhhhccchhcCCCCccceeccCCcccEEEEcCCCcccCCCCC---HHHHHHHhhC--cCcceeEEEcCEEEE
Confidence 34556666899999999999888999999999999999999887766433 3334455544 458999999999999
Q ss_pred ECCeecccC
Q 009410 487 ENDELNVVP 495 (535)
Q Consensus 487 ~~~~~~~~~ 495 (535)
+||+++..|
T Consensus 110 ~dg~l~~iD 118 (139)
T d2paja1 110 VDDLIEGVD 118 (139)
T ss_dssp ETTBCTTCC
T ss_pred ECCEeccCC
Confidence 999999986
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.14 E-value=5.3e-13 Score=106.63 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=58.1
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 407 ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
++..++++++|.+||+++++++++|+|++||.|||+|||.+++..+ ||.-. ...|.+||++|++||
T Consensus 46 l~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~ad~~~~~~~~~~~~------------~y~~~--~~~v~~vi~~G~iv~ 111 (113)
T d2bb0a1 46 VFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMYI------------PYHYG--VNHVHQVMKNGTIVV 111 (113)
T ss_dssp EEEEETTTTTTCEEEEEEECTTCEEECSTTSBCCEEEESSSSTTHH------------HHSCS--SCCEEEEEETTEEEE
T ss_pred cCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcccEEEecCCchhhc------------hhhcC--CCChhEEEECCEEEE
Confidence 7888999999999999999999999999999999999998876544 33211 247999999999999
Q ss_pred EC
Q 009410 487 EN 488 (535)
Q Consensus 487 ~~ 488 (535)
..
T Consensus 112 ~r 113 (113)
T d2bb0a1 112 NR 113 (113)
T ss_dssp EC
T ss_pred eC
Confidence 63
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.09 E-value=1e-10 Score=93.86 Aligned_cols=74 Identities=24% Similarity=0.477 Sum_probs=69.4
Q ss_pred cccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc
Q 009410 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
.+-|| ||++++|++..+.++++++.+...|+||+|+.+.+.|..|+++|+.||++|+++..++.|++++|+|+-
T Consensus 49 ~v~~g--~d~~~~d~~~~~tis~~~~~s~~~~tpfeG~~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l~R~P~~ 122 (123)
T d1gkpa1 49 YVFPG--ADLVVYDPQYRGTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMY 122 (123)
T ss_dssp EEEEC--CCEEEEETTCCEECCGGGCCSSSSCCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCCCCCC
T ss_pred eEecC--cceEEEecccccccchhhhhcccccccccccEEeeEEEEEEECCEEEEECCEEEecCCCCeEeCCCCCC
Confidence 45667 699999999999999999999999999999999999999999999999999999999999999998874
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.08 E-value=9.8e-11 Score=94.59 Aligned_cols=75 Identities=32% Similarity=0.640 Sum_probs=71.3
Q ss_pred ccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc
Q 009410 433 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507 (535)
Q Consensus 433 I~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
+.+|..|||+++|++..+.++++++.+...|+||+|+.+.+.|.+||++|+.||++|++...++.|++++|++|+
T Consensus 52 g~i~~~~~~~i~dP~~~~tIt~~~~~s~~~~tpyeG~~~~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l~R~~~~ 126 (127)
T d1nfga1 52 IAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKYK 126 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGGGSCSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCCCSCC
T ss_pred ecccccccceeeccccceEEehHHhccccCcCCCcCCEEeeEEEEEEECCEEEEECCEEeecCCCCeEccCCCCC
Confidence 577889999999999999999999999999999999999999999999999999999999999999999998875
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.07 E-value=1.3e-10 Score=96.27 Aligned_cols=65 Identities=38% Similarity=0.526 Sum_probs=57.9
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeec-ccccccccccc
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHTHLAME 117 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPG-lID~H~H~~~~ 117 (535)
.+++|+||+|++.+....++|+|+||+|.+|+.+...+.++++||++|++++++ ..|+|.|+..+
T Consensus 2 ~~iLIkng~iv~~~~~~~~DIlI~~G~I~~I~~~i~~~~~~~iida~gk~v~i~~G~dad~~i~dp 67 (150)
T d2ftwa1 2 GTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDGDIVIWDP 67 (150)
T ss_dssp CCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEECSTTSBCCEEEEEE
T ss_pred CCEEEECCEEECCCCcEEeeEEEECCEEEEEeccCCCCCccEEEecccceeeeecCccCceEEEec
Confidence 459999999999877788999999999999999887667899999999988666 59999999876
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=5.1e-13 Score=106.58 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=68.7
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 407 ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
.+.+.++.++|..+|.++|. ...|+|++|+.|||+++|.+.++..+..++.+. ..|.+ .++|.+||++|++|+
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~-~~~GrIe~G~~ADivviDl~~p~~~p~~dp~~~---lV~~~---~~~V~~V~V~Gk~Vv 98 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGK-LVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNH---LVHAF---SGEVFATMVAGKWIY 98 (123)
T ss_dssp TEEEEEEESSCCCSEECTTE-EEEESCCTTSBCCEEEEECCSGGGCSGGGHHHH---HHHTC---CSCCSEEEETTEEEE
T ss_pred ccHHHHHhhhhccChhhcCC-ccccccCCCCCcCEEEEeCCCCcccchhhhHHH---HHhcc---CCCccEEEECCEEEE
Confidence 57888999999999999998 679999999999999999999887775544433 33333 257999999999999
Q ss_pred ECCeecccC
Q 009410 487 ENDELNVVP 495 (535)
Q Consensus 487 ~~~~~~~~~ 495 (535)
+||+++..+
T Consensus 99 ~dG~~~~iD 107 (123)
T d1p1ma1 99 FDGEYPTID 107 (123)
T ss_dssp ETTBCTTSC
T ss_pred ECCeEcccC
Confidence 999999876
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.06 E-value=1.5e-10 Score=93.89 Aligned_cols=75 Identities=36% Similarity=0.664 Sum_probs=70.9
Q ss_pred ccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc
Q 009410 433 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507 (535)
Q Consensus 433 I~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
+.+|..||++++|++..+.++++++.+...|+||+|..+.+.|.+||++|++||++++++..++.|++++|+++.
T Consensus 53 ~~v~~~~~~~~~dp~~~~~i~~~~~~s~~~~tpf~G~~~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv~R~~~g 127 (128)
T d1k1da1 53 IVVGSDADLVIFDPNIERVISAETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYLKRAKYG 127 (128)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTTTCCSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCCCCSC
T ss_pred eecccccceEEeeccccEEEeccccccccceeeecCcEEEEEEEEEEECCEEEEECCEEEecCCCCeEecCCCCC
Confidence 567889999999999999999999999999999999999999999999999999999999999999999988763
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=9.7e-09 Score=96.78 Aligned_cols=259 Identities=14% Similarity=0.105 Sum_probs=136.4
Q ss_pred ccccccccccccc---CC-----CCchhhhHHHHHHHHhCCcEEEeccccCCCC-ChHHHHHHHHHHhcccccccceeee
Q 009410 106 GGIDPHTHLAMEF---MG-----SETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMA 176 (535)
Q Consensus 106 GlID~H~H~~~~~---~g-----~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (535)
|++|+|+|+...+ .. ....+.....+..+.+.||++++++...... ......+...+.+.+.....+++..
T Consensus 6 G~~dtH~Hl~~d~~~~~~d~~~~~d~~~~~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~ 85 (291)
T d1bf6a_ 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 85 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred cceeeccCccCChhHhccChHhhhhhHHHHHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCc
Confidence 8999999985321 00 0112233344566788999999987433222 2333333333333334444454432
Q ss_pred eecC------C-hhhHHHHHHHHHHcCC-------CEEEEE-eecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009410 177 ITKW------D-EVVSDEMEVMVKEKGI-------NSFKFF-MAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (535)
Q Consensus 177 ~~~~------~-~~~~~~~~~~~~~~g~-------~~ik~~-~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~ 241 (535)
.... + ++..+.+.+.+ ..+. ..++.. .++........+.+++.++.|++.|+++.+|+......
T Consensus 86 ~~~p~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~IGe~g~d~~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~~~~ 164 (291)
T d1bf6a_ 86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 164 (291)
T ss_dssp GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSH
T ss_pred ccCCcccCcCCHHHHHHHHHHHH-HHHHhccCceEEEEEeeccccCCCCHHHHHHHHHHHHHHHHhCCCeEEeccchhhh
Confidence 2111 1 12222222222 1221 124322 22221112234668999999999999999998644333
Q ss_pred HHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEc-cCHHHHHHHHHHHHcCCcEEeccccceEe
Q 009410 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV-MSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (535)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~ 320 (535)
.+.+..+.+.|.. ..+..+.|+ .+.+ .+.++++.+.|+.+..+....
T Consensus 165 ~e~~~~l~~~~~~----------------------------~~~~~~~H~~f~~~-~e~~~~~~~~G~~i~~~g~~~--- 212 (291)
T d1bf6a_ 165 LEQLALLQAHGVD----------------------------LSRVTVGHCDLKDN-LDNILKMIDLGAYVQFDTIGK--- 212 (291)
T ss_dssp HHHHHHHHHTTCC----------------------------GGGEEECCCCSSCC-HHHHHHHHHTTCEEEECCTTC---
T ss_pred HHHHHHHHHhCCC----------------------------cccceecccCCCCC-HHHHHHHHhcCeeEEeccccc---
Confidence 3444444444432 123467788 4444 388888889998776543210
Q ss_pred eCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcC--CeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHH
Q 009410 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVW 398 (535)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~ 398 (535)
... ++ .......++++++.+ -+++++||. |+....... .-+ +....+...+
T Consensus 213 ----------------~~~-~~--~~~~~~~~~~lv~~~p~drilleTD~-p~~~p~~~~------g~~-~~~~~~~~~~ 265 (291)
T d1bf6a_ 213 ----------------NSY-YP--DEKRIAMLHALRDRGLLNRVMLSMDI-TRRSHLKAN------GGY-GYDYLLTTFI 265 (291)
T ss_dssp ----------------TTT-SC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSGGG------TSC-CTTHHHHTHH
T ss_pred ----------------ccC-Cc--HHHhHHHHHHHHHhCCchhEEEecCC-CCccccccC------CCC-CchhHHHHHH
Confidence 000 00 011124567788776 458999994 433222111 111 1112233334
Q ss_pred HHHHhcCCCCHHHHHHHHhHHHHHHcC
Q 009410 399 DTMVESGQISVTDYVRLTSTECARIFN 425 (535)
Q Consensus 399 ~~~~~~~~ls~~eal~~~T~~~A~~lg 425 (535)
..+.+ .|+|.+++-+..+.||+++|.
T Consensus 266 ~~l~~-~g~s~e~i~~i~~~Np~rlf~ 291 (291)
T d1bf6a_ 266 PQLRQ-SGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp HHHHH-TTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 33333 579999999999999999874
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.00 E-value=4.1e-10 Score=91.20 Aligned_cols=76 Identities=37% Similarity=0.639 Sum_probs=72.0
Q ss_pred cccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecCCCc
Q 009410 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 507 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~~~~ 507 (535)
-+.+|..|||+++|++..+.++++++.+...|+||+|+.+.+.|..|+++|+.|+++|++....+.|++++|++|.
T Consensus 51 Pg~i~~~~~~~i~dp~~~~tI~~~~~~s~~~~tpfeG~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fi~R~~f~ 126 (127)
T d1ynya1 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKRTTFE 126 (127)
T ss_dssp ECSTTSBCCEEEEEEEEEEEECTTTCCSSSSCCTTTTEEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCCCC
T ss_pred cccccccchhhhhccccceEEeehhhhhccCcCCcCCCEEeeEEEEEEECCEEEEECCEEeecCCCceEecCCCCC
Confidence 4677999999999999999999999999999999999999999999999999999999999999899999998874
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=98.84 E-value=3e-09 Score=87.03 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=67.0
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCC------------CCCCceEEecCCCEEeecccccccccccccC
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~------------~~~~~~vID~~G~~vlPGlID~H~H~~~~~~ 119 (535)
..+++|+|+-|+|..++..++|-|+||||+.||.... +..++++|.++|+++.||-||.|.|+...
T Consensus 66 ~~d~vitn~~i~d~~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHFp~q-- 143 (180)
T d4ubpc1 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVK-- 143 (180)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGTTTS--
T ss_pred cceEEEeeEEEecCCCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhcCCC--
Confidence 5789999999999878889999999999999987321 12368999999999999999999998543
Q ss_pred CCCchhhhHHHHHHHHhCCcEEEeccc
Q 009410 120 GSETIDDFFSGQAAALAGGTTMHIDFV 146 (535)
Q Consensus 120 g~~~~~~~~~~~~~~l~~GvTtv~d~~ 146 (535)
+ ..++++|+|+.--+.
T Consensus 144 ----p-------e~aLksG~tt~Gp~g 159 (180)
T d4ubpc1 144 ----A-------DRVIKGGIIAYAQIG 159 (180)
T ss_dssp ----C-------SEEEETTEEEEEEEC
T ss_pred ----H-------HHHHhcCceeEccCC
Confidence 1 234789999986543
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=98.84 E-value=9.2e-09 Score=93.97 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=85.0
Q ss_pred cccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCC-C-------ChHHHHHHHHHHhcccccccceeeeeec
Q 009410 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN-G-------SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (535)
Q Consensus 108 ID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (535)
||.|+|+-.+ . ....+|.+||||++-.+..+. + .....+..+.+.....++++++..-...
T Consensus 2 iDtHvHfi~P--q---------q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~ 70 (385)
T d1ejxc2 2 IDTHIHWICP--Q---------QAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNV 70 (385)
T ss_dssp EEEEEECSCT--T---------HHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred ccccccccCH--H---------HHHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhhhCCcceeeeecccc
Confidence 8999998766 1 156789999999996543322 1 3456677777777788888888664332
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009410 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (535)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 240 (535)
. ..+.+.+.+ +.|+.++|+.-++ ..++..+...+..|.++++++.+|..+.++
T Consensus 71 s---~~~~l~eqi-~AGa~GlKiHEDw----Gatpa~id~~L~vad~~dvqv~iHtDtlNE 123 (385)
T d1ejxc2 71 S---QPDALREQV-AAGVIGLKIHEDW----GATPAAIDCALTVADEMDIQVALHSDTLNE 123 (385)
T ss_dssp S---SHHHHHHHH-HHTCSEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCS
T ss_pred C---ChHHHHHHH-HhhhceecCCccc----ccChHHHHHHHHhHhhcCceEEEecccccc
Confidence 2 234566666 7899999997554 468999999999999999999999866543
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=1.4e-09 Score=101.77 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=34.4
Q ss_pred cccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCC
Q 009410 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150 (535)
Q Consensus 106 GlID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~ 150 (535)
||||+|+|+..+ +..+..++....+.++++||||++++....+
T Consensus 1 GlID~HvH~~~~--~~~~~~~~~~~~~~~l~~GvTTv~~~~~t~~ 43 (288)
T d1o12a2 1 GFVDPHIHGVVG--ADTMNCDFSEMEEFLYSQGVTTFLATTVSTS 43 (288)
T ss_dssp CEEEEEECEETT--EETTTTCHHHHHHHHHTTTEEEEEEECCSCC
T ss_pred CeEEecccCCCC--CccccccHHHHHHHHHhCCeEEEcCCCCCCC
Confidence 899999998776 4455666777788999999999998865443
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=98.80 E-value=3.8e-09 Score=72.89 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=44.0
Q ss_pred cccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeec
Q 009410 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 503 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~ 503 (535)
.|++|+.|||||+|++.... . ......+.+ ...+.+||+||++++++|+++.. .+|++|++
T Consensus 1 ri~~G~~ADlvvfDp~~i~d--~--~~~~~~~~~------~~Gi~~v~VnG~~v~~~g~~~~~-~~G~~lrR 61 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPATVAD--S--ATFEHPTER------AAGIHSVYVNGAAVWEDQSFTGQ-HAGRVLNR 61 (61)
T ss_dssp SCCTTSBCCEEEECTTTCBC--C--CCSSSTTCC------CBSEEEEEETTEEEEETTEECSC-CCCCBCCC
T ss_pred CCCCCcCCCEEEECHHHccC--c--ccccccccc------cceeEEEEECCEEEEECCEECCC-CCCEEeeC
Confidence 48999999999999874321 1 111112222 23589999999999999999874 58998874
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.63 E-value=4.8e-10 Score=87.72 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=50.6
Q ss_pred HhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 416 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 416 ~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
+|.++|+++++++++|++++||.||++++|.+.+...+ ..+.++.....|.+. .+.|+.||++||+||
T Consensus 42 at~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~-~~~~d~L~~li~~gd--~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 42 DKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPED-YDLTERLERFIYLGD--DRNIMKRYVCGNEIF 109 (109)
T ss_dssp GGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGG-SCHHHHHHHHHHHCC--GGGEEEEEETTEEEC
T ss_pred HHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhh-hhhhhHHHHheeeCC--CCceeEEEECCEECC
Confidence 58999999999999999999999999999977554332 122222222233333 358999999999997
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1e-06 Score=81.12 Aligned_cols=253 Identities=19% Similarity=0.167 Sum_probs=134.7
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHH--HHHHhcccccccceeeeeecCChhh
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA--YEKKAKNSCMDYGFHMAITKWDEVV 184 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (535)
|||+|+|+.... -....++.......+...||+.++..+.. ...+.+. .....+.....+|.|....... ..
T Consensus 3 lIDtH~Hld~~~-~e~~~~d~~~vi~~a~~~gv~~ii~~~~~----~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~-~~ 76 (265)
T d1yixa1 3 LVDSHCHLDGLD-YESLHKDVDDVLAKAAARDVKFCLAVATT----LPSYLHMRDLVGERDNVVFSCGVHPLNQNDP-YD 76 (265)
T ss_dssp EEEEEECGGGSC-TTTTCSSHHHHHHHHHHTTEEEEEECCSS----HHHHHHHHHHHCSCTTEEEEECCCTTCCSSC-CC
T ss_pred EEEecccCCccc-cchhhcCHHHHHHHHHHcCCCEEEEeeCC----HHHHHHHHHHHHhcccccccccccccccccc-cc
Confidence 799999996531 01112345555777889999988754221 2222222 2212223344455554222222 23
Q ss_pred HHHHHHHHHHcCCCEEE-EEeecCCCCc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccc
Q 009410 185 SDEMEVMVKEKGINSFK-FFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (535)
Q Consensus 185 ~~~~~~~~~~~g~~~ik-~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (535)
.+.+..+.......++. +.+++.-... ...+.+.+.++.|.++++|+.+|+..... +..+
T Consensus 77 ~e~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~~--~~~~-------------- 140 (265)
T d1yixa1 77 VEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARA--DTLA-------------- 140 (265)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHH--HHHH--------------
T ss_pred hHHHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHHH--HHHH--------------
Confidence 45566665444443333 3334432111 12345788899999999999999965421 1111
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEc
Q 009410 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (535)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (535)
.+........+ .+.|+.+.+. +.++.+.+.|..+..+... . +..
T Consensus 141 --------------il~~~~~~~~~-~v~H~FsG~~-~~a~~~l~~g~~~s~~g~~---------~----~~~------- 184 (265)
T d1yixa1 141 --------------ILREEKVTDCG-GVLHCFTEDR-ETAGKLLDLGFYISFSGIV---------T----FRN------- 184 (265)
T ss_dssp --------------HHHHTTGGGTC-EEETTCCSCH-HHHHHHHTTTCEEEECGGG---------G----STT-------
T ss_pred --------------HHHhhcccCcc-eEEEeecCCh-HHHHHHHHcCCeecCcccc---------c----cch-------
Confidence 11111111223 3679988776 7888888888777654332 0 000
Q ss_pred CCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 341 PPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 341 p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
...++++++. --++.+.||+ |+.... ++..-++- -..+...++.+.+--+++.+++.+..+.
T Consensus 185 --------~~~l~~~v~~iPldrlLlETD~-P~~~p~------~~~~~~n~-P~~i~~~~~~iA~i~~~~~~ev~~~~~~ 248 (265)
T d1yixa1 185 --------AEQLRDAARYVPLDRLLVETDS-PYLAPV------PHRGKENQ-PAMVRDVAEYMAVLKGVAVEELAQVTTD 248 (265)
T ss_dssp --------CHHHHHHHHHSCGGGEEECCCB-TSCCCT------TCTTSCCC-GGGHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred --------hHHHHHHHHhcchhceEeecCC-cccCcc------ccCCCCCC-cHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 0223333332 1248999994 443321 22221110 0012233333344447999999999999
Q ss_pred HHHHHcCCC-CCCccc
Q 009410 419 ECARIFNVY-PRKGAI 433 (535)
Q Consensus 419 ~~A~~lgl~-~~~GsI 433 (535)
|.-++||++ .++++|
T Consensus 249 Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 249 NFARLFHIDASRLQSI 264 (265)
T ss_dssp HHHHHTTCCGGGGCCC
T ss_pred HHHHHhCCCHHHhccc
Confidence 999999996 345555
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.55 E-value=6.7e-08 Score=75.84 Aligned_cols=54 Identities=30% Similarity=0.510 Sum_probs=47.0
Q ss_pred ccEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecc
Q 009410 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGl 107 (535)
+.++|+|++|+|+... ...+|+|++|+|++|++..+.+ .+++||++|+++.|||
T Consensus 2 ~~~likng~viDp~~g~~~~~DllI~~GkI~~I~~~i~~~-~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 2 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVP-EAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCCCS-SEEEEECTTSEEEECC
T ss_pred ceeEEeCeEEECCCCCccceeeEEEECCEEEEeecCCCcc-cceEEehhccccccee
Confidence 5699999999997764 5789999999999999876544 5899999999999997
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=4.2e-06 Score=76.45 Aligned_cols=250 Identities=10% Similarity=0.048 Sum_probs=136.1
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeecC-ChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-DEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (535)
|||+|+|+... ...++.......+...||+.++..+... .............+..+..+|+|+..... .....
T Consensus 1 liD~H~HL~~~----~f~~d~~~vl~~a~~~gV~~ii~~~~~~--~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~~~~~ 74 (260)
T d1xwya1 1 MFDIGVNLTSS----QFAKDRDDVVACAFDAGVNGLLITGTNL--RESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATE 74 (260)
T ss_dssp CEEEEECTTSG----GGTTTHHHHHHHHHHTTCCEEEECCCSH--HHHHHHHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred CEEEEeCCCCh----HHhCCHHHHHHHHHHCCCCEEEEecCCH--HHHHHHHHHHHhCCcccchhhcCcchhhhhhhhHH
Confidence 69999999754 2233455567888999999998553221 22333333344444555566666633322 23334
Q ss_pred HHHHHHHHHcCCCEEE-EEeecCCCCcC---CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFK-FFMAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~~~~---~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+.+..+........+. +.+++.-.... ..+.+.+.++.|.++++|+.+|+.... .+..+.+
T Consensus 75 ~~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~--~~~~~il------------- 139 (260)
T d1xwya1 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAH--ERFMTLL------------- 139 (260)
T ss_dssp HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHH-------------
T ss_pred HHHHHHHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeeccch--hHHHHHH-------------
Confidence 4444444233333333 22343221111 135678888999999999999995432 1122111
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcC
Q 009410 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (535)
+.......+ .+.|+.+... +.++.+.+.|..+......- .
T Consensus 140 ---------------~~~~~~~~~-~v~H~f~g~~-~~~~~~~~~g~~~s~~g~~~---------~-------------- 179 (260)
T d1xwya1 140 ---------------EPWLDKLPG-AVLHCFTGTR-EEMQACVAHGIYIGITGWVC---------D-------------- 179 (260)
T ss_dssp ---------------GGGGGGSSC-EEECSCCCCH-HHHHHHHHTTCEEEECGGGG---------C--------------
T ss_pred ---------------HHhhccCcc-cchhhhhccH-HHHHHhhhhccccccCcccc---------c--------------
Confidence 111111123 4678888776 78888888898776653320 0
Q ss_pred CCCCcccHHHHHHHHhc-C-CeEEEeCCCCCCChhhhhcC-CCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhH
Q 009410 342 PIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFG-IDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTST 418 (535)
Q Consensus 342 ~~r~~~~~~~~~~~l~~-G-v~~~lgtD~~~~~~~~~~~~-~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~ 418 (535)
.. ....++++++. . -++++-||+ |+.......+ ...-.+-|. .+...++.+.+-.|++.+++.+..+.
T Consensus 180 ~~----~~~~~~~~~~~iPldrlllETD~-P~~~p~~~~~~~~~~~NeP~----~l~~v~~~lA~~~g~~~~ev~~~~~~ 250 (260)
T d1xwya1 180 ER----RGLELRELLPLIPAEKLLIETDA-PYLLPRDLTPKPSSRRNEPA----HLPHILQRIAHWRGEDAAWLAATTDA 250 (260)
T ss_dssp TT----TSHHHHHHGGGSCGGGEEECCCT-TSCCCTTCTTCCCSSCCCGG----GHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hh----hHHHHHHHHHhhhhhheeeecCC-CCCCCccccccccCCCCChH----HHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 00 00224444443 1 258999995 4433221000 001112232 23333334444457999999999999
Q ss_pred HHHHHcCC
Q 009410 419 ECARIFNV 426 (535)
Q Consensus 419 ~~A~~lgl 426 (535)
|.-++||+
T Consensus 251 N~~~~f~l 258 (260)
T d1xwya1 251 NVKTLFGI 258 (260)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCC
Confidence 99999997
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=1.2e-05 Score=73.28 Aligned_cols=245 Identities=16% Similarity=0.115 Sum_probs=129.6
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeec-CChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (535)
|||+|+|+... ...++.......+...||+.++..+... .............+.....+|.|..... ......
T Consensus 5 ~ID~H~HLd~~----~~~~d~~~~l~~a~~~gV~~~v~~~t~~--~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~ 78 (259)
T d1zzma1 5 FIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEA--ENFARVLALAENYQPLYAALGLHPGMLEKHSDVSL 78 (259)
T ss_dssp EEESCBCTTST----TTTTCHHHHHHHHHHTTEEEEEEECCSG--GGHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEeCcCCCCh----hhCcCHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHhcCccccccccCCchHhhccchhhH
Confidence 79999999643 2233445557778899999887553222 2233333333444444555565553322 222223
Q ss_pred HHHHHHHHHcCC--CEEE-EEeecCC--CC-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009410 186 DEMEVMVKEKGI--NSFK-FFMAYKG--SF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (535)
Q Consensus 186 ~~~~~~~~~~g~--~~ik-~~~~~~~--~~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (535)
+........... .++. +.+++.. .. ..-.+.+.+.++.|.++++++.+|+..... +..+.+..
T Consensus 79 ~~~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~~--~~~~~l~~--------- 147 (259)
T d1zzma1 79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHD--KLAMHLKR--------- 147 (259)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH--HHHHHHHH---------
T ss_pred HHHHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHHH--HHHHhhhc---------
Confidence 333333322222 2222 1222221 11 111457888999999999999999954421 11111111
Q ss_pred cccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEE
Q 009410 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (535)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (535)
....+..+.|+.+.+. +.++.+.+.|..+..+... .. ..
T Consensus 148 ---------------------~~~~~~~i~H~f~g~~-~~~~~~l~~g~~~si~~~~---------~~----~~------ 186 (259)
T d1zzma1 148 ---------------------HDLPRTGVVHGFSGSL-QQAERFVQLGYKIGVGGTI---------TY----PR------ 186 (259)
T ss_dssp ---------------------HCCTTCEEETTCCSCH-HHHHHHHHTTCEEEECGGG---------GC----TT------
T ss_pred ---------------------cccccceeeecccCCH-HHHHHHHHcCCCccccccc---------cc----cc------
Confidence 1112234679887776 7888888888766654322 00 00
Q ss_pred cCCCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHh
Q 009410 340 SPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTS 417 (535)
Q Consensus 340 ~p~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T 417 (535)
. ..++++++. --++++.||+ |+.... ++...++ .-..+...++.+.+-.+++.+++.+..+
T Consensus 187 -----~----~~~~~~v~~iPldriL~ETD~-P~~~~~------~~~~~~~-~P~~~~~~~~~iA~i~~~~~~ev~~~~~ 249 (259)
T d1zzma1 187 -----A----SKTRDVIAKLPLASLLLETDA-PDMPLN------GFQGQPN-RPEQAARVFAVLCELRREPADEIAQALL 249 (259)
T ss_dssp -----T----CSHHHHHHHSCGGGEEECCCB-TSSCCT------TCTTSCC-CGGGHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -----h----HHHHHHHHhhccceEEEecCC-CCcCCC------cCCCCCC-chHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 002222222 1348999994 432211 2222211 0012223344444555799999999999
Q ss_pred HHHHHHcCC
Q 009410 418 TECARIFNV 426 (535)
Q Consensus 418 ~~~A~~lgl 426 (535)
.|.-++||+
T Consensus 250 ~N~~rlf~l 258 (259)
T d1zzma1 250 NNTYTLFNV 258 (259)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCC
Confidence 999999987
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=2e-06 Score=78.64 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=131.7
Q ss_pred ccccccccccccCCCCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeeec-CChhhH
Q 009410 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (535)
Q Consensus 107 lID~H~H~~~~~~g~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (535)
+||+|+|+... ...++.......+...||+.++..+... ..........+..+..+..+|+|+.... ...+..
T Consensus 5 lIDsH~HLd~~----~~~~d~~~vi~~a~~~gV~~ii~~~~~~--~~~~~~~~la~~~~~i~~a~GiHP~~~~~~~~~~~ 78 (260)
T d1j6oa_ 5 MVDTHAHLHFH----QFDDDRNAVISSFEENNIEFVVNVGVNL--EDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDFI 78 (260)
T ss_dssp EEEEEECTTSG----GGTTTHHHHHHTTTTTTEEEEEEECSSH--HHHHHHHHHHTTCTTEEEEECCCGGGGGGCCTTHH
T ss_pred cEEeccCCCCh----hhCcCHHHHHHHHHHCCCCEEEEecCCH--HHHHHHHHHHHhccccccccccChhhcccccchhh
Confidence 79999998654 1223444556667889999888543211 1111111222222334455666653322 233445
Q ss_pred HHHHHHHHHcCCCEEE-EEeecCCCCc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009410 186 DEMEVMVKEKGINSFK-FFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (535)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (535)
+.+..+.+.....+++ +.+++.-... .-.+.+++.++.|.++++|+.+|+.... .+.++.+...+..
T Consensus 79 ~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~--~~~~~il~~~~~~------- 149 (260)
T d1j6oa_ 79 EHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY--SEAYEILRTESLP------- 149 (260)
T ss_dssp HHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHSCCC-------
T ss_pred hhhHHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeeccch--HHHHHHHHhhcCC-------
Confidence 5566655333333343 3344432111 1245689999999999999999995442 2222222222211
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCEEEEEccCHHHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcC
Q 009410 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (535)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (535)
..+ .+.|+.+.+. +.++.+.+.|..+..+... . +.
T Consensus 150 ---------------------~~~-~i~H~fsG~~-~~~~~~l~~g~~is~~g~~---------~----~~--------- 184 (260)
T d1j6oa_ 150 ---------------------EKR-GVIHAFSSDY-EWAKKFIDLGFLLGIGGPV---------T----YP--------- 184 (260)
T ss_dssp ---------------------SSC-EEETTCCSCH-HHHHHHHHHTEEEEECGGG---------G----CT---------
T ss_pred ---------------------CCC-eeeeccccCH-HHHHHHHhCCCceeecccc---------c----cc---------
Confidence 123 4679988776 8888888888776654321 0 00
Q ss_pred CCCCcccHHHHHHHHhc--CCeEEEeCCCCCCChhhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHH
Q 009410 342 PIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 419 (535)
Q Consensus 342 ~~r~~~~~~~~~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~ 419 (535)
+. ..++++++. --++++-||+ |+....... .-.+.|. .+...+..+.+-.+++.+++.+..+.|
T Consensus 185 --~~----~~~~~~v~~iPldrlllETD~-P~l~p~~~~---~~~n~P~----~l~~v~~~iA~~~~~~~~ev~~~~~~N 250 (260)
T d1j6oa_ 185 --KN----EALREVVKRVGLEYIVLETDC-PFLPPQPFR---GKRNEPK----YLKYVVETISQVLGVPEAKVDEATTEN 250 (260)
T ss_dssp --TC----HHHHHHHHHHCGGGEEECCCB-TSCCCGGGT---TSCCCGG----GHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred --hH----HHHHHHHHhcccceEEEecCC-CCCCCcccC---CCCCChH----HHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 00 123333332 1358999994 443322110 1112222 223333334444579999999999999
Q ss_pred HHHHcC
Q 009410 420 CARIFN 425 (535)
Q Consensus 420 ~A~~lg 425 (535)
.-++|+
T Consensus 251 ~~rlF~ 256 (260)
T d1j6oa_ 251 ARRIFL 256 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=2.8e-07 Score=75.21 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=56.9
Q ss_pred cccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCC------------CCCCceEEecCCCEEeecc----cccccccc
Q 009410 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGG----IDPHTHLA 115 (535)
Q Consensus 52 ~~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~------------~~~~~~vID~~G~~vlPGl----ID~H~H~~ 115 (535)
..|++|+|+.|+|..++..++|-|+||||+.||+... +..++++|.++|+++.||= ||.|.|..
T Consensus 65 ~~D~vitna~iid~~Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h~hgI 144 (180)
T d1e9yb1 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPAFFGV 144 (180)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTTTTTT
T ss_pred ccceEEEeeEEeccCCeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchhhcCC
Confidence 5799999999999888899999999999999997422 1236899999999999995 99999987
Q ss_pred cc
Q 009410 116 ME 117 (535)
Q Consensus 116 ~~ 117 (535)
.+
T Consensus 145 kP 146 (180)
T d1e9yb1 145 KP 146 (180)
T ss_dssp CC
T ss_pred CH
Confidence 65
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.34 E-value=5.3e-09 Score=80.98 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=52.0
Q ss_pred CCHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 407 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 407 ls~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
+.+++.+...|.++++.+.++.++|+|++||+|||+|||.+.+..+ +|.-- ...++.||++||+|
T Consensus 38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~~~~l------------~Y~~g--~~~~~~v~~~G~~v 102 (103)
T d2puza1 38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAEL------------VYRIG--FNPLHARIFKGQKV 102 (103)
T ss_dssp EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSSTTHH------------HHCBS--CCCEEEEEETTEEC
T ss_pred cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCCHHHH------------HHhhc--CCChhEEEECCEEc
Confidence 5566777778889999999999999999999999999998655433 33311 24789999999987
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.08 E-value=5.1e-06 Score=63.73 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=53.1
Q ss_pred cEEEEccEEEcCCCc-------eeeeEEEeCCEEEEeeCCCCCC----CCceEEecCCCEEeecccccccccccc
Q 009410 54 KILIKGGTVVNAHHQ-------QIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAME 117 (535)
Q Consensus 54 ~~vi~n~~vi~~~~~-------~~~~I~I~~G~I~~Vg~~~~~~----~~~~vID~~G~~vlPGlID~H~H~~~~ 117 (535)
+.+++|++|.|+++. +++.|+|+||||.+||+..+.+ .++++||++|+++.+..-..+-++-..
T Consensus 2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~ 76 (103)
T d2puza1 2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWD 76 (103)
T ss_dssp EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEEC
T ss_pred cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEc
Confidence 579999999997642 6899999999999999976654 257999999999999888777776543
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.89 E-value=2.1e-06 Score=64.48 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=38.1
Q ss_pred HcCCCCCCccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 423 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 423 ~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
...++.++|+|++||.|||++||.+.+..+ +|.-- ...+..||++|++|.
T Consensus 53 ~~d~~gr~~tlevGk~ADlviwd~~~~~~L------------~Y~~G--~n~i~~vi~~G~~V~ 102 (103)
T d2q09a1 53 WQDMKGKLVTLRVGMLADFLVWNCGHPAEL------------SYLIG--VDQLVSRVVNGEETL 102 (103)
T ss_dssp SEECTTCEEECCTTSBCCEEEESSSCTTHH------------HHSCS--CCCEEEEEETTEECC
T ss_pred hhhcccceEEecCCCccCEEEEcCCCHHHh------------hhhcC--CCCceEEEECCEEee
Confidence 345667999999999999999998776544 33311 236899999999873
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=97.88 E-value=7.4e-06 Score=68.47 Aligned_cols=73 Identities=30% Similarity=0.469 Sum_probs=64.5
Q ss_pred cCC-CCccEEEEcCCC--------ceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEECCeecccCCCceEeecC
Q 009410 434 LVG-SDADIIIFNPNS--------SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 504 (535)
Q Consensus 434 ~~G-k~ADlvvld~~~--------~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~~~~~~~~~~~~~~~~~ 504 (535)
-+| -+||+.++++.. .+.++++.+.+...|+||++..+.+.+..|+++|+.||++|+++...+.|+++.|.
T Consensus 57 ~pg~~d~Hih~~~~~~~~~~~~~~~~tIs~~~~~~~~~~t~~eg~~~~G~~~~ti~rG~~v~~~g~~~~~~g~G~fi~R~ 136 (156)
T d2fvka1 57 LPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKRG 136 (156)
T ss_dssp CTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGCSSSSCCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCCCC
T ss_pred cccccccceEEEeeccccccccccceEEehhhcccccccccceeEEEccceEEEEECCEEEEECCEEEecCCCCcccCCC
Confidence 466 789999998874 45588888999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 009410 505 PF 506 (535)
Q Consensus 505 ~~ 506 (535)
..
T Consensus 137 ~~ 138 (156)
T d2fvka1 137 KS 138 (156)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=97.63 E-value=0.00019 Score=68.41 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCH-
Q 009410 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM- 294 (535)
Q Consensus 216 ~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~- 294 (535)
.+..+++.|++.|+++.+|+...... .+ ...+..++ ...+.. .+.|+...
T Consensus 202 ~~~~~f~~ar~~gl~it~HaGE~~~~------------~~-------------~~~i~~ai---~~l~~~-RIgHGv~~~ 252 (357)
T d2amxa1 202 DHKDVYHSVRDHGLHLTVHAGEDATL------------PN-------------LNTLYTAI---NILNVE-RIGHGIRVS 252 (357)
T ss_dssp GGHHHHHHHHHTTCEEEEEESCCTTC------------SS-------------SHHHHHHH---HTSCCS-EEEECGGGG
T ss_pred hhHHHHHHHHhcCCcccccccccCCC------------CC-------------hHHHHHHH---HccCCc-ccccchhee
Confidence 46788999999999999999543110 00 01111111 122333 47888764
Q ss_pred -HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCCh
Q 009410 295 -DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373 (535)
Q Consensus 295 -~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~ 373 (535)
+. +.++.++++++++..||+++.....-..+. .-+++.++++|++++++||.+...
T Consensus 253 ~d~-~l~~~l~~~~I~leiCPtSN~~~~~~~~~~---------------------~HP~~~l~~~Gv~v~l~TDDp~~f- 309 (357)
T d2amxa1 253 ESD-ELIELVKKKDILLEVCPISNLLLNNVKSMD---------------------THPIRKLYDAGVKVSVNSDDPGMF- 309 (357)
T ss_dssp GCH-HHHHHHHHHTCEEEECHHHHHHTTSSSCST---------------------TCTHHHHHHTTCEEEECCBCHHHH-
T ss_pred cCH-HHHHHHHHhCceEEECCcchhhhccCCCcc---------------------cCHHHHHHHCCCeEEEeCCCchhh-
Confidence 33 788899999999999999743321111110 023899999999999999964310
Q ss_pred hhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 374 TQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
.. .+...+..++...++|.++. +.++.|+-+.-.+
T Consensus 310 ~t-----------------~ls~ey~~~~~~~~ls~~el-~~l~~nsi~~sF~ 344 (357)
T d2amxa1 310 LS-----------------NINDNYEKLYIHLNFTLEEF-MIMNNWAFEKSFV 344 (357)
T ss_dssp TC-----------------CHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCS
T ss_pred CC-----------------CHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHhCC
Confidence 00 11122223344557999994 5577777766554
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=0.00093 Score=63.29 Aligned_cols=140 Identities=12% Similarity=-0.011 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCChhhHHHHHHHHHHHHHhcCCCEEEEEccCH
Q 009410 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (535)
Q Consensus 215 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 294 (535)
..+.++++.|++.|+++.+|+........... ++. ..+.. .+.|+...
T Consensus 192 ~~~~~~f~~ar~~gl~~t~HaGE~~~~~~i~~----------------------------ai~---~l~~~-RIGHG~~l 239 (349)
T d1a4ma_ 192 PGHVEAYEGAVKNGIHRTVHAGEVGSPEVVRE----------------------------AVD---ILKTE-RVGHGYHT 239 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHHHHHH----------------------------HHH---TSCCS-EEEECGGG
T ss_pred HHHHHHHHHHHHcCCceeeccCCCCChHHHHH----------------------------HHH---HhCCc-ccCCceec
Confidence 45778899999999999999965432222222 221 11222 47787543
Q ss_pred -HHHHHHHHHHHcCCcEEeccccceEeeCcccccCcCccccceeEEcCCCCCcccHHHHHHHHhcCCeEEEeCCCCCCCh
Q 009410 295 -DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373 (535)
Q Consensus 295 -~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~~Gv~~~lgtD~~~~~~ 373 (535)
+..+.++.++++++++..||+++.....-..+. .-+++.+++.|++++|+||......
T Consensus 240 ~~d~~l~~~~~~~~I~lEvCptSN~~~~~~~~~~---------------------~HP~~~~~~~gv~v~i~TDDp~~f~ 298 (349)
T d1a4ma_ 240 IEDEALYNRLLKENMHFEVCPWSSYLTGAWDPKT---------------------THAVVRFKNDKANYSLNTDDPLIFK 298 (349)
T ss_dssp GGSHHHHHHHHHTTCEEEECHHHHHHSSSSCTTS---------------------CCHHHHHHHTTCCEEECCBCTTTTT
T ss_pred ccCHHHHHHhhhcCceEEEcccccccccccCchh---------------------hHHHHHHHHCCCeEEEeCCCccccC
Confidence 222778889999999999999753321111111 1348899999999999999654321
Q ss_pred hhhhcCCCCcccCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHcCC
Q 009410 374 TQKAFGIDDFRKIPNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 426 (535)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl 426 (535)
. .+...+..+....+++.++. +....|+-+.-.+
T Consensus 299 t------------------~Ls~Ey~~a~~~~~l~~~~l-~~l~~nsi~~sf~ 332 (349)
T d1a4ma_ 299 S------------------TLDTDYQMTKKDMGFTEEEF-KRLNINAAKSSFL 332 (349)
T ss_dssp C------------------CHHHHHHHHHHTTTCCHHHH-HHHHHHHHHTSSC
T ss_pred C------------------CHHHHHHHHHHHhCcCHHHH-HHHHHHHHHHhCC
Confidence 1 12222223445668998884 5566666665554
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.40 E-value=1.9e-05 Score=63.38 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=49.2
Q ss_pred CHHHHHHHHhHHHHHHcCCCCCCccccCCCCccEEEEcCCCceeeec---------------CCccccCCCCCCCCeeEe
Q 009410 408 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITA---------------RSHHSRLDTNVYEGRRVK 472 (535)
Q Consensus 408 s~~eal~~~T~~~A~~lgl~~~~GsI~~Gk~ADlvvld~~~~~~i~~---------------~~~~~~~~~~p~~~~~~~ 472 (535)
-+.+.|+.. .-.|+...+++++|.+++||.|||||+|.+..-.+.. +++.+...-..+.|- .
T Consensus 47 G~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~tp~~~~r~~~~~~~~~~~~~~~~l~e~Lf~l~~lGD--D 123 (140)
T d2ooda1 47 GPYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGD--D 123 (140)
T ss_dssp EEHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCC--G
T ss_pred cCHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCCChHHHhhhhhcccccccchhhhhHHHHHHHHhhccC--C
Confidence 355556654 4468999999999999999999999999763211000 000000000011111 2
Q ss_pred eEEEEEEECCEEEEEC
Q 009410 473 GKVEVTIAGGRVVWEN 488 (535)
Q Consensus 473 ~~v~~v~~~Gr~V~~~ 488 (535)
+.|..||+.|+.||+.
T Consensus 124 R~I~~t~V~G~~v~~r 139 (140)
T d2ooda1 124 RCVDETWVMGKRLYKK 139 (140)
T ss_dssp GGEEEEEETTEEEEEC
T ss_pred CceEEEEECCEEEeec
Confidence 4799999999999975
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=97.17 E-value=0.012 Score=54.78 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCC-----CCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
++..+++++..++.|..++++...+.+ ...++...+..+.+.|.++|+++.+|...
T Consensus 107 ~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH~~~ 167 (325)
T d2dvta1 107 DAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (325)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred chhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEecCC
Confidence 456788888887789999988654432 13356778999999999999999999754
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=3.4e-05 Score=61.66 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=37.0
Q ss_pred CCCCccccCCCCccEEEEcCCCce---ee-----ecCCccccCCCCCCCCeeEeeEEEEEEECCEEEE
Q 009410 427 YPRKGAILVGSDADIIIFNPNSSF---EI-----TARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 486 (535)
Q Consensus 427 ~~~~GsI~~Gk~ADlvvld~~~~~---~i-----~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~ 486 (535)
+++.|..++||.||++++|.+... .. ..+.+.+......|.|- .+.|..|||+|+.|.
T Consensus 63 ~~~~g~FevGkeaD~ivID~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~gd--dr~I~~v~V~G~~Vv 128 (131)
T d2uz9a1 63 HHEFFMFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGD--DRNIEEVYVGGKQVV 128 (131)
T ss_dssp TTCEEECCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCC--GGGEEEEEETTEEEE
T ss_pred hccccccccCccccEEEEECCCccchhhhhccccccCcHHHHHHHHhhcCC--CCcEeEEEECCEEeC
Confidence 478999999999999999976431 11 01112222211233332 347999999999985
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.10 E-value=0.00072 Score=44.90 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=41.1
Q ss_pred EEEccEEEcCCCc-eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeecccccccccc
Q 009410 56 LIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115 (535)
Q Consensus 56 vi~n~~vi~~~~~-~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlID~H~H~~ 115 (535)
+|.++-|+|+-.. .-++|-+++|+|..|-.....+. .++||||+|.|.|-.
T Consensus 2 ~iE~VLIVDPidGEyTGdvEf~e~kI~~I~k~ectp~---------~ilMP~f~dg~~a~~ 53 (76)
T d1o12a1 2 IVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRECIPR---------GVLMPRIAEGTRADL 53 (76)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTEEEEEEECCSCCS---------SEEEECCSTTSBCCE
T ss_pred ceeeEEEEcCCCCcEeeeEEecCcEEEEEEEeccCCC---------eEEcccccCCccccE
Confidence 6788889987654 58999999999999987644332 589999999999843
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.95 E-value=0.011 Score=54.40 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
++..+++++..++.|+.++++...+.+. .++...+..+.+.|.++|+++.+|...
T Consensus 102 ~~a~~el~r~~~~~G~~Gi~~~~~~~~~-~~~dp~~~pi~~~~~e~~lpv~~H~~~ 156 (306)
T d2f6ka1 102 LDAVKTVQQALDQDGALGVTVPTNSRGL-YFGSPVLERVYQELDARQAIVALHPNE 156 (306)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESEETTE-ETTCGGGHHHHHHHHTTTCEEEEECCC
T ss_pred hHHHHHHHHHHhcccceEEEecCccccc-cCCCccchHHHHHHHHcCCceEeccCC
Confidence 4566778887766799999987655443 346677899999999999999999643
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=96.90 E-value=0.00055 Score=50.98 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=43.5
Q ss_pred ccEEEEccEEEcCCC-------ceeeeEEEeCCEEEEeeCCCCCC--CCceEEecCCCEE--eecc
Q 009410 53 SKILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFV--MPGG 107 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~-------~~~~~I~I~~G~I~~Vg~~~~~~--~~~~vID~~G~~v--lPGl 107 (535)
.+.+.+|+++-|+++ ++++.|+|++|+|..|+|..+.| .+..+.|++|+++ -+|.
T Consensus 2 cd~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~~~~~~~d~~gr~~tlevGk 67 (103)
T d2q09a1 2 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTLRVGM 67 (103)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEECCTTS
T ss_pred cceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCccccchhhhcccceEEecCCC
Confidence 467899999998764 26899999999999999976655 2456789999954 4553
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.37 E-value=0.0026 Score=47.07 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred ccEEEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeec
Q 009410 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG 106 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPG 106 (535)
.|++|+|++.+++. ..+|.|.+|||++|++.... ++.+++|++|+.=+-|
T Consensus 2 ~d~~i~~~~~~~g~---~~diai~~~ki~a~~~~~~~-~a~~~~~L~~~~y~sG 51 (101)
T d2icsa1 2 YDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATISG-SAKETIHLEPGTYVSA 51 (101)
T ss_dssp EEEEEEEEECTTSC---EEEEEEETTEEEEEESCCCC-CEEEEEECCTTCEEEE
T ss_pred ccEEEEcceecCCC---eEEEEeccCeeeeecccccc-cchheEecCCceeeee
Confidence 47999999998876 78999999999999987654 3689999998643333
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=96.11 E-value=0.021 Score=50.42 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=61.9
Q ss_pred cccccccccccc------CC--CCchhhhHHHHHHHHhCCcEEEeccccCCCCChHHHHHHHHHHhcccccccceeeeee
Q 009410 107 GIDPHTHLAMEF------MG--SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT 178 (535)
Q Consensus 107 lID~H~H~~~~~------~g--~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (535)
-||+|+|+...- .+ .......+.....+-++||+.++-+.........+......+..+.....++. ..
T Consensus 5 ~ID~H~Hl~~~~~~~~~~~~~~~~~~~~~e~ll~~m~~~gI~~~vl~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~ 81 (271)
T d2ffia1 5 AIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVVM---LE 81 (271)
T ss_dssp CEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCBBC---CC
T ss_pred EEeeeecccCCccccccccCCCCCCCCCHHHHHHHHHHcCCCEEEEECCCcccchhHHHHHHHHhhcCceEEEEE---Ee
Confidence 499999985330 00 01111233445666789999775331111111122222222222222111111 11
Q ss_pred cCChhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
... .......+. ..+...++...........+...+..+.+.+.++++.+..|....
T Consensus 82 ~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (271)
T d2ffia1 82 RDV--EQATLAEMA-RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQVA 138 (271)
T ss_dssp SSC--CHHHHHHHH-TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCTT
T ss_pred ccc--chHHHHHHH-HhhhccceeccccccCCCcccHhHHHHHHHHHHhCCCcccccCcc
Confidence 111 122233333 455566654433333344566678889999999999999998544
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=95.93 E-value=0.00098 Score=49.40 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=40.7
Q ss_pred hHHHHHHcCCCCC---CccccCCCCccEEEEcCCC-ceeeecCCccccCCCCCCCCeeEee----EEEEEEECCEEEEE
Q 009410 417 STECARIFNVYPR---KGAILVGSDADIIIFNPNS-SFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWE 487 (535)
Q Consensus 417 T~~~A~~lgl~~~---~GsI~~Gk~ADlvvld~~~-~~~i~~~~~~~~~~~~p~~~~~~~~----~v~~v~~~Gr~V~~ 487 (535)
|..+++.+.+... .|+|++|..||+.|++-.. .+.+ .-.+|....+ .+..++++|+ +|+
T Consensus 34 ~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~~-----------~Ds~G~~~~g~~~L~P~~tI~~G~-vyd 100 (101)
T d2icsa1 34 SGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKTL-----------TDSNGLTRVAKEQIRPIKTIIGGQ-IYD 100 (101)
T ss_dssp CCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEEE-----------ECTTSCEEEEEEEEEEEEEEETTE-EEE
T ss_pred cccchheEecCCceeeeeEecCCCeeeEEEEEEecCceEE-----------EeCCCCEEEeeEEEeEEEEEECCE-Eec
Confidence 4578888888543 6999999999999998542 1222 1223333333 5889999999 665
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.01 Score=43.80 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=39.0
Q ss_pred EEEccEEEcCCCceeeeEEEeCCEEEEeeCCCCC-CCCceEEecCCCEEeeccc
Q 009410 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGI 108 (535)
Q Consensus 56 vi~n~~vi~~~~~~~~~I~I~~G~I~~Vg~~~~~-~~~~~vID~~G~~vlPGlI 108 (535)
.|+|+++-.-+ .--+|.|+||+|.+|.+.... +.....+|++|..++|=+|
T Consensus 4 ~I~NarL~gr~--GL~~I~I~~G~i~~I~pq~~~~~~~~d~lDa~GgL~~p~~i 55 (103)
T d1ra0a1 4 TIINARLPGEE--GLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPLII 55 (103)
T ss_dssp EEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESEEE
T ss_pred eEEEEEeCCCC--cEEEEEecCCEEeeeecCCccccCCCcceeccCCcccCcEE
Confidence 58888885433 356899999999999986543 3457799999999999433
|
| >d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 4-oxalomesaconate hydratase LigJ species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.86 E-value=0.49 Score=43.19 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCC----CCcCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENG 238 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 238 (535)
++..+++.+.+...+..++++.....+ ...++...+..+.+.|.++|+++.+|....
T Consensus 122 ~~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~glpv~~H~~~~ 182 (342)
T d2gwga1 122 KTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS 182 (342)
T ss_dssp GGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred HHHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCCeEEEccCCC
Confidence 456677777766788999988654322 234577889999999999999999998654
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=92.69 E-value=0.038 Score=40.71 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=31.0
Q ss_pred CccccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEE
Q 009410 430 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 485 (535)
Q Consensus 430 ~GsI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V 485 (535)
...|++|+.||++++++||...+. ...++..|+.+|++.
T Consensus 56 ~PGL~~g~~~d~~~~~~~P~~di~-----------------~~~~v~~v~~~G~~~ 94 (96)
T d2qs8a1 56 LPSIESGKLADLIAVKGNPIEDIS-----------------VLENVDVVIKDGLLY 94 (96)
T ss_dssp EESCCTTSBCCEEEESSCTTTCGG-----------------GGGGEEEEEETTEEE
T ss_pred ccCccccCcccEEEEcCChhHHhH-----------------hhcCccEEEECCEEe
Confidence 356999999999999999664443 246789999999864
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=92.62 E-value=0.097 Score=34.49 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=27.4
Q ss_pred cccCCCCccEEEEcCCCceeeecCCccccCCCCCCCCeeEeeEEEEEEECCEEEEEC
Q 009410 432 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 488 (535)
Q Consensus 432 sI~~Gk~ADlvvld~~~~~~i~~~~~~~~~~~~p~~~~~~~~~v~~v~~~Gr~V~~~ 488 (535)
.+..|..||||++|.+ -+|.+++..|..||+.
T Consensus 44 ~f~dg~~a~~Vlld~~-------------------------l~v~~tv~~g~~v~~~ 75 (76)
T d1o12a1 44 RIAEGTRADLVLLDED-------------------------LNVVMTIKEGEVVFRS 75 (76)
T ss_dssp CCSTTSBCCEEEECTT-------------------------CCEEEEEETTEEEEEC
T ss_pred cccCCccccEEEEcCC-------------------------ceEEEEEeeccEEEec
Confidence 4788999999999954 2788999999999975
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=92.57 E-value=0.15 Score=36.98 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=50.8
Q ss_pred ccEEEEccEEEcCCCc--eeeeEEEeCCEEEEeeCCCCCCCCceEEecCCCEEeeccc---ccccccccc
Q 009410 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI---DPHTHLAME 117 (535)
Q Consensus 53 ~~~vi~n~~vi~~~~~--~~~~I~I~~G~I~~Vg~~~~~~~~~~vID~~G~~vlPGlI---D~H~H~~~~ 117 (535)
.+++|+.-..++.... ...++++++|.|.+|+.-. ..+++++...+++++|++- ++|.++...
T Consensus 2 ~d~~~~pk~yL~~~~g~li~a~l~v~~G~i~ai~~~t--~~~A~il~l~d~illG~I~~Gk~ADlvlvdg 69 (95)
T d3be7a1 2 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKIN--TKDATVISIPDLILIPQIKEGFDADIVGVIE 69 (95)
T ss_dssp CCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECCC--CSSSEEEEEEEEEEEESCCTTSBCCEEEESS
T ss_pred CceEecCcceeccccchhhhhhhhhhcCcHHHHHhhc--cChHHhcCCCCccccceeccCceeeEEEEcC
Confidence 5789999999987754 4789999999999998632 2369999999998888886 777777654
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=88.78 E-value=1.3 Score=40.09 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEeecCCCCcCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009410 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (535)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 237 (535)
++..+++.+.. +.|..++++...+.+ ...+...+..+.+.|.++|+++.+|...
T Consensus 125 ~~a~~el~r~~-~~g~~g~~l~~~~~~-~~~~d~~~~p~~~~~~e~~~pv~iH~~~ 178 (331)
T d2hbva1 125 DLACKEASRAV-AAGHLGIQIGNHLGD-KDLDDATLEAFLTHCANEDIPILVHPWD 178 (331)
T ss_dssp HHHHHHHHHHH-HHTCCCEEEESCBTT-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhHHHHhh-hhcceeeeecccccC-cccccchhhHHHHHHhccCCceEEecCC
Confidence 35567777776 678999988654443 4457788999999999999999999743
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=84.65 E-value=0.15 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=27.5
Q ss_pred eeeeEEEeCCEEEEeeCCCCC---CCCceEEecCCCEE
Q 009410 69 QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFV 103 (535)
Q Consensus 69 ~~~~I~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~v 103 (535)
+++-++|+||+|+++|+.... .++++++|.++++.
T Consensus 32 ~DG~llie~G~I~a~G~~~~l~~~~pga~v~d~~d~lg 69 (140)
T d2ooda1 32 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRII 69 (140)
T ss_dssp EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEE
T ss_pred cCcEEEEeCCEEEEecCHHHHhhcCCCceEEecCCceE
Confidence 489999999999999975322 34789999988743
|