Citrus Sinensis ID: 009426

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
ccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEccHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEEEEccccccccccccccccEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHcccEEEEEcccccHHHHHHHHccEEccccccccccccccccEEEEEEEEcEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEcccccEEEEcccHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHEEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHccEEEEEEccccEcccEEEEEEEEEccccccccccEccccEEEEEcccEEEEccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEcccccEccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mslrvlnpnaevLNKSAALHMNINAAKGLQDvlktnlgpkgtIKMLVggagdikltkDGNTLLKEMQIQNPTAIMIARTAVaqddisgdgttSTVIFIGELMKQSercidegmhprvlVDGFEIAKRATLQFLEkfktpvvmgdepdKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGlvldhgsrhpdmkrraencyiLTCNVSleyeksevnagffysnAEQREAMVAAERRQVDEKVRRIIELKNkvcsgndnnfvvinqkgidplsLDLLARAGIIALRRAKRRNMERLVLACGgeavnsvddltpgclgwaGLVYEHVLGEEKYTfvenvknphsctilikgpndhtiAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKtlaenagldTQDVIIALKgehdrgnivglnqhsgdpidpqmegifdnysVKRQIINSGPVIASQLLLVDEVIRAgrnmrkpt
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVaqddisgdGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLqflekfktpvvmgdepdkeILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHgsrhpdmkrraeNCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIElknkvcsgndnnFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIragrnmrkpt
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSldllaragiialrrakrrNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
****************AALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRH**MKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQH****IDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIR*********
MSLRVL**************MNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEV***********
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG*******
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MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMxxxxxxxxxxxxxxxxxxxxxVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIVGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
Q3MHL7531 T-complex protein 1 subun yes no 0.985 0.992 0.624 0.0
P80317531 T-complex protein 1 subun yes no 0.985 0.992 0.621 0.0
Q76NU3539 T-complex protein 1 subun yes no 0.962 0.955 0.646 0.0
P40227531 T-complex protein 1 subun yes no 0.985 0.992 0.617 0.0
Q5ZJ54530 T-complex protein 1 subun yes no 0.986 0.996 0.619 0.0
O77622531 T-complex protein 1 subun yes no 0.985 0.992 0.613 0.0
Q5RCD2531 T-complex protein 1 subun yes no 0.985 0.992 0.613 0.0
Q3T084531 T-complex protein 1 subun no no 0.985 0.992 0.596 0.0
O94515535 T-complex protein 1 subun yes no 0.985 0.985 0.598 0.0
Q92526530 T-complex protein 1 subun no no 0.947 0.956 0.598 0.0
>sp|Q3MHL7|TCPZ_BOVIN T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=1 SV=3 Back     alignment and function desciption
 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/533 (62%), Positives = 427/533 (80%), Gaps = 6/533 (1%)

Query: 2   SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNT 61
           +++ LNP AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN 
Sbjct: 3   AVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNV 62

Query: 62  LLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDG 121
           LL EMQIQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +G
Sbjct: 63  LLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEG 122

Query: 122 FEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLC 181
           FE AK   LQFLE+ K    +  E D+E L  VART+LRTK++  LAD LT+ VV+++L 
Sbjct: 123 FEAAKEKALQFLEQVK----VSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILA 178

Query: 182 IRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLE 241
           I+K +E IDLFMVE+M M+HK + DT L+ GLVLDHG+RHPDMK+R E+ YILTCNVSLE
Sbjct: 179 IKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLE 238

Query: 242 YEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGID 301
           YEK+EVN+GFFY +AE+RE +V AER+ ++++V++IIELK KVC  +D  FVVINQKGID
Sbjct: 239 YEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGID 298

Query: 302 PLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEE 361
           P SLD LA+ GIIALRRAKRRNMERL LACGG A+NS+DDL P CLG AGLVYE+ LGEE
Sbjct: 299 PFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLGHAGLVYEYTLGEE 358

Query: 362 KYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAA 421
           K+TF+E   NP S T+LIKGPN HT+ QIKDA+RDGLRAVKN I+D  VV GAGA EVA 
Sbjct: 359 KFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAM 418

Query: 422 RQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIV 480
            + LV + K +V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +V
Sbjct: 419 AEALV-KYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLV 477

Query: 481 GLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 533
           G++ ++G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG +  K
Sbjct: 478 GVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK 530
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Bos taurus (taxid: 9913)
>sp|P80317|TCPZ_MOUSE T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3 Back     alignment and function description
>sp|Q76NU3|TCPZ_DICDI T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1 Back     alignment and function description
>sp|P40227|TCPZ_HUMAN T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3 Back     alignment and function description
>sp|Q5ZJ54|TCPZ_CHICK T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3 Back     alignment and function description
>sp|O77622|TCPZ_RABIT T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3 Back     alignment and function description
>sp|Q5RCD2|TCPZ_PONAB T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3 Back     alignment and function description
>sp|Q3T084|TCPW_BOVIN T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3 Back     alignment and function description
>sp|O94515|TCPZ_SCHPO T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct6 PE=3 SV=1 Back     alignment and function description
>sp|Q92526|TCPW_HUMAN T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
225451999535 PREDICTED: T-complex protein 1 subunit z 0.998 0.998 0.949 0.0
302399067535 TCP domain class transcription factor [M 1.0 1.0 0.943 0.0
449447490535 PREDICTED: T-complex protein 1 subunit z 1.0 1.0 0.936 0.0
255551408535 chaperonin containing t-complex protein 0.998 0.998 0.936 0.0
356569084535 PREDICTED: T-complex protein 1 subunit z 1.0 1.0 0.936 0.0
356527473535 PREDICTED: T-complex protein 1 subunit z 1.0 1.0 0.932 0.0
90657661535 hypothetical protein [Cleome spinosa] 1.0 1.0 0.930 0.0
224127642535 predicted protein [Populus trichocarpa] 1.0 1.0 0.925 0.0
118486677535 unknown [Populus trichocarpa] 1.0 1.0 0.925 0.0
90657615555 hypothetical protein [Cleome spinosa] 1.0 0.963 0.902 0.0
>gi|225451999|ref|XP_002283510.1| PREDICTED: T-complex protein 1 subunit zeta [Vitis vinifera] gi|296087296|emb|CBI33670.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/534 (94%), Positives = 526/534 (98%)

Query: 1   MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGN 60
           MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGN
Sbjct: 1   MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGN 60

Query: 61  TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVD 120
           TLLKEMQIQNPTAIMIARTAVAQDD SGDGTTSTV+FIGELMKQSER IDEGMHPRVLVD
Sbjct: 61  TLLKEMQIQNPTAIMIARTAVAQDDTSGDGTTSTVLFIGELMKQSERYIDEGMHPRVLVD 120

Query: 121 GFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVL 180
           GFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYE++ADQLTDIVVNAVL
Sbjct: 121 GFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYEAMADQLTDIVVNAVL 180

Query: 181 CIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSL 240
           CIRKPEE IDLFMVE+MHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILT NVSL
Sbjct: 181 CIRKPEEGIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTSNVSL 240

Query: 241 EYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 300
           EY+KSE+NAGFFYS+AEQREAMVAAERRQVDE+V++IIELKNKVCSGNDNNFVVINQKGI
Sbjct: 241 EYDKSEINAGFFYSSAEQREAMVAAERRQVDERVKKIIELKNKVCSGNDNNFVVINQKGI 300

Query: 301 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGE 360
           DP SLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTP CLGWAGLVYEH+LGE
Sbjct: 301 DPPSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHILGE 360

Query: 361 EKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVA 420
           EKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLR+VKNT+EDE+VVLGAGAFEVA
Sbjct: 361 EKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTMEDESVVLGAGAFEVA 420

Query: 421 ARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIV 480
           ARQYLVNEVKKTV+GRAQLGVEAFADALLVVPKTLAEN+GLDTQDVIIAL GEHDRGN+V
Sbjct: 421 ARQYLVNEVKKTVQGRAQLGVEAFADALLVVPKTLAENSGLDTQDVIIALTGEHDRGNVV 480

Query: 481 GLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 534
           GLNQH+G+PIDP MEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP
Sbjct: 481 GLNQHTGEPIDPHMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKP 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302399067|gb|ADL36828.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449447490|ref|XP_004141501.1| PREDICTED: T-complex protein 1 subunit zeta-like [Cucumis sativus] gi|449481446|ref|XP_004156185.1| PREDICTED: T-complex protein 1 subunit zeta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255551408|ref|XP_002516750.1| chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative [Ricinus communis] gi|223544123|gb|EEF45648.1| chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356569084|ref|XP_003552736.1| PREDICTED: T-complex protein 1 subunit zeta-like [Glycine max] Back     alignment and taxonomy information
>gi|356527473|ref|XP_003532334.1| PREDICTED: T-complex protein 1 subunit zeta-like [Glycine max] Back     alignment and taxonomy information
>gi|90657661|gb|ABD96959.1| hypothetical protein [Cleome spinosa] Back     alignment and taxonomy information
>gi|224127642|ref|XP_002329328.1| predicted protein [Populus trichocarpa] gi|222870782|gb|EEF07913.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486677|gb|ABK95175.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|90657615|gb|ABD96914.1| hypothetical protein [Cleome spinosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2076924535 AT3G02530 [Arabidopsis thalian 1.0 1.0 0.882 8.7e-253
TAIR|locus:2146082535 AT5G16070 [Arabidopsis thalian 0.998 0.998 0.884 3.5e-249
ZFIN|ZDB-GENE-011018-2531 cct6a "chaperonin containing T 0.985 0.992 0.606 3.6e-169
UNIPROTKB|Q3MHS9531 Cct6a "Chaperonin subunit 6a ( 0.985 0.992 0.592 7.4e-169
UNIPROTKB|Q3MHL7531 CCT6A "T-complex protein 1 sub 0.985 0.992 0.596 9.4e-169
MGI|MGI:107943531 Cct6a "chaperonin containing T 0.985 0.992 0.594 9.4e-169
UNIPROTKB|F1RIU3531 CCT6A "Uncharacterized protein 0.985 0.992 0.594 1.2e-168
UNIPROTKB|P40227531 CCT6A "T-complex protein 1 sub 0.985 0.992 0.592 2e-168
UNIPROTKB|Q5ZJ54530 CCT6 "T-complex protein 1 subu 0.986 0.996 0.593 6.6e-168
DICTYBASE|DDB_G0277493539 cct6 "chaperonin containing TC 0.962 0.955 0.619 2.2e-167
TAIR|locus:2076924 AT3G02530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2434 (861.9 bits), Expect = 8.7e-253, P = 8.7e-253
 Identities = 472/535 (88%), Positives = 501/535 (93%)

Query:     1 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGN 60
             MS+RVLNPNAEVLNKSAALHM INAAKGLQDVLK+NLGPKGTIKMLVGG+GDIKLTKDGN
Sbjct:     1 MSVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGN 60

Query:    61 TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVD 120
             TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVD
Sbjct:    61 TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVD 120

Query:   121 GFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVL 180
             GFEIAKRATLQFL+ FKTPVVMGDEPDKEILKMVARTTLRTKLYE LADQLTDIVVN+VL
Sbjct:   121 GFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVL 180

Query:   181 CIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSL 240
             CIRKP+E IDLFMVE+MHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENC+ILTCNVSL
Sbjct:   181 CIRKPQEPIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSL 240

Query:   241 EYEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGI 300
             EYEKSE+NAGFFYSNAEQREAMV AERR VDE+V++IIELKNKVC+GNDN+FV++NQKGI
Sbjct:   241 EYEKSEINAGFFYSNAEQREAMVTAERRSVDERVQKIIELKNKVCAGNDNSFVILNQKGI 300

Query:   301 DPLSXXXXXXXXXXXXXXXXXXNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGE 360
             DP S                  NMERLVLACGGEAVNSVDDLTP CLGWAGLVYEHVLGE
Sbjct:   301 DPPSLDLLAREGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHVLGE 360

Query:   361 EKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVA 420
             EKYTFVE VKNPHSCTILIKGPNDHTIAQIKDAVRDGLR+VKNT+EDE VVLGAGAFEVA
Sbjct:   361 EKYTFVEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTLEDECVVLGAGAFEVA 420

Query:   421 ARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGNIV 480
             ARQ+L+NEVKKTV+GRAQLGVEAFA+ALLVVPKTLAENAGLDTQDVII+L  EHD+GNIV
Sbjct:   421 ARQHLINEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTSEHDKGNIV 480

Query:   481 GLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT 535
             GL+   G+P+DPQ+ GIFDNYSVKRQ+INSGPVIASQLLLVDEVIRAGRNMRKPT
Sbjct:   481 GLDLQDGEPVDPQLAGIFDNYSVKRQLINSGPVIASQLLLVDEVIRAGRNMRKPT 535
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0016020 "membrane" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
TAIR|locus:2146082 AT5G16070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-011018-2 cct6a "chaperonin containing TCP1, subunit 6A (zeta 1)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHS9 Cct6a "Chaperonin subunit 6a (Zeta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHL7 CCT6A "T-complex protein 1 subunit zeta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:107943 Cct6a "chaperonin containing Tcp1, subunit 6a (zeta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIU3 CCT6A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P40227 CCT6A "T-complex protein 1 subunit zeta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ54 CCT6 "T-complex protein 1 subunit zeta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277493 cct6 "chaperonin containing TCP1 zeta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T8THSB_SULSONo assigned EC number0.35710.93080.8989yesno
Q9V2T4THSB_SULACNo assigned EC number0.34410.94390.9132yesno
Q9HN70THSA_HALSANo assigned EC number0.33960.95700.9110yesno
P40227TCPZ_HUMANNo assigned EC number0.61720.98500.9924yesno
P46550TCPZ_CAEELNo assigned EC number0.60400.97940.9721yesno
O77622TCPZ_RABITNo assigned EC number0.61350.98500.9924yesno
Q76NU3TCPZ_DICDINo assigned EC number0.64670.96260.9554yesno
P48424THSA_THEACNo assigned EC number0.36060.92330.9064yesno
O30561THS1_HALVDNo assigned EC number0.360.95320.9107yesno
Q3MHL7TCPZ_BOVINNo assigned EC number0.62470.98500.9924yesno
Q9V2Q7THS_PYRABNo assigned EC number0.37110.92520.9yesno
P80317TCPZ_MOUSENo assigned EC number0.62100.98500.9924yesno
O26885THSB_METTHNo assigned EC number0.36040.91210.9070yesno
O57762THS_PYRHONo assigned EC number0.37150.92890.9052yesno
O94515TCPZ_SCHPONo assigned EC number0.59840.98500.9850yesno
O28821THSB_ARCFUNo assigned EC number0.37150.92890.9119yesno
Q5RCD2TCPZ_PONABNo assigned EC number0.61350.98500.9924yesno
Q9YDK6THSA_AERPENo assigned EC number0.36150.92890.8971yesno
Q52500THSB_PYRKONo assigned EC number0.36970.92140.9029yesno
P50016THS_METKANo assigned EC number0.37810.93640.9192yesno
Q58405THS_METJANo assigned EC number0.35470.92890.9169yesno
P39079TCPZ_YEASTNo assigned EC number0.54310.99810.9780yesno
Q5ZJ54TCPZ_CHICKNo assigned EC number0.61980.98690.9962yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.765
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.752
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.727
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
  ••••••0.699
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.668
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.663
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.636
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.625
GSVIVG00017910001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)
  ••    0.620
GSVIVG00023929001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (269 aa)
  ••    0.598

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 0.0
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-178
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-138
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-137
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-126
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-88
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-87
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 2e-80
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 5e-79
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-76
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-76
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-76
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 5e-76
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 2e-75
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 5e-75
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 4e-71
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-70
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-69
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 6e-69
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 3e-60
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 9e-58
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 3e-11
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 5e-10
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 5e-10
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-09
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 2e-09
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 3e-09
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-07
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 2e-07
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 4e-07
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 4e-06
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-05
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 2e-05
CHL00093529 CHL00093, groEL, chaperonin GroEL 4e-04
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.001
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.002
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.004
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.004
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information 
 Score =  917 bits (2371), Expect = 0.0
 Identities = 382/534 (71%), Positives = 454/534 (85%), Gaps = 5/534 (0%)

Query: 2   SLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNT 61
           S+++LNP AE L + AAL MNINAA+GLQDVLKTNLGPKGT+KMLV GAGDIKLTKDGN 
Sbjct: 1   SVQLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNV 60

Query: 62  LLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDG 121
           LL EMQIQ+PTA MIAR A AQD+I+GDGTTSTVI IGEL+KQ+ER I EG+HPR++ +G
Sbjct: 61  LLNEMQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQAERYILEGVHPRIITEG 120

Query: 122 FEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLC 181
           FEIA++  L+FL+KFK  V   DE D+E L  VART+LRTKL   LADQLT+IVV+AVL 
Sbjct: 121 FEIARKELLEFLDKFK--VKTEDEVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLA 178

Query: 182 IRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLE 241
           I+K  E IDLFMVE+M M+HK   DT L+ GLVLDHG+RHPDM RR +N YILTCNVSLE
Sbjct: 179 IKKDGEDIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLE 238

Query: 242 YEKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCS-GNDNNFVVINQKGI 300
           YEK+EVN+GFFYS+AEQRE +VAAER+ VD++V++IIELK KVC    D  FVVINQKGI
Sbjct: 239 YEKTEVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGI 298

Query: 301 DPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGE 360
           DP SLDLLA+ GI+ALRRAKRRNMERL LACGGEA+NSV+DLTP CLGWAGLVYE  +GE
Sbjct: 299 DPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETTIGE 358

Query: 361 EKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVA 420
           EKYTF+E VKNP SCTILIKGPNDHTIAQIKDAVRDGLRAVKN IED+ VV GAGAFE+A
Sbjct: 359 EKYTFIEEVKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIA 418

Query: 421 ARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRG-NI 479
           A ++L  E KK+V+G+A+LGVEAFA+ALLV+PKTLAEN+G D QD ++ L+ EHD G  +
Sbjct: 419 AYRHL-KENKKSVKGKAKLGVEAFANALLVIPKTLAENSGFDAQDTLVKLEDEHDEGGEV 477

Query: 480 VGLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMRK 533
           VG++ ++G+PIDP+++GI+DNY VK+Q+I S  VIASQLLLVDEV+RAGR+M K
Sbjct: 478 VGVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSMLK 531

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.82
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information 
Probab=100.00  E-value=8.9e-109  Score=882.85  Aligned_cols=527  Identities=72%  Similarity=1.104  Sum_probs=497.9

Q ss_pred             ccccCcchhhcchHHHHHHHHHHHHHHHHhhhhccCCCCCceeeecCCCCeEEecChHHHhhhccccChHHHHHHHHHHh
Q 009426            3 LRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA   82 (535)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~n~~a~~~l~~~v~~slGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~   82 (535)
                      ..+++++.++.+|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~   81 (531)
T TIGR02347         2 VKLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATA   81 (531)
T ss_pred             cccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHH
Confidence            34667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHhhccc
Q 009426           83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTK  162 (535)
Q Consensus        83 ~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~tsl~sk  162 (535)
                      |++++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++++.  +..+.+.|.++|+|++++|
T Consensus        82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~l~~ia~tsl~sK  159 (531)
T TIGR02347        82 QDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE--DEVDRELLLNVARTSLRTK  159 (531)
T ss_pred             hhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999997652  1237889999999999999


Q ss_pred             cccchHHHHHHHHHHhhhhhcCCccccCcccEEEEEecCCcccccEEEEEEEEeecCCCCCCcccccCceeEeecccccc
Q 009426          163 LYESLADQLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEY  242 (535)
Q Consensus       163 ~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~i~i~~i~g~~~~~s~li~Givl~~~~~~~~~~~~~~n~kIll~~~~Le~  242 (535)
                      +.+.+.++|++++++|+..+.+.+..+|+++|+++++.|++.++|++++|++|++++.+|.||++++||+|++++++|++
T Consensus       160 ~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~  239 (531)
T TIGR02347       160 LPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEY  239 (531)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCC
Confidence            99999999999999999999764335888899999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-CCCceEEEeccCCCHHHHHHHHHcCceEEEecCh
Q 009426          243 EKSEVNAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSG-NDNNFVVINQKGIDPLSLDLLARAGIIALRRAKR  321 (535)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~~~~~-~~~~~lIl~~~~i~~~al~~l~~~~I~~v~~v~~  321 (535)
                      .+++....+.++++++++.+++.|++++++++++|+++++.+|.. .+.+++|+++++|+|.+++||.++||++++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~  319 (531)
T TIGR02347       240 EKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKR  319 (531)
T ss_pred             CccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCH
Confidence            999999999999999999999999999999999999988554411 1224589999999999999999999999999999


Q ss_pred             hhHHHHHHHhCCEEecccCCCCCCCCcccceEEEEEECceEEEEEEccCCCCeeEEEecCCCHHHHHHHHHHHHhHHHHH
Q 009426          322 RNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAV  401 (535)
Q Consensus       322 ~~l~~la~~tGa~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~i~G~t~~~l~e~~~~l~dal~~~  401 (535)
                      ++|+|||++|||++++++++++++++|+|+.|++..+++++|++|+++++++.|||+|||+|+.+++|++|+++||++++
T Consensus       320 ~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~  399 (531)
T TIGR02347       320 RNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAV  399 (531)
T ss_pred             HHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCccccCCchhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC-CCee
Q 009426          402 KNTIEDEAVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDR-GNIV  480 (535)
Q Consensus       402 ~~~~~~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~~~~~~i~~l~~~~~~-~~~~  480 (535)
                      ++++++|++|||||++|++|+.+| ++++.+.++++++++++|++||+.||++|++|||+|+.+++.++++.|.. +.++
T Consensus       400 ~~~~~~~~vvpGGGa~E~~ls~~l-~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~  478 (531)
T TIGR02347       400 KNAIEDKCVVPGAGAFEIAAYCHL-KEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVV  478 (531)
T ss_pred             HHHhhCCcEEeCCCHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCce
Confidence            999999999999999999999999 88988889999999999999999999999999999999999999998854 3678


Q ss_pred             eEecCCCCccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHhhcCccCC
Q 009426          481 GLNQHSGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAGRNMR  532 (535)
Q Consensus       481 Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~~  532 (535)
                      |+|+.+|+++||++.|||||+.+|+++|++|+|+|++|||||++|.++|+.-
T Consensus       479 Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~~  530 (531)
T TIGR02347       479 GVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSML  530 (531)
T ss_pred             eeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccccC
Confidence            9999999999999999999999999999999999999999999999887653

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-157
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-76
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-75
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-75
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-74
1a6d_A545 Thermosome From T. Acidophilum Length = 545 1e-73
3izh_A513 Mm-Cpn D386a With Atp Length = 513 3e-68
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 4e-68
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 4e-67
3izi_A513 Mm-Cpn Rls With Atp Length = 513 6e-67
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 9e-65
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 9e-65
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 7e-64
1a6d_B543 Thermosome From T. Acidophilum Length = 543 1e-63
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-63
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 1e-60
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-57
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-54
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-51
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-49
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-48
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-47
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-47
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-46
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-45
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-44
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-41
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-39
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-33
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-12
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 2e-12
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 1e-10
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 3e-08
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 4e-08
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 4e-08
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 6e-08
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 7e-08
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 7e-08
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 7e-08
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 7e-08
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 7e-08
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 8e-08
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 8e-08
1oel_A547 Conformational Variability In The Refined Structure 3e-07
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 3e-07
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 3e-07
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 3e-07
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 3e-07
1ss8_A524 Groel Length = 524 3e-07
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 3e-07
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 3e-04
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure 
Iteration: 1

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/523 (60%), Positives = 403/523 (77%), Gaps = 8/523 (1%)
Query: 8   PNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQ 67
           P AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQ
Sbjct: 1   PKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQ 60
Query: 68  IQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKR 127
           IQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK 
Sbjct: 61  IQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKE 120
Query: 128 ATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEE 187
             LQFLE+ K    +  E D+E L  VART+LRTK++  LAD LT+ VV+++L I+K +E
Sbjct: 121 KALQFLEQVK----VSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDE 176
Query: 188 AIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEV 247
            IDLFMVE+M M+HK + DT L+ GLVLDHG+RHPDMK+R E+ YILTCNVSLEYEK+EV
Sbjct: 177 PIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV 236
Query: 248 NAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSXXX 307
           N+GFFY +AE+RE +V AER+ ++++V++IIELK KVC  +D  FVVINQKGIDP S   
Sbjct: 237 NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDA 296
Query: 308 XXXXXXXXXXXXXXXNMERLVLACGGEAVNSVDDLTPGC-LGWAGLVYEHVLGEEKYTFV 366
                          NMERL LACGG A+NS+DDL P C LG AG VYE+ LGEEK+TF+
Sbjct: 297 LAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFI 355
Query: 367 ENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLV 426
           E   NP S T+LIKGPN HT+ QIKDA+RDGLRAVKN I+D  VV GAGA EVA  + LV
Sbjct: 356 EKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALV 415
Query: 427 NEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEH-DRGNIVGLNQH 485
            + K +V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH + G +VG++ +
Sbjct: 416 -KYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLN 474
Query: 486 SGDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 528
           +G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG
Sbjct: 475 TGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG 517
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-167
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-154
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-153
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-153
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 1e-153
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 1e-150
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-149
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-148
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-147
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-147
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-146
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-146
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-144
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-143
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-143
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-139
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-136
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-79
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 2e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 6e-06
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 2e-05
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-05
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-05
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
 Score =  730 bits (1887), Expect = 0.0
 Identities = 324/522 (62%), Positives = 412/522 (78%), Gaps = 6/522 (1%)

Query: 8   PNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQ 67
           P AEV    AAL +NI+AA+GLQDVL+TNLGPKGT+KMLV GAGDIKLTKDGN LL EMQ
Sbjct: 1   PKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQ 60

Query: 68  IQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKR 127
           IQ+PTA +IA+ A AQDDI+GDGTTS V+ IGEL+KQ++  I EG+HPR++ +GFE AK 
Sbjct: 61  IQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKE 120

Query: 128 ATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEE 187
             LQFLE+ K       E D+E L  VART+LRTK++  LAD LT+ VV+++L I+K +E
Sbjct: 121 KALQFLEQVKVSK----EMDRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDE 176

Query: 188 AIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEV 247
            IDLFMVE+M M+HK + DT L+ GLVLDHG+RHPDMK+R E+ YILTCNVSLEYEK+EV
Sbjct: 177 PIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEV 236

Query: 248 NAGFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDL 307
           N+GFFY +AE+RE +V AER+ ++++V++IIELK KVC  +D  FVVINQKGIDP SLD 
Sbjct: 237 NSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDA 296

Query: 308 LARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPGCLGWAGLVYEHVLGEEKYTFVE 367
           LA+ GIIALRRAKRRNMERL LACGG A+NS+DDL P CL     VYE+ LGEEK+TF+E
Sbjct: 297 LAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIE 356

Query: 368 NVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGAFEVAARQYLVN 427
              NP S T+LIKGPN HT+ QIKDA+RDGLRAVKN I+D  VV GAGA EVA  + L  
Sbjct: 357 KCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEAL-V 415

Query: 428 EVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDRGN-IVGLNQHS 486
           + K +V+GRAQLGV+AFADALL++PK LA+N+G D Q+ ++ ++ EH     +VG++ ++
Sbjct: 416 KYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNT 475

Query: 487 GDPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG 528
           G+P+     GI+DNY VK+Q+++S  VIA+ +LLVDE++RAG
Sbjct: 476 GEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG 517
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.25
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.23
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.21
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=2.8e-115  Score=929.76  Aligned_cols=513  Identities=64%  Similarity=1.011  Sum_probs=496.7

Q ss_pred             hhhcchHHHHHHHHHHHHHHHHhhhhccCCCCCceeeecCCCCeEEecChHHHhhhccccChHHHHHHHHHHhhhcccCC
Q 009426           10 AEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGD   89 (535)
Q Consensus        10 ~~~~~~~~~~~~n~~a~~~l~~~v~~slGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD   89 (535)
                      ++..+|.+|+.+|+.||++|++++++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus         3 ~~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GD   82 (517)
T 3iyg_Z            3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGD   82 (517)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHhhccccccchHH
Q 009426           90 GTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLAD  169 (535)
Q Consensus        90 Gttt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~  169 (535)
                      ||||++||+++||+++.+++.+|+||+.|++||++|++.++++|++++++++   . +++.|.++|+|++++|+.+.+.+
T Consensus        83 GTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~---~-~~~~L~~va~tsl~sKi~~~~~d  158 (517)
T 3iyg_Z           83 GTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE---M-DRETLIDVARTSLRTKVHAELAD  158 (517)
T ss_pred             CceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCC---C-CHHHHHHHHHHHhccccchhHHH
Confidence            9999999999999999999999999999999999999999999999999885   2 78899999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCccccCcccEEEEEecCCcccccEEEEEEEEeecCCCCCCcccccCceeEeeccccccccccccc
Q 009426          170 QLTDIVVNAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNA  249 (535)
Q Consensus       170 ~ls~l~~~a~~~v~~~~~~~~~~~i~i~~i~g~~~~~s~li~Givl~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~  249 (535)
                      +|+++++||++++.+++..+|+++|+|+|++|++..||++++|++|++++.||+||++++||+|++++++|+++++++++
T Consensus       159 ~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~  238 (517)
T 3iyg_Z          159 VLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNS  238 (517)
T ss_pred             HHHHHHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccccCCeEEEecccccccccccce
Confidence            99999999999998755578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCceEEEeccCCCHHHHHHHHHcCceEEEecChhhHHHHHH
Q 009426          250 GFFYSNAEQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVL  329 (535)
Q Consensus       250 ~~~~~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~~~~~~~~~~lIl~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~la~  329 (535)
                      ++.++++++++.+++.|++++++++++|++++.++|...++|++||++++|++.+++||.++||++++++++++|+|||+
T Consensus       239 ~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~  318 (517)
T 3iyg_Z          239 GFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTL  318 (517)
T ss_pred             eEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHH
Confidence            99999999999999999999999999999999888865678899999999999999999999999999999999999999


Q ss_pred             HhCCEEecccCCCCCCC-CcccceEEEEEECceEEEEEEccCCCCeeEEEecCCCHHHHHHHHHHHHhHHHHHHHHhhcC
Q 009426          330 ACGGEAVNSVDDLTPGC-LGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDE  408 (535)
Q Consensus       330 ~tGa~ii~~~~~l~~~~-lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~i~G~t~~~l~e~~~~l~dal~~~~~~~~~~  408 (535)
                      +|||+++++++++++++ +|+|+ |++..+|+++|+||++|++++.|||+|||+|+.+++|.||+++||++++|+++++|
T Consensus       319 ~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~  397 (517)
T 3iyg_Z          319 ACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDG  397 (517)
T ss_pred             HhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCchhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999 99999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCchhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-CCCeeeEecCCC
Q 009426          409 AVVLGAGAFEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHD-RGNIVGLNQHSG  487 (535)
Q Consensus       409 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~~~~~~i~~l~~~~~-~~~~~Gid~~~g  487 (535)
                      ++|||||++|++++.+| ++++.+.++++|+++++|++||+.+|++|++|||+|+.+++.+|++.|. .+.++|||+.+|
T Consensus       398 ~iVpGGGa~e~~~s~~L-~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g  476 (517)
T 3iyg_Z          398 CVVPGAGAVEVAMAEAL-VKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTG  476 (517)
T ss_pred             eEecCccHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCC
Confidence            99999999999999999 8999889999999999999999999999999999999999999999995 357899999999


Q ss_pred             CccccccCCcccchHHHHHHHHHHHHHHHHHHhhhHHhhcC
Q 009426          488 DPIDPQMEGIFDNYSVKRQIINSGPVIASQLLLVDEVIRAG  528 (535)
Q Consensus       488 ~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~  528 (535)
                      ++.||++.|||||+.||+++|++|+|+|++|||||++|.++
T Consensus       477 ~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~  517 (517)
T 3iyg_Z          477 EPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRAG  517 (517)
T ss_pred             cccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999874
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 2e-41
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 3e-40
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 1e-39
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 2e-38
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 5e-30
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 1e-20
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-29
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-11
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 5e-29
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 4e-19
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-16
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-16
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 6e-16
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 1e-15
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 4e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-12
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-06
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  144 bits (364), Expect = 2e-41
 Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 206 DTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNAEQREAMVAA 265
           D+ ++ G++++    HP M+R  +N  I+  + SLEY+K E       +  E    ++  
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60

Query: 266 ERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNME 325
           E   + +    II+LK  V          I +KGI  L+   L RA + A+RR ++ +  
Sbjct: 61  EEEYIHQLCEDIIQLKPDVV---------ITEKGISDLAQHYLMRANVTAIRRVRKTDNN 111

Query: 326 RLVLACGGEAVNSVDDLTPGCLGW-AGLVYEHVLGEEKYTFVENVKNPHSCTILIKG 381
           R+  ACG   V+  ++L    +G  AGL+    +G+E +TF+ + K+P +CTIL++G
Sbjct: 112 RIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.96
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.92
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.6
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.57
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.48
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.27
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.24
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.22
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.21
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 96.21
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 87.61
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 85.75
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 85.14
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=1.6e-52  Score=401.39  Aligned_cols=241  Identities=36%  Similarity=0.616  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCceeeecCCCCeEEecChHHHhhhccccChHHHHHHHHHHhhhcccCCChhHHHH
Q 009426           17 AALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVI   96 (535)
Q Consensus        17 ~~~~~n~~a~~~l~~~v~~slGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vv   96 (535)
                      ++++.|+.||..+++++++||||+|++|||+++.|++++||||+||++++.++||+++++++++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHhhccccccchHHHHHHHHH
Q 009426           97 FIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTKLYESLADQLTDIVV  176 (535)
Q Consensus        97 La~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ls~l~~  176 (535)
                      |+++||+++.+++..|+||..|++||+.|++.+++.|++++.++.                                   
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~-----------------------------------  126 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIA-----------------------------------  126 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECE-----------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccc-----------------------------------
Confidence            999999999999999999999999999999988876655432221                                   


Q ss_pred             HhhhhhcCCccccCcccEEEEEecCCcccccEEEEEEEEeecCCCCCCcccccCceeEeeccccccccccccceEEEeCH
Q 009426          177 NAVLCIRKPEEAIDLFMVELMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCYILTCNVSLEYEKSEVNAGFFYSNA  256 (535)
Q Consensus       177 ~a~~~v~~~~~~~~~~~i~i~~i~g~~~~~s~li~Givl~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~~~~~~~  256 (535)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCceEEEeccCCCHHHHHHHHHcCceEEEecChhhHHHHHHHhCCEEe
Q 009426          257 EQREAMVAAERRQVDEKVRRIIELKNKVCSGNDNNFVVINQKGIDPLSLDLLARAGIIALRRAKRRNMERLVLACGGEAV  336 (535)
Q Consensus       257 ~~~~~~~~~E~~~~~~~v~~I~~~~~~~~~~~~~~~lIl~~~~i~~~al~~l~~~~I~~v~~v~~~~l~~la~~tGa~ii  336 (535)
                                                          +.                                          
T Consensus       127 ------------------------------------~~------------------------------------------  128 (243)
T d1a6db1         127 ------------------------------------YA------------------------------------------  128 (243)
T ss_dssp             ------------------------------------EE------------------------------------------
T ss_pred             ------------------------------------cc------------------------------------------
Confidence                                                00                                          


Q ss_pred             cccCCCCCCCCcccceEEEEEECceEEEEEEccCCCCeeEEEecCCCHHHHHHHHHHHHhHHHHHHHHhhcCccccCCch
Q 009426          337 NSVDDLTPGCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRAVKNTIEDEAVVLGAGA  416 (535)
Q Consensus       337 ~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~TI~i~G~t~~~l~e~~~~l~dal~~~~~~~~~~~vvpGGG~  416 (535)
                                                                                                 ||||+
T Consensus       129 ---------------------------------------------------------------------------~ggGa  133 (243)
T d1a6db1         129 ---------------------------------------------------------------------------AGGGA  133 (243)
T ss_dssp             ---------------------------------------------------------------------------ETTTH
T ss_pred             ---------------------------------------------------------------------------cCCCc
Confidence                                                                                       16999


Q ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC-CCeeeEecCCCCccccccC
Q 009426          417 FEVAARQYLVNEVKKTVEGRAQLGVEAFADALLVVPKTLAENAGLDTQDVIIALKGEHDR-GNIVGLNQHSGDPIDPQME  495 (535)
Q Consensus       417 ~E~~l~~~L~~~~~~~~~~~~~~~i~~~a~aL~~ip~~L~~NaG~~~~~~i~~l~~~~~~-~~~~Gid~~~g~~~d~~~~  495 (535)
                      +|+.++..| .++++++++++|+++++|++||+.||++|++|+|+|+.+++.+++..|.. +.++|+|+.+|++.||.+.
T Consensus       134 ~e~~~a~~l-~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~  212 (243)
T d1a6db1         134 TAAEIAFRL-RSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKN  212 (243)
T ss_dssp             HHHHHHHHH-HHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTT
T ss_pred             hhHHHHHHH-hhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhc
Confidence            999999999 99999999999999999999999999999999999999999999999954 5789999999999999999


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHHhhhHHhh
Q 009426          496 GIFDNYSVKRQIINSGPVIASQLLLVDEVIR  526 (535)
Q Consensus       496 gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (535)
                      |||||+.+|+++|+.|+|+|++|||||+||.
T Consensus       213 gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         213 GVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             TCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             ccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999873
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure