Citrus Sinensis ID: 009436

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccHHccccccHHHHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHccccccccccEEEEEccEEEccccHHHHccccccccccccHHHHHHHHHHccccccccHHHHccccccccccccccHHccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccEEEccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHcccccHHHHcccc
cccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHcccccccccccccccccEEEEEEcccHHHHEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccHHHHcccccccEEccHHccHcHHcHHHHccccccHHHHHcccccHHHHHcccEEEcHHHHHHHcHHHHHHHHHHHcccccEEEccccccHEEHEcccccccccccEEEcccccccccHHHHcccEEEEEccccccHHHHcccccccHHHHHcccccHHHHHcccc
mrrraaeyrrpvRRRLSCWIWALLGLFSIAGLVLFIVQHnhhedrsnplalekSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAmrgepitldeaepIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLAserrnsprlvdnnlyhfcifsdnvpatsvvvnstitnadhpkqMVFHIVTNGVTYGAMQAWflnndfkgstieVQNIEEFSWLNASYAPIVKQLLNADsraiyfgeyqdlrvepklrnpryLSLLNHLrfyipeiypqlekivfldddvvvqkdltplfsldlhgnvnGAVETCLEAFHRYYKYlnfsnpiisskfdpqacgwafgmNAFDLIAWRKANVTARYHYWQEQNADRTlwklgtlppallafygltepldrrwhvlglgydmnidnrlIESAAVIHFNGNMKPWLKLAISRYkpiwdryvnhshpyvqdcets
mrrraaeyrrpvrrrLSCWIWALLGLFSIAGLVLFIVQHNHHEDrsnplaleksartEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQdlaserrnsprlvDNNLYHFCIFSDNVPATSVVVNSTitnadhpkqMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEyqdlrvepklrNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPlfsldlhgnvNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHshpyvqdcets
MrrraaeyrrpvrrrLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS
***********VRRRLSCWIWALLGLFSIAGLVLFIVQHN*********************RKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLA******PRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYV******
************RRRLSCWIWALLGLFSIAGLVLF****************************************SFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLL********************SSLSSLIFTAQDAHYDIATTIMTMKSHIQA*********VQSTLFGQLLAESLPKSLHCLKVKLSVDWV********************NNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCET*
***********VRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS
*****AEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHN******************************ILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
Q949Q1537 Probable galacturonosyltr yes no 1.0 0.996 0.791 0.0
Q9SKT6536 Probable galacturonosyltr no no 0.986 0.985 0.551 1e-170
Q9LE59673 Polygalacturonate 4-alpha no no 0.904 0.719 0.463 1e-132
Q93ZX7616 Probable galacturonosyltr no no 0.854 0.741 0.473 1e-130
Q0WQD2680 Probable galacturonosyltr no no 0.859 0.676 0.483 1e-129
Q9LSG3559 Galacturonosyltransferase no no 0.743 0.711 0.487 1e-116
Q9ZPZ1528 Putative galacturonosyltr no no 0.846 0.857 0.418 1e-105
Q9FWA4561 Probable galacturonosyltr no no 0.923 0.880 0.401 4e-99
Q9FH36535 Probable galacturonosyltr no no 0.742 0.742 0.387 7e-90
Q0WV13533 Probable galacturonosyltr no no 0.736 0.739 0.384 3e-88
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function desciption
 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/537 (79%), Positives = 476/537 (88%), Gaps = 2/537 (0%)

Query: 1   MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQV 60
           MRR   ++RR  RRRLS WIW LLG FS+AGLVLFIVQH HH+   + L LE+  RTE V
Sbjct: 1   MRRWPVDHRRRGRRRLSSWIWFLLGSFSVAGLVLFIVQHYHHQQDPSQLLLERDTRTEMV 60

Query: 61  ERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSK 120
               LNFT+E+ SA+SFSRQLAEQ+ LAKAYV IAKEHNN  LAWELS KIRSCQLLLSK
Sbjct: 61  SPPHLNFTEEVTSASSFSRQLAEQMTLAKAYVFIAKEHNNLHLAWELSSKIRSCQLLLSK 120

Query: 121 AAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQST 180
           AAMRG+PI+ DEA+PII+ LS+LI+ AQDAHYDIATT+MTMKSHIQALEERANAATVQ+T
Sbjct: 121 AAMRGQPISFDEAKPIITGLSALIYKAQDAHYDIATTMMTMKSHIQALEERANAATVQTT 180

Query: 181 LFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVP 240
           +FGQL+AE+LPKSLHCL +KL+ DWV      +LA E RNSPRLVDNNLYHFCIFSDNV 
Sbjct: 181 IFGQLVAEALPKSLHCLTIKLTSDWVTEPSRHELADENRNSPRLVDNNLYHFCIFSDNVI 240

Query: 241 ATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNA 300
           ATSVVVNST++NADHPKQ+VFHIVTN V+Y AMQAWFL+NDFKGS IE++++EEFSWLNA
Sbjct: 241 ATSVVVNSTVSNADHPKQLVFHIVTNRVSYKAMQAWFLSNDFKGSAIEIRSVEEFSWLNA 300

Query: 301 SYAPIVKQLLNADSRAIYFGEY--QDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIV 358
           SY+P+VKQLL+ D+RA YFGE   QD   EPK+RNP+YLSLLNHLRFYIPEIYPQLEKIV
Sbjct: 301 SYSPVVKQLLDTDARAYYFGEQTSQDTISEPKVRNPKYLSLLNHLRFYIPEIYPQLEKIV 360

Query: 359 FLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGW 418
           FLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNP+ISSKFDPQACGW
Sbjct: 361 FLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGW 420

Query: 419 AFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVL 478
           AFGMN FDLIAWR ANVTARYHYWQ+QN +RTLWKLGTLPP LL+FYGLTEPLDRRWHVL
Sbjct: 421 AFGMNVFDLIAWRNANVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVL 480

Query: 479 GLGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535
           GLGYD+NIDNRLIE+AAVIH+NGNMKPWLKLAI RYKP W +++N SHPY+QDC T+
Sbjct: 481 GLGYDVNIDNRLIETAAVIHYNGNMKPWLKLAIGRYKPFWLKFLNSSHPYLQDCVTA 537
May be involved in pectin and/or xylans biosynthesis in cell walls (By similarity). Involved in seed mucilage extrusion.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 Back     alignment and function description
>sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH36|GAUTC_ARATH Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1 Back     alignment and function description
>sp|Q0WV13|GAUTD_ARATH Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
255547123535 Glycosyltransferase QUASIMODO1, putative 1.0 1.0 0.841 0.0
224124222531 glycosyltransferase [Populus trichocarpa 0.992 1.0 0.829 0.0
225456536535 PREDICTED: probable galacturonosyltransf 1.0 1.0 0.824 0.0
356562646536 PREDICTED: probable galacturonosyltransf 0.998 0.996 0.808 0.0
356511558536 PREDICTED: probable galacturonosyltransf 0.998 0.996 0.798 0.0
449440889535 PREDICTED: probable galacturonosyltransf 1.0 1.0 0.807 0.0
240254105537 alpha-1,4-galacturonosyltransferase [Ara 1.0 0.996 0.791 0.0
356516881535 PREDICTED: probable galacturonosyltransf 0.992 0.992 0.803 0.0
356516879534 PREDICTED: probable galacturonosyltransf 0.992 0.994 0.800 0.0
356508477534 PREDICTED: probable galacturonosyltransf 0.992 0.994 0.798 0.0
>gi|255547123|ref|XP_002514619.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223546223|gb|EEF47725.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/535 (84%), Positives = 486/535 (90%)

Query: 1   MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQV 60
           MRRRAA+ RR VRRRLS WIWALLG+F IAGLVLF+  H+H ED  N    E  AR E V
Sbjct: 1   MRRRAADGRRSVRRRLSQWIWALLGMFLIAGLVLFVFHHHHDEDPVNQPLQENHARPEPV 60

Query: 61  ERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSK 120
            R+ LNFTKEILSATSFSRQLAEQI LAKAYVIIAKEHNN  LAWELSK+IRSCQLLLSK
Sbjct: 61  NREGLNFTKEILSATSFSRQLAEQIALAKAYVIIAKEHNNLHLAWELSKQIRSCQLLLSK 120

Query: 121 AAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQST 180
           AAM GEPITL+EAEP+ISSLSSLIF AQDAHYD+ATTIMTMKSHIQALEERANAATVQS 
Sbjct: 121 AAMTGEPITLEEAEPLISSLSSLIFKAQDAHYDVATTIMTMKSHIQALEERANAATVQSA 180

Query: 181 LFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVP 240
           +FGQL AE+LPKSLHCL VKL+ DW++   +QDLA E+RNSPRL+DNNLYH+CIFSDNV 
Sbjct: 181 VFGQLAAEALPKSLHCLIVKLTTDWLKKPLLQDLAEEKRNSPRLMDNNLYHYCIFSDNVL 240

Query: 241 ATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNA 300
           ATSVVVNS I+NADHP Q+VFHIVTNGV+YGAMQAWFL++DFKG+TIEVQN++EFSWLNA
Sbjct: 241 ATSVVVNSAISNADHPTQLVFHIVTNGVSYGAMQAWFLSDDFKGATIEVQNVKEFSWLNA 300

Query: 301 SYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFL 360
           SYAP+VKQLL  DSR+ YF  YQD++VEPKLRNP+YLSLLNHLRFYIPEIYPQLEKIVFL
Sbjct: 301 SYAPVVKQLLAEDSRSYYFSGYQDMKVEPKLRNPKYLSLLNHLRFYIPEIYPQLEKIVFL 360

Query: 361 DDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAF 420
           DDDVVVQKDLT LFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAF
Sbjct: 361 DDDVVVQKDLTQLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAF 420

Query: 421 GMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGL 480
           GMN FDLIAWRKANVTA+YHYWQEQN DRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGL
Sbjct: 421 GMNVFDLIAWRKANVTAQYHYWQEQNVDRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGL 480

Query: 481 GYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535
           GYD NIDNRLIESAAV+HFNGNMKPWLKLAI RYKP+W+RY+N S PY QDC TS
Sbjct: 481 GYDTNIDNRLIESAAVVHFNGNMKPWLKLAIGRYKPLWERYINQSRPYYQDCVTS 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224124222|ref|XP_002330135.1| glycosyltransferase [Populus trichocarpa] gi|222871269|gb|EEF08400.1| glycosyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456536|ref|XP_002262858.1| PREDICTED: probable galacturonosyltransferase 11-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356562646|ref|XP_003549580.1| PREDICTED: probable galacturonosyltransferase 11-like [Glycine max] Back     alignment and taxonomy information
>gi|356511558|ref|XP_003524492.1| PREDICTED: probable galacturonosyltransferase 11-like [Glycine max] Back     alignment and taxonomy information
>gi|449440889|ref|XP_004138216.1| PREDICTED: probable galacturonosyltransferase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240254105|ref|NP_564057.4| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75164846|sp|Q949Q1.1|GAUTB_ARATH RecName: Full=Probable galacturonosyltransferase 11 gi|15293067|gb|AAK93644.1| unknown protein [Arabidopsis thaliana] gi|17064736|gb|AAL32522.1| Unknown protein [Arabidopsis thaliana] gi|332191610|gb|AEE29731.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356516881|ref|XP_003527121.1| PREDICTED: probable galacturonosyltransferase 11-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356516879|ref|XP_003527120.1| PREDICTED: probable galacturonosyltransferase 11-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356508477|ref|XP_003522983.1| PREDICTED: probable galacturonosyltransferase 11-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.971 0.968 0.798 3.5e-233
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.943 0.942 0.566 1.4e-160
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.904 0.719 0.467 1.9e-122
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.912 0.792 0.454 7.4e-121
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.923 0.726 0.465 3.2e-120
TAIR|locus:2090210559 QUA1 "QUASIMODO 1" [Arabidopsi 0.743 0.711 0.487 1.3e-107
TAIR|locus:2039934528 GAUT2 "galacturonosyltransfera 0.614 0.623 0.394 5.8e-105
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.742 0.707 0.465 2e-102
TAIR|locus:504955915610 LGT5 "los glycosyltransferase 0.420 0.368 0.473 7.3e-84
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.375 0.377 0.514 3.8e-62
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2249 (796.7 bits), Expect = 3.5e-233, P = 3.5e-233
 Identities = 417/522 (79%), Positives = 466/522 (89%)

Query:    16 LSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSAT 75
             LS WIW LLG FS+AGLVLFIVQH HH+   + L LE+  RTE V    LNFT+E+ SA+
Sbjct:    16 LSSWIWFLLGSFSVAGLVLFIVQHYHHQQDPSQLLLERDTRTEMVSPPHLNFTEEVTSAS 75

Query:    76 SFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEP 135
             SFSRQLAEQ+ LAKAYV IAKEHNN  LAWELS KIRSCQLLLSKAAMRG+PI+ DEA+P
Sbjct:    76 SFSRQLAEQMTLAKAYVFIAKEHNNLHLAWELSSKIRSCQLLLSKAAMRGQPISFDEAKP 135

Query:   136 IISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQSTLFGQLLAESLPKSLH 195
             II+ LS+LI+ AQDAHYDIATT+MTMKSHIQALEERANAATVQ+T+FGQL+AE+LPKSLH
Sbjct:   136 IITGLSALIYKAQDAHYDIATTMMTMKSHIQALEERANAATVQTTIFGQLVAEALPKSLH 195

Query:   196 CLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVPATSVVVNSTITNADH 255
             CL +KL+ DWV      +LA E RNSPRLVDNNLYHFCIFSDNV ATSVVVNST++NADH
Sbjct:   196 CLTIKLTSDWVTEPSRHELADENRNSPRLVDNNLYHFCIFSDNVIATSVVVNSTVSNADH 255

Query:   256 PKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSR 315
             PKQ+VFHIVTN V+Y AMQAWFL+NDFKGS IE++++EEFSWLNASY+P+VKQLL+ D+R
Sbjct:   256 PKQLVFHIVTNRVSYKAMQAWFLSNDFKGSAIEIRSVEEFSWLNASYSPVVKQLLDTDAR 315

Query:   316 AIYFGEY--QDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPL 373
             A YFGE   QD   EPK+RNP+YLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPL
Sbjct:   316 AYYFGEQTSQDTISEPKVRNPKYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPL 375

Query:   374 FSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKA 433
             FSLDLHGNVNGAVETCLEAFHRYYKYLNFSNP+ISSKFDPQACGWAFGMN FDLIAWR A
Sbjct:   376 FSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGWAFGMNVFDLIAWRNA 435

Query:   434 NVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRLIES 493
             NVTARYHYWQ+QN +RTLWKLGTLPP LL+FYGLTEPLDRRWHVLGLGYD+NIDNRLIE+
Sbjct:   436 NVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDVNIDNRLIET 495

Query:   494 AAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535
             AAVIH+NGNMKPWLKLAI RYKP W +++N SHPY+QDC T+
Sbjct:   496 AAVIHYNGNMKPWLKLAIGRYKPFWLKFLNSSHPYLQDCVTA 537
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q949Q1GAUTB_ARATH2, ., 4, ., 1, ., -0.79141.00.9962yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01290051
glycosyltransferase (EC-2.4.1.43) (531 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2235.1
hypothetical protein (287 aa)
     •  0.899
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
     •  0.899
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
     •  0.899
gw1.IV.576.1
pectinesterase family protein (EC-3.1.1.11) (315 aa)
     •  0.899
grail3.0035002801
hypothetical protein (431 aa)
     •  0.899
grail3.0033029301
hypothetical protein (435 aa)
     •  0.899
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
     •  0.899
fgenesh4_pg.C_LG_XIII000035
hypothetical protein (339 aa)
     •  0.899
eugene3.00880019
hypothetical protein (457 aa)
     •  0.899
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 0.0
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 1e-176
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 1e-175
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-162
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 1e-133
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 1e-119
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 1e-119
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 1e-112
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 1e-105
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 3e-96
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 1e-62
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 9e-16
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 2e-11
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 7e-11
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information 
 Score = 1026 bits (2654), Expect = 0.0
 Identities = 400/536 (74%), Positives = 460/536 (85%), Gaps = 3/536 (0%)

Query: 1   MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQV 60
           MRRR A++RRPVRRRLS WIW LLG FS+ GLVLF+  H H E    P   E++ R E+V
Sbjct: 1   MRRRPADFRRPVRRRLSQWIWWLLGGFSVLGLVLFV--HKHSEIEPRPPLSERNYRKEEV 58

Query: 61  ERKVLNFTKEILSATSFSRQLAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSK 120
             + LNFT+E+LSATSFSRQLA+QI LAKAYV+IAKEHNN +LAWELS +IR+CQLLLSK
Sbjct: 59  NHEGLNFTEEMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSK 118

Query: 121 AAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMTMKSHIQALEERANAATVQST 180
           AA RGEPIT++EAEPII  L++LI+ AQD HYD ATTIMT+K+HIQALEERANAATVQST
Sbjct: 119 AATRGEPITVEEAEPIIRDLAALIYQAQDLHYDSATTIMTLKAHIQALEERANAATVQST 178

Query: 181 LFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVP 240
            FGQL AE+LPKSL+CL V+L+ +W ++  +Q  A E+RNSPRLVDNNLYHFC+FSDN+ 
Sbjct: 179 KFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLYHFCVFSDNIL 238

Query: 241 ATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNA 300
           ATSVVVNST++NA HP Q+VFH+VT+ V YGAMQAWF  NDFKG T+EVQ IEEFSWLNA
Sbjct: 239 ATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNA 298

Query: 301 SYAPIVKQLLNADSRAIYFGEYQ-DLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVF 359
           SY P++KQL ++D+++ YF   Q D + E K RNP+YLS+LNHLRFYIPEIYP LEK+VF
Sbjct: 299 SYVPVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVF 358

Query: 360 LDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSKFDPQACGWA 419
           LDDDVVVQKDLTPLFS+DLHGNVNGAVETCLE FHRY+KYLNFS+P+ISS FDP ACGWA
Sbjct: 359 LDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWA 418

Query: 420 FGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLG 479
           FGMN FDL+AWRKANVTA YHYWQEQN DRTLWKLGTLPP LL FYGLTEPLDRRWHVLG
Sbjct: 419 FGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHVLG 478

Query: 480 LGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS 535
           LGYD NID RLIESAAV+HFNGNMKPWLKLAI RYKP+W+RYVN+SHPY+Q C   
Sbjct: 479 LGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH 534

Length = 534
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.97
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.97
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.92
PLN00176333 galactinol synthase 99.91
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.71
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.27
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 97.89
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 94.03
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 94.03
PF06637442 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th 88.5
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 82.89
COG4575104 ElaB Uncharacterized conserved protein [Function u 82.06
PLN03181453 glycosyltransferase; Provisional 80.09
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-152  Score=1215.28  Aligned_cols=533  Identities=75%  Similarity=1.235  Sum_probs=517.3

Q ss_pred             CCCcccccccccchhhhhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchhhccchhhhhhhccccccccccChhhHHHH
Q 009436            1 MRRRAAEYRRPVRRRLSCWIWALLGLFSIAGLVLFIVQHNHHEDRSNPLALEKSARTEQVERKVLNFTKEILSATSFSRQ   80 (535)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |||||+++|||+|||+++|||+++|+|+++||++|+  |+++++.+.+|+.+++++.+.+..+|+|+|+|++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (534)
T PLN02742          1 MRRRPADFRRPVRRRLSQWIWWLLGGFSVLGLVLFV--HKHSEIEPRPPLSERNYRKEEVNHEGLNFTEEMLSATSFSRQ   78 (534)
T ss_pred             CCCchhhcccchhcchhhhHHHHHHHHHHHHHHHHH--hccCCCCCCCCCccccccccccccccccchhhhcChHHHHHH
Confidence            899999999999999999999999999999999999  666788899999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchHHHHHHHHHHHHHhcccccchHHHHHH
Q 009436           81 LAEQIILAKAYVIIAKEHNNHRLAWELSKKIRSCQLLLSKAAMRGEPITLDEAEPIISSLSSLIFTAQDAHYDIATTIMT  160 (535)
Q Consensus        81 ~~d~~~~a~~y~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k  160 (535)
                      |||||||||||++|||++||++|++||+++|||+||+||+|++|++++++++++++|++|+++|++||+++|||+++++|
T Consensus        79 l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~~~~d~~~~~~k  158 (534)
T PLN02742         79 LADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQDLHYDSATTIMT  158 (534)
T ss_pred             HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999777999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHhHhhhccccCcccchhhhHhhHHHHhCchhhchhcccCCCCCCcCCCceeEEEEeCCCc
Q 009436          161 MKSHIQALEERANAATVQSTLFGQLLAESLPKSLHCLKVKLSVDWVRSKHIQDLASERRNSPRLVDNNLYHFCIFSDNVP  240 (535)
Q Consensus       161 l~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~~l~d~~~ihiv~~sDnvl  240 (535)
                      ||||++++|||+++|++|++|++||||+|+|||||||+||||+|||++++++++.++++++++|+||+++|||+|||||+
T Consensus       159 lr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvl  238 (534)
T PLN02742        159 LKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLYHFCVFSDNIL  238 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCcceEEEEeccch
Confidence            99999999999999999999999999999999999999999999999999987777778999999999999999999999


Q ss_pred             chHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHHhhhccCccceecc
Q 009436          241 ATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVKQLLNADSRAIYFG  320 (535)
Q Consensus       241 aasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~~l~~~~~~~~yf~  320 (535)
                      |+|||||||+.|+++|+++|||||||+.++.+|++||..|++++++|+|+++++|+|++.+|+||++|+++++++.|||+
T Consensus       239 AasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~  318 (534)
T PLN02742        239 ATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFS  318 (534)
T ss_pred             hhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccc-cCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeehhhhhhhHhhhhh
Q 009436          321 EYQDL-RVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKY  399 (535)
Q Consensus       321 ~~~~~-~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~dc~~~f~r~~~~  399 (535)
                      ..... ..+.++|+|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||+..|+++.+|
T Consensus       319 ~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~y  398 (534)
T PLN02742        319 GSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKY  398 (534)
T ss_pred             cccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhh
Confidence            76633 36778999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             ccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhccCeeeccccccccc
Q 009436          400 LNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLDRRWHVLG  479 (535)
Q Consensus       400 ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~~i~~Ld~~WN~~~  479 (535)
                      +||++|.++++|+++.||||+|||||||++||++++|+.++.|++.+.+..+|++|+||+++++|+|++.+||.+||+.|
T Consensus       399 LnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLaF~g~~~~LD~rWNv~g  478 (534)
T PLN02742        399 LNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHVLG  478 (534)
T ss_pred             hcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHHHcCcceecChhheecc
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             cCCCCcccccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCchhhccCC
Q 009436          480 LGYDMNIDNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYVQDCETS  535 (535)
Q Consensus       480 ~gy~~~i~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl~~cn~~  535 (535)
                      +||+++++...+++|+||||+|++|||.+.++++|+++|++|+++++||+++||||
T Consensus       479 LG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni~  534 (534)
T PLN02742        479 LGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNFH  534 (534)
T ss_pred             cccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCCC
Confidence            99988887788999999999999999999999999999999999999999999997

>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>COG4575 ElaB Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 5e-04
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 333 NPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEA 392
           N R++S+  + R  + E     +K+++LD DV+V+  LTPL+  DL  N  GA   C++ 
Sbjct: 75  NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDL 131
Query: 393 FHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLW 452
           F    +       +   ++   A     G+   +L  WR+ ++      W EQ  D   +
Sbjct: 132 FVERQEGYKQKIGMADGEYYFNA-----GVLLINLKKWRRHDIFKMSCEWVEQYKDVMQY 186
Query: 453 KLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDNRL---------------IESAAVI 497
           +   +   L  F G     + R++ +   Y   + NR                +   AV 
Sbjct: 187 QDEDILNGL--FKGGVCYANSRFNFMPTNYAF-MANRFASRHTDPLYRDRTNTVMPVAVS 243
Query: 498 HFNGNMKPW 506
           H+ G  KPW
Sbjct: 244 HYCGPAKPW 252

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 3e-60
3tzt_A276 Glycosyl transferase family 8; structural genomics 9e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 1e-04
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  200 bits (510), Expect = 3e-60
 Identities = 52/315 (16%), Positives = 100/315 (31%), Gaps = 59/315 (18%)

Query: 231 HFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIE 288
                +D+       V   S         ++ FH++  G++     A   N    G  I 
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAH-PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 289 VQNIEEFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIP 348
             ++    +                                   N R++S+  + R  + 
Sbjct: 61  FIDVNPEDFAGFPL------------------------------NIRHISITTYARLKLG 90

Query: 349 EIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV-ETCLEAFHRYYKYLNFSNPII 407
           E     +K+++LD DV+V+  LTPL+  DL  N  GA  +  +E    Y + +  ++   
Sbjct: 91  EYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG-- 148

Query: 408 SSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGL 467
                     +  G+   +L  WR+ ++      W EQ  D   ++   +   L  F G 
Sbjct: 149 -------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGG 199

Query: 468 TEPLDRRWHVLGLGYDMNID--------------NRLIESAAVIHFNGNMKPWLKLAISR 513
               + R++ +   Y    +                 +   AV H+ G  KPW +   + 
Sbjct: 200 VCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW 259

Query: 514 YKPIWDRYVNHSHPY 528
               +          
Sbjct: 260 GAERFTELAGSLTTV 274
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.93
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.9
1o7q_A289 N-acetyllactosaminide alpha-1,3- galactosyltransfe 81.31
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=372.28  Aligned_cols=259  Identities=17%  Similarity=0.225  Sum_probs=189.4

Q ss_pred             CceeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhh
Q 009436          228 NLYHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPI  305 (535)
Q Consensus       228 ~~ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pv  305 (535)
                      -.+|||+++|+  +.+++|+|+|++.|+++ ++++|||++++++.+..+.+.......+..|++..+++ ++        
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~--------   73 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL--------   73 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH--------
Confidence            35999999997  67999999999999986 57999999999998776655443333456677665542 10        


Q ss_pred             HHhhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccC-CCeEEEEecCeeeccCChhhhcCCCCCCcce
Q 009436          306 VKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ-LEKIVFLDDDVVVQKDLTPLFSLDLHGNVNG  384 (535)
Q Consensus       306 l~~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~-ldKVLYLD~DvVV~~DLseLw~iDL~g~~ia  384 (535)
                                   |.       ..+  ..+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+.+|
T Consensus        74 -------------~~-------~~~--~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~a  131 (276)
T 3tzt_A           74 -------------FS-------FAK--VTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILA  131 (276)
T ss_dssp             --------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEE
T ss_pred             -------------Hh-------cCc--cccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEE
Confidence                         00       000  124678999999999999995 9999999999999999999999999999999


Q ss_pred             eehhhhhh-hHhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhh
Q 009436          385 AVETCLEA-FHRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLA  463 (535)
Q Consensus       385 AV~dc~~~-f~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~  463 (535)
                      ||+||... +.+...         ..+++...|||||||||+||++||+.++++++++|++.+.....  .+||+++|.+
T Consensus       132 av~d~~~~~~~~~~~---------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~~  200 (276)
T 3tzt_A          132 AASHTGKTDMANNVN---------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNAM  200 (276)
T ss_dssp             EEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHH
T ss_pred             EEEecccchHHHHHH---------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHHH
Confidence            99999743 111111         11344446999999999999999999999999999987664433  4789999999


Q ss_pred             hccCeeeccc-cccccccCCC-Ccc---c----ccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcCCCch
Q 009436          464 FYGLTEPLDR-RWHVLGLGYD-MNI---D----NRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHSHPYV  529 (535)
Q Consensus       464 F~~~i~~Ld~-~WN~~~~gy~-~~i---~----~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~~pfl  529 (535)
                      |.|++++||. +||++...+. +..   .    .+..++|+||||+|+.|||...+.++|+++||+|.+..++++
T Consensus       201 f~~~~~~Lp~~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          201 YGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             HGGGEEEEEHHHHSEETTCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             HhCCEEECCchheeeecccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            9999999998 9999873210 000   1    124568999999999999999999999999999999887765
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-31
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 6e-07
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  121 bits (304), Expect = 1e-31
 Identities = 54/305 (17%), Positives = 101/305 (33%), Gaps = 58/305 (19%)

Query: 235 FSDN-VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIE 293
             DN      V   S +  A    ++ FH++  G++     A   N    G  I   ++ 
Sbjct: 7   ADDNYAAYLCVAAKS-VEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65

Query: 294 EFSWLNASYAPIVKQLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQ 353
              +                                   N R++S+  + R  + E    
Sbjct: 66  PEDFAGFPL------------------------------NIRHISITTYARLKLGEYIAD 95

Query: 354 LEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAV-ETCLEAFHRYYKYLNFSNPIISSKFD 412
            +K+++LD DV+V+  LTPL+  DL  N  GA  +  +E    Y + +  ++        
Sbjct: 96  CDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG------- 148

Query: 413 PQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYGLTEPLD 472
                +  G+   +L  WR+ ++      W EQ  D   ++   +   L  F G     +
Sbjct: 149 --EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVCYAN 204

Query: 473 RRWHVLGLGYDMNID--------------NRLIESAAVIHFNGNMKPWLKLAISRYKPIW 518
            R++ +   Y    +                 +   AV H+ G  KPW +   +     +
Sbjct: 205 SRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERF 264

Query: 519 DRYVN 523
                
Sbjct: 265 TELAG 269
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.92
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 91.33
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 87.03
d1fo8a_343 N-acetylglucosaminyltransferase I {Rabbit (Oryctol 86.78
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=6.9e-42  Score=341.05  Aligned_cols=254  Identities=20%  Similarity=0.274  Sum_probs=200.9

Q ss_pred             eeEEEEeCC--CcchHHHHHHHHHhCCCCCcEEEEEEeCCCChHHHHHhhhhcCCCCCeeEEeecccchhccccchhhHH
Q 009436          230 YHFCIFSDN--VPATSVVVNSTITNADHPKQMVFHIVTNGVTYGAMQAWFLNNDFKGSTIEVQNIEEFSWLNASYAPIVK  307 (535)
Q Consensus       230 ihiv~~sDn--vlaasVvI~Siv~Ns~~p~~l~FhIvtD~l~~~~mk~wf~~n~~~~a~I~v~~i~~f~wl~~~y~pvl~  307 (535)
                      ||||+++|+  +.+++|+|+|++.|+++ .+++|||++++++.+..+.+.......+..|.+..++.-+           
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~-----------   68 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED-----------   68 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGG-----------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchH-----------
Confidence            699999996  67999999999998776 4699999999999988776655443345666665543210           


Q ss_pred             hhhccCccceeccccccccCCCCCCCCCcchhhhHHHHhhcccccCCCeEEEEecCeeeccCChhhhcCCCCCCcceeeh
Q 009436          308 QLLNADSRAIYFGEYQDLRVEPKLRNPRYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVE  387 (535)
Q Consensus       308 ~l~~~~~~~~yf~~~~~~~~~l~~rn~~~lS~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~  387 (535)
                                 |.       ..+. ..+++|.++|+||++|++||+++||||||+|+||.+||++||++|++++.+|||.
T Consensus        69 -----------~~-------~~~~-~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~  129 (282)
T d1ga8a_          69 -----------FA-------GFPL-NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI  129 (282)
T ss_dssp             -----------GT-------TSCC-CCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEE
T ss_pred             -----------hc-------cccc-cccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeeh
Confidence                       00       0000 1357889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhh-HhhhhhccCCCcccccCCCCCCCceeeeeeeeechHHHHHhHHHHHHHHHHHcCCccccccCCCCHHHhhhcc
Q 009436          388 TCLEAF-HRYYKYLNFSNPIISSKFDPQACGWAFGMNAFDLIAWRKANVTARYHYWQEQNADRTLWKLGTLPPALLAFYG  466 (535)
Q Consensus       388 dc~~~f-~r~~~~ln~s~p~i~~~f~~~~~yfNSGVmLinL~~WR~~~it~~~~~~~~~n~d~~l~~~gdl~~~nl~F~~  466 (535)
                      |+.... ..+...++         +.++.+||||||||+|+++||++++++++.++++.+.....  .+||+++|.+|.|
T Consensus       130 d~~~~~~~~~~~~~~---------~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~~f~~  198 (282)
T d1ga8a_         130 DLFVERQEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQ--YQDQDILNGLFKG  198 (282)
T ss_dssp             CHHHHTSTTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCS--STHHHHHHHHHTT
T ss_pred             hhhhhhhhhhHHHhC---------CCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCcc--cCchhHHHHHhcC
Confidence            976421 11222222         44568999999999999999999999999999987654433  3688999999999


Q ss_pred             CeeeccccccccccCCCCcc--------------cccccCCCeEEeccCCCCCcccCccCCCHHHHHHHHhcC
Q 009436          467 LTEPLDRRWHVLGLGYDMNI--------------DNRLIESAAVIHFNGNMKPWLKLAISRYKPIWDRYVNHS  525 (535)
Q Consensus       467 ~i~~Ld~~WN~~~~gy~~~i--------------~~~~i~~a~IIHy~G~~KPW~~~~~~~y~~~W~~Y~~~~  525 (535)
                      ++..||.+||++..+|....              ..+...+++||||+|+.|||...+.+.+.+.|++|++..
T Consensus       199 ~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~  271 (282)
T d1ga8a_         199 GVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL  271 (282)
T ss_dssp             SEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred             CEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence            99999999999865432110              023457899999999999999998889999999998764
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure