Citrus Sinensis ID: 009437

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----

MDTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQSS

cccccHHHHHHHHHHHcccccccccEEEccccccccccccccEEEEEEEEEcccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEEEccccccHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcEEEEEEccccccccEEEEEEEccccccccccEEEEcccccccccccEEccccccccHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHcHHHHccccccccccccccccccc

ccHHHHHHHEEHHHHHcHHHHcccccEcccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccccEEEEEEEHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc

MDTKRVINIFIFILVsspclasagdivhqdnnapkrpgcdnnfvlvkvptwvdggedteyvgvgarfgrtleakekdasqnrlvladppdccskpknkltgEAILVhrggcsftakanFAEEANASAILIINNKTELFKMVCesnetdvdiripaimlpqdagANLEKLIKNNSVVSvqlysprrpvvdVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKdgsdefsnmegvnsngfvdINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFqhagdsfikvpffgavsyLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARgdrsgedgipmllkiprlfdpwggysvigfgdiilPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLmdghgqpallYIVPFTLGTFLTlgkkrgelktlwtrgeperacphiqlqss

MDTKRVINIFIFILVSSPCLASAGDIVHQDNNapkrpgcdnNFVLVKVPtwvdggedteYVGVGARFGRtleakekdasqnrlvladppdccskpkNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKtlwtrgeperacphiqlqss

****RVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTL*******************CC****NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDG**EFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWTR***************

***KRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLL**GSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWTR***************

*DTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELD*******************GFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWTRG**************

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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		535	2.2.26 [Sep-21-2011]
Q0WMJ8		540	Signal peptide peptidase-	yes	no	0.979	0.970	0.752	0.0
Q8W469		540	Signal peptide peptidase-	no	no	0.943	0.935	0.75	0.0
Q0DWA9		545	Signal peptide peptidase-	yes	no	0.949	0.932	0.722	0.0
Q5Z413		542	Signal peptide peptidase-	no	no	0.940	0.928	0.712	0.0
Q53P98		534	Signal peptide peptidase-	no	no	0.908	0.910	0.517	1e-147
Q4V3B8		540	Signal peptide peptidase-	no	no	0.949	0.940	0.470	1e-128
Q9MA44		536	Signal peptide peptidase-	no	no	0.936	0.934	0.444	1e-120
Q5N808		523	Signal peptide peptidase-	no	no	0.906	0.927	0.439	1e-112
Q5PQL3		577	Signal peptide peptidase-	yes	no	0.745	0.691	0.346	2e-54
Q3TD49		578	Signal peptide peptidase-	yes	no	0.749	0.693	0.343	3e-53

>sp\|Q0WMJ8\|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1	Back alignment and function desciption

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/525 (75%), Positives = 452/525 (86%), Gaps = 1/525 (0%)

Query: 10  FIF-ILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFG 68
           F+F +L+ S     AGDIVH D++ P+RPGC+NNFVLVKVPT V+G E TEYVGVGARFG
Sbjct: 12  FVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFG 71

Query: 69  RTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAI 128
            TLE+KEK A+  +L +ADPPDCCS PKNKLTGE ILVHRG CSFT K   AE A ASAI
Sbjct: 72  PTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAI 131

Query: 129 LIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVV 188
           LIINN T+LFKMVCE  E  +DI IP +MLP DAG +LE ++K+N++V++QLYSP+RP V
Sbjct: 132 LIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAV 191

Query: 189 DVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINM 248
           DVAEVFLWLMAVGTILCASYWSAWT RE AIE DKLLKDGSDE   +   +S G V++ +
Sbjct: 192 DVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTV 251

Query: 249 ASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGD 308
            SA+ FVV+ASCFL+MLYKLMSFWFIEVLVVLFCIGGVEGLQTC+V+LLSCFRWF+  G+
Sbjct: 252 ISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGE 311

Query: 309 SFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVP 368
           S++KVPF GAVSYLTLA+CPFCIAF+V WAV R+ S+AWIGQDILGI+L+ITVLQIVRVP
Sbjct: 312 SYVKVPFLGAVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVP 371

Query: 369 NLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG 428
           NLKVG VLLSCAF+YDIFWVFVSKWWF ESVMIVVARGDRSGEDGIPMLLKIPR+FDPWG
Sbjct: 372 NLKVGFVLLSCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWG 431

Query: 429 GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGH 488
           GYS+IGFGDIILPGL+V F+LRYDWL  K  +SGYF+  M+AYGLGLLITY+ALNLMDGH
Sbjct: 432 GYSIIGFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGH 491

Query: 489 GQPALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQ 533
           GQPALLYIVPF LGT   LG KRG+LKTLWT GEP+R CPH++LQ
Sbjct: 492 GQPALLYIVPFILGTLFVLGHKRGDLKTLWTTGEPDRPCPHVRLQ 536

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp\|Q8W469\|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q0DWA9\|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1	Back alignment and function description

>sp\|Q5Z413\|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q53P98\|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q4V3B8\|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q9MA44\|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q5N808\|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q5PQL3\|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1	Back alignment and function description

>sp\|Q3TD49\|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		535
356568398		539	PREDICTED: signal peptide peptidase-like	0.964	0.957	0.829	0.0
356531995		539	PREDICTED: signal peptide peptidase-like	0.977	0.970	0.816	0.0
225454252		534	PREDICTED: signal peptide peptidase-like	0.992	0.994	0.815	0.0
356520402		541	PREDICTED: signal peptide peptidase-like	0.971	0.961	0.812	0.0
255541612		538	Minor histocompatibility antigen H13, pu	0.996	0.990	0.804	0.0
356506212		542	PREDICTED: signal peptide peptidase-like	0.977	0.964	0.802	0.0
449441460		539	PREDICTED: signal peptide peptidase-like	0.958	0.951	0.820	0.0
16118854		538	growth-on protein GRO11 [Euphorbia esula	1.0	0.994	0.794	0.0
357514571		573	Signal peptide peptidase-like 2B [Medica	0.977	0.912	0.758	0.0
224064037		528	predicted protein [Populus trichocarpa]	0.983	0.996	0.798	0.0

>gi\|356568398\|ref\|XP_003552398.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/516 (82%), Positives = 469/516 (90%)

Query: 20  LASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDAS 79
           L+ AGDIVH D+ AP+RPGCDNNFVLVKVPTW+DG E  EYVGVGARFG TLE+KEK A+
Sbjct: 21  LSLAGDIVHPDSIAPRRPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKHAN 80

Query: 80  QNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFK 139
             R+ +ADPPDCCSKPKNKLTGE ILVHRG CSFT KAN AEEA ASAILIIN +TELFK
Sbjct: 81  HTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINYRTELFK 140

Query: 140 MVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMA 199
           MVCE+NETDVDI IPA+MLPQDAG NL+  I NNSVVSVQLYSP RP+VDVAEVFLWLMA
Sbjct: 141 MVCEANETDVDIGIPAVMLPQDAGENLKNHILNNSVVSVQLYSPLRPLVDVAEVFLWLMA 200

Query: 200 VGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIAS 259
           VGTILCASYWSAWTARE+AIE +KLLKD SDE+ N E   S+ +V+I+ A+A+SFVVIAS
Sbjct: 201 VGTILCASYWSAWTARESAIEQEKLLKDASDEYINAENAGSSAYVEISTAAAISFVVIAS 260

Query: 260 CFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAV 319
           CFLVMLYKLM++WF+EVLVVLFCIGGVEGLQTC+VALLSCF+WFQHA  +F+KVPFFGAV
Sbjct: 261 CFLVMLYKLMAYWFVEVLVVLFCIGGVEGLQTCLVALLSCFKWFQHAAQTFVKVPFFGAV 320

Query: 320 SYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSC 379
           SYLT+AV PFCI F+V+W VYRR+SFAWIGQDILGI L+ITVLQIVR+PNLKVGTVLLSC
Sbjct: 321 SYLTVAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSC 380

Query: 380 AFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSVIGFGDII 439
           AFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPR+FDPWGGYS+IGFGDII
Sbjct: 381 AFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGDII 440

Query: 440 LPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPF 499
           LPGL+VAFSLRYDWL KKN R GYF+WAMTAYGLGLLITYVALNLMDGHGQPALLYIVPF
Sbjct: 441 LPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPF 500

Query: 500 TLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQSS 535
           TLGTFL+LGKKRGELK LWTRGEP+  CPHIQ   S
Sbjct: 501 TLGTFLSLGKKRGELKVLWTRGEPKIPCPHIQENQS 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356531995\|ref\|XP_003534560.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|225454252\|ref\|XP_002274726.1\| PREDICTED: signal peptide peptidase-like 2B [Vitis vinifera] gi\|297745304\|emb\|CBI40384.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356520402\|ref\|XP_003528851.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|255541612\|ref\|XP_002511870.1\| Minor histocompatibility antigen H13, putative [Ricinus communis] gi\|223549050\|gb\|EEF50539.1\| Minor histocompatibility antigen H13, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356506212\|ref\|XP_003521881.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|449441460\|ref\|XP_004138500.1\| PREDICTED: signal peptide peptidase-like 4-like [Cucumis sativus] gi\|449516199\|ref\|XP_004165135.1\| PREDICTED: signal peptide peptidase-like 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|16118854\|gb\|AAL14628.1\|AF417575_1 growth-on protein GRO11 [Euphorbia esula]	Back alignment and taxonomy information

>gi\|357514571\|ref\|XP_003627574.1\| Signal peptide peptidase-like 2B [Medicago truncatula] gi\|355521596\|gb\|AET02050.1\| Signal peptide peptidase-like 2B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224064037\|ref\|XP_002301360.1\| predicted protein [Populus trichocarpa] gi\|222843086\|gb\|EEE80633.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		535
TAIR\|locus:2198155		540	SPPL4 "SIGNAL PEPTIDE PEPTIDAS	0.979	0.970	0.752	1.4e-222
TAIR\|locus:2026684		540	SPPL2 "SIGNAL PEPTIDE PEPTIDAS	0.990	0.981	0.719	1e-212
TAIR\|locus:2040971		540	SPPL3 "SIGNAL PEPTIDE PEPTIDAS	0.958	0.95	0.470	2.6e-125
TAIR\|locus:2198733		536	SPPL5 "SIGNAL PEPTIDE PEPTIDAS	0.927	0.925	0.451	1.9e-115
UNIPROTKB\|F1Q1B4		580	SPPL2B "Uncharacterized protei	0.768	0.708	0.345	6.8e-56
UNIPROTKB\|J9P0Q5		650	SPPL2B "Uncharacterized protei	0.768	0.632	0.345	6.8e-56
UNIPROTKB\|Q8TCT7		592	SPPL2B "Signal peptide peptida	0.747	0.675	0.358	2.9e-55
UNIPROTKB\|F1S8G9		585	LOC100515648 "Uncharacterized	0.773	0.707	0.342	3.7e-55
RGD\|1308556		577	Sppl2b "signal peptide peptida	0.751	0.696	0.349	3.7e-55
UNIPROTKB\|Q5PQL3		577	Sppl2b "Signal peptide peptida	0.751	0.696	0.349	3.7e-55

TAIR\|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2149 (761.5 bits), Expect = 1.4e-222, P = 1.4e-222
 Identities = 395/525 (75%), Positives = 452/525 (86%)

Query:    10 FIF-ILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFG 68
             F+F +L+ S     AGDIVH D++ P+RPGC+NNFVLVKVPT V+G E TEYVGVGARFG
Sbjct:    12 FVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFG 71

Query:    69 RTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAI 128
              TLE+KEK A+  +L +ADPPDCCS PKNKLTGE ILVHRG CSFT K   AE A ASAI
Sbjct:    72 PTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAI 131

Query:   129 LIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVV 188
             LIINN T+LFKMVCE  E  +DI IP +MLP DAG +LE ++K+N++V++QLYSP+RP V
Sbjct:   132 LIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAV 191

Query:   189 DVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINM 248
             DVAEVFLWLMAVGTILCASYWSAWT RE AIE DKLLKDGSDE   +   +S G V++ +
Sbjct:   192 DVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTV 251

Query:   249 ASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGD 308
              SA+ FVV+ASCFL+MLYKLMSFWFIEVLVVLFCIGGVEGLQTC+V+LLSCFRWF+  G+
Sbjct:   252 ISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGE 311

Query:   309 SFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQIVRVP 368
             S++KVPF GAVSYLTLA+CPFCIAF+V WAV R+ S+AWIGQDILGI+L+ITVLQIVRVP
Sbjct:   312 SYVKVPFLGAVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVP 371

Query:   369 NLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRLFDPWG 428
             NLKVG VLLSCAF+YDIFWVFVSKWWF ESVMIVVARGDRSGEDGIPMLLKIPR+FDPWG
Sbjct:   372 NLKVGFVLLSCAFMYDIFWVFVSKWWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWG 431

Query:   429 GYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGH 488
             GYS+IGFGDIILPGL+V F+LRYDWL  K  +SGYF+  M+AYGLGLLITY+ALNLMDGH
Sbjct:   432 GYSIIGFGDIILPGLLVTFALRYDWLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGH 491

Query:   489 GQPALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQ 533
             GQPALLYIVPF LGT   LG KRG+LKTLWT GEP+R CPH++LQ
Sbjct:   492 GQPALLYIVPFILGTLFVLGHKRGDLKTLWTTGEPDRPCPHVRLQ 536

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR\|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1308556 Sppl2b "signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5PQL3 Sppl2b "Signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0DWA9	SIPL4_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7221	0.9495	0.9321	yes	no
Q5Z413	SIPL5_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7128	0.9401	0.9280	no	no
Q8W469	SIPL2_ARATH	3, ., 4, ., 2, 3, ., -	0.75	0.9439	0.9351	no	no
Q0WMJ8	SIPL4_ARATH	3, ., 4, ., 2, 3, ., -	0.7523	0.9794	0.9703	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140311	annotation not avaliable (536 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		535
pfam04258		291	pfam04258, Peptidase_A22B, Signal peptide peptidas	1e-111
smart00730		249	smart00730, PSN, Presenilin, signal peptide peptid	3e-71
cd02132		139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	1e-60
cd04818		118	cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas	7e-14
cd00538		126	cd00538, PA, PA: Protease-associated (PA) domain	3e-13
cd02127		118	cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-	9e-12
cd02126		126	cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as	1e-11
pfam02225		96	pfam02225, PA, PA domain	2e-11
cd02122		138	cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a	3e-09
cd02125		127	cd02125, PA_VSR, PA_VSR: Protease-associated (PA)	5e-09
cd02123		153	cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a	2e-08
cd04813		117	cd04813, PA_1, PA_1: Protease-associated (PA) doma	3e-06
cd02133		143	cd02133, PA_C5a_like, PA_C5a_like: Protease-associ	3e-06
cd02124		129	cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso	6e-05
cd04816		122	cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-	1e-04
cd02129		120	cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as	4e-04

>gnl\|CDD\|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase	Back alignment and domain information

 Score =  332 bits (854), Expect = e-111
 Identities = 128/293 (43%), Positives = 162/293 (55%), Gaps = 17/293 (5%)

Query: 240 SNGFVDINMASAVSFVVIASCFLVMLYKLMSFWF------IEVLVVLFCIGGVEGLQ--- 290
                 I+   A+ F + ASC L+ LY             + VL   FCI G   L    
Sbjct: 3   KEETGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLI 62

Query: 291 -TCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWAVYRRISFAWIG 349
               +  LS    ++            G  +Y  L     CI F+V W V R+    WI 
Sbjct: 63  LPPCIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEH--WIL 120

Query: 350 QDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRS 409
           QDILGIAL I V++I+R+PNLKVGT+LLS  F YDIFWVF+S + F  SVM+ VA G   
Sbjct: 121 QDILGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFD 180

Query: 410 GEDGIPMLLKIPRLFD---PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVW 466
             + +PM L  PRL D    WG +S++G GDI++PGL++AF LR+D    K+    YF+ 
Sbjct: 181 AAEKLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKS-SRTYFIS 239

Query: 467 AMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELKTLWT 519
            M AYGLGLLIT+VALNL     QPALLY+VP TLGT L +   RGELK LW 
Sbjct: 240 TMIAYGLGLLITFVALNLFK-AAQPALLYLVPCTLGTLLLVALWRGELKKLWN 291

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl\|CDD\|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family	Back alignment and domain information

>gnl\|CDD\|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>gnl\|CDD\|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>gnl\|CDD\|238300 cd00538, PA, PA: Protease-associated (PA) domain	Back alignment and domain information

>gnl\|CDD\|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>gnl\|CDD\|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>gnl\|CDD\|216938 pfam02225, PA, PA domain	Back alignment and domain information

>gnl\|CDD\|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>gnl\|CDD\|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>gnl\|CDD\|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>gnl\|CDD\|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>gnl\|CDD\|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>gnl\|CDD\|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>gnl\|CDD\|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>gnl\|CDD\|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		535
KOG2442		541	consensus Uncharacterized conserved protein, conta	100.0
KOG2443		362	consensus Uncharacterized conserved protein [Funct	100.0
PF04258		298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730		249	PSN Presenilin, signal peptide peptidase, family.	100.0
cd02132		139	PA_GO-like PA_GO-like: Protease-associated domain	99.96
cd02129		120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.89
cd02126		126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.88
cd02127		118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.86
cd02125		127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.86
cd02123		153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	99.85
cd02122		138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.84
cd04818		118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.8
cd04813		117	PA_1 PA_1: Protease-associated (PA) domain subgrou	99.79
cd04816		122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.76
cd02130		122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.73
cd02124		129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.68
cd04817		139	PA_VapT_like PA_VapT_like: Protease-associated dom	99.67
PF06550		283	DUF1119: Protein of unknown function (DUF1119); In	99.63
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.63
KOG3920		193	consensus Uncharacterized conserved protein, conta	99.55
PF02225		101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.51
cd00538		126	PA PA: Protease-associated (PA) domain. The PA dom	99.5
cd02133		143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.39
cd04819		127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.36
COG3389		277	Uncharacterized protein conserved in archaea [Func	99.35
cd04815		134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	99.23
cd02120		126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.13
cd02128		183	PA_TfR PA_TfR: Protease-associated domain containi	98.81
cd04822		151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	98.32
cd02121		220	PA_GCPII_like PA_GCPII_like: Protease-associated d	98.26
cd04814		142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	98.21
cd04820		137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	98.16
cd02131		153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	97.64
cd04821		157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	94.21
PF01080		403	Presenilin: Presenilin Alzheimer disease; InterPro	93.15
KOG2736		406	consensus Presenilin [Signal transduction mechanis	91.64

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.2e-131  Score=1028.06  Aligned_cols=511  Identities=52%  Similarity=0.885  Sum_probs=486.4

Q ss_pred             ccccCCCCCccCCCCCCCCCCCCCeEEEEeeeeecCCCcceEEeeecCCCCccccccCCceeEEEEecCCCCCCCCCCCC
Q 009437           19 CLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNK   98 (535)
Q Consensus        19 ~~~~~~d~~~~d~~~~~~p~c~n~f~lvkv~~wv~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~gC~~~~~~   98 (535)
                      ....++|..|+|+..|+.|||+|+||++|+++|+||++..++.+..++||..++...+.+...++..++|.|.|+++.+.
T Consensus        14 ~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k   93 (541)
T KOG2442|consen   14 SFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK   93 (541)
T ss_pred             heEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc
Confidence            56688999999999999999999999999999999999999999999999999888877777788899999999999999


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcccccccCCCCCCCcccceEEEechhhhHhHHHHHhcCcEEEE
Q 009437           99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV  178 (535)
Q Consensus        99 l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~V  178 (535)
                      ++++++++.||+|+|++|+++||++||+|++|.||.+++..|.|.+.++..+++||++||++++|+++.+....|++|++
T Consensus        94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~  173 (541)
T KOG2442|consen   94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL  173 (541)
T ss_pred             ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence            99999999999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             EEecCCCCccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhcCCCCccccccCCCCCCceeeCccchhhhhHHH
Q 009437          179 QLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIA  258 (535)
Q Consensus       179 ~l~~p~~p~vD~s~~~L~lmAv~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~f~v~a  258 (535)
                      .+|+|++|.+|+++++||+|||+||.+|+|||++++||+..|+++.++|+.+++.+.+|++|++..++|+..|+.|++++
T Consensus       174 ~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~  253 (541)
T KOG2442|consen  174 ALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTA  253 (541)
T ss_pred             EEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhh
Confidence            99999999999999999999999999999999999999999999988887777777888889999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccccCCceeeeccccccchhhhhhhhhHHHHHHhhh
Q 009437          259 SCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSCFRWFQHAGDSFIKVPFFGAVSYLTLAVCPFCIAFSVVWA  338 (535)
Q Consensus       259 s~~L~~Ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w~  338 (535)
                      |.+|++||||++ |++|+++++|||+|+.|||+|+.++++  |++.+..+.....|..|..+++.+++.++|++++++|+
T Consensus       254 c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~--r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W~  330 (541)
T KOG2442|consen  254 CGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVH--RLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVWA  330 (541)
T ss_pred             HHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHh--hhhhhcccccccccccCChhHHHHHHHHhhhheeEEEE
Confidence            999999999996 599999999999999999999999999  77665555555677888999999999999999999999


Q ss_pred             hhhcCCchhhHHhHHHHHHHHHHHHhcccCchhhHHHHHHHHHHhhhheeeecccccc--cceeEEeeccCCCCCCCCCE
Q 009437          339 VYRRISFAWIGQDILGIALMITVLQIVRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFH--ESVMIVVARGDRSGEDGIPM  416 (535)
Q Consensus       339 ~~~~~~~~W~~~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~--~svMv~VA~~~~~~~~~~P~  416 (535)
                      ++||++|+|++||++|||+|++++|.+|+||+|++++||+++|+|||||||+||++||  ||||++||+|.++++|++||
T Consensus       331 v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiPM  410 (541)
T KOG2442|consen  331 VFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIPM  410 (541)
T ss_pred             EeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcce
Confidence            9999999999999999999999999999999999999999999999999999999998  99999999999999999999


Q ss_pred             EEEecccc-----CCCCceeeccCccchhhHHHHHhhhhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 009437          417 LLKIPRLF-----DPWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKNFRSGYFVWAMTAYGLGLLITYVALNLMDGHGQP  491 (535)
Q Consensus       417 ~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~~~~~~~~~QP  491 (535)
                      ++++||++     ++|++|||||||||++||++|+||+|||...++. ++.||.|+++||++||++||+|+++| +.|||
T Consensus       411 lLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM-~~GQP  488 (541)
T KOG2442|consen  411 LLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSV-SNIYFVWSTVAYGIGLLVTFVALVLM-KGGQP  488 (541)
T ss_pred             EEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhcccc-ceeEEehhHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999     8899999999999999999999999999998875 78999999999999999999999999 66999


Q ss_pred             eehhhchhhhHhHHHHHhhcchhhhhhccCCCCCCCCCCCCCC
Q 009437          492 ALLYIVPFTLGTFLTLGKKRGELKTLWTRGEPERACPHIQLQS  534 (535)
Q Consensus       492 ALLYlvP~~l~~~~~~a~~rgel~~lw~~~~~~~~~~~~~~~~  534 (535)
                      ||||||||||++.+++|++|||++++|+|...+..|+|.+.++
T Consensus       489 ALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~~~~~~~~~p  531 (541)
T KOG2442|consen  489 ALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQKMPAPNDLNP  531 (541)
T ss_pred             eEEEEechHHHHHHHHHHHHHHHHHHhccCCcccCCCCCcCCC
Confidence            9999999999999999999999999999999999888865543

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00730 PSN Presenilin, signal peptide peptidase, family	Back alignment and domain information

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530	Back alignment and domain information

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []	Back alignment and domain information

>cd00538 PA PA: Protease-associated (PA) domain	Back alignment and domain information

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2	Back alignment and domain information

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)	Back alignment and domain information

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3	Back alignment and domain information

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like	Back alignment and domain information

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1	Back alignment and domain information

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1	Back alignment and domain information

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)	Back alignment and domain information

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2	Back alignment and domain information

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2736 consensus Presenilin [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		535
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	8e-14
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-07

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194	Back alignment and structure

 Score = 69.1 bits (168), Expect = 8e-14
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 13/151 (8%)

Query: 48  VPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN---------- 97
                        +     +G+    +               + C+   N          
Sbjct: 42  RVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGST 101

Query: 98  KLTGEAILVHRGG-CSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAI 156
                  L+ RGG C+F  K + A E  AS  +I N      +++  S+     + I AI
Sbjct: 102 VQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAI 159

Query: 157 MLPQDAGANLEKLIKNNSVVSVQLYSPRRPV 187
           M+    G  + + I+    V++ +   ++  
Sbjct: 160 MIGNLKGTKILQSIQRGIQVTMVIEVGKKHG 190

PyMOL of 3icu

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		535
4hyg_A		301	Putative uncharacterized protein; protease, membra	99.93
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.86
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	99.0
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.92
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	98.54
3kas_A		640	Transferrin receptor protein 1; transferrin recept	98.44
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	98.26
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	98.0
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	97.95
2kr6_A		176	Presenilin-1; protease, alternative splicing, alzh	96.45
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	90.79

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A	Back alignment and structure

Probab=99.93  E-value=2.3e-26  Score=228.50  Aligned_cols=174  Identities=26%  Similarity=0.301  Sum_probs=122.8

Q ss_pred             hhhHHHHHHhhhhhhcCCchhhHHhHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHhhhheeeecccccccceeEEee
Q 009437          327 CPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQI--VRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVA  404 (535)
Q Consensus       327 ~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~i~~i~~--i~l~s~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~VA  404 (535)
                      .+.++++++.++.|.    +|+..|+.|++++..+...  +++..+ .+.+||+++++||++|||+|+      +|+++|
T Consensus       108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLA  176 (301)
T 4hyg_A          108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLA  176 (301)
T ss_dssp             HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHT
T ss_pred             HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHH
Confidence            344566666555555    4999999999999998876  455777 899999999999999999776      999999


Q ss_pred             ccCCCCCCCCCEEEEeccccC-------------CCCceeeccCccchhhHHHHHhhhhhhhcccc-cCCcchHHHHHHH
Q 009437          405 RGDRSGEDGIPMLLKIPRLFD-------------PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKK-NFRSGYFVWAMTA  470 (535)
Q Consensus       405 ~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~-~~~~~YF~~~~~~  470 (535)
                      +|.-  +.++|+++++|+-.+             .+++..++|+||+++|+++++.+.+||.+... .+.+--++.+++|
T Consensus       177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~G  254 (301)
T 4hyg_A          177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMVG  254 (301)
T ss_dssp             TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHHH
T ss_pred             Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHHH
Confidence            9954  257999999998421             14678899999999999999999999965431 1111238999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCcceehhhchhhhHhHHHHHhhcchhh
Q 009437          471 YGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGELK  515 (535)
Q Consensus       471 Y~~GL~~t~~~~~~~~~~~QPALLYlvP~~l~~~~~~a~~rgel~  515 (535)
                      |.+||.++...  ++++++||.|.||.+.++++.++.++.+||+.
T Consensus       255 t~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          255 SLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            99999999663  34599999999999999999999999999987

PyMOL of 4hyg

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		535
d1de4c2		193	Transferrin receptor ectodomain, apical domain {Hu	98.53
d3bi1a2		233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.3

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.5e-08  Score=90.68  Aligned_cols=95  Identities=20%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             CceeEEEEecCCCCC--CCCCCCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCcc------------ccccc
Q 009437           77 DASQNRLVLADPPDC--CSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL------------FKMVC  142 (535)
Q Consensus        77 ~~~~~~Lv~~~p~~g--C~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l------------~~M~~  142 (535)
                      +..+++++.++-..-  =+.+..+++|||+|++||+|+|.+|++|||++||+|+|||+|..+.            ..+..
T Consensus        37 G~v~g~lVy~n~G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~  116 (193)
T d1de4c2          37 ATVTGKLVHANFGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGT  116 (193)
T ss_dssp             EEEEECEEECSTTCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSS
T ss_pred             CceeEEEEEccCCCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCC
Confidence            347788888752100  0112257899999999999999999999999999999999974320            01100


Q ss_pred             CC----------------CCCCCcccceEEEechhhhHhHHHHHh
Q 009437          143 ES----------------NETDVDIRIPAIMLPQDAGANLEKLIK  171 (535)
Q Consensus       143 ~~----------------~~~~~~i~IPvv~Is~~~G~~L~~~L~  171 (535)
                      ++                .+...-.+||+.-|+.+|++.|++.|.
T Consensus       117 GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         117 GDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            00                011122479999999999999999984

PyMOL of d1de4c2

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure