Citrus Sinensis ID: 009457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHcccHHHHHHHHHccccccHHcccccccHHHcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccHccHHcHccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccEEEcccccccHHHccccccEEEEc
Coil and Loop (DISEMBL)
mdslksfrFITHQSFFSAVRSGDLETLKNIIDNltkdeapdgsSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVkirsrsdmntfHVAAKKGHLGIAKELVSIWPelckscdssntsplysaAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAlidrdpeivtikdkkgqTALHMAVKGQCPSVVEYILSADHLILnerdkkgntaVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALfnlpgqylmhgpevgkaniadkVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQrfglfrndsqRRIRrasgsksfSWSVYSAnmsdvdeynsdmeKIYAL
Flexible Loop (DISEMBL)
mdslksfrfithqsffsavrsgdlETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKngktalhtaarygLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAvhiatrkcrpQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVsaqliqnektnrrvSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFglfrndsqrrirrasgsksfswsvysanmsdvdeynsdmekiyal
Low Complexity Region (SEG)
MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL
Disordered region (IsUnstruct)
******FRFITHQSFFSAVRSGDLETLKNIIDNL*********************TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTV**I********************IAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFRN****************W***********************
Disordered Region (DISOPRED)
**S**S*RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLI*************KELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLF***********************************MEKIYAL
Disordered Region (DISEMBL)
MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFRNDSQR***********SWSVYSANMSDVDEYNSDMEKIYAL
Disordered Region (DISPRO)
********FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFR************************MSDVDEYNSDMEKIYAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQxxxxxxxxxxxxxxxxxxxxxAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	yes	no	0.986	0.990	0.732	0.0
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.882	0.798	0.425	1e-102
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.919	0.937	0.401	5e-96
Q1RJR6	273	Putative ankyrin repeat p	yes	no	0.179	0.351	0.394	3e-14
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	no	0.397	0.053	0.285	8e-14
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.400	0.109	0.299	7e-13
B2RXR6	993	Serine/threonine-protein	no	no	0.404	0.217	0.300	9e-13
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.387	0.053	0.287	1e-12
Q5F478	990	Serine/threonine-protein	yes	no	0.404	0.218	0.295	1e-12
Q8N8A2	993	Serine/threonine-protein	no	no	0.404	0.217	0.295	3e-12

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/534 (73%), Positives = 448/534 (83%), Gaps = 7/534 (1%)

Query: 4   LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSS---LVSELMAMQNDTGETA 60
           +K  +F+THQ+FFS+VRSGDL  L+ ++DNLT DE  D SS    V+ELM++QND GETA
Sbjct: 3   MKQMKFLTHQAFFSSVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETA 62

Query: 61  LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK 120
           +YISAA N +DIF  L++F  +E VKIRS+SDMN FHVAAK+GHLGI KEL+ +WPELC+
Sbjct: 63  VYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCR 122

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
            CD+SNTSPLY+AAVQDHL++VN +LD D SC  IVRKNGKT+LHTA RYGL+ IV ALI
Sbjct: 123 ICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALI 182

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
           ++D  IV +KDKKGQTALHMAVKG+   VVE IL AD+ ILNERD+KGNTA+HIATRK R
Sbjct: 183 EKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKAR 242

Query: 241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
           PQI SLLL++T+I+VNAINNQ+ETAMDLADKLQY +S LEI EAL EAGAKH R++G+ D
Sbjct: 243 PQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRED 302

Query: 301 EAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 360
           EA  LKR VSDIKHEV +QL+QNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA
Sbjct: 303 EARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 362

Query: 361 SIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWD 420
           SIAFLA+FNLPGQY   G  VG+ANIA + GFRVFCLLNATSLFISLAVVVVQITLVAWD
Sbjct: 363 SIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWD 422

Query: 421 TTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASM 480
           T AQK+VVSVVNKLMW ACACT  AFL+IAF VVG G+SWMAITITL+GAPILVGTLASM
Sbjct: 423 TRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASM 482

Query: 481 CYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           CYFVFRQRF    NDSQRRIRR  GS       YS ++SD ++  SD EKI AL
Sbjct: 483 CYFVFRQRFR-SGNDSQRRIRR--GSSKSFSWSYSHHVSDFED-ESDFEKIIAL 532

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/493 (42%), Positives = 306/493 (62%), Gaps = 22/493 (4%)

Query: 43  SSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKK 102
           +S+V+E+    N+ GETAL+ +A     D+   LLK+   E +  ++RS  +  H+AA +
Sbjct: 119 ASIVNEV----NELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQ 174

Query: 103 GHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKT 162
           GH  I + L+     L ++   SN +PL SAA++ H +VVN +L    +   I R N K 
Sbjct: 175 GHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKN 234

Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILN 222
           ALH AAR G + ++ AL+ +DP++    DKKGQTALHMAVKGQ   VV+ +L AD  I+ 
Sbjct: 235 ALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVM 294

Query: 223 ERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIK 282
           + DK  NTA+H+ATRK R +IV LLLS    + N +    +TA+D+A+ L   + +  IK
Sbjct: 295 QPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIK 354

Query: 283 EALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHR 342
           E LA +GA  A  + Q  +  EL+ TV+ IK++V  QL Q ++TN+ V  I+KELRKLHR
Sbjct: 355 ECLARSGALRANELNQPRD--ELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHR 412

Query: 343 EAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATS 402
           E + N TNS+TVVAVLFA++AF A+F +PG         G A +  +  F++F + NA +
Sbjct: 413 EGINNATNSVTVVAVLFATVAFAAIFTVPGG----DNNDGSAVVVGRASFKIFFIFNALA 468

Query: 403 LFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMA 462
           LF SLAVVVVQITLV  +T A+K+VV V+NKLMW A  CT  AFL+ +++VVG  + W A
Sbjct: 469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAA 528

Query: 463 ITITLMGAPILVGTLASMCYFVFRQRFGLFRNDSQR-RIRRASGSKSFSWSVYSANMSDV 521
             +T++G  I+ G L +M Y+V + +    R  S R +++ A  S S SW     + SD 
Sbjct: 529 ELVTVVGGVIMAGVLGTMTYYVVKSK----RTRSMRKKVKSARRSGSNSW-----HHSDF 579

Query: 522 DEYNSDMEKIYAL 534
              NS+++ I+A+
Sbjct: 580 S--NSEVDPIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  352 bits (902), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 214/533 (40%), Positives = 313/533 (58%), Gaps = 42/533 (7%)

Query: 15  FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFS 74
             +AVR G  + L  +I         DG  L  EL+A QN +GETALY++A   + D+  
Sbjct: 21  LHTAVREGKTDLLLEMIGE------HDGVEL-KELLAEQNQSGETALYVAAEYGYTDMVK 73

Query: 75  CLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA 134
            L+K  D  +   ++++  + FH+AAK G+L +   L+   PEL  + DSS T+ L++AA
Sbjct: 74  ILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAA 133

Query: 135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG 194
            Q H ++V  +LD  V    I R NGKTALH+AAR G   IV  LI++   +VT  DKKG
Sbjct: 134 SQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKG 193

Query: 195 QTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID 254
           QTALHMAVKGQ   +V+ ++ AD  ++N  D KGNT +HIA RK R +IV  +L Y  + 
Sbjct: 194 QTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVS 253

Query: 255 VNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDE------AMELKRT 308
             A+N   ETA+D+A+K        EI   L + G ++AR +   ++      + +LK T
Sbjct: 254 RVAVNKSGETALDIAEK----TGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKET 309

Query: 309 VSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALF 368
           VS+I HEV  QL Q  +T R + GIAK + K+H E + N  NS T+VA+L A++AF A+F
Sbjct: 310 VSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIF 369

Query: 369 NLPGQY------LMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTT 422
           N+PGQY      +  G  +G+A  A +  F +F + ++ +LFISLAVVVVQ ++V  +  
Sbjct: 370 NVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERR 429

Query: 423 AQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCY 482
           A+KQ+++++NKLMW AC     AF+S++F+VVG     +A+ +T +GA I+V TL +MCY
Sbjct: 430 AKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCY 489

Query: 483 FVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDM-EKIYAL 534
           +V   R                GSKS   S+    MSD +  +S    K+YA+
Sbjct: 490 WVIANRI--------------EGSKSSPASM----MSDPELADSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q1RJR6|Y317_RICBR Putative ankyrin repeat protein RBE_0317 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0317 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 61/109 (55%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           KNG T LH A   G   +V  L       V  KD  G + LH+A+K   P +VE +LS +
Sbjct: 92  KNGNTLLHAAIDQGKSEVVKFLTSYKNLEVNTKDLGGNSPLHLAIKSNNPEIVEMLLSYE 151

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
           ++ +NE+DK G+T +H A R    +I+ +LL    IDVN  +NQ ET +
Sbjct: 152 NINVNEKDKYGDTTLHKAIRSYNHKIIEMLLLREEIDVNEKDNQGETPL 200

Rickettsia bellii (strain RML369-C) (taxid: 336407)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 19/231 (8%)

Query: 52  MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
           + N  GETAL+++A     ++  CLL+  +  +V  R+R +    H+A++ G      E+
Sbjct: 459 VTNIRGETALHMAARAGQVEVVRCLLR--NGALVDARAREEQTPLHIASRLGK----TEI 512

Query: 112 VSIWPELCKSCDSSNT---SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168
           V +  +     D++ T   +PL+ +A +  +DV + +L+A  + + +  K G T LH AA
Sbjct: 513 VQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHS-LATKKGFTPLHVAA 571

Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL---SADHLILNERD 225
           +YG +++   L+ R     +   K G T LH+A       V   +L   ++ H       
Sbjct: 572 KYGSLDVAKLLLQRRAAADS-AGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATA---- 626

Query: 226 KKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276
           K G T +HIA +K + QI S LL+Y + + N +  Q  T + LA +  + D
Sbjct: 627 KNGYTPLHIAAKKNQMQIASTLLNYGA-ETNIVTKQGVTPLHLASQEGHTD 676

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 23/237 (9%)

Query: 44  SLVSELM---AMQNDT---GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFH 97
           ++VS+LM   A  N T   GETAL+++A +   ++   L++  D   V+ +++ D    H
Sbjct: 430 NIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQ--DGAQVEAKAKDDQTPLH 487

Query: 98  VAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVR 157
           ++A+ G   I ++L+        +  +S  +PL+ AA + H DV   +LD   S + I  
Sbjct: 488 ISARLGKADIVQQLLQQGAS-PNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLS-ITT 545

Query: 158 KNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL- 214
           K G T LH AA+YG + + + L+ +   P+      K G T LH+A       V   +L 
Sbjct: 546 KKGFTPLHVAAKYGKLEVASLLLQKSASPDAA---GKSGLTPLHVAAHYDNQKVALLLLD 602

Query: 215 --SADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
             ++ H       K G T +HIA +K +  I + LL Y + D NA+  Q   ++ LA
Sbjct: 603 QGASPHAAA----KNGYTPLHIAAKKNQMDIATSLLEYGA-DANAVTRQGIASVHLA 654

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 59  TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL 118
           T L+ + A+  ++    L+K      V  R ++     HVAA    +  A+ ++ +   +
Sbjct: 76  TPLHRAVASRSEEAVQVLIKH--SADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSV 133

Query: 119 CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
             S D    + L+ AA+  H+++VN +L    +     +K+ + ALH AA  G +++V  
Sbjct: 134 NVS-DRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKD-RRALHWAAYMGHLDVVAL 191

Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
           LI+   E VT KDKKG T LH A      SVV+++L+   + ++E +  GNTA+HIA   
Sbjct: 192 LINHGAE-VTCKDKKGYTPLHAAASNGQISVVKHLLNLG-VEIDEINVYGNTALHIACYN 249

Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEI 281
            +  +V+ L+ Y + +VN  NN   T +  A    +G   LE+
Sbjct: 250 GQDAVVNELIDYGA-NVNQPNNSGFTPLHFAAASTHGALCLEL 291

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 19/226 (8%)

Query: 57  GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
           GETAL+++A     ++  CLL+  +  +V  R+R +    H+A++ G      E+V +  
Sbjct: 464 GETALHMAARAGQVEVVRCLLR--NGALVDARAREEQTPLHIASRLGKT----EIVQLLL 517

Query: 117 ELCKSCDSSNT---SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLI 173
           +     D++ T   +PL+ +A +  +DV + +L+A  + + +  K G T LH AA+YG +
Sbjct: 518 QHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHS-LATKKGFTPLHVAAKYGSL 576

Query: 174 NIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL---SADHLILNERDKKGNT 230
           ++   L+ R         K G T LH+A       V   +L   ++ H       K G T
Sbjct: 577 DVAKLLLQRR-AAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATA----KNGYT 631

Query: 231 AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276
            +HIA +K + QI S LL+Y + + N +  Q  T + LA +  + D
Sbjct: 632 PLHIAAKKNQMQIASTLLNYGA-ETNTVTKQGVTPLHLASQEGHTD 676

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 59  TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL 118
           T L+ + A+  ++    L+K      V  R ++     HVAA    L  A+ ++ +   +
Sbjct: 76  TPLHRAVASRSEEAVQVLIKHS--ADVNARDKNWQTPLHVAAANKALKCAEIIIPMLSSV 133

Query: 119 CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
             S D    + L+ AA+  H+++VN +L    +     +K+ + ALH AA  G + +V  
Sbjct: 134 NVS-DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKD-RRALHWAAYMGHLEVVAL 191

Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
           LI+   E VT KDKKG T LH A      ++V+++L+   + ++E +  GNTA+HIA   
Sbjct: 192 LINHGAE-VTCKDKKGYTPLHAAASNGQINIVKHLLNLG-VEIDEMNIYGNTALHIACYN 249

Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEI 281
            +  +V+ L+ Y + +VN  NN   T +  A    +G   LE+
Sbjct: 250 GQDSVVNELIDYGA-NVNQPNNNGFTPLHFAAASTHGALCLEL 291

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 59  TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL 118
           T L+ + A+  ++    L+K      V  R ++     HVAA    +  A+ ++ +   +
Sbjct: 76  TPLHRAVASRSEEAVQVLIKH--SADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLSSV 133

Query: 119 CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
             S D    + L+ AA+  H+++VN +L    +     +K+ + ALH AA  G +++V  
Sbjct: 134 NVS-DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKD-RRALHWAAYMGHLDVVAL 191

Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
           LI+   E VT KDKKG T LH A      +VV+++L+   + ++E +  GNTA+HIA   
Sbjct: 192 LINHGAE-VTCKDKKGYTPLHAAASNGQINVVKHLLNLG-VEIDEINVYGNTALHIACYN 249

Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEI 281
            +  +V+ L+ Y + +VN  NN   T +  A    +G   LE+
Sbjct: 250 GQDAVVNELIDYGA-NVNQPNNNGFTPLHFAAASTHGALCLEL 291

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
255570065	531	ankyrin repeat-containing protein, putat	0.981	0.986	0.840	0.0
118485437	529	unknown [Populus trichocarpa]	0.979	0.988	0.802	0.0
224111444	526	predicted protein [Populus trichocarpa]	0.979	0.994	0.800	0.0
225424370	532	PREDICTED: ankyrin repeat-containing pro	0.996	1.0	0.788	0.0
224099553	529	predicted protein [Populus trichocarpa]	0.979	0.988	0.785	0.0
449465801	530	PREDICTED: ankyrin repeat-containing pro	0.986	0.994	0.766	0.0
356513058	530	PREDICTED: ankyrin repeat-containing pro	0.988	0.996	0.755	0.0
356524521	528	PREDICTED: ankyrin repeat-containing pro	0.981	0.992	0.755	0.0
358347224	531	Ankyrin repeat-containing protein [Medic	0.992	0.998	0.725	0.0
21537142	532	unknown [Arabidopsis thaliana]	0.986	0.990	0.732	0.0

>gi|255570065|ref|XP_002525995.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223534727|gb|EEF36419.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/526 (84%), Positives = 475/526 (90%), Gaps = 2/526 (0%)

Query: 9   FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN 68
           F+T QSFFSAVRS DL ++K I+  +TKDE  DGSS VS+LM +Q D GETALYI+A N 
Sbjct: 8   FLTRQSFFSAVRSADLNSVKEIVKKITKDEPCDGSSPVSDLMTVQTDAGETALYIAAENK 67

Query: 69  FQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS 128
           F+D+FS L+KF D+E VKIRS+SDMN FHVAAKKGHLGI KEL+SIWPELCK CDSSNTS
Sbjct: 68  FEDVFSYLVKFSDIEAVKIRSKSDMNAFHVAAKKGHLGIVKELLSIWPELCKLCDSSNTS 127

Query: 129 PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
           PLYSAAVQDHLDVVN ILDADVS  RIVRKNGKTALHTAARYGL+ +V ALIDRDPEIV 
Sbjct: 128 PLYSAAVQDHLDVVNAILDADVSSLRIVRKNGKTALHTAARYGLVEMVKALIDRDPEIVR 187

Query: 189 IKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
           +KDKKGQTALHMAVKGQ  +VVE ILSAD  ILNERDKKGNTAVHIATRK RP IVSLLL
Sbjct: 188 VKDKKGQTALHMAVKGQSTAVVEEILSADCSILNERDKKGNTAVHIATRKSRPVIVSLLL 247

Query: 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRT 308
           +Y SIDVN INNQRETAMDLADKLQYG+S++EIKEAL +AGAKHARYVG VDEAMELKRT
Sbjct: 248 TYRSIDVNVINNQRETAMDLADKLQYGESSMEIKEALTDAGAKHARYVGTVDEAMELKRT 307

Query: 309 VSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALF 368
           VSDIKHEV +QLIQNEKTNRRVSGIAKELRKLHREAVQNTTNS+TVVAVLF+SIAFLA+F
Sbjct: 308 VSDIKHEVHSQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFSSIAFLAIF 367

Query: 369 NLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVV 428
           NLPGQYLM G EVGKANIAD VGFRVFCLLNATSLFISLAVVVVQITLVAWDT AQKQVV
Sbjct: 368 NLPGQYLMDGGEVGKANIADNVGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKQVV 427

Query: 429 SVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQR 488
           SVVNKLMW ACACTC +FLSIAF+VVG G SWMAITITLMGAP+LVGTLASMCYFVFRQ 
Sbjct: 428 SVVNKLMWAACACTCGSFLSIAFVVVGKGSSWMAITITLMGAPLLVGTLASMCYFVFRQH 487

Query: 489 FGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           FG FR DS+RRI+R SGSKSFSWS YSAN+SDVDEYNSDMEKIYAL
Sbjct: 488 FGGFR-DSERRIKRGSGSKSFSWS-YSANISDVDEYNSDMEKIYAL 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485437|gb|ABK94575.1| unknown [Populus trichocarpa]

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/532 (80%), Positives = 468/532 (87%), Gaps = 9/532 (1%)

Query: 3   SLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALY 62
           S  S RFI HQ+FFSAVRSGDL++L+ I+ +   D        VS+LM++Q D GETALY
Sbjct: 7   SKSSLRFIAHQAFFSAVRSGDLDSLRQIVGDQPSD--------VSDLMSLQTDAGETALY 58

Query: 63  ISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC 122
           I+A NN ++IFS L+K CD+E VKIRS+SD++ FH+AAKKGHLGI KEL+++WPELCK C
Sbjct: 59  IAADNNLEEIFSYLIKRCDLETVKIRSKSDLDAFHLAAKKGHLGIVKELLAMWPELCKLC 118

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
           DSSNTSPLYSAAV++HLDVVN ILDADVS  RIVRKNGKTALHTAARYGL++IV  LI R
Sbjct: 119 DSSNTSPLYSAAVKNHLDVVNAILDADVSSMRIVRKNGKTALHTAARYGLLDIVKVLIAR 178

Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
           D  IV IKDKKGQTALHMAVKGQ  SVVE IL ADH ILNERDKKGNTAVHIATRK RPQ
Sbjct: 179 DSGIVCIKDKKGQTALHMAVKGQSTSVVEEILLADHSILNERDKKGNTAVHIATRKSRPQ 238

Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEA 302
           I+ LLLSYTSI+VN INN+RETAMDLADKLQYG+S LEIKEAL EAGAKHAR+VGQ+DEA
Sbjct: 239 IIFLLLSYTSINVNIINNERETAMDLADKLQYGESALEIKEALIEAGAKHARHVGQMDEA 298

Query: 303 MELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASI 362
           MELKRTVSDIKHEV +QLIQNEKTNRRVSGIAKELRKLHREAVQNTTNS+TVVAVLFASI
Sbjct: 299 MELKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFASI 358

Query: 363 AFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTT 422
           AFLA+FNLPGQY+  G E GKANIAD VGF+VFCLLNATSLFISLAVVVVQITLVAWDT 
Sbjct: 359 AFLAIFNLPGQYIQDGAETGKANIADSVGFQVFCLLNATSLFISLAVVVVQITLVAWDTQ 418

Query: 423 AQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCY 482
           AQKQVVSVVNKLMW ACACTC AFLSIAF+VVG   SWMAITITL GAPILVGTLASMCY
Sbjct: 419 AQKQVVSVVNKLMWAACACTCGAFLSIAFVVVGKKSSWMAITITLTGAPILVGTLASMCY 478

Query: 483 FVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           FVFRQ FG FR DSQRRI+RASGSKSFSWSV+S N+SD DEYNSD+EKIYAL
Sbjct: 479 FVFRQHFGFFR-DSQRRIKRASGSKSFSWSVHSTNISDPDEYNSDLEKIYAL 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111444|ref|XP_002315857.1| predicted protein [Populus trichocarpa] gi|222864897|gb|EEF02028.1| predicted protein [Populus trichocarpa]

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/532 (80%), Positives = 467/532 (87%), Gaps = 9/532 (1%)

Query: 3   SLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALY 62
           S  S RFI HQ+FFSAVRSGDL++L+ I+ +   D        VS+LM++Q D GETALY
Sbjct: 4   SKSSLRFIAHQAFFSAVRSGDLDSLRQIVGDQPSD--------VSDLMSLQTDAGETALY 55

Query: 63  ISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC 122
           I+A NN ++IFS L+K CD+E VKIRS+SD++ FH+AAKKGHLGI KEL+++WPELCK C
Sbjct: 56  IAADNNLEEIFSYLIKRCDLETVKIRSKSDLDAFHLAAKKGHLGIVKELLAMWPELCKLC 115

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
           DSSNTSPLYSAAV++HLDVVN ILDADVS  RIVRKNGKTALHTAARYGL++IV  LI R
Sbjct: 116 DSSNTSPLYSAAVKNHLDVVNAILDADVSSMRIVRKNGKTALHTAARYGLLDIVKVLIAR 175

Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
           D  IV IKDKKGQTALHMAVKGQ  SVVE IL ADH ILNERDKKGNTAVHIATRK RPQ
Sbjct: 176 DSGIVCIKDKKGQTALHMAVKGQSTSVVEEILVADHSILNERDKKGNTAVHIATRKSRPQ 235

Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEA 302
           I+ LLLSYTSI+VN INN+RETAMDLADKLQYG+S LEIKEAL EAGAKHAR+VGQ+DEA
Sbjct: 236 IIFLLLSYTSINVNIINNERETAMDLADKLQYGESALEIKEALIEAGAKHARHVGQMDEA 295

Query: 303 MELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASI 362
           MELKRTVSDIKHEV +QLIQNEKTNRRVSGIAKELRKLHREAVQNTTNS+TVVAVLFASI
Sbjct: 296 MELKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFASI 355

Query: 363 AFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTT 422
           AFLA+FNLPGQY+  G E GKANIA  VGF+VFCLLNATSLFISLAVVVVQITLVAWDT 
Sbjct: 356 AFLAIFNLPGQYIQDGAETGKANIAGSVGFQVFCLLNATSLFISLAVVVVQITLVAWDTQ 415

Query: 423 AQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCY 482
           AQKQVVSVVNKLMW ACACTC AFLSIAF+VVG   SWMAITITL GAPILVGTLASMCY
Sbjct: 416 AQKQVVSVVNKLMWAACACTCGAFLSIAFVVVGKKSSWMAITITLTGAPILVGTLASMCY 475

Query: 483 FVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           FVFRQ FG FR DSQRRI+RASGSKSFSWSV+S N+SD DEYNSD+EKIYAL
Sbjct: 476 FVFRQHFGFFR-DSQRRIKRASGSKSFSWSVHSTNISDPDEYNSDLEKIYAL 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424370|ref|XP_002284902.1| PREDICTED: ankyrin repeat-containing protein At2g01680 [Vitis vinifera]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/534 (78%), Positives = 472/534 (88%), Gaps = 2/534 (0%)

Query: 1   MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETA 60
           MD L S RFI++QS F+AVRSGDLE+LK II  LT++E    +S+++ LMA++ND  ETA
Sbjct: 1   MD-LMSLRFISNQSLFAAVRSGDLESLKQIIHKLTEEEPSVRASILA-LMAVKNDADETA 58

Query: 61  LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK 120
           LYI+A NN  +IF+ LL+FCD++ V IRS+S M+ FHVAAK+GHLGI KEL+ +WPELCK
Sbjct: 59  LYIAADNNLHEIFTYLLQFCDLQTVMIRSKSGMDAFHVAAKRGHLGIVKELLDLWPELCK 118

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           SCDS+NTSPLYSAAVQDHLDVV  ILDADVS  RIVRKNGKT+LHTAARYGL+ +V  LI
Sbjct: 119 SCDSTNTSPLYSAAVQDHLDVVTAILDADVSSIRIVRKNGKTSLHTAARYGLLRMVKVLI 178

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
           +RD  IV IKDKKGQTALHMAVKGQCP VV+ +L+ADH ILNERDKKGNTAVHIATRKCR
Sbjct: 179 ERDAGIVCIKDKKGQTALHMAVKGQCPDVVDELLAADHSILNERDKKGNTAVHIATRKCR 238

Query: 241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
           PQIVSLLLSY S+DVN INNQ+ETAMDL DKLQYG+S LEIK+ALAE+GAKHARYVGQ D
Sbjct: 239 PQIVSLLLSYRSVDVNVINNQKETAMDLVDKLQYGESKLEIKDALAESGAKHARYVGQED 298

Query: 301 EAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 360
           E MELKRTVSDIKHEV +QLIQNEKT RRVSGIAKELRKLHREAVQNTTNS+TVVAVLFA
Sbjct: 299 ETMELKRTVSDIKHEVHSQLIQNEKTQRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFA 358

Query: 361 SIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWD 420
           S AFLA+FNLPGQY+M GPEVGKA IAD VGF+VFCLLNATSLFISLAVVVVQITLVAWD
Sbjct: 359 STAFLAIFNLPGQYIMGGPEVGKARIADNVGFQVFCLLNATSLFISLAVVVVQITLVAWD 418

Query: 421 TTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASM 480
           T AQKQVVSVVNKLMW AC  T AAFLSIAF+VVG G SWM+ITITL+G PILVGTLA M
Sbjct: 419 TRAQKQVVSVVNKLMWAACISTGAAFLSIAFVVVGQGGSWMSITITLIGTPILVGTLAFM 478

Query: 481 CYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
            YFVFRQ FG+F NDSQRRIRRA+GSKSFSWS+YSAN+SD+++YNSD EKIYAL
Sbjct: 479 AYFVFRQHFGIFGNDSQRRIRRATGSKSFSWSMYSANISDLEDYNSDREKIYAL 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099553|ref|XP_002311530.1| predicted protein [Populus trichocarpa] gi|222851350|gb|EEE88897.1| predicted protein [Populus trichocarpa]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/532 (78%), Positives = 460/532 (86%), Gaps = 9/532 (1%)

Query: 3   SLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALY 62
           S  S RFI +Q FF+AVRSGDL++LK I+      E P   S VS+LM++Q + GETALY
Sbjct: 7   SKSSLRFIAYQRFFTAVRSGDLDSLKQIVG-----EQP---SDVSDLMSLQTNAGETALY 58

Query: 63  ISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC 122
           I+A NN +++FS L+K CD E VKIRS+SD+N FH+AAKKGHLGI K+L+ +WPELCK C
Sbjct: 59  IAADNNLEEVFSYLVKLCDFETVKIRSKSDLNAFHLAAKKGHLGIVKDLLVMWPELCKLC 118

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
           DSSNTSPLYSAAV+DHLDVVN ILD DVS  RIVRKN KTALHTAARYGL+++V  LI R
Sbjct: 119 DSSNTSPLYSAAVKDHLDVVNAILDVDVSSMRIVRKNEKTALHTAARYGLLDMVKVLIHR 178

Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ 242
           DP IV IKDKKGQTALHMAVKGQ  SVVE I  AD  ILNERDKKGNTAVH+ATRK RPQ
Sbjct: 179 DPGIVCIKDKKGQTALHMAVKGQSTSVVEEIFLADRSILNERDKKGNTAVHVATRKSRPQ 238

Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEA 302
           I+SLLL+Y SIDVN INNQ ETAMDLADKL YG+S LEIKEAL EAGAKHAR+VGQ+DEA
Sbjct: 239 IISLLLNYISIDVNIINNQHETAMDLADKLPYGESALEIKEALTEAGAKHARHVGQMDEA 298

Query: 303 MELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASI 362
           MELKRTVSDIKHEV +QLIQNEKTNRRVSGIAKELRK+HREAVQNTTNS+TVVAVLFASI
Sbjct: 299 MELKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKIHREAVQNTTNSVTVVAVLFASI 358

Query: 363 AFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTT 422
           AFLA+FNLPGQY+  G E  KA IAD VGF+VFCLLNATSLFISLAVVVVQITLVAWDT 
Sbjct: 359 AFLAIFNLPGQYIQDGAETRKAYIADNVGFQVFCLLNATSLFISLAVVVVQITLVAWDTQ 418

Query: 423 AQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCY 482
           AQKQ+VS+VNKLMW ACACTC AFLSIAF+VVG   SWMAITITL GAPILVGTLASMCY
Sbjct: 419 AQKQLVSIVNKLMWAACACTCGAFLSIAFVVVGKKSSWMAITITLTGAPILVGTLASMCY 478

Query: 483 FVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           FVFRQ FG FR DSQRRI+RASGSKSFSWSVYSAN+SD DEYNSD+EKIYAL
Sbjct: 479 FVFRQHFGAFR-DSQRRIKRASGSKSFSWSVYSANISDPDEYNSDLEKIYAL 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465801|ref|XP_004150616.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Cucumis sativus]

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/530 (76%), Positives = 465/530 (87%), Gaps = 3/530 (0%)

Query: 5   KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYIS 64
           K+ RFITHQSFFS VRSGDLE +K ++D L  D+  +GSS +++LMAMQND GET LY++
Sbjct: 4   KALRFITHQSFFSVVRSGDLEAVKQVLDKLGGDDQAEGSS-ITDLMAMQNDAGETPLYVA 62

Query: 65  AANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS 124
           A NN +++F+ LL+F  V+I+KIRS+SD++ FHVAAK+GHLGI K L++IWPELCKSCDS
Sbjct: 63  AENNLEEVFTYLLQFSTVQILKIRSKSDLHPFHVAAKRGHLGIVKVLLAIWPELCKSCDS 122

Query: 125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184
           SNTSPLYSAAVQDHL+VVN ILDADV+  RIVRKNGKTALH  ARYGL+ IV  LID DP
Sbjct: 123 SNTSPLYSAAVQDHLEVVNAILDADVNTLRIVRKNGKTALHNVARYGLLRIVKTLIDHDP 182

Query: 185 EIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244
            IV IKDKK QTALHMAVKGQ  + VE +L  +  ILNERDK GNTA+HIATRKCR +IV
Sbjct: 183 GIVAIKDKKSQTALHMAVKGQSTAAVEELLQVNASILNERDKMGNTALHIATRKCRSEIV 242

Query: 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAME 304
           SLLLS+TS+DVNAINNQRETAMDLADKLQY +S+LEIKEALAEAGAK+AR+VGQVDEAME
Sbjct: 243 SLLLSFTSLDVNAINNQRETAMDLADKLQYSESSLEIKEALAEAGAKYARHVGQVDEAME 302

Query: 305 LKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAF 364
           LKRTVSDIKHEV +QLIQNEKT RRVSGI KEL+KLHREAVQNTTNSITVVAVLFASIAF
Sbjct: 303 LKRTVSDIKHEVHSQLIQNEKTRRRVSGIVKELKKLHREAVQNTTNSITVVAVLFASIAF 362

Query: 365 LALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQ 424
           LA+FNLPGQY+ +G +VGKANIAD +GF+VFCLLN TSLFISLAVVVVQITLVAWDTTAQ
Sbjct: 363 LAIFNLPGQYIQNGKDVGKANIADNMGFQVFCLLNTTSLFISLAVVVVQITLVAWDTTAQ 422

Query: 425 KQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFV 484
           KQVVSVVNKLMW ACACT  AF+SIA++VVG+  +WMA+ ITL+G PILV TLASMCY V
Sbjct: 423 KQVVSVVNKLMWAACACTSGAFISIAYVVVGH-ETWMALAITLVGVPILVATLASMCYLV 481

Query: 485 FRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           FRQ FG+F +DSQRRIRRASGSKSFSW  +S N+SD D+YNSD+EKIYAL
Sbjct: 482 FRQHFGIFSSDSQRRIRRASGSKSFSWP-HSVNISDDDDYNSDLEKIYAL 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513058|ref|XP_003525231.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/536 (75%), Positives = 460/536 (85%), Gaps = 8/536 (1%)

Query: 1   MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETA 60
           M   K  RF+ +QS FS+V SGD + +K +++ +  +E     S +S++M++QND GETA
Sbjct: 1   MMEAKGVRFLAYQSIFSSVGSGDFDGVKKLVEKVKNEEW----SSLSDVMSLQNDAGETA 56

Query: 61  LYISAANNFQDIFSCLLKFCDVEIVKIRSR-SDMNTFHVAAKKGHLGIAKELVSIWPELC 119
           LYI+A NN Q+IFS LL  CD E+VKIRS+ +DMN FHVAAK+G+L I +EL++ WPE+C
Sbjct: 57  LYIAAENNLQEIFSFLLSMCDFEVVKIRSKKADMNAFHVAAKRGNLDIVRELLNTWPEVC 116

Query: 120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
           K CDSSNTSPLYSAAVQDHLDVV+ ILD DVSC  IVRKNGKT+LH AARYG++ IV  L
Sbjct: 117 KLCDSSNTSPLYSAAVQDHLDVVDAILDVDVSCMFIVRKNGKTSLHNAARYGVLRIVKTL 176

Query: 180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKC 239
           I RDP IV IKDKKGQTALHMAVKGQC SVVE IL AD  ILNERDKKGNTA+H+ATRKC
Sbjct: 177 IARDPGIVCIKDKKGQTALHMAVKGQCTSVVEEILLADPSILNERDKKGNTALHMATRKC 236

Query: 240 RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQV 299
           R QIVSLLLSY+++DVNAIN Q+ETAMDLADKL YGDS LEIKEALAE GAKHARYVG+ 
Sbjct: 237 RSQIVSLLLSYSAMDVNAINKQQETAMDLADKLPYGDSALEIKEALAEYGAKHARYVGKE 296

Query: 300 DEAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLF 359
           DEAMELKRTVSDIKHEV +QLIQNE T RRVSGIAKEL+KLHREAVQNT NS+TVVAVLF
Sbjct: 297 DEAMELKRTVSDIKHEVQSQLIQNETTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLF 356

Query: 360 ASIAFLALFNLPGQYLM-HGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVA 418
           ASIAFLA+FNLPGQY+   G E+GKANIAD V F+VFCLLN+TSLFISLAVVVVQITLVA
Sbjct: 357 ASIAFLAIFNLPGQYITEEGQEIGKANIADHVSFQVFCLLNSTSLFISLAVVVVQITLVA 416

Query: 419 WDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLA 478
           WDT AQKQ+VSVVNKLMW ACACTC AFL+IAF VVG   +WMAITITL+G PILVGTLA
Sbjct: 417 WDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGK-KTWMAITITLLGVPILVGTLA 475

Query: 479 SMCYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           SMCYFVFRQ FG+FR+DSQRRI+R SGSKSFSWS YSAN+SD+DEYNSD+EKIYAL
Sbjct: 476 SMCYFVFRQHFGIFRSDSQRRIKRTSGSKSFSWS-YSANISDLDEYNSDIEKIYAL 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524521|ref|XP_003530877.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/531 (75%), Positives = 459/531 (86%), Gaps = 7/531 (1%)

Query: 5   KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYIS 64
           K  RF+ +QS FS+V SGD + +K +++ + K+E   GSSL S++M++QND GETALYI+
Sbjct: 4   KGVRFLAYQSIFSSVGSGDFDGVKKLVEEVKKEE---GSSL-SDVMSLQNDAGETALYIA 59

Query: 65  AANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS 124
           A NN Q++FS LL  C  E+VKIRS++DMN FHVAAK+G+L I +EL++IWPE+CK CDS
Sbjct: 60  AENNLQEMFSFLLSICHFEVVKIRSKADMNAFHVAAKRGNLDIVRELLNIWPEVCKLCDS 119

Query: 125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184
           SNTSPLYSAAVQDHLDVV+ ILD DVS   IVRKNGKT+LH AARYG+  IV  LI RDP
Sbjct: 120 SNTSPLYSAAVQDHLDVVDAILDVDVSSMFIVRKNGKTSLHNAARYGVHRIVKTLIARDP 179

Query: 185 EIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244
            IV IKDKKGQTALHMAVKGQC SVVE IL AD  ILNERDKKGNTA+H+ATRKCR QIV
Sbjct: 180 GIVCIKDKKGQTALHMAVKGQCTSVVEEILLADPSILNERDKKGNTALHMATRKCRSQIV 239

Query: 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAME 304
            LLLSY+++DVNAIN Q+ETA+DLADKL YGDS LEIKEALAE GAKHARYVG+ D+AME
Sbjct: 240 GLLLSYSAVDVNAINKQQETALDLADKLPYGDSALEIKEALAEYGAKHARYVGKEDDAME 299

Query: 305 LKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAF 364
           LKRTVSDIKHEV +QLIQNE T RRVSGIAKEL+KLHREAVQNT NS+T+VAVLFASIAF
Sbjct: 300 LKRTVSDIKHEVQSQLIQNETTRRRVSGIAKELKKLHREAVQNTINSVTLVAVLFASIAF 359

Query: 365 LALFNLPGQYLM-HGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTA 423
           LA+FNLPGQY+   G E+GKA IAD V F+VFCLLN+TSLFISLAVVVVQITLVAWDT A
Sbjct: 360 LAIFNLPGQYITDEGKEIGKAKIADHVSFQVFCLLNSTSLFISLAVVVVQITLVAWDTRA 419

Query: 424 QKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYF 483
           QKQ+VSVVNKLMW ACACTC AFL+IAF VVG   +WMAITITL+G P+LVGTLASMCYF
Sbjct: 420 QKQIVSVVNKLMWAACACTCGAFLAIAFEVVGK-KTWMAITITLLGVPVLVGTLASMCYF 478

Query: 484 VFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           VFRQ FG+FR+DSQRRI+RASGSKSFSWS YSAN+SD+DEYNSD+EKIYAL
Sbjct: 479 VFRQHFGIFRSDSQRRIKRASGSKSFSWS-YSANISDLDEYNSDIEKIYAL 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347224|ref|XP_003637659.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355503594|gb|AES84797.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/535 (72%), Positives = 454/535 (84%), Gaps = 5/535 (0%)

Query: 1   MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETA 60
           MDS KS  FITHQ  F+ VRSGDLE LK ++  + K E+ +G S +SE ++MQND GET 
Sbjct: 1   MDS-KSLCFITHQDIFNVVRSGDLEGLKEVLKYVNKGESSNGPSPISEFLSMQNDAGETL 59

Query: 61  LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK 120
           LYI+A N  +D+FS LL+ CD+EI+KIRS+SDMN FHVAAK+GHL I +E++S WPE CK
Sbjct: 60  LYIAAENGVKDLFSFLLRLCDLEILKIRSKSDMNAFHVAAKRGHLEIVREILSTWPEACK 119

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
            CDSSNTSPLY AAVQDHLDVVN ILD DVS   IVRKNGKTALH AARYG++ IV ALI
Sbjct: 120 LCDSSNTSPLYLAAVQDHLDVVNAILDVDVSSMMIVRKNGKTALHNAARYGILRIVKALI 179

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
            RD  IV IKDKKGQTALHMAVKGQC SVVE IL AD ++LNE+DKKGNTA+H+ATRK R
Sbjct: 180 ARDSAIVCIKDKKGQTALHMAVKGQCTSVVEEILQADPMVLNEKDKKGNTALHMATRKAR 239

Query: 241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
            QIVS LLSY S++VNAINNQ+ETA+DLADKL YGDS+LEIKEAL++ GAK+AR +G+V+
Sbjct: 240 SQIVSFLLSYASMNVNAINNQQETALDLADKLPYGDSSLEIKEALSDCGAKNARNIGKVN 299

Query: 301 EAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 360
           EAMELKR VSDIKHEV +QL+QNEKT +RVSGIAKELRK+HREA+QNT NS+TVVAVLFA
Sbjct: 300 EAMELKRVVSDIKHEVQSQLVQNEKTRKRVSGIAKELRKIHREAIQNTINSVTVVAVLFA 359

Query: 361 SIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWD 420
           SIAF+ALF+LPGQY    PE GKANIA +V F VFCLLNATSLFISLAVVVVQITLVAWD
Sbjct: 360 SIAFMALFSLPGQYRKQQPEAGKANIAHEVAFSVFCLLNATSLFISLAVVVVQITLVAWD 419

Query: 421 TTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASM 480
           T AQ+Q+VSV+NKLMWTACACTC AFL+IAF+VVG    WMAIT+T++G PILVGTLA +
Sbjct: 420 TRAQRQIVSVINKLMWTACACTCGAFLAIAFVVVGK-ERWMAITVTVLGTPILVGTLAYL 478

Query: 481 CYFVFRQRFGLFRNDSQRRI-RRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           CYFVFR+ FG F+++SQR + +R SGSKS SWS YSA++SD +EYNSD+EKIYAL
Sbjct: 479 CYFVFRRHFG-FQSESQRVLSKRPSGSKSLSWS-YSAHISDEEEYNSDVEKIYAL 531

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537142|gb|AAM61483.1| unknown [Arabidopsis thaliana]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/534 (73%), Positives = 448/534 (83%), Gaps = 7/534 (1%)

Query: 4   LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPD---GSSLVSELMAMQNDTGETA 60
           +K  +F+THQ+FFS+VRSGDL  L+ ++DNLT DE  D    SS V+ELM++QND GETA
Sbjct: 3   MKQMKFLTHQAFFSSVRSGDLSQLQQLVDNLTGDELIDESSPSSAVAELMSVQNDAGETA 62

Query: 61  LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK 120
           +YISAA N +DIF  L++F  +E VKIRS+SDMN FHVAAK+GHLGI KEL+ +WPELC+
Sbjct: 63  VYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCR 122

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
            CD+SNTSPLY+AAVQDHL++VN +LD D SC  IVRKNGKT+LHTA RYGL+ IV ALI
Sbjct: 123 ICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALI 182

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
           ++D  IV +KDKKGQTALHMAVKG+   VVE IL AD+ ILNERD+KGNTA+HIATRK R
Sbjct: 183 EKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKAR 242

Query: 241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
           PQI SLLL++T+I+VNAINNQ+ETAMDLADKLQY +S LEI EAL EAGAKH R++G+ D
Sbjct: 243 PQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRED 302

Query: 301 EAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 360
           EA  LKR VSDIKHEV +QL+QNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA
Sbjct: 303 EARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 362

Query: 361 SIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWD 420
           SIAFLA+FNLPGQY   G  VG+ANIA + GFRVFCLLNATSLFISLAVVVVQITLVAWD
Sbjct: 363 SIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWD 422

Query: 421 TTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASM 480
           T AQK+VVSVVNKLMW ACACT  AFL+IAF VVG G+SWMAITITL+GAPILVGTLASM
Sbjct: 423 TRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASM 482

Query: 481 CYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
           CYFVFRQRF    NDSQRRIRR  GS       YS ++SD ++  SD EKI AL
Sbjct: 483 CYFVFRQRFR-SGNDSQRRIRR--GSSKSFSWSYSHHVSDFED-ESDFEKIIAL 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.986	0.990	0.743	2.9e-206
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.943	0.928	0.426	2.3e-101
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.943	0.761	0.435	1e-100
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.941	0.828	0.411	4.7e-96
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.940	0.800	0.428	2e-95
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.926	0.838	0.411	1.1e-94
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.863	0.879	0.417	4.5e-91
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.814	0.727	0.281	5.3e-40
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.719	0.670	0.275	5.2e-36
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.773	0.687	0.234	3.1e-29

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1995 (707.3 bits), Expect = 2.9e-206, P = 2.9e-206
 Identities = 397/534 (74%), Positives = 454/534 (85%)

Query:     4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSS---LVSELMAMQNDTGETA 60
             +K  +F+THQ+FFS+VRSGDL  L+ ++DNLT DE  D SS    V+ELM++QND GETA
Sbjct:     3 MKQMKFLTHQAFFSSVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETA 62

Query:    61 LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK 120
             +YISAA N +DIF  L++F  +E VKIRS+SDMN FHVAAK+GHLGI KEL+ +WPELC+
Sbjct:    63 VYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCR 122

Query:   121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
              CD+SNTSPLY+AAVQDHL++VN +LD D SC  IVRKNGKT+LHTA RYGL+ IV ALI
Sbjct:   123 ICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALI 182

Query:   181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
             ++D  IV +KDKKGQTALHMAVKG+   VVE IL AD+ ILNERD+KGNTA+HIATRK R
Sbjct:   183 EKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKAR 242

Query:   241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVD 300
             PQI SLLL++T+I+VNAINNQ+ETAMDLADKLQY +S LEI EAL EAGAKH R++G+ D
Sbjct:   243 PQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGRED 302

Query:   301 EAMELKRTVSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 360
             EA  LKR VSDIKHEV +QL+QNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA
Sbjct:   303 EARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFA 362

Query:   361 SIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWD 420
             SIAFLA+FNLPGQY   G  VG+ANIA + GFRVFCLLNATSLFISLAVVVVQITLVAWD
Sbjct:   363 SIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWD 422

Query:   421 TTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASM 480
             T AQK+VVSVVNKLMW ACACT  AFL+IAF VVG G+SWMAITITL+GAPILVGTLASM
Sbjct:   423 TRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASM 482

Query:   481 CYFVFRQRFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
             CYFVFRQRF    NDSQRRIRR S SKSFSWS YS ++SD ++  SD EKI AL
Sbjct:   483 CYFVFRQRFRS-GNDSQRRIRRGS-SKSFSWS-YSHHVSDFED-ESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 224/525 (42%), Positives = 327/525 (62%)

Query:    17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
             SAVR G+ +    +++ LTK       S +++L+  QN +GETALY++A     +I   +
Sbjct:    33 SAVRHGNKD---RVVEILTKTR----ESELNQLLGKQNQSGETALYVAAEYGDVEIVKEM 85

Query:    77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
             +   D+ +V+I++R+  + FH+AAK+G L + K L     EL  + D SNT+ L++AA Q
Sbjct:    86 INCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDLSNTTALHTAATQ 145

Query:   137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT 196
              H +VVN +L+   S   I + NGKTALH+A+R G + ++ AL+  +P I    DKKGQT
Sbjct:   146 GHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQT 205

Query:   197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN 256
             ALHMAVKG    VVE ++ AD   +N  D KGNTA+HIA RK R QIV LLL+    D  
Sbjct:   206 ALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTK 265

Query:   257 AINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEV 316
             A+N   ETA+D A+K+   +  L I +      AK  +  G  + A ELK+TVSDIKHEV
Sbjct:   266 AVNRSGETALDTAEKIGNPEVAL-ILQKHGVPSAKTIKPSGP-NPARELKQTVSDIKHEV 323

Query:   317 SAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQY-- 374
               QL     T +RV GIAK+L K+H E + N  NS TVVAVL A++AF A+F +PGQY  
Sbjct:   324 HNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVE 383

Query:   375 ----LMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSV 430
                 +  G  +G+ANIA    F +F + ++ +LFISLAVVVVQ ++V  ++ A+KQ+++V
Sbjct:   384 DTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAV 443

Query:   431 VNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFG 490
             +NKLMW AC     AFL+++F+VVG    W+AI +T +GA I++ TL +MCY++ + +  
Sbjct:   444 INKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTMCYWIIQHKI- 502

Query:   491 LFRNDSQRRIRRAS-GSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
                  + R IRR+S  S S SW +    ++D D   ++ +K+YA+
Sbjct:   503 --EAANLRNIRRSSINSISGSWGI--PQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 229/526 (43%), Positives = 330/526 (62%)

Query:    14 SFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIF 73
             S   A R+G+L  +K +I     DE       + EL++ QN  GET LY +A N    + 
Sbjct:   154 SLHIAARTGNLSKVKELIRGCG-DE-------LKELLSKQNLEGETPLYTAAENGHSIVV 205

Query:    74 SCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133
               +LK  D+E   I +R+  + FHVAAK+GHL + K L+  +P L  + D S T+ L++A
Sbjct:   206 EEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTA 265

Query:   134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKK 193
             A Q H+DVVN +L+ D +  +I + NGKTALH+AAR G + +V +LI +DP I    DKK
Sbjct:   266 ATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKK 325

Query:   194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
             GQTALHMAVKGQ   +V  ++  D  +L+  D KGNT +HIAT K R +IV  L+S+  I
Sbjct:   326 GQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGI 385

Query:   254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDE-AMELKRTVSDI 312
             ++N IN   +T +D+++K+  G++  E+   L EAGA  A+ +G+    A +LK+TVSDI
Sbjct:   386 NLNPINKAGDTPLDVSEKI--GNA--ELVSVLKEAGAATAKDLGKPQNPAKQLKQTVSDI 441

Query:   313 KHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPG 372
             KHEV +QL Q+ +T  RV  IAK L+KLH   + N  NS TVVAVL A++AF A+F +PG
Sbjct:   442 KHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPG 501

Query:   373 QY---LMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVS 429
             QY      G  +G+A+IA+K  F VF + ++ +LFISLAVVVVQ ++V  +  A+K++V 
Sbjct:   502 QYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVF 561

Query:   430 VVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRF 489
             V+NKLMW AC     AF+S++++VVG    W+A+  T++G  I++ T+ +MCY V   R 
Sbjct:   562 VINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRM 621

Query:   490 GLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEK-IYAL 534
                  +S+ R  R   SKS S+S+ S   SD D  N +  K +YAL
Sbjct:   622 ----EESKLRSIRKERSKSQSFSM-SRMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 217/527 (41%), Positives = 317/527 (60%)

Query:    18 AVRSGDLETLKNIIDNLTKD-----EAPDGSSLVSELMAMQ----NDTGETALYISAANN 68
             A + GDL ++K I+ ++           D    V+++M       N+ GET L+ +A   
Sbjct:    95 AAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSVVNEVNELGETPLFTAAEKG 154

Query:    69 FQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS 128
               D+   LL +  +E +  ++ S  +  H+A  +GH  I + L+   P+L K+   SN +
Sbjct:   155 NIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQLLLEHEPQLSKTVAQSNAT 214

Query:   129 PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
             PL SAA + H +VVN +L  D S   I R NGK ALH AAR G ++IV  L+D+DP++  
Sbjct:   215 PLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAARQGHVDIVRTLLDKDPQLAR 274

Query:   189 IKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
               DKKGQT+LHMAVKG    VV  +L AD  I+   DK GNT +HIATRK R +IV+ LL
Sbjct:   275 RTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFGNTVLHIATRKKRAEIVNELL 334

Query:   249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRT 308
                  +VNA+    +TA D+A+ L + + T EIKE L+  GA  A  + Q  +  EL++T
Sbjct:   335 QLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRCGALKANELNQPRD--ELRKT 392

Query:   309 VSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALF 368
             V++IK +V  QL Q  KTN+ V GIAKELRKLHR  + N TNS+TVVAVLFA++AF A+F
Sbjct:   393 VTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIF 452

Query:   369 NLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVV 428
              +PG    HG  V    +     F++F + NA +LF SLAVVVVQITLV  +T  +++VV
Sbjct:   453 TVPGGDDDHGVAV----MVHATSFKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVV 508

Query:   429 SVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFR-Q 487
              V+NKLMW A  CT  AF+S +++VVG  + + A+ +T++G   + G L+ M Y+V + +
Sbjct:   509 EVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVVVTVIGTVTMTGILSIMTYYVVKSK 568

Query:   488 RFGLFRNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEKIYAL 534
             R  + R   +++  R +G+ S  W  + AN S+ +   S++  IYA+
Sbjct:   569 RTRIVRKKEKKKSAR-NGTSS--W--HHANPSETE---SEVNPIYAI 607

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 224/523 (42%), Positives = 321/523 (61%)

Query:    18 AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
             A R+G+L  +  +I       A +G   + EL + QN  GET LY +A N    +   +L
Sbjct:   120 AARTGNLGKVMELI------RACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVEEML 173

Query:    78 KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
             K  D++   +++R+  + FHVAAK+GH+   K+L+  +P L  + D S T+ L++AA Q 
Sbjct:   174 KHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHTAASQG 233

Query:   138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA 197
             H DVVN +L  D    +I + NGKTALH+AAR G   +V +LI  D  I    DKKGQTA
Sbjct:   234 HTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTA 293

Query:   198 LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA 257
             LHMAVKGQ   +V  ++  D  IL+  D KGNT +H AT K R +IV  L+S+  I++NA
Sbjct:   294 LHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNA 353

Query:   258 INNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQV-DEAMELKRTVSDIKHEV 316
             +N   +TA+D+A+K+  G+   E+   L EAGA  A+ +G+  + A +L +TVSDIKHEV
Sbjct:   354 MNKAGDTALDIAEKI--GNP--ELVSVLKEAGAATAKDLGKPRNPAKQLNQTVSDIKHEV 409

Query:   317 SAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLM 376
              +QL Q+ +T  RV  IAK L+KLH   + N  NS TVVAVL A++AF A+F +PGQY  
Sbjct:   410 QSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEE 469

Query:   377 HGPE----VGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVN 432
                +    +G+A IA K  F VF + ++ +LFISLAVVVVQ ++V  +  A+K +V V+N
Sbjct:   470 DRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVIN 529

Query:   433 KLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLF 492
             KLMW AC     AF+S++F+VVG    W+AI  T++G  I++ T+ +MCY V   R    
Sbjct:   530 KLMWLACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEES 589

Query:   493 RNDSQRRIRRASGSKSFSWSVYSANMSDVDEYNSDMEK-IYAL 534
             +  S R+ R  S SKSFS S +  + S++   N +  K +YAL
Sbjct:   590 KLKSLRKER--SKSKSFSLS-HMPSESEI--LNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 212/515 (41%), Positives = 310/515 (60%)

Query:    18 AVRSGDLETLKNIIDNLTKD-----EAPDGSSLVSELMAM----QNDTGETALYISAANN 68
             A + GDL  ++ I+ ++           +  + V+E+ A      N+ GETAL+ +A   
Sbjct:    81 AAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKG 140

Query:    69 FQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS 128
               D+   LLK+   E +  ++RS  +  H+AA +GH  I + L+     L ++   SN +
Sbjct:   141 HLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNAT 200

Query:   129 PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
             PL SAA++ H +VVN +L    +   I R N K ALH AAR G + ++ AL+ +DP++  
Sbjct:   201 PLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLAR 260

Query:   189 IKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
               DKKGQTALHMAVKGQ   VV+ +L AD  I+ + DK  NTA+H+ATRK R +IV LLL
Sbjct:   261 RIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLL 320

Query:   249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRT 308
             S    + N +    +TA+D+A+ L   + +  IKE LA +GA  A  + Q  +  EL+ T
Sbjct:   321 SLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRD--ELRST 378

Query:   309 VSDIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALF 368
             V+ IK++V  QL Q ++TN+ V  I+KELRKLHRE + N TNS+TVVAVLFA++AF A+F
Sbjct:   379 VTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIF 438

Query:   369 NLPGQYLMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVV 428
              +PG         G A +  +  F++F + NA +LF SLAVVVVQITLV  +T A+K+VV
Sbjct:   439 TVPGG----DNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVV 494

Query:   429 SVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFVFRQR 488
              V+NKLMW A  CT  AFL+ +++VVG  + W A  +T++G  I+ G L +M Y+V + +
Sbjct:   495 EVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSK 554

Query:   489 FGLFRNDSQRR-IRRASGSKSFSWSVYSANMSDVD 522
                 R  S R+ ++ A  S S SW     + S+VD
Sbjct:   555 ----RTRSMRKKVKSARRSGSNSWHHSDFSNSEVD 585

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 202/484 (41%), Positives = 296/484 (61%)

Query:    17 SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
             +AVR G  + L  +I         DG  L  EL+A QN +GETALY++A   + D+   L
Sbjct:    23 TAVREGKTDLLLEMIGE------HDGVEL-KELLAEQNQSGETALYVAAEYGYTDMVKIL 75

Query:    77 LKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
             +K  D  +   ++++  + FH+AAK G+L +   L+   PEL  + DSS T+ L++AA Q
Sbjct:    76 MKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQ 135

Query:   137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT 196
              H ++V  +LD  V    I R NGKTALH+AAR G   IV  LI++   +VT  DKKGQT
Sbjct:   136 GHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQT 195

Query:   197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN 256
             ALHMAVKGQ   +V+ ++ AD  ++N  D KGNT +HIA RK R +IV  +L Y  +   
Sbjct:   196 ALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRV 255

Query:   257 AINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDE------AMELKRTVS 310
             A+N   ETA+D+A+K        EI   L + G ++AR +   ++      + +LK TVS
Sbjct:   256 AVNKSGETALDIAEKT----GLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVS 311

Query:   311 DIKHEVSAQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNL 370
             +I HEV  QL Q  +T R + GIAK + K+H E + N  NS T+VA+L A++AF A+FN+
Sbjct:   312 EIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNV 371

Query:   371 PGQY------LMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQ 424
             PGQY      +  G  +G+A  A +  F +F + ++ +LFISLAVVVVQ ++V  +  A+
Sbjct:   372 PGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAK 431

Query:   425 KQVVSVVNKLMWTACACTCAAFLSIAFMVVGNGHSWMAITITLMGAPILVGTLASMCYFV 484
             KQ+++++NKLMW AC     AF+S++F+VVG     +A+ +T +GA I+V TL +MCY+V
Sbjct:   432 KQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWV 491

Query:   485 FRQR 488
                R
Sbjct:   492 IANR 495

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 131/465 (28%), Positives = 226/465 (48%)

Query:    47 SELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLG 106
             +E M + N  G+TA  ++  NN  ++ S  +      +V+  S   M   + A  +    
Sbjct:   127 AECMKI-NKQGQTAFILACLNN--NVNSARI------LVEGTSSMTMVELNAAFSEQQQV 177

Query:   107 IAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS--CTRIVRKNGKTAL 164
             I   ++  +P L    D   ++ L+ A    +L++  T+LD DV+      V K+G T L
Sbjct:   178 IIDSILEKFPNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPL 237

Query:   165 HTAARYGLINIVTALIDRDPEIVTIKDKKG-QTALHMAVKGQCPSVVEYILSADHL--IL 221
             H A   G + I+   + + P    I  +   +T  H+A K Q      ++  + ++  +L
Sbjct:   238 HRAVINGSVEILKEFLCKAPSSFNITTQGTIETVFHLAAKYQKTKAFIFMAQSANIRQLL 297

Query:   222 NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK--LQYGDSTL 279
                D + NT +H+A       +V  +LS T+IDV   N +   A+DL DK  + +   +L
Sbjct:   298 YSLDAEDNTVLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEGVDFPLLSL 357

Query:   280 EIKEALAEAGAKHARYVGQVDEAMELKRTVSD---IKHEVSAQLIQNEKTNRRVSGIAKE 336
               ++  AE   + ARYV    E +EL R  ++   +  E  A  +  E  + R     KE
Sbjct:   358 WFRDE-AEKIQRPARYVKFAHEPVELIRNTNNGEKLSSESRAMDLLREGRDPR----NKE 412

Query:   337 LRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKVGFRVFC 396
              R++H E++QN  N+IT+VAVL AS+AF    N PG     GP +GKA     + F++F 
Sbjct:   413 -REMHSESLQNARNTITIVAVLIASVAFTCGINPPGGVHQDGPFIGKATAGRTLAFKIFS 471

Query:   397 LLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMVV-- 454
             + N  +LF SL++V + ++++++ T A K  V + +K+MW A A    A+ + A++ V  
Sbjct:   472 VANNIALFTSLSIVTLLVSIISYRTKALKMCVVIAHKMMWLAVASMATAYAASAWITVPH 531

Query:   455 GNGHSWMAITITLMGAPILVGTLASMCYFVFRQRFGLFRNDSQRR 499
               G  W+  T + + A + +G++    Y  F     + + D  RR
Sbjct:   532 NEGSKWLVYTTSAI-ASVALGSM--FVYVSFMMVKHILKKDKLRR 573

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 5.2e-36, P = 5.2e-36
 Identities = 114/414 (27%), Positives = 210/414 (50%)

Query:    84 IVKIRSRSDMNTFHVAAKKG-HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVV 142
             I++  S   +  F+     G +  IA+ ++  +P+L  + D   ++PL+ A   ++L++ 
Sbjct:   141 ILEETSSITIGEFYATFVLGEYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEIT 200

Query:   143 NTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
               +L+ D S    V K+G T LH AA    I I+    D+ P    I     +T  H+A 
Sbjct:   201 KMLLEIDESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAA 260

Query:   203 KGQCPSVVEYILSAD----HLILNERDKKGNTAVHIATRK-CRPQIVSLLLSYTSIDVNA 257
             + +  +++ +   A+    + +L++ D+ GNT +H A    C   IVS+    T+ID++A
Sbjct:   261 EHK--NILAFYFMAESPDRNNLLHQVDRYGNTVLHTAVMSSCYSVIVSITYE-TTIDLSA 317

Query:   258 INNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIKHEVS 317
              NN+   A+DL          + + +   E  +K +R++ + D A ++ R++SD  H+  
Sbjct:   318 KNNRGLKAVDL----------INVDD---EDYSKISRWL-RFD-AKQI-RSLSDPNHQQG 361

Query:   318 AQ---LIQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQY 374
              +   ++   K  +     +K   K+H EA+ N  N+IT+VAVL AS+AF    N PG  
Sbjct:   362 NKNMGVLSEYKKMQIFETPSKRESKMHAEALLNARNTITIVAVLIASVAFTCGINPPGGV 421

Query:   375 LMHGPEVGKANIADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKL 434
                GP  GK+     + F+VF + N  +LF SL +V++ ++++ + T   K  + + +++
Sbjct:   422 YQEGPYKGKSTAGRTLAFQVFSISNNIALFTSLCIVILLVSIIPYRTRPLKNFLKLTHRI 481

Query:   435 MWTACACTCAAFLSIAFMVVGN--GHSWMAITITLMGAPILVGTLASMCYFVFR 486
             +W A A    A++S A +++ +  G  W+  T+  +   +L G  A M Y V R
Sbjct:   482 LWVAVASMALAYVSAASIIIPHVEGKRWLFTTVLSISTLMLGGLFAFMTYKVIR 535

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 3.1e-29, P = 3.1e-29
 Identities = 106/452 (23%), Positives = 214/452 (47%)

Query:    48 ELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
             EL + +N+  +T L+++    F  IF    KF    IV+  +  D++  + A   G   I
Sbjct:    96 ELYSARNNKNQTPLHLA----FVSIFMEAAKF----IVEKTNSVDLDELNFALSSGSTCI 147

Query:   108 AKELVSIWPELCKSC-----DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKT 162
                ++  +PEL +       D S ++ L+ A  +  L++ + +L  +      +   G +
Sbjct:   148 VGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLNQGLEEALNSKGLS 207

Query:   163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS----VVEYILSADH 218
              LH A + G + I+   +D+ P    ++    +T  H+A + +       + E + ++  
Sbjct:   208 PLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAENLGTSSP 267

Query:   219 LILNERDKKGNTAVHIATR-KCRPQIVSLLLSYTSIDVNAINNQRETAMDL----ADKLQ 273
             ++L ++D++GNT +HIA    C   ++  ++    ID+   NN    A  L    A   +
Sbjct:   268 ILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDIRDRNNMGYRAYHLLPRQAQDYE 327

Query:   274 YGDSTLEIKEALAE-AGAKHAR----YVGQVDEAMELKRTVSDIKHEVSAQLIQNEKTNR 328
             +  S L      +E   +K A     ++G   E + L + +     E+S   I   K ++
Sbjct:   328 FISSYLRCDTKTSEEVDSKKAERNEPHIGH-SEVIRLLKLI-----EISTSEIAERKKSK 381

Query:   329 R--VSGIAKELR-KLHREAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKAN 385
             +  V    K L  ++H EA+QN  N+I +VAVL AS+++    N PG     GP  GK+ 
Sbjct:   382 KHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGVYQDGPWKGKSL 441

Query:   386 IADKVGFRVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAA 445
             + +   F+VF + N  +LF SL +V++ ++++ +     K+++   +++MW +      A
Sbjct:   442 VGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRKPLKKLLVATHRMMWVSVGFMATA 501

Query:   446 FLSIAFMVVGN--GHSWM-AITITLMGAPILV 474
             +++ + + + +  G  W+  + I++ G  + V
Sbjct:   502 YVAASLVTIPHFPGTRWLFPVIISVAGGSLTV 533

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZU96	Y2168_ARATH	No assigned EC number	0.7322	0.9868	0.9906	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-24
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (251), Expect = 3e-25
 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           + D    +PL+ AA   HL+VV  +L+           +G+T LH AA+ G + IV  L+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR 240
           ++    V  +DK G T LH+A +     VV+ +L     + N RDK G T +H+A +   
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGH 118

Query: 241 PQIVSLLL 248
            ++V LLL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           ++G+T LH AA  G + +V  L++   ++   KD  G+T LH+A K     +V+ +L   
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
             + N RDK GNT +H+A R     +V LLL +   DVNA +    T + LA
Sbjct: 64  ADV-NARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 87.2 bits (217), Expect = 1e-20
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 342 REAVQNTTNSITVVAVLFASIAFLALFNLPGQYLM--HGPEVGKANIADK-VGFRVFCLL 398
            E ++ T NS+ VVA L A++ F A F  PG Y     G   G   +A K   F+ F + 
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 399 NATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWTACACTCAAFLSIAFMV 453
           N  +   SL  V++ + +V   +    +++  +  L+W +      AF + ++ V
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLL-ALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 52  MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            +++ G T L+++A+N   ++   LL+      V  +        H+AAK GHL I K L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171
           +    ++    D    +PL+ AA   +LDVV  +L           K+G+T LH AA+ G
Sbjct: 60  LEKGADVNA-RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNG 117

Query: 172 LINIVTALI 180
            + +V  L+
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNE 223
           LH AA+ G + +V  L+++  ++         TALH+A +     +V+ +L      +N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEHGA-DVNA 56

Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN 259
           +DK GNTA+H+A R    +IV LLL +   D+N  +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHG-ADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNT-SPLYSAAVQDHLDVVNTILDADVSCTR 154
            H+AAK G+L + K L+    E     +  +T + L+ AA   +L++V  +L+       
Sbjct: 1   LHLAAKNGNLELVKLLL----EKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
              K+G TALH AAR G + IV  L++   +I
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.1 bits (150), Expect = 6e-11
 Identities = 43/182 (23%), Positives = 67/182 (36%), Gaps = 9/182 (4%)

Query: 86  KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTI 145
               +       +A           L  I      + D     PL+SAA +    +V  +
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 146 LDADVSCTRIVRKNGKTALHTAARYG-----LINIVTALIDR--DPEIVTIKDKKGQTAL 198
           L +          +G T LH AA  G      I +   L++   D ++  ++D+ G T L
Sbjct: 93  LASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL 151

Query: 199 HMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAI 258
           H A       +VE +L A     N R+  G TA+  A +  R ++V LLL          
Sbjct: 152 HWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLK 210

Query: 259 NN 260
            N
Sbjct: 211 FN 212

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.1 bits (150), Expect = 7e-11
 Identities = 52/220 (23%), Positives = 78/220 (35%), Gaps = 12/220 (5%)

Query: 89  SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY--SAAVQDHLDVVNTIL 146
           S+  ++   +  K     +   L+ +   L  S  S     LY   A +         + 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLL-LSLDLSNPSDKKLNLYLELALLPAASLSELLLK 59

Query: 147 DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV---- 202
                       +G+  LH+AA  G   IV  L+    + V  KD  G T LH+A     
Sbjct: 60  LIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGN 118

Query: 203 -KGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN 259
                  V + +L   AD  + N RD+ GNT +H A       IV LLL     D N+ N
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRN 177

Query: 260 NQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQV 299
           +   TA+D A K    +    + +             G  
Sbjct: 178 SYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVA 217

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 30/165 (18%)

Query: 120 KSCDSSNTSPLYSAAVQ--DHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLI-- 173
            + D++  +PL  A  +  +   +V  +LD  A+V    I   +G+  LH       I  
Sbjct: 100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDGENLLHLYLESNKIDL 156

Query: 174 NIVTALIDRDPEI---------------VTIKDKKGQTALHMAVKGQCPSVVEYIL--SA 216
            I+  LID+  +I               + IKD  G T LH AV    P  V+Y+L   A
Sbjct: 157 KILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216

Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQ 261
           +    N  +K G+T +HIA      +I  LLL+     +  I   
Sbjct: 217 N---PNLVNKYGDTPLHIAILNNNKEIFKLLLNNG-PSIKTIIET 257

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 10/205 (4%)

Query: 85  VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
           V I+        H A KKG L   K L     ++    D+    P++ A   +  D++  
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY-PIHIAIKHNFFDIIKL 175

Query: 145 ILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG 204
           +L+   +   +   NG++ LH AA YG    +  LID    I   K K G T LH A+  
Sbjct: 176 LLEKG-AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIH 233

Query: 205 QCPSVVEYILSADHLILNERDKKGNTAVHIATR-KCRPQIVSLLLSYTSIDVNAINNQRE 263
              S +E ++  ++  +N++D  G+T +H A    C   I+ +LL Y   D++  +N+ E
Sbjct: 234 N-RSAIELLI--NNASINDQDIDGSTPLHHAINPPCDIDIIDILL-YHKADISIKDNKGE 289

Query: 264 TAMDLADKLQYGDSTLEIKEALAEA 288
             +D A K    D    IK+ +A A
Sbjct: 290 NPIDTAFKYINKDPV--IKDIIANA 312

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
           L++  P  +   D  G T LH+A K     +V+++L    + LN RD  G TA+ +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.6 bits (123), Expect = 8e-07
 Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 38/230 (16%)

Query: 14  SFFSAVRSGDLETL---------KNIIDNLTKD------EAPDGSSLVSELMA------M 52
           S   A+R+ DLET           N ID+          +AP  S LV +L+        
Sbjct: 243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA 302

Query: 53  QNDTGETALYISAANNF--QDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
           +N  GET LY+ A N +  ++I + ++   DV       R  +   H A+    L   K+
Sbjct: 303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAA---DRLYITPLHQAST---LDRNKD 356

Query: 111 LVSIWPEL---CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167
           +V    EL     + D  + +P++ AAV++++ ++NT+LD       + +K G TALH A
Sbjct: 357 IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFA 415

Query: 168 ARYGL--INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-PSVVEYIL 214
              G      V  LIDR    V  K+K   T LH A K  C   V+E +L
Sbjct: 416 L-CGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLL 463

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 196 TALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
           TALH A       +V+Y+L     I N  D+ GNTA+HIA      +++ LLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 61  LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK 120
           L+++A N   ++   LL+        +         H+AA+ G+L I K L+    ++  
Sbjct: 1   LHLAAKNGNLELVKLLLEKG----ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTR 154
                NT  L+ AA   +L++V  +L+       
Sbjct: 57  KDKDGNT-ALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 198 LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA 257
           LH+A K     +V+ +L     + N  D   +TA+H+A R    +IV LLL +   DVNA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV-NLGDT--DTALHLAARNGNLEIVKLLLEHG-ADVNA 56

Query: 258 INNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
            +    TA+ LA   + G+  LEI + L E GA
Sbjct: 57  KDKDGNTALHLA--ARNGN--LEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 126 NTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
             + L+ AA+   L++V  +L+  V   R   ++G TALH AA  G + ++  L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 64/302 (21%), Positives = 119/302 (39%), Gaps = 47/302 (15%)

Query: 2   DSLKSFRFIT-HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSL--------------V 46
            S     FI  HQ    AV + +L+ +K+++        PD   L              +
Sbjct: 31  TSASLIPFIPLHQ----AVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGM 86

Query: 47  SELMA--MQNDTGETALYISAANNFQD--IFSCLL-----KFCDVEIVKIRSRSDMNTFH 97
            E++    +     T + I  A N ++  IF  +L         +++V I  +S  +   
Sbjct: 87  KEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIE 146

Query: 98  VAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL--DADVSCTRI 155
                    I K L+S   ++         + L+ A       +   +L   A+V+   I
Sbjct: 147 AE-------ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN---I 196

Query: 156 VRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS--VVEYI 213
             K   + LH A ++    IV  L+  +      +DK G T LH++V G C    +++ +
Sbjct: 197 PDKTNNSPLHHAVKHYNKPIVHILL-ENGASTDARDKCGNTPLHISV-GYCKDYDILKLL 254

Query: 214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQ 273
           L     +  +    G TA+H + +    + + LLL Y + D+N++N+ + T +  A K  
Sbjct: 255 LEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGA-DINSLNSYKLTPLSSAVKQY 311

Query: 274 YG 275
             
Sbjct: 312 LC 313

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 12/197 (6%)

Query: 45  LVSELMAMQNDTGETALYISAANNFQDIFS-CLLKFCDVEIVKIRSRSDMNTFHVAAKKG 103
           L+  L        +  LY+  A       S  LLK      +  R        H AA KG
Sbjct: 25  LLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKG 84

Query: 104 HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHL-----DVVNTILDADVSCTRIVRK 158
              I K L++   ++  + D+   +PL+ AA+  +      +V   +L+A         +
Sbjct: 85  DDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR 143

Query: 159 N--GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
           +  G T LH AA  G  +IV  L++   +    ++  G TAL  A K     +V+ +L  
Sbjct: 144 DEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLL-- 200

Query: 217 DHLILNERDKKGNTAVH 233
           D  +     K     V 
Sbjct: 201 DKGLHLSLLKFNLEGVA 217

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 222 NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEI 281
           N RD+ G T +H+A      ++V LLL     DVNA +N   T + LA   + G   LEI
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLA--AKNGH--LEI 55

Query: 282 KEALAEAGA 290
            + L E GA
Sbjct: 56  VKLLLEKGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 17/102 (16%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A ++G+LE +K +++         G+ +         DT  TAL+++A N   +I   LL
Sbjct: 4   AAKNGNLELVKLLLEK--------GADV------NLGDTD-TALHLAARNGNLEIVKLLL 48

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC 119
           +      V  + +      H+AA+ G+L I K L+    ++ 
Sbjct: 49  EHGAD--VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 145 ILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA 201
           +L+           NG T LH AA+YG + +V  L+    ++  ++D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 21/210 (10%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A++ GDLE++K + +                 + +++D G   ++I+  +NF DI   LL
Sbjct: 131 AIKKGDLESIKMLFEYGAD-------------VNIEDDNGCYPIHIAIKHNFFDIIKLLL 177

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
           +        ++  +  +  H AA+ G     K L+     +   C +  T PL++A + +
Sbjct: 178 E--KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT-PLHNAIIHN 234

Query: 138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL-INIVTALIDRDPEIVTIKDKKGQT 196
              +   I +A ++   I   +G T LH A      I+I+  L+    +I +IKD KG+ 
Sbjct: 235 RSAIELLINNASINDQDI---DGSTPLHHAINPPCDIDIIDILLYHKADI-SIKDNKGEN 290

Query: 197 ALHMAVKGQCPSVVEYILSADHLILNERDK 226
            +  A K      V   + A+ +++ E DK
Sbjct: 291 PIDTAFKYINKDPVIKDIIANAVLIKEADK 320

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 162 TALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
           TALH AA  G + +V  L+++  +I    D+ G TALH+A +     V++ +L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 213 ILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           +L    + LN  D  GNT +H+A +    ++V  LL    +D+N  ++   TA+DLA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 139 LDVVNTIL--DADVSCTRIVRKNGKTALHTAARYGLIN---IVTALIDRDPEIVTIKDKK 193
           ++ V  +L   ADV+        GKT LH    Y       IV  L++   ++    ++ 
Sbjct: 27  VEEVRRLLAAGADVNFRGEY---GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA-PERC 82

Query: 194 GQTALHMAVKGQC-PSVVEYILS--ADHLILNERDKKGNTAVHI-ATRKC-RPQIVSLLL 248
           G T LH+ +       V++ ++   AD   +N +DK G T +H+  +     P+++ LLL
Sbjct: 83  GFTPLHLYLYNATTLDVIKLLIKAGAD---VNAKDKVGRTPLHVYLSGFNINPKVIRLLL 139

Query: 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
                DVNA++    T + +   L+  ++ +E+   L +AGA 
Sbjct: 140 RK-GADVNALDLYGMTPLAVL--LKSRNANVELLRLLIDAGAD 179

Length = 471

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 143 NTILDADVSCTRIVRKNGKTALHTAARYGLIN---IVTALIDRDPEIVTIKDKKGQTALH 199
           N     ++    I      T      R G I     V   I  D  ++   D  G+   H
Sbjct: 4   NGTAGNNLGAVEIDEDEQNT-FLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTH 62

Query: 200 MAVKGQCPSVVEYI-----LSADHLILNERDKK-GNTAVHIATRKCRPQIVSLLLSYTSI 253
           M       + V  I     + AD   +N R+   GNT +HIA      ++   L     +
Sbjct: 63  MVAWYDRANAVMKIELLVNMGAD---INARELGTGNTLLHIAASTKNYELAEWLCRQLGV 119

Query: 254 DVNAINNQRETAMDLADKLQ 273
           ++ AIN Q ETA  +A K++
Sbjct: 120 NLGAINYQHETAYHIAYKMR 139

Length = 166

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
            GNT +H+A R    ++V LLL     DVNA + 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA-GADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDK 192
           +G T LH AAR G + +V  L++   + V  +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD-VNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.62
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.44
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.35
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.22
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.22
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.22
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.21
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.21
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.16
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.64
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.61
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.5
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.36
PF13606	30	Ank_3: Ankyrin repeat	98.35
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.23
PF13606	30	Ank_3: Ankyrin repeat	98.22
KOG0522	560	consensus Ankyrin repeat protein [General function	98.2
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.17
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.16
KOG0522	560	consensus Ankyrin repeat protein [General function	98.13
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.08
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.82
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.78
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.78
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.66
KOG0511	516	consensus Ankyrin repeat protein [General function	97.62
KOG0511	516	consensus Ankyrin repeat protein [General function	97.48
KOG2384	223	consensus Major histocompatibility complex protein	97.43
KOG2384	223	consensus Major histocompatibility complex protein	97.29
KOG2505	591	consensus Ankyrin repeat protein [General function	95.94
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.49
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.33
KOG2505	591	consensus Ankyrin repeat protein [General function	94.49
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.28
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.65
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.87
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.76
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	86.36
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.78
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	82.6

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-37  Score=325.54  Aligned_cols=264  Identities=24%  Similarity=0.294  Sum_probs=229.8

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh--
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDV--   82 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~--   82 (534)
                      +..+..|.||||.|++.|+.++|++|++.+++             ++..+..|.||||.|+..|+.+++++|++.+..  
T Consensus        29 n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-------------~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~   95 (434)
T PHA02874         29 NISVDETTTPLIDAIRSGDAKIVELFIKHGAD-------------INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS   95 (434)
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            34567889999999999999999999999876             346778899999999999999999999987521  


Q ss_pred             -------------------hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHH
Q 009457           83 -------------------EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVN  143 (534)
Q Consensus        83 -------------------~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~  143 (534)
                                         .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.++++
T Consensus        96 ~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~  174 (434)
T PHA02874         96 ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIK  174 (434)
T ss_pred             cchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHH
Confidence                               124556788999999999999999999999999988 678999999999999999999999


Q ss_pred             HHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCcccccc
Q 009457          144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNE  223 (534)
Q Consensus       144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~  223 (534)
                      +|++.+++ .+..+..|.||||+|+..|+.+++++|++.+++ ++.++..|.||||.|+..+. +++++|+.  +..++.
T Consensus       175 ~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~  249 (434)
T PHA02874        175 LLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN--NASIND  249 (434)
T ss_pred             HHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCC
Confidence            99999987 567889999999999999999999999999998 47888999999999999865 56677764  456799


Q ss_pred             ccCCCChHHHHHHHcC-CHHHHHHHhccCCccccccccCCCCHHHHHHHccCC-CCHHHHHHHHHHcCCcc
Q 009457          224 RDKKGNTAVHIATRKC-RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG-DSTLEIKEALAEAGAKH  292 (534)
Q Consensus       224 ~d~~g~T~Lh~A~~~~-~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~-~~~~~i~~~L~~~ga~~  292 (534)
                      +|.+|+||||+|+..+ +.+++++|+++ |++++.+|..|+||||+|++  ++ ..  ++++.|+..++..
T Consensus       250 ~d~~G~TpLh~A~~~~~~~~iv~~Ll~~-gad~n~~d~~g~TpL~~A~~--~~~~~--~~ik~ll~~~~~~  315 (434)
T PHA02874        250 QDIDGSTPLHHAINPPCDIDIIDILLYH-KADISIKDNKGENPIDTAFK--YINKD--PVIKDIIANAVLI  315 (434)
T ss_pred             cCCCCCCHHHHHHhcCCcHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHH--hCCcc--HHHHHHHHhcCch
Confidence            9999999999999875 78999999994 99999999999999999998  54 33  6778888877654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-38  Score=334.04  Aligned_cols=265  Identities=21%  Similarity=0.273  Sum_probs=244.7

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHH-----HHHcCCHHHHHHHHhc
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYI-----SAANNFQDIFSCLLKF   79 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~-----Aa~~g~~~iv~~Ll~~   79 (534)
                      ...+.++.||||.|++.|+.++|+.|++.+.+.             +..+..|.||||+     |+..|+.+++++|++.
T Consensus        29 ~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~-------------~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~   95 (480)
T PHA03100         29 DYSYKKPVLPLYLAKEARNIDVVKILLDNGADI-------------NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY   95 (480)
T ss_pred             hhhhcccchhhhhhhccCCHHHHHHHHHcCCCC-------------CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC
Confidence            445778999999999999999999999998763             4567789999999     9999999999999998


Q ss_pred             CChhhhhccCCCCCcHHHHHH--HcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccc
Q 009457           80 CDVEIVKIRSRSDMNTFHVAA--KKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD--HLDVVNTILDADVSCTRI  155 (534)
Q Consensus        80 ~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~  155 (534)
                      +  .+++..+..|.||||+|+  ..|+.+++++|+++++++ +..|..|.||||+|+..|  +.+++++|++.|++ .+.
T Consensus        96 g--a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~  171 (480)
T PHA03100         96 G--ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INA  171 (480)
T ss_pred             C--CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-ccc
Confidence            7  456788999999999999  999999999999999988 678999999999999999  99999999999998 667


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCC------chHHHHHHhCCC--HHHHHHhHhcCccccccccCC
Q 009457          156 VRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG------QTALHMAVKGQC--PSVVEYILSADHLILNERDKK  227 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~iv~~Ll~~~~~~in~~d~~  227 (534)
                      +|..|.||||+|+..|+.+++++|++.+++ ++..+..|      .||||.|+..++  .+++++|++. +.++|.+|..
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~  249 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY-GVPINIKDVY  249 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc-CCCCCCCCCC
Confidence            888999999999999999999999999998 47788888      899999999999  9999999996 5677999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccc
Q 009457          228 GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHA  293 (534)
Q Consensus       228 g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~  293 (534)
                      |.||||+|+..++.+++++|++. |++++.+|..|.||+|+|+.  .++.  +++++|++.|++..
T Consensus       250 g~TpL~~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpl~~A~~--~~~~--~iv~~Ll~~g~~i~  310 (480)
T PHA03100        250 GFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAIL--NNNK--EIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHH--hCCH--HHHHHHHhcCCCHH
Confidence            99999999999999999999995 89999999999999999998  6666  99999999999764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-37  Score=320.40  Aligned_cols=272  Identities=18%  Similarity=0.211  Sum_probs=239.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      ..|+.|+..|+++.++.+++..+..            ++..+..|.||||.|++.|+.++|++|++.|  .+++..+..|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~------------~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~n~~~~~~   68 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNC------------INISVDETTTPLIDAIRSGDAKIVELFIKHG--ADINHINTKI   68 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCC
Confidence            4789999999999999999876542            4567788999999999999999999999987  5667788899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccc----------------------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPEL----------------------CKSCDSSNTSPLYSAAVQDHLDVVNTILDADV  150 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l----------------------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~  150 (534)
                      .||||.|+..|+.+++++|++++++.                      .+..|..|.||||+|+..|+.+++++|++.++
T Consensus        69 ~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga  148 (434)
T PHA02874         69 PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA  148 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC
Confidence            99999999999999999999887643                      24568899999999999999999999999998


Q ss_pred             CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCCh
Q 009457          151 SCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNT  230 (534)
Q Consensus       151 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T  230 (534)
                      + .+.+|..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++. +..++.++..|.|
T Consensus       149 d-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-g~~i~~~~~~g~T  225 (434)
T PHA02874        149 D-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFT  225 (434)
T ss_pred             C-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCC
Confidence            8 678899999999999999999999999999988 588899999999999999999999999996 4556889999999


Q ss_pred             HHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457          231 AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR  307 (534)
Q Consensus       231 ~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  307 (534)
                      |||+|+..+. +.+++|+.  |++++.+|.+|.||||+|+.  .+. ..+++++|++.|++.......+.+++.+..
T Consensus       226 pL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~--~~~-~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        226 PLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAIN--PPC-DIDIIDILLYHKADISIKDNKGENPIDTAF  296 (434)
T ss_pred             HHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHh--cCC-cHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            9999999865 56677764  78999999999999999997  432 238999999999999888888777776653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-37  Score=324.69  Aligned_cols=263  Identities=18%  Similarity=0.205  Sum_probs=237.2

Q ss_pred             cCCCCCChHHHHHHHcC---CHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcC-CHHHHHHHHhcCC
Q 009457            6 SFRFITHQSFFSAVRSG---DLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN-FQDIFSCLLKFCD   81 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G---~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g-~~~iv~~Ll~~~~   81 (534)
                      ..+..|.||||.|++.|   +.++++.|++.+.+             ++.++..|.||||+|+..| +.+++++|++++ 
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-------------in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g-  107 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-------------VNAPERCGFTPLHLYLYNATTLDVIKLLIKAG-  107 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-------------CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC-
Confidence            45778999999999999   99999999999886             4567789999999999999 599999999987 


Q ss_pred             hhhhhccCCCCCcHHHHHH--HcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccc
Q 009457           82 VEIVKIRSRSDMNTFHVAA--KKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD--HLDVVNTILDADVSCTRIVR  157 (534)
Q Consensus        82 ~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d  157 (534)
                       .+++..+..|+||||+|+  ..++.+++++|+++++++ +..|..|.||||+|+..+  +.+++++|++.+++... .|
T Consensus       108 -a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d  184 (471)
T PHA03095        108 -ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VD  184 (471)
T ss_pred             -CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cC
Confidence             567888999999999999  567899999999999998 678999999999998876  68999999999998544 59


Q ss_pred             cCCCcHHHHHHHc--CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCH--HHHHHhHhcCccccccccCCCChHHH
Q 009457          158 KNGKTALHTAARY--GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP--SVVEYILSADHLILNERDKKGNTAVH  233 (534)
Q Consensus       158 ~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~--~iv~~Ll~~~~~~in~~d~~g~T~Lh  233 (534)
                      ..|.||||+|+..  ++.++++.|++.+.+ ++.+|..|+||||+|+..|+.  .+++.|++. +.++|.+|..|+||||
T Consensus       185 ~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~-g~din~~d~~g~TpLh  262 (471)
T PHA03095        185 DRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPLH  262 (471)
T ss_pred             CCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHc-CCCCCCcCCCCCCHHH
Confidence            9999999999875  788999999999999 689999999999999999875  578888875 6678999999999999


Q ss_pred             HHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          234 IATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       234 ~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                      +|+..|+.+++++|++. |++++.+|.+|.||||+|+.  .++.  ++++.|++.|++.
T Consensus       263 ~A~~~~~~~~v~~LL~~-gad~n~~~~~g~tpl~~A~~--~~~~--~~v~~LL~~~~~~  316 (471)
T PHA03095        263 YAAVFNNPRACRRLIAL-GADINAVSSDGNTPLSLMVR--NNNG--RAVRAALAKNPSA  316 (471)
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH--hCCH--HHHHHHHHhCCCH
Confidence            99999999999999995 99999999999999999998  7777  9999999998876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.7e-37  Score=326.21  Aligned_cols=265  Identities=14%  Similarity=0.130  Sum_probs=225.1

Q ss_pred             CCCCChHHHHHHH--cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCC--HHHHHHHHhcCChh
Q 009457            8 RFITHQSFFSAVR--SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNF--QDIFSCLLKFCDVE   83 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~--~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~--~~iv~~Ll~~~~~~   83 (534)
                      +..|.||||.|+.  .|+.++++.|++++.+             ++.+|..|.||||+|+..|+  .++|+.|+++|  .
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-------------VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G--A  238 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVN-------------VNLQNNHLITPLHTYLITGNVCASVIKKIIELG--G  238 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-------------CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC--C
Confidence            7789999999865  4689999999999876             46788999999999999995  59999999998  6


Q ss_pred             hhhccCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhhCccccccCCCCC
Q 009457           84 IVKIRSRSDMNTFHVA-------------------------------------AKKGHLGIAKELVSIWPELCKSCDSSN  126 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~A-------------------------------------a~~g~~~iv~~Ll~~~~~l~~~~d~~g  126 (534)
                      +++.++..|.||||.|                                     ++.|+.+++++|++.++++ +..|..|
T Consensus       239 DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G  317 (764)
T PHA02716        239 DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAG  317 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCC
Confidence            7888999999999975                                     4557889999999999997 6789999


Q ss_pred             CcHHHHHHH--cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH--------------cCCHHHHHHHHhcCCccceec
Q 009457          127 TSPLYSAAV--QDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR--------------YGLINIVTALIDRDPEIVTIK  190 (534)
Q Consensus       127 ~tpLh~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--------------~g~~~iv~~Ll~~~~~~~~~~  190 (534)
                      .||||+|+.  .++.+++++|++.|++ .+.+|..|+||||+|+.              .++.+++++|+++|++ ++.+
T Consensus       318 ~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~k  395 (764)
T PHA02716        318 RTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAV  395 (764)
T ss_pred             CCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCc
Confidence            999999874  4689999999999988 67899999999999875              3789999999999999 5899


Q ss_pred             CCCCchHHHH----HHhCCCHHHHHHhHhcCc------------------------------------------------
Q 009457          191 DKKGQTALHM----AVKGQCPSVVEYILSADH------------------------------------------------  218 (534)
Q Consensus       191 d~~g~t~Lh~----A~~~g~~~iv~~Ll~~~~------------------------------------------------  218 (534)
                      |..|+||||.    |...++.+++++|++.+.                                                
T Consensus       396 n~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~  475 (764)
T PHA02716        396 NCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTK  475 (764)
T ss_pred             CCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccc
Confidence            9999999994    233567888888876421                                                


Q ss_pred             ------------cccccccCCCChHHHHHHHcCCH-----HHHHHHhccCCccccccccCCCCHHHHHHHccCCCC---H
Q 009457          219 ------------LILNERDKKGNTAVHIATRKCRP-----QIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS---T  278 (534)
Q Consensus       219 ------------~~in~~d~~g~T~Lh~A~~~~~~-----~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~---~  278 (534)
                                  ..+|.+|..|+||||+|+..|+.     +++++|++. |+++|.+|++|+||||+|++  .++.   .
T Consensus       476 ~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~-GADIN~~d~~G~TPLh~A~~--~g~~~~~~  552 (764)
T PHA02716        476 IHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI-QYNINIPTKNGVTPLMLTMR--NNRLSGHQ  552 (764)
T ss_pred             cchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC-CCCCcccCCCCCCHHHHHHH--cCCccccH
Confidence                        01245578899999999999876     455999995 99999999999999999998  5532   5


Q ss_pred             HHHHHHHHHcCCccc
Q 009457          279 LEIKEALAEAGAKHA  293 (534)
Q Consensus       279 ~~i~~~L~~~ga~~~  293 (534)
                      .++++.|++.|++..
T Consensus       553 ~eIvk~LL~~ga~~~  567 (764)
T PHA02716        553 WYIVKNILDKRPNVD  567 (764)
T ss_pred             HHHHHHHHhcCCCcc
Confidence            599999999998764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=317.48  Aligned_cols=291  Identities=21%  Similarity=0.228  Sum_probs=243.5

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCC--c------------chHHHH------HhcccCCCCcHHHHH
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDG--S------------SLVSEL------MAMQNDTGETALYIS   64 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~--~------------~~~~~l------l~~~n~~g~T~L~~A   64 (534)
                      ...|..|+||||.|+....++.++.|++.+.+.+..+.  .            +.++.+      ++..++.|.||||+|
T Consensus        82 ~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A  161 (929)
T KOG0510|consen   82 YAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLA  161 (929)
T ss_pred             hhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHH
Confidence            34567788888888888888888888888776542211  0            111222      456678889999999


Q ss_pred             HHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHh-----hCccccccCCCCCCcHHHHHHHcCCH
Q 009457           65 AANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS-----IWPELCKSCDSSNTSPLYSAAVQDHL  139 (534)
Q Consensus        65 a~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~-----~~~~l~~~~d~~g~tpLh~Aa~~g~~  139 (534)
                      |..++.|..+.|++.+  .++...|.+|++|+|.|++.|..++.+.++.     +...+ +..|..|.||||.|+..|+.
T Consensus       162 ~~~~~~E~~k~Li~~~--a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~  238 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKG--ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDI  238 (929)
T ss_pred             HhcChHHHHHHHHhcC--CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCH
Confidence            9999999888888877  5667788899999999999999999999988     33334 56688899999999999999


Q ss_pred             HHHHHHHhcCCCc--------------ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCC
Q 009457          140 DVVNTILDADVSC--------------TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ  205 (534)
Q Consensus       140 ~~v~~Ll~~~~~~--------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  205 (534)
                      ++++.+|+.+...              .+..|++|.||||+|++.|+.+.++.|+..|+++ +.++.++.||||.||.+|
T Consensus       239 e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg  317 (929)
T KOG0510|consen  239 EMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYG  317 (929)
T ss_pred             HHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcc
Confidence            9999999876543              2346889999999999999999999999999995 999999999999999999


Q ss_pred             CHHHHHHhHh-cCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcccc---ccccCCCCHHHHHHHccCCCCHHHH
Q 009457          206 CPSVVEYILS-ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN---AINNQRETAMDLADKLQYGDSTLEI  281 (534)
Q Consensus       206 ~~~iv~~Ll~-~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~---~~n~~g~t~L~lA~~~~~~~~~~~i  281 (534)
                      +.+.++.|++ .+-.++|..|..|+||||+|++.|+.+++++|++. |++..   ..|.+|+||||+|+.  +|+.  .+
T Consensus       318 ~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~dg~TaLH~Aa~--~g~~--~a  392 (929)
T KOG0510|consen  318 RINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSDGNTALHLAAK--YGNT--SA  392 (929)
T ss_pred             cHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccCCchhhhHHHH--hccH--HH
Confidence            9999999999 56668899999999999999999999999999995 77655   459999999999999  8988  99


Q ss_pred             HHHHHHcCCccccccCChhhHHH
Q 009457          282 KEALAEAGAKHARYVGQVDEAME  304 (534)
Q Consensus       282 ~~~L~~~ga~~~~~~~~~~~~~~  304 (534)
                      ++.|+..||+...+++.+.++..
T Consensus       393 v~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  393 VQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             HHHHHHcCCceeecccccccccc
Confidence            99999999999776666555544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=315.63  Aligned_cols=254  Identities=17%  Similarity=0.204  Sum_probs=150.8

Q ss_pred             ChHHHHHHH--cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457           12 HQSFFSAVR--SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS   89 (534)
Q Consensus        12 ~t~Lh~Aa~--~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   89 (534)
                      .++||.++.  .++.++++.|++.+.+             ++.+|.+|.||||+|+..|+.++|++|++++  .+++.+|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gad-------------vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d  102 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYS-------------PNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACD  102 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCC-------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCC
Confidence            466665542  3355666666666654             2445666666666666666666666666665  4455566


Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           90 RSDMNTFHVAAKKG--HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g--~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      ..|+||||+|+..+  +.+++++|+++++++....|..|.|||| |+..|+.+++++|++.+++ .+..|..|+||||+|
T Consensus       103 ~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A  180 (446)
T PHA02946        103 KQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRH  180 (446)
T ss_pred             CCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHH
Confidence            66666666666544  3566666666666664445666666665 4445666666666666655 455666666666666


Q ss_pred             HHcC--CHHHHHHHHhcCCccceecCCCCchHHHHHHhCC--CHHHHHHhHhcCccccccccCCCChHHHHHHHcCC-HH
Q 009457          168 ARYG--LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ--CPSVVEYILSADHLILNERDKKGNTAVHIATRKCR-PQ  242 (534)
Q Consensus       168 ~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~-~~  242 (534)
                      +..+  +.+++++|++.+++ ++.+|..|+||||+|+.++  +.+++++|+.  +.++|.+|.+|.||||+|+..++ .+
T Consensus       181 ~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~  257 (446)
T PHA02946        181 LMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAH  257 (446)
T ss_pred             HHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHH
Confidence            5543  34666666666666 3666666666666666654  5566666653  34556666666666666666655 35


Q ss_pred             HHHHHhccCCccc--------------------ccc-ccCCCCHHHHHHHccCCCCHHHHHHHHHHcCC
Q 009457          243 IVSLLLSYTSIDV--------------------NAI-NNQRETAMDLADKLQYGDSTLEIKEALAEAGA  290 (534)
Q Consensus       243 iv~~Ll~~~g~~~--------------------~~~-n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga  290 (534)
                      ++++|++. |.++                    +.. +..|+||||+|+.  .++.  +++++|++.|+
T Consensus       258 ~~~~Ll~~-g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~--~g~~--eivk~Ll~~~~  321 (446)
T PHA02946        258 LINKLLST-SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVE--VGSI--RCVKYLLDNDI  321 (446)
T ss_pred             HHHHHHhC-CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHH--cCCH--HHHHHHHHCCC
Confidence            66666653 3221                    111 1235566666666  5554  66666666654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=293.07  Aligned_cols=235  Identities=17%  Similarity=0.184  Sum_probs=206.4

Q ss_pred             cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHH
Q 009457           21 SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAA  100 (534)
Q Consensus        21 ~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  100 (534)
                      .++.+++++|+++++.               .+|.+|.||||+|+..|+.++++.|++.+.  +.+.  .+|.||||+|+
T Consensus         9 ~~~~~~~~~Lis~~a~---------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga--~~n~--~d~~TpLh~Aa   69 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---------------KADVHGHSALYYAIADNNVRLVCTLLNAGA--LKNL--LENEFPLHQAA   69 (284)
T ss_pred             cCHHHHHHHHHhCCCC---------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcC--CCcC--CCCCCHHHHHH
Confidence            4678899999997653               468899999999999999999999999873  3333  35799999999


Q ss_pred             HcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-cHHHHHHHcCCHHHHHHH
Q 009457          101 KKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGK-TALHTAARYGLINIVTAL  179 (534)
Q Consensus       101 ~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g~~~iv~~L  179 (534)
                      ..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.++..|+ ||||+|+..|+.+++++|
T Consensus        70 ~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~L  147 (284)
T PHA02791         70 TLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYF  147 (284)
T ss_pred             HCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHH
Confidence            999999999999999988 67899999999999999999999999999988 456777774 899999999999999999


Q ss_pred             HhcCCccceecC-CCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH-HHHHHHcCCHHHHHHHhccCCccccc
Q 009457          180 IDRDPEIVTIKD-KKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA-VHIATRKCRPQIVSLLLSYTSIDVNA  257 (534)
Q Consensus       180 l~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~-Lh~A~~~~~~~iv~~Ll~~~g~~~~~  257 (534)
                      ++.+++.   .| ..|.||||+|+++|+.+++++|+++ +.++|.+|..|.|| ||+|+..|+.+++++|+++ |+++|.
T Consensus       148 L~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~  222 (284)
T PHA02791        148 LSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYS  222 (284)
T ss_pred             HhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCcc
Confidence            9988753   23 3589999999999999999999997 55679999999987 9999999999999999995 999999


Q ss_pred             cccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          258 INNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       258 ~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                      +|.+| |+|+.+          |++++|++..++.
T Consensus       223 ~~~~~-~~l~~~----------e~~~~ll~~~~~~  246 (284)
T PHA02791        223 VNLEN-VLLDDA----------EIAKMIIEKHVEY  246 (284)
T ss_pred             CcccC-ccCCCH----------HHHHHHHHhhhhh
Confidence            99955 776443          8999999988765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=328.46  Aligned_cols=281  Identities=16%  Similarity=0.153  Sum_probs=229.4

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh---
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDV---   82 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~---   82 (534)
                      ..|..|.||||+|++.|+.++|+.|++.+++.             +..+..|.||||+|+..|+.++++.|++.+..   
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-------------n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~  239 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVNLLLSYGADV-------------NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK  239 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-------------CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence            46778999999999999999999999998763             44567778888888888888888777754311   


Q ss_pred             ------------------------hhhhccCCCCCcHHHHHHHcCCH-HHHHHHHhhCccccccCCCCCCcHHHHHHHcC
Q 009457           83 ------------------------EIVKIRSRSDMNTFHVAAKKGHL-GIAKELVSIWPELCKSCDSSNTSPLYSAAVQD  137 (534)
Q Consensus        83 ------------------------~~~~~~~~~g~t~Lh~Aa~~g~~-~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g  137 (534)
                                              .+++..+..|.||||+|+..|+. +++++|++.++++ +..|..|.||||+|+..|
T Consensus       240 ~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g  318 (682)
T PHA02876        240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNG  318 (682)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhC
Confidence                                    12445567789999999998886 5888899988887 677889999999999988


Q ss_pred             -CHHHHHHHHhcCCCcccccccCCCcHHHHHHHc-CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457          138 -HLDVVNTILDADVSCTRIVRKNGKTALHTAARY-GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       138 -~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                       +.++++.|+..+++ .+..|..|.||||+|+.. ++.++++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++
T Consensus       319 ~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~  396 (682)
T PHA02876        319 YDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLD  396 (682)
T ss_pred             CCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             58899999998888 667888999999999885 578888889998888 58889999999999999999999999998


Q ss_pred             cCccccccccCCCChHHHHHHHcCC-HHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457          216 ADHLILNERDKKGNTAVHIATRKCR-PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR  294 (534)
Q Consensus       216 ~~~~~in~~d~~g~T~Lh~A~~~~~-~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~  294 (534)
                      . +.+++..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+||||+|+.  .+. ..+++++|++.|++...
T Consensus       397 ~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~--~~~-~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        397 Y-GADIEALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACK--KNC-KLDVIEMLLDNGADVNA  471 (682)
T ss_pred             C-CCCccccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHH--hCC-cHHHHHHHHHCCCCCCC
Confidence            6 45568888899999999987665 456788888 489999999999999999987  332 23889999999998887


Q ss_pred             ccCChhhHHHHhh
Q 009457          295 YVGQVDEAMELKR  307 (534)
Q Consensus       295 ~~~~~~~~~~~~~  307 (534)
                      .+..+.+++.+..
T Consensus       472 ~d~~g~tpl~~a~  484 (682)
T PHA02876        472 INIQNQYPLLIAL  484 (682)
T ss_pred             CCCCCCCHHHHHH
Confidence            7777777766543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=308.46  Aligned_cols=242  Identities=19%  Similarity=0.242  Sum_probs=220.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      .+++||.|++.|+.++++.|++.+.+.             +..+..|.||||+|+..|+.+++++|++.+  .+.+..+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~-------------n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~   66 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINP-------------NFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYP   66 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCC-------------CccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCC
Confidence            579999999999999999999998763             456778999999999999999999999997  44566778


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY  170 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  170 (534)
                      .+.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~  145 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMM  145 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHc
Confidence            8999999999999999999999999888777788999999999999999999999999998 678899999999999999


Q ss_pred             CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCC-hHHHHHHHcCCHHHHHHHhc
Q 009457          171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGN-TAVHIATRKCRPQIVSLLLS  249 (534)
Q Consensus       171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~-T~Lh~A~~~~~~~iv~~Ll~  249 (534)
                      |+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++..+..|. ||+|+|+..++.+++++|++
T Consensus       146 ~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        146 GDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            999999999999998 588999999999999999999999999997 556688888775 89999999999999999999


Q ss_pred             cCCcccccc---ccCCCCHHHHHHH
Q 009457          250 YTSIDVNAI---NNQRETAMDLADK  271 (534)
Q Consensus       250 ~~g~~~~~~---n~~g~t~L~lA~~  271 (534)
                      + |++++..   +.++.||++++..
T Consensus       224 ~-gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        224 R-GADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             C-CcCcchHhhcCCCchHHHHHHHh
Confidence            5 9998865   6789999998875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-35  Score=299.28  Aligned_cols=249  Identities=25%  Similarity=0.325  Sum_probs=223.5

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcC---C
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFC---D   81 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~---~   81 (534)
                      +..|..|.||||.||+.++.|..+.|++.++++             .+.|.+|.+|+|.|++.|..|+.+..+.+.   .
T Consensus       148 nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-------------~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r  214 (929)
T KOG0510|consen  148 NLEDENGFTPLHLAARKNKVEAKKELINKGADP-------------CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYER  214 (929)
T ss_pred             cccccCCCchhhHHHhcChHHHHHHHHhcCCCC-------------CcccCcCCchHHHHHHhcchhhhhhhhccccchh
Confidence            346788889999999999999888888888764             467899999999999999999999999832   2


Q ss_pred             hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcc--------------ccccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 009457           82 VEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPE--------------LCKSCDSSNTSPLYSAAVQDHLDVVNTILD  147 (534)
Q Consensus        82 ~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~--------------l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~  147 (534)
                      ...++..+..|.||||.|+..|+.++++.+++.+..              +++..|.+|.||||+|++.|+.+.++.|+.
T Consensus       215 ~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~  294 (929)
T KOG0510|consen  215 QTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLG  294 (929)
T ss_pred             hcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHH
Confidence            345778889999999999999999999999997654              345668999999999999999999999999


Q ss_pred             cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh-cCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccc--cc
Q 009457          148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALID-RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILN--ER  224 (534)
Q Consensus       148 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in--~~  224 (534)
                      .|++ ++.++.++.||||.|++.|+.+.|+.|++ .+..+.+..|-.|.||||+|++.|+..+++.|++.+....+  ..
T Consensus       295 ~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~  373 (929)
T KOG0510|consen  295 FGAS-INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEA  373 (929)
T ss_pred             cCCc-ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccc
Confidence            9999 67899999999999999999999999999 56556788899999999999999999999999998766665  56


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHH
Q 009457          225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDL  268 (534)
Q Consensus       225 d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~l  268 (534)
                      |.+|+||||.|+..|+..+|+.|+.+ |+++..+|..|.+++|+
T Consensus       374 D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  374 DSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             ccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence            99999999999999999999999996 99999999999999995

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.8e-36  Score=328.33  Aligned_cols=245  Identities=20%  Similarity=0.244  Sum_probs=153.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccc--------------
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL--------------  118 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l--------------  118 (534)
                      +|..|.||||+|++.|+.++|++|+++|  .+.+..+..|.||||.|+..|+.++++.|++.++++              
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~G--ad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~  251 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSYG--ADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNE  251 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCC--CCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcC
Confidence            3455666666666666666666666665  444555666666666666666666666666554432              


Q ss_pred             --------------cccCCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCcccccccCCCcHHHHHHHcC-CHHHHHHHHhc
Q 009457          119 --------------CKSCDSSNTSPLYSAAVQDHL-DVVNTILDADVSCTRIVRKNGKTALHTAARYG-LINIVTALIDR  182 (534)
Q Consensus       119 --------------~~~~d~~g~tpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~iv~~Ll~~  182 (534)
                                    .+..|..|.||||+|+..|+. +++++|++.+++ .+..|.+|.||||+|+..| +.++++.|++.
T Consensus       252 ~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~  330 (682)
T PHA02876        252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD-VNAKNIKGETPLYLMAKNGYDTENIRTLIML  330 (682)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc
Confidence                          123345566666666666664 466666666665 4556666667777766666 46666666666


Q ss_pred             CCccceecCCCCchHHHHHHhC-CCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccC
Q 009457          183 DPEIVTIKDKKGQTALHMAVKG-QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQ  261 (534)
Q Consensus       183 ~~~~~~~~d~~g~t~Lh~A~~~-g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~  261 (534)
                      +++ ++..|..|.||||+|+.. ++.++++.|++. +.++|.+|..|+||||+|+..++.+++++|+++ |++++..+..
T Consensus       331 gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~-gad~~~~~~~  407 (682)
T PHA02876        331 GAD-VNAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNARDYCDKTPIHYAAVRNNVVIINTLLDY-GADIEALSQK  407 (682)
T ss_pred             CCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCccccCCC
Confidence            666 366666666777766663 345566666654 455566677777777777777777777777763 6677777777


Q ss_pred             CCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHh
Q 009457          262 RETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELK  306 (534)
Q Consensus       262 g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  306 (534)
                      |.||||+|+.  .++ ...++++|++.|++....+..+.+++.+.
T Consensus       408 g~T~Lh~A~~--~~~-~~~~vk~Ll~~gadin~~d~~G~TpLh~A  449 (682)
T PHA02876        408 IGTALHFALC--GTN-PYMSVKTLIDRGANVNSKNKDLSTPLHYA  449 (682)
T ss_pred             CCchHHHHHH--cCC-HHHHHHHHHhCCCCCCcCCCCCChHHHHH
Confidence            7777777664  222 12456666777776666666666666554

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=307.81  Aligned_cols=269  Identities=14%  Similarity=0.156  Sum_probs=227.1

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcC--CHHHHHHHHhcCCh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN--FQDIFSCLLKFCDV   82 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g--~~~iv~~Ll~~~~~   82 (534)
                      +..|..|.||||+|++.|+.++++.|++++++             ++.+|..|.||||+|+..+  ..++++.|++++  
T Consensus        66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-------------in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G--  130 (446)
T PHA02946         66 NETDDDGNYPLHIASKINNNRIVAMLLTHGAD-------------PNACDKQHKTPLYYLSGTDDEVIERINLLVQYG--  130 (446)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-------------CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC--
Confidence            46788999999999999999999999999876             4568899999999999876  489999999987  


Q ss_pred             hhhh-ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccccC
Q 009457           83 EIVK-IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD--HLDVVNTILDADVSCTRIVRKN  159 (534)
Q Consensus        83 ~~~~-~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~  159 (534)
                      .+++ ..+..|.|||| |+..|+.+++++|++.+.+. +..|..|.||||+|+..+  +.+++++|++.|++ ++.+|.+
T Consensus       131 adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~  207 (446)
T PHA02946        131 AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHD  207 (446)
T ss_pred             CCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCC
Confidence            4455 35889999998 66678999999999999888 788999999999998755  47899999999998 6788999


Q ss_pred             CCcHHHHHHHcC--CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCC-HHHHHHhHhcCccc----------------
Q 009457          160 GKTALHTAARYG--LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-PSVVEYILSADHLI----------------  220 (534)
Q Consensus       160 g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~iv~~Ll~~~~~~----------------  220 (534)
                      |.||||+|+..|  +.++++.|++ +++ ++.+|..|+||||+|++.++ .+++++|++++...                
T Consensus       208 G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~  285 (446)
T PHA02946        208 GNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDV  285 (446)
T ss_pred             CCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHH
Confidence            999999999986  8899999985 677 58899999999999999988 58999999864321                


Q ss_pred             ---cccc-cCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccccc
Q 009457          221 ---LNER-DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYV  296 (534)
Q Consensus       221 ---in~~-d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~  296 (534)
                         ++.. +..|.||||+|+.+|+.+++++|+++ |       ..|+||||+|+.  .++.  +++++|+..|++.... 
T Consensus       286 ~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~-~-------~~~~t~L~~A~~--~~~~--~~v~~Ll~~ga~~n~~-  352 (446)
T PHA02946        286 LEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN-D-------IICEDAMYYAVL--SEYE--TMVDYLLFNHFSVDSV-  352 (446)
T ss_pred             HHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC-C-------CccccHHHHHHH--hCHH--HHHHHHHHCCCCCCCc-
Confidence               1222 23578999999999999999999995 4       368999999998  6655  9999999999998764 


Q ss_pred             CChhhHHHHh
Q 009457          297 GQVDEAMELK  306 (534)
Q Consensus       297 ~~~~~~~~~~  306 (534)
                      ..+.+++.+.
T Consensus       353 ~~G~t~l~~a  362 (446)
T PHA02946        353 VNGHTCMSEC  362 (446)
T ss_pred             cccccHHHHH
Confidence            4566666554

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-35  Score=314.06  Aligned_cols=255  Identities=20%  Similarity=0.217  Sum_probs=209.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      +..+.||||.|++.|+.++|+.|++.+.+             ++.++..|.||||+||..|+.++++.|++.+....   
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-------------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---   97 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHN-------------VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCS---   97 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCC-------------CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccc---
Confidence            45678999999999999999999999876             45788999999999999999999999998753221   


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHH---------------------------------HhhCccccccCCCC-CCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKEL---------------------------------VSIWPELCKSCDSS-NTSPLYSA  133 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~L---------------------------------l~~~~~l~~~~d~~-g~tpLh~A  133 (534)
                       ...+.+|+|.|+..|+.++++.|                                 +++|+++ +..|.. |.||||+|
T Consensus        98 -~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A  175 (477)
T PHA02878         98 -VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYA  175 (477)
T ss_pred             -cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHH
Confidence             14678899999988876655554                                 4455555 455666 99999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhC-CCHHHHHH
Q 009457          134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG-QCPSVVEY  212 (534)
Q Consensus       134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-g~~~iv~~  212 (534)
                      +..|+.+++++|++.|++ .+..|..|.||||.|++.|+.++++.|++.+++ ++.+|..|+||||+|+.. ++.+++++
T Consensus       176 ~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~  253 (477)
T PHA02878        176 TENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKL  253 (477)
T ss_pred             HhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHH
Confidence            999999999999999888 567888999999999999999999999999988 588899999999999975 68999999


Q ss_pred             hHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcC
Q 009457          213 ILSADHLILNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAG  289 (534)
Q Consensus       213 Ll~~~~~~in~~d~-~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~g  289 (534)
                      |+++ +.++|.++. .|.||||+|  .++.+++++|+++ |+|+|.+|..|.||||+|+.. ....  ++.+.|+..+
T Consensus       254 Ll~~-gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~~g~TpL~~A~~~-~~~~--~~~~~li~~~  324 (477)
T PHA02878        254 LLEH-GVDVNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNSYKLTPLSSAVKQ-YLCI--NIGRILISNI  324 (477)
T ss_pred             HHHc-CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHH-cCcc--chHHHHHHHH
Confidence            9986 556677775 799999999  5678899999984 899999999999999999872 2222  5566665543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-35  Score=308.79  Aligned_cols=268  Identities=18%  Similarity=0.230  Sum_probs=240.0

Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcC---CHHHHHHHHhcCChhhhhccCCCC
Q 009457           16 FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN---FQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        16 h~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      ..++..++.++++.|++.+.+             ++..+..|.||||+|+..|   +.++++.|++.|  .+++..+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~-------------vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g   83 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD-------------VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCG   83 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC-------------cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCC
Confidence            456788999999999999876             4677889999999999998   999999999988  6788889999


Q ss_pred             CcHHHHHHHcC-CHHHHHHHHhhCccccccCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           93 MNTFHVAAKKG-HLGIAKELVSIWPELCKSCDSSNTSPLYSAA--VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        93 ~t~Lh~Aa~~g-~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      .||||+|+..| +.+++++|+++++++ +..|..|.||||+|+  ..++.+++++|++.|++ .+..|..|.||||+|+.
T Consensus        84 ~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~  161 (471)
T PHA03095         84 FTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLK  161 (471)
T ss_pred             CCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            99999999999 599999999999998 788999999999999  55689999999999998 67889999999999998


Q ss_pred             cC--CHHHHHHHHhcCCccceecCCCCchHHHHHHhC--CCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH--HH
Q 009457          170 YG--LINIVTALIDRDPEIVTIKDKKGQTALHMAVKG--QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP--QI  243 (534)
Q Consensus       170 ~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~--~i  243 (534)
                      .+  +.+++++|++.+++. +..|..|+||||.|+..  +..++++.|++. +.+++.+|..|+||||+|+..++.  .+
T Consensus       162 ~~~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~  239 (471)
T PHA03095        162 SRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSL  239 (471)
T ss_pred             cCCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCchHHH
Confidence            76  689999999999995 66699999999999874  788999999996 567799999999999999999875  57


Q ss_pred             HHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457          244 VSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR  307 (534)
Q Consensus       244 v~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  307 (534)
                      ++.|++ .|+++|.+|..|+||||+|+.  .++.  +++++|++.|++.......+.+++.+..
T Consensus       240 v~~ll~-~g~din~~d~~g~TpLh~A~~--~~~~--~~v~~LL~~gad~n~~~~~g~tpl~~A~  298 (471)
T PHA03095        240 VLPLLI-AGISINARNRYGQTPLHYAAV--FNNP--RACRRLIALGADINAVSSDGNTPLSLMV  298 (471)
T ss_pred             HHHHHH-cCCCCCCcCCCCCCHHHHHHH--cCCH--HHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            888888 599999999999999999998  7777  9999999999999888777777777543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-35  Score=248.40  Aligned_cols=209  Identities=27%  Similarity=0.301  Sum_probs=185.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhcc-CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIR-SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV  135 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~  135 (534)
                      +.++.+.+++.....-|+.+++... ..++.+ |.+|+||||+|+..|+.+++.+|++...-..+..|..|+||||.|+.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~-kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP-KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh-hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            5678888998888888899988643 334444 45999999999999999999999963333346669999999999999


Q ss_pred             cCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          136 QDHLDVVNTILDA-DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       136 ~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      .|+.++|+.|+.+ +++ .+..+..|.||||+|+..|..+|+++|+++++. +..+|..|+||||-|+.-|..+++++|+
T Consensus        82 ~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             cCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHH
Confidence            9999999999998 666 788999999999999999999999999999987 6999999999999999999999999999


Q ss_pred             hcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          215 SADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       215 ~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ..+ ..+|.+|..|+||||.|...++.++..+|++. |++++..|++| ||+..|..
T Consensus       160 ~~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hcC-CCCCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-chHHHHHH
Confidence            974 66799999999999999999999999999995 89999999999 99988865

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.8e-34  Score=303.65  Aligned_cols=294  Identities=15%  Similarity=0.129  Sum_probs=237.0

Q ss_pred             CCCCChHHHHH-----HHcCCHHHHHHHHHhc-CCCCCCCCcchHHHHHhcc-cCCCCcHHHHHHH--cCCHHHHHHHHh
Q 009457            8 RFITHQSFFSA-----VRSGDLETLKNIIDNL-TKDEAPDGSSLVSELMAMQ-NDTGETALYISAA--NNFQDIFSCLLK   78 (534)
Q Consensus         8 ~~~g~t~Lh~A-----a~~G~~~~v~~ll~~~-~~~~~~~~~~~~~~ll~~~-n~~g~T~L~~Aa~--~g~~~iv~~Ll~   78 (534)
                      ++.+..+++..     .+.++.+++++|++.+ .+             ++.. |..|.||||.|+.  .++.+++++|++
T Consensus       134 ~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~AD-------------IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe  200 (764)
T PHA02716        134 NNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVN-------------LNYVCKKTGYGILHAYLGNMYVDIDILEWLCN  200 (764)
T ss_pred             CcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCC-------------cccccCCCCCcHHHHHHHhccCCHHHHHHHHH
Confidence            33455555544     4679999999999998 65             4556 7889999999875  467899999999


Q ss_pred             cCChhhhhccCCCCCcHHHHHHHcCC--HHHHHHHHhhCccccccCCCCCCcHHHHH-----------------------
Q 009457           79 FCDVEIVKIRSRSDMNTFHVAAKKGH--LGIAKELVSIWPELCKSCDSSNTSPLYSA-----------------------  133 (534)
Q Consensus        79 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A-----------------------  133 (534)
                      .|  .+++.+|..|.||||+|+..|+  .+++++|+++|+++ +.+|..|.||||+|                       
T Consensus       201 ~G--ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~  277 (764)
T PHA02716        201 NG--VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK  277 (764)
T ss_pred             cC--CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence            87  6788899999999999999995  59999999999998 77899999999975                       


Q ss_pred             --------------HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH--cCCHHHHHHHHhcCCccceecCCCCchH
Q 009457          134 --------------AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR--YGLINIVTALIDRDPEIVTIKDKKGQTA  197 (534)
Q Consensus       134 --------------a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  197 (534)
                                    +..|+.+++++|++.|++ .+.+|.+|+||||+|+.  .++.+++++|++.+++ ++.+|..|+||
T Consensus       278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TP  355 (764)
T PHA02716        278 VKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTV  355 (764)
T ss_pred             cccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCH
Confidence                          345788999999999988 67889999999999864  4689999999999998 58999999999


Q ss_pred             HHHHHh--------------CCCHHHHHHhHhcCccccccccCCCChHHHHH----HHcCCHHHHHHHhccC--------
Q 009457          198 LHMAVK--------------GQCPSVVEYILSADHLILNERDKKGNTAVHIA----TRKCRPQIVSLLLSYT--------  251 (534)
Q Consensus       198 Lh~A~~--------------~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A----~~~~~~~iv~~Ll~~~--------  251 (534)
                      ||+|+.              .++.+++++|+++ +.+++.+|..|.||||.+    ...++.+++++|++.+        
T Consensus       356 LH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~  434 (764)
T PHA02716        356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHR  434 (764)
T ss_pred             HHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhh
Confidence            999875              3689999999996 577899999999999943    2346778888877631        


Q ss_pred             ----------------------------------------------------CccccccccCCCCHHHHHHHccCCCC--
Q 009457          252 ----------------------------------------------------SIDVNAINNQRETAMDLADKLQYGDS--  277 (534)
Q Consensus       252 ----------------------------------------------------g~~~~~~n~~g~t~L~lA~~~~~~~~--  277 (534)
                                                                          +.++|..|..|.||||+|+.  .++.  
T Consensus       435 ~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~--~g~~~~  512 (764)
T PHA02716        435 ILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSII--SHTNAN  512 (764)
T ss_pred             hhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHH--cCCccc
Confidence                                                                11235568899999999998  5443  


Q ss_pred             -HHHHHHHHHHcCCccccccCChhhHHHHhhhcchh---hhhHHHHHhh
Q 009457          278 -TLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDI---KHEVSAQLIQ  322 (534)
Q Consensus       278 -~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~  322 (534)
                       ..+++++|++.|++.......+.+++.+.-.....   ..+..+.+.+
T Consensus       513 v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~  561 (764)
T PHA02716        513 IVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD  561 (764)
T ss_pred             hhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh
Confidence             23667999999999998888888888876543322   2344454444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.5e-34  Score=276.55  Aligned_cols=215  Identities=11%  Similarity=0.126  Sum_probs=190.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      ..|.+|.||||+|++.|+.++++.|++.+.+.+             .  .+|.||||+|+..|+.++++.|++.+  .++
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-------------~--~d~~TpLh~Aa~~g~~eiV~lLL~~G--adv   87 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKN-------------L--LENEFPLHQAATLEDTKIVKILLFSG--MDD   87 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-------------C--CCCCCHHHHHHHCCCHHHHHHHHHCC--CCC
Confidence            568899999999999999999999999987532             2  24789999999999999999999987  567


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCcH
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSN-TSPLYSAAVQDHLDVVNTILDADVSCTRIVR-KNGKTA  163 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tp  163 (534)
                      +..|..|+||||+|+..|+.+++++|+++++++ +..+..| .||||+|+..|+.+++++|++.+++.   .| ..|.||
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~Tp  163 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSC  163 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccH
Confidence            788999999999999999999999999999998 5567777 59999999999999999999987653   23 358999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccceecCCCCchH-HHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHH
Q 009457          164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA-LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ  242 (534)
Q Consensus       164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~  242 (534)
                      ||+|++.|+.++++.|++++++ ++.+|..|.|| ||+|+.+|+.+++++|+++ +.++|.+|..| |+|      ++.+
T Consensus       164 Lh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~~~~~~-~~l------~~~e  234 (284)
T PHA02791        164 IHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYSVNLEN-VLL------DDAE  234 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCcccC-ccC------CCHH
Confidence            9999999999999999999998 58889999977 9999999999999999997 56679999854 555      8899


Q ss_pred             HHHHHhcc
Q 009457          243 IVSLLLSY  250 (534)
Q Consensus       243 iv~~Ll~~  250 (534)
                      ++++|+++
T Consensus       235 ~~~~ll~~  242 (284)
T PHA02791        235 IAKMIIEK  242 (284)
T ss_pred             HHHHHHHh
Confidence            99999985

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=298.11  Aligned_cols=259  Identities=17%  Similarity=0.211  Sum_probs=222.8

Q ss_pred             CCCChHHHHHHHc--CCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcC------CHHHHHHHHhcC
Q 009457            9 FITHQSFFSAVRS--GDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN------FQDIFSCLLKFC   80 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~--G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g------~~~iv~~Ll~~~   80 (534)
                      .+|.||||.++..  |+.++|+.|++.|++.             +.++ .+.||||.|+.++      +.++++.|+++|
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-------------n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~G   98 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADV-------------NYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFG   98 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc-------------cCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCC
Confidence            4688999876654  3689999999999874             3333 5789999998754      578999999998


Q ss_pred             ChhhhhccCCCCCcHHHHHHHc---CCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCcccc
Q 009457           81 DVEIVKIRSRSDMNTFHVAAKK---GHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ--DHLDVVNTILDADVSCTRI  155 (534)
Q Consensus        81 ~~~~~~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~--g~~~~v~~Ll~~~~~~~~~  155 (534)
                        .+++.++..|.||||.|+..   |+.+++++|+++|+++.+..|..|.||||+|+..  ++.+++++|++.|+++...
T Consensus        99 --adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~  176 (494)
T PHA02989         99 --ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK  176 (494)
T ss_pred             --CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence              67888999999999988765   6899999999999998567899999999998764  6899999999999985444


Q ss_pred             cccCCCcHHHHHHHcC----CHHHHHHHHhcCCccceecCCCCchHHHHHHhC------CCHHHHHHhHhcCcccccccc
Q 009457          156 VRKNGKTALHTAARYG----LINIVTALIDRDPEIVTIKDKKGQTALHMAVKG------QCPSVVEYILSADHLILNERD  225 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~------g~~~iv~~Ll~~~~~~in~~d  225 (534)
                      .+..|.||||.|++.+    +.+++++|+++|++ ++..|..|.||||.++..      +..+++++|+.  +.++|.+|
T Consensus       177 ~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d  253 (494)
T PHA02989        177 TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKD  253 (494)
T ss_pred             ccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCC
Confidence            6789999999998764    89999999999999 588888999999987764      35678888776  47789999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          226 KKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       226 ~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      ..|+||||+|+..++.+++++|++. |+|++.+|..|.||||+|+.  .++.  ++++.|++.+..
T Consensus       254 ~~G~TpL~~Aa~~~~~~~v~~LL~~-Gadin~~d~~G~TpL~~A~~--~~~~--~iv~~LL~~~p~  314 (494)
T PHA02989        254 KKGFNPLLISAKVDNYEAFNYLLKL-GDDIYNVSKDGDTVLTYAIK--HGNI--DMLNRILQLKPG  314 (494)
T ss_pred             CCCCCHHHHHHHhcCHHHHHHHHHc-CCCccccCCCCCCHHHHHHH--cCCH--HHHHHHHhcCCC
Confidence            9999999999999999999999995 99999999999999999998  6766  999999987653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=299.37  Aligned_cols=263  Identities=21%  Similarity=0.270  Sum_probs=236.6

Q ss_pred             cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHH--
Q 009457           21 SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHV--   98 (534)
Q Consensus        21 ~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~--   98 (534)
                      ....+.++.+++.+.             +.+..+..+.||||.|++.|+.++|+.|++.|  .+++..+..|.||||+  
T Consensus        12 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g--~~~~~~~~~~~t~L~~~~   76 (480)
T PHA03100         12 IIKVKNIKYIIMEDD-------------LNDYSYKKPVLPLYLAKEARNIDVVKILLDNG--ADINSSTKNNSTPLHYLS   76 (480)
T ss_pred             HHHHHHHHHHHhcCc-------------cchhhhcccchhhhhhhccCCHHHHHHHHHcC--CCCCCccccCcCHHHHHH
Confidence            344567777876542             23456788999999999999999999999987  5567778889999999  


Q ss_pred             ---HHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC--
Q 009457           99 ---AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA--VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG--  171 (534)
Q Consensus        99 ---Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--  171 (534)
                         |+..|+.+++++|+++++++ +..|..|.||||+|+  ..|+.+++++|++.+++ .+..+..|.||||+|+..|  
T Consensus        77 ~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~  154 (480)
T PHA03100         77 NIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKI  154 (480)
T ss_pred             HHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCC
Confidence               99999999999999999999 788999999999999  99999999999999988 6778999999999999999  


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCC------ChHHHHHHHcCC--HHH
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKG------NTAVHIATRKCR--PQI  243 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g------~T~Lh~A~~~~~--~~i  243 (534)
                      +.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++..+..|      .||||.|+..++  .++
T Consensus       155 ~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~i  232 (480)
T PHA03100        155 DLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAACYNEITLEV  232 (480)
T ss_pred             hHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHH
Confidence            99999999999999 588899999999999999999999999996 55668888888      999999999999  999


Q ss_pred             HHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457          244 VSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR  307 (534)
Q Consensus       244 v~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  307 (534)
                      +++|++. |++++.+|..|.||||+|+.  .++.  +++++|++.|++.......+.+++++..
T Consensus       233 v~~Ll~~-g~din~~d~~g~TpL~~A~~--~~~~--~iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        233 VNYLLSY-GVPINIKDVYGFTPLHYAVY--NNNP--EFVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             HHHHHHc-CCCCCCCCCCCCCHHHHHHH--cCCH--HHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            9999995 99999999999999999998  6766  9999999999998877777777776553

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=292.98  Aligned_cols=228  Identities=21%  Similarity=0.167  Sum_probs=210.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      .+++||.|++.|+.+++++|++.|  .+++..+..|.||||+|+..|+.+++++|++.+++. +..+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence            578999999999999999999987  556777889999999999999999999999999876 56678899999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      |+.+++++|++.+.......+.+|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999876677788899999999999999999999999999 588999999999999999999999999996


Q ss_pred             CccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCC-CHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457          217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRE-TAMDLADKLQYGDSTLEIKEALAEAGAKHAR  294 (534)
Q Consensus       217 ~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~-t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~  294 (534)
                       +.+++.+|..|.||||+|+..|+.+++++|++. |++++..+..|. ||+|+|+.  .++.  +++++|++.|++...
T Consensus       158 -g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~~~t~l~~A~~--~~~~--~iv~~Ll~~gad~n~  230 (413)
T PHA02875        158 -KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS-GANIDYFGKNGCVAALCYAIE--NNKI--DIVRLFIKRGADCNI  230 (413)
T ss_pred             -CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCcCCCCCCchHHHHHHH--cCCH--HHHHHHHHCCcCcch
Confidence             556799999999999999999999999999995 999999998875 88999998  7777  999999999999754

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-34  Score=243.66  Aligned_cols=211  Identities=24%  Similarity=0.303  Sum_probs=188.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      +.++.+.+++..-...++.+++..+           +.+....|.+|.||||+||..|+.+++++|++... ..++-+|.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~-----------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n-v~~ddkDd   70 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP-----------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN-VKPDDKDD   70 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh-----------hhhhccccccCCceeeeeeecCchhHHHHHHhcCC-CCCCCccc
Confidence            5678899999999999999999876           34444555699999999999999999999998533 34566788


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhh-CccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      .|.||||+|+..|+.++|+.|+.+ ++++ +..+..|.||||||+..|+.+++++|++.++. ++.+|..|.||||.|+.
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAa  148 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAA  148 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHh
Confidence            999999999999999999999999 7877 78889999999999999999999999999977 78999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHc
Q 009457          170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK  238 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~  238 (534)
                      .|.++++++|+..++. .+.+|+.|+||||.|...|+.++..+|++++ .++...|+.| ||+..|+..
T Consensus       149 vGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  149 VGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             ccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHHHH
Confidence            9999999999999987 5999999999999998889999999999975 6678899988 998887643

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=291.00  Aligned_cols=268  Identities=21%  Similarity=0.222  Sum_probs=223.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCc
Q 009457           15 FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMN   94 (534)
Q Consensus        15 Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   94 (534)
                      |+.+....+.+-+...++.....         +...+..+..+.||||.|++.|+.++|++|++.+  .+++..+..|.|
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~---------~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~T   72 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHT---------ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLT   72 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhh---------hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCC
Confidence            56777777776566666653211         1222345667899999999999999999999987  567888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHH----------------------------
Q 009457           95 TFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL----------------------------  146 (534)
Q Consensus        95 ~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll----------------------------  146 (534)
                      |||+|+..|+.++++.|++.+....   ...+.+|++.|+..++.++++.|+                            
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~i  149 (477)
T PHA02878         73 PLHIICKEPNKLGMKEMIRSINKCS---VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEI  149 (477)
T ss_pred             HHHHHHHCccHhHHHHHHHHHhccc---cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHH
Confidence            9999999999999999999876542   156789999999888766555554                            


Q ss_pred             -----hcCCCcccccccC-CCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccc
Q 009457          147 -----DADVSCTRIVRKN-GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI  220 (534)
Q Consensus       147 -----~~~~~~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  220 (534)
                           +.|++ .+..+.. |.||||+|+..|+.+++++|++.+++ ++..|..|.||||.|+..|+.+++++|++. +.+
T Consensus       150 v~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~  226 (477)
T PHA02878        150 TKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLEN-GAS  226 (477)
T ss_pred             HHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-CCC
Confidence                 44555 4556677 99999999999999999999999999 588999999999999999999999999996 567


Q ss_pred             cccccCCCChHHHHHHHc-CCHHHHHHHhccCCcccccccc-CCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCC
Q 009457          221 LNERDKKGNTAVHIATRK-CRPQIVSLLLSYTSIDVNAINN-QRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQ  298 (534)
Q Consensus       221 in~~d~~g~T~Lh~A~~~-~~~~iv~~Ll~~~g~~~~~~n~-~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  298 (534)
                      ++.+|..|+||||+|+.. ++.+++++|+++ |++++.++. .|.||||+|..    +.  +++++|++.|++.......
T Consensus       227 in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~~~~~~g~TpLh~A~~----~~--~~v~~Ll~~gadin~~d~~  299 (477)
T PHA02878        227 TDARDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAKSYILGLTALHSSIK----SE--RKLKLLLEYGADINSLNSY  299 (477)
T ss_pred             CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCCCHHHHHcc----CH--HHHHHHHHCCCCCCCcCCC
Confidence            799999999999999975 789999999995 999999986 89999999943    33  8899999999999888777


Q ss_pred             hhhHHHHh
Q 009457          299 VDEAMELK  306 (534)
Q Consensus       299 ~~~~~~~~  306 (534)
                      +.+++.+.
T Consensus       300 g~TpL~~A  307 (477)
T PHA02878        300 KLTPLSSA  307 (477)
T ss_pred             CCCHHHHH
Confidence            77777655

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-33  Score=292.56  Aligned_cols=261  Identities=15%  Similarity=0.163  Sum_probs=226.6

Q ss_pred             CCCChHHHHHHH--cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc-----CCHHHHHHHHhcCC
Q 009457            9 FITHQSFFSAVR--SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN-----NFQDIFSCLLKFCD   81 (534)
Q Consensus         9 ~~g~t~Lh~Aa~--~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~-----g~~~iv~~Ll~~~~   81 (534)
                      .++.|+++.+..  .++.++|+.|++++.+             ++..+..|.||||.|+.+     ++.++++.|+++| 
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-------------vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G-   99 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-------------VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG-   99 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCC-------------CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC-
Confidence            456777764444  4589999999999987             467789999999999864     6799999999998 


Q ss_pred             hhhhhccCCCCCcHHHHHHHcC---CHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccc
Q 009457           82 VEIVKIRSRSDMNTFHVAAKKG---HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH---LDVVNTILDADVSCTRI  155 (534)
Q Consensus        82 ~~~~~~~~~~g~t~Lh~Aa~~g---~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~~~~~~  155 (534)
                       .+++..|..|+||||+|+..+   +.+++++|+++|+++ +..|..|.||||+|+..|+   .+++++|++.|+++...
T Consensus       100 -adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~  177 (489)
T PHA02798        100 -ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH  177 (489)
T ss_pred             -CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc
Confidence             678889999999999999986   789999999999998 7889999999999999998   99999999999885433


Q ss_pred             cccCCCcHHHHHHHc----CCHHHHHHHHhcCCccceecCCCCchHHH-------HHHhCCCHHHHHHhHhcCccccccc
Q 009457          156 VRKNGKTALHTAARY----GLINIVTALIDRDPEIVTIKDKKGQTALH-------MAVKGQCPSVVEYILSADHLILNER  224 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~g~~~iv~~Ll~~~~~~in~~  224 (534)
                      .+..|.||||.++..    ++.+++++|+++|++ ++..+..|.++++       .+...++.+++.+|+.  +.++|.+
T Consensus       178 ~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~  254 (489)
T PHA02798        178 NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQV  254 (489)
T ss_pred             cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCc
Confidence            356799999998764    589999999999998 4778888888876       2455677889988876  3678999


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccc
Q 009457          225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHA  293 (534)
Q Consensus       225 d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~  293 (534)
                      |..|+||||+|+..++.+++++|++. |+|++.+|..|+||||+|+.  .++.  ++++.|++.|++..
T Consensus       255 d~~G~TPL~~A~~~~~~~~v~~LL~~-GAdin~~d~~G~TpL~~A~~--~~~~--~iv~~lL~~~~~~~  318 (489)
T PHA02798        255 DELGFNPLYYSVSHNNRKIFEYLLQL-GGDINIITELGNTCLFTAFE--NESK--FIFNSILNKKPNKN  318 (489)
T ss_pred             CcCCccHHHHHHHcCcHHHHHHHHHc-CCcccccCCCCCcHHHHHHH--cCcH--HHHHHHHccCCCHH
Confidence            99999999999999999999999995 99999999999999999998  6666  89999999988764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-33  Score=269.69  Aligned_cols=198  Identities=22%  Similarity=0.306  Sum_probs=173.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhh
Q 009457            7 FRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVK   86 (534)
Q Consensus         7 ~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~   86 (534)
                      ...+|.|||.+||++|+.++|++|+++........|.-.    .+..+.+|-+||..|+..||.++|+.|++++  ..++
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~----FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN  111 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVR----FDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVN  111 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEE----eCCcccCCCchhhHHhccCcHHHHHHHHHhc--Cccc
Confidence            356788999999999999999999997654332222111    2234567899999999999999999999998  5566


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHH
Q 009457           87 IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHT  166 (534)
Q Consensus        87 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  166 (534)
                      .......|||-.||.-|+.+++++|+++++++ +..|..|.|.||+|+..||.+++++|++.+++ .+.++..|+|+||.
T Consensus       112 ~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~  189 (615)
T KOG0508|consen  112 DTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHD  189 (615)
T ss_pred             cccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHh
Confidence            66666779999999999999999999999999 78999999999999999999999999999999 67899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       167 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      +++.|+++++++|+.++..+  .+|..|.|||..|+..|+.++|++|+
T Consensus       190 caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  190 CAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             hhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHh
Confidence            99999999999999999874  47888999999999999999999998

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.3e-32  Score=283.26  Aligned_cols=163  Identities=16%  Similarity=0.112  Sum_probs=107.0

Q ss_pred             ccCCCCCChHHHHHHHcC---CHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcC--CHHHHHHHHhc
Q 009457            5 KSFRFITHQSFFSAVRSG---DLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN--FQDIFSCLLKF   79 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G---~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g--~~~iv~~Ll~~   79 (534)
                      +..|..|.||||+|+..|   +.++|+.||++|++.             +.+|..|.||||+|+..|  +.|+|+.|++.
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdi-------------n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~  101 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVER-------------LCRNNEGLTPLGVYSKRKYVKSQIVHLLISS  101 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCC-------------cccCCCCCChHHHHHHcCCCcHHHHHHHHhc
Confidence            356788999999999997   599999999999874             567788888888888866  68888888877


Q ss_pred             CChhhhhccC-----------------------------------------CCCCcHHHHHHHcCCHHHHHHHHhhCccc
Q 009457           80 CDVEIVKIRS-----------------------------------------RSDMNTFHVAAKKGHLGIAKELVSIWPEL  118 (534)
Q Consensus        80 ~~~~~~~~~~-----------------------------------------~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l  118 (534)
                      +.....+..+                                         ..|.+|+++|+..++.++|++|++.|++.
T Consensus       102 ~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        102 YSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             CCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence            5322111112                                         14566777777777777777777776665


Q ss_pred             c------ccCCCCCCc-HHHHH------HHcCCHHHHHHHHhcCCCcccccccCCCcHHHH--HHHcCCHHHHHHHHh
Q 009457          119 C------KSCDSSNTS-PLYSA------AVQDHLDVVNTILDADVSCTRIVRKNGKTALHT--AARYGLINIVTALID  181 (534)
Q Consensus       119 ~------~~~d~~g~t-pLh~A------a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~--A~~~g~~~iv~~Ll~  181 (534)
                      .      ...|..+.+ .||+.      ...++.|++++|+++|++ .+.+|.+|.||||+  +...|+.|++++|++
T Consensus       182 ~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        182 TGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            2      012223332 33322      233456666666666666 45677777777774  444455667766666

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.8e-31  Score=285.66  Aligned_cols=292  Identities=15%  Similarity=0.119  Sum_probs=189.7

Q ss_pred             ccCCCCCChHHHHHHHc---CCHHHHHHHHHhcCCCCCCC--CcchHH----------------HHHhc---ccCC-CCc
Q 009457            5 KSFRFITHQSFFSAVRS---GDLETLKNIIDNLTKDEAPD--GSSLVS----------------ELMAM---QNDT-GET   59 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~---G~~~~v~~ll~~~~~~~~~~--~~~~~~----------------~ll~~---~n~~-g~T   59 (534)
                      ...|.+|.||||+|+..   |+.++|+.|++.+.+....+  |.+++.                .++..   .|.+ ..+
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            34588999999998665   88999999999998754222  233322                12211   1111 225


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHH--HcCCHHHHHHHHhhCccccccCC---CCC--------
Q 009457           60 ALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAA--KKGHLGIAKELVSIWPELCKSCD---SSN--------  126 (534)
Q Consensus        60 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa--~~g~~~iv~~Ll~~~~~l~~~~d---~~g--------  126 (534)
                      ++|.|+..|+.++|++|+++|  .+++.+|..|+||||.|+  ..|+.+++++|+++|+++. ..|   ..|        
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccccc
Confidence            566677777788888888776  667778888999998543  4678999999999988873 222   233        


Q ss_pred             ---CcHHHHHHH-----------cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH--HHHHHHHhcCCccc---
Q 009457          127 ---TSPLYSAAV-----------QDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLI--NIVTALIDRDPEIV---  187 (534)
Q Consensus       127 ---~tpLh~Aa~-----------~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~--~iv~~Ll~~~~~~~---  187 (534)
                         .||||+|+.           .++.+++++|++.|++ .+.+|.+|.||||+|+.+|+.  ++|+.|++ +.+..   
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc
Confidence               589999875           4578899999998888 677888899999999988874  68888875 44321   


Q ss_pred             eecCCCCchHHHHHH----------------------------------------------------------------h
Q 009457          188 TIKDKKGQTALHMAV----------------------------------------------------------------K  203 (534)
Q Consensus       188 ~~~d~~g~t~Lh~A~----------------------------------------------------------------~  203 (534)
                      ...|..|.+|+|+|+                                                                .
T Consensus       261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMT  340 (661)
T ss_pred             cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHH
Confidence            122333444444443                                                                1


Q ss_pred             CCC--HHHHHHhHhcCc-----------------------------cccccccCCCChHHHHHHHcC-------------
Q 009457          204 GQC--PSVVEYILSADH-----------------------------LILNERDKKGNTAVHIATRKC-------------  239 (534)
Q Consensus       204 ~g~--~~iv~~Ll~~~~-----------------------------~~in~~d~~g~T~Lh~A~~~~-------------  239 (534)
                      .|.  .+++++|++++.                             ..++.+|.+|.||||.|++.+             
T Consensus       341 ~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~  420 (661)
T PHA02917        341 FGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKK  420 (661)
T ss_pred             cCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhh
Confidence            222  225555554321                             112233445777777765332             


Q ss_pred             ----------CHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHh
Q 009457          240 ----------RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELK  306 (534)
Q Consensus       240 ----------~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  306 (534)
                                ..++++.|+.+ |+++|.+|..|.||||+|+.  .++.  +++++|++.|++.......+.+++.+.
T Consensus       421 ~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~~G~TpLh~Aa~--~~~~--~~v~~Ll~~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        421 GLCDMSYACPILSTINICLPY-LKDINMIDKRGETLLHKAVR--YNKQ--SLVSLLLESGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             ccchhhhhhhhHHHHHHHHHC-CCCCCCCCCCCcCHHHHHHH--cCCH--HHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence                      23456777774 77777777777777777776  4444  677777777777766555555555544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.2e-30  Score=276.36  Aligned_cols=261  Identities=11%  Similarity=0.140  Sum_probs=221.6

Q ss_pred             cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc--CCHHHHHHHHhcCChhhhhccCCCCCcHHHH
Q 009457           21 SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN--NFQDIFSCLLKFCDVEIVKIRSRSDMNTFHV   98 (534)
Q Consensus        21 ~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~--g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~   98 (534)
                      ..+.++|+.|++.|.+.             +.. ..|.||||.++..  ++.++|+.|+++|  .+++..+ .+.||||.
T Consensus        13 ~~~~~~v~~LL~~Gadv-------------N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~   75 (494)
T PHA02989         13 TVDKNALEFLLRTGFDV-------------NEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCA   75 (494)
T ss_pred             cCcHHHHHHHHHcCCCc-------------ccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC--CCccCCC-CCCCcHHH
Confidence            58899999999999873             344 5689999876654  4799999999998  5566655 57999999


Q ss_pred             HHHcC------CHHHHHHHHhhCccccccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           99 AAKKG------HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ---DHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        99 Aa~~g------~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      |+.++      +.+++++|+++|+++ +..|..|.||||.|+..   |+.+++++|+++|+++.+.+|..|+||||+|+.
T Consensus        76 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         76 VLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             HHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH
Confidence            98754      478999999999998 78899999999988765   679999999999999537889999999999876


Q ss_pred             c--CCHHHHHHHHhcCCcccee-cCCCCchHHHHHHhCC----CHHHHHHhHhcCccccccccCCCChHHHHHHHc----
Q 009457          170 Y--GLINIVTALIDRDPEIVTI-KDKKGQTALHMAVKGQ----CPSVVEYILSADHLILNERDKKGNTAVHIATRK----  238 (534)
Q Consensus       170 ~--g~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~g----~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~----  238 (534)
                      .  ++.+++++|+++|+++ +. .+..|.||||+|+.++    +.+++++|++. +.+++.+|..|.||||.++..    
T Consensus       155 ~~~~~~~iv~~Ll~~Gadi-~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~  232 (494)
T PHA02989        155 SFSVKKDVIKILLSFGVNL-FEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKIL  232 (494)
T ss_pred             hccCCHHHHHHHHHcCCCc-cccccccCCChHHHHHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchhh
Confidence            4  6899999999999995 55 6789999999998764    89999999997 566799999999999987754    


Q ss_pred             --CCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457          239 --CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR  307 (534)
Q Consensus       239 --~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  307 (534)
                        +..+++++|+.  ++++|.+|..|.||||+|+.  .++.  +++++|++.|++.......+.+++.+..
T Consensus       233 ~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~--~~~~--~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        233 SKKEFKVLNFILK--YIKINKKDKKGFNPLLISAK--VDNY--EAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             cccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHH--hcCH--HHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence              35678887776  69999999999999999998  6766  9999999999999888887778877654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.2e-31  Score=268.11  Aligned_cols=209  Identities=25%  Similarity=0.313  Sum_probs=191.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC
Q 009457           58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD  137 (534)
Q Consensus        58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g  137 (534)
                      .+.++.|++.|..+.|+.|++.. ...++..|.+|.|+||+|+.+++.+++++|++++++++.....-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            46788999999999999999983 36678889999999999999999999999999999996555578999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457          138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD  217 (534)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~  217 (534)
                      +..++..|+++|++ ++.+|.+|.+|||.|++.|+.-+|-+|+.++.+ ++.+|.+|+||||+|+.+|....++.|++-+
T Consensus       124 ~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            99999999999999 778999999999999999999999999999988 6999999999999999999998899999875


Q ss_pred             cccccccc-CCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          218 HLILNERD-KKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       218 ~~~in~~d-~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +.. +.+| ..|+||||+|+..|+..++.+|++ .|++.+.+|.+|+||+++|.+
T Consensus       202 a~~-~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  202 ASL-LLTDDNHGNTPLHWAVVGGNLTAVKLLLE-GGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             ccc-cccccccCCchHHHHHhcCCcceEehhhh-cCCcccccccCCCCHHHHHHH
Confidence            554 5555 999999999999999999995554 799999999999999999987

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=2.5e-31  Score=288.76  Aligned_cols=279  Identities=24%  Similarity=0.302  Sum_probs=228.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhh
Q 009457            7 FRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVK   86 (534)
Q Consensus         7 ~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~   86 (534)
                      .+.+|.||+|.|++.|..+.++.++.++..             .+.++..|.||||.|+..++.++|+.+++.+  ...+
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-------------~~~~gk~gvTplh~aa~~~~~~~v~l~l~~g--A~~~  434 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAGAD-------------PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRG--ASPN  434 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhccCC-------------cccCCCCCcceeeehhhccCcceEEEEeccC--CChh
Confidence            455666666666666666666666666654             3566778888888888888888888888876  5567


Q ss_pred             ccCCCCCcHHHHHHHcC-CHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457           87 IRSRSDMNTFHVAAKKG-HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH  165 (534)
Q Consensus        87 ~~~~~g~t~Lh~Aa~~g-~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  165 (534)
                      ..+..|+||+|+|+..| ..++...+++.+.+. +..-..|.||||.|+..|+.++++.|++.++. .+...+.|.+++|
T Consensus       435 ~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lh  512 (1143)
T KOG4177|consen  435 AKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLH  512 (1143)
T ss_pred             hHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhh
Confidence            77888888888888888 777777777777776 66678888999999999999988888887754 4556677888999


Q ss_pred             HHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457          166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS  245 (534)
Q Consensus       166 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~  245 (534)
                      .|...+...+++.+++.+.+ ++.++..|.||||.|+.+|+.++|++|+++ +.+++.+|+.|.||||.|+..|+.++++
T Consensus       513 la~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~  590 (1143)
T KOG4177|consen  513 LAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAE  590 (1143)
T ss_pred             hhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHHHHH
Confidence            99999999999999998888 588999999999999999999999999996 6677999999999999999999999999


Q ss_pred             HHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc-----cccccCChhhHHHHhhhc
Q 009457          246 LLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK-----HARYVGQVDEAMELKRTV  309 (534)
Q Consensus       246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~-----~~~~~~~~~~~~~~~~~~  309 (534)
                      +|+++ |+++|..|.+|+|||++|..  .+..  .+++.|...|++     .......+..+..+.++.
T Consensus       591 LLlk~-GA~vna~d~~g~TpL~iA~~--lg~~--~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  591 LLLKH-GASVNAADLDGFTPLHIAVR--LGYL--SVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             HHHHc-CCCCCcccccCcchhHHHHH--hccc--chhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence            99995 99999999999999999999  7777  899999999998     333333344455544443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.8e-29  Score=267.04  Aligned_cols=237  Identities=17%  Similarity=0.168  Sum_probs=205.9

Q ss_pred             cCCCCCChHHHHHHHc-----CCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcC---CHHHHHHHH
Q 009457            6 SFRFITHQSFFSAVRS-----GDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANN---FQDIFSCLL   77 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~-----G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g---~~~iv~~Ll   77 (534)
                      ..+..|.||||.|+..     ++.++++.|++.+++             ++.+|..|.||||+|+..+   +.+++++|+
T Consensus        66 ~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll  132 (489)
T PHA02798         66 GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-------------INKKNSDGETPLYCLLSNGYINNLEILLFMI  132 (489)
T ss_pred             CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHH
Confidence            4678899999999864     779999999999887             5678899999999999976   789999999


Q ss_pred             hcCChhhhhccCCCCCcHHHHHHHcCC---HHHHHHHHhhCccccccCCCCCCcHHHHHHHc----CCHHHHHHHHhcCC
Q 009457           78 KFCDVEIVKIRSRSDMNTFHVAAKKGH---LGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ----DHLDVVNTILDADV  150 (534)
Q Consensus        78 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~---~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~----g~~~~v~~Ll~~~~  150 (534)
                      ++|  .+++..|..|.||||+|++.|+   .+++++|+++|+++....+..|.||||.++..    ++.+++++|+++|+
T Consensus       133 ~~G--advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        133 ENG--ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             HcC--CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            998  6788899999999999999998   99999999999998555567899999998764    47999999999998


Q ss_pred             CcccccccCCCcHHH-------HHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCcccccc
Q 009457          151 SCTRIVRKNGKTALH-------TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNE  223 (534)
Q Consensus       151 ~~~~~~d~~g~tpLh-------~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~  223 (534)
                      + .+..+..|.++++       .+...++.+++++|+. +.+ ++.+|..|+||||+|+..|+.+++++|++. ++++|.
T Consensus       211 ~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-GAdin~  286 (489)
T PHA02798        211 I-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQL-GGDINI  286 (489)
T ss_pred             C-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHc-CCcccc
Confidence            8 5667788888877       2445677888888776 466 689999999999999999999999999996 667899


Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCC
Q 009457          224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQR  262 (534)
Q Consensus       224 ~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g  262 (534)
                      +|..|+||||+|+.+++.++++.|+++ +.+++......
T Consensus       287 ~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i~~~~  324 (489)
T PHA02798        287 ITELGNTCLFTAFENESKFIFNSILNK-KPNKNTISYTY  324 (489)
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHHHHHH
Confidence            999999999999999999999999995 77777554433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.4e-29  Score=254.98  Aligned_cols=208  Identities=25%  Similarity=0.324  Sum_probs=188.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC-
Q 009457           12 HQSFFSAVRSGDLETLKNIIDN-LTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS-   89 (534)
Q Consensus        12 ~t~Lh~Aa~~G~~~~v~~ll~~-~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-   89 (534)
                      ..-++.|++.|+++.|+.+++. +..             ++..|.+|-|+||+||.+++.+++++|++++  .+++... 
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~-------------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g--advn~~gG  109 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES-------------VNNPDREGVTLLHWAAINNRLDVARYLISHG--ADVNAIGG  109 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC-------------CCCCCcCCccceeHHHHcCcHHHHHHHHHcC--CCccccCC
Confidence            4678899999999999999998 433             4667889999999999999999999999998  5555555 


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      .-+.||||+|+++|+..++++|+++|+++ ..+|.+|.+|||.|++.|+.-.+-+|+.++.+ .+.+|.+|+||||+|+.
T Consensus       110 ~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAay  187 (600)
T KOG0509|consen  110 VLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAY  187 (600)
T ss_pred             CCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHH
Confidence            67899999999999999999999999999 78899999999999999999999999999977 78999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccceecC-CCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHc
Q 009457          170 YGLINIVTALIDRDPEIVTIKD-KKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK  238 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~  238 (534)
                      +|+...++.|+..++.. ..+| ..|.||||+|+..|+.+++. |+..++...+.+|.+|.||+.+|..+
T Consensus       188 kg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  188 KGFALFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcccHHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            99998899999999996 5555 99999999999999999999 55556778899999999999999876

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=9.1e-30  Score=276.61  Aligned_cols=245  Identities=24%  Similarity=0.281  Sum_probs=214.9

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS  132 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~  132 (534)
                      ....|.||+|.|+..|..++++.++..+  .+.+..+..|.||||.|+..++.++++.+++++++. +..+..|.||+|.
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~g--a~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhv  446 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAG--ADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHV  446 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhcc--CCcccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhh
Confidence            3567889999999999999999999887  447778889999999999999999999999988888 7778899999999


Q ss_pred             HHHcC-CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457          133 AAVQD-HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE  211 (534)
Q Consensus       133 Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  211 (534)
                      |+..| ..+....+++.+.+ .+..-..|.||||.|+..|+.++++.|++.++. .+.....|.+++|+|...+...+.+
T Consensus       447 aa~~g~~~~~~~~l~~~g~~-~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~  524 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLLQYGAD-PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAK  524 (1143)
T ss_pred             hhhcccHhhhhhhHhhcCCC-cchhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHH
Confidence            99999 77888888888777 677888999999999999999999999998866 4667788999999999999999999


Q ss_pred             HhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          212 YILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       212 ~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      .++++ +..++.++..|+||||.|+..|+.++|++|+++ |+|++.+++.|+||||.|+.  .|+.  +++++|.++||+
T Consensus       525 ~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~--~G~~--~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  525 ILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQ--QGHN--DIAELLLKHGAS  598 (1143)
T ss_pred             HHhhc-CCceehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHH--cChH--HHHHHHHHcCCC
Confidence            99986 555689999999999999999999999999995 99999999999999999999  7777  999999999999


Q ss_pred             cccccCChhhHHHHhhh
Q 009457          292 HARYVGQVDEAMELKRT  308 (534)
Q Consensus       292 ~~~~~~~~~~~~~~~~~  308 (534)
                      +......+.+++.....
T Consensus       599 vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             CCcccccCcchhHHHHH
Confidence            98777776666655443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.7e-28  Score=262.58  Aligned_cols=246  Identities=19%  Similarity=0.208  Sum_probs=197.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCChhhhhccCCCCCcHHHHHH
Q 009457           24 LETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAA  100 (534)
Q Consensus        24 ~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa  100 (534)
                      ++.|+.|+.++..             ++..|.+|.||||+|+..   |+.++|+.|++.+  .+++..+..|.||||.|+
T Consensus        12 ~~~~~~l~~~~~~-------------~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa   76 (661)
T PHA02917         12 LDELKQMLRDRDP-------------NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYT   76 (661)
T ss_pred             HHHHHHHHhccCc-------------ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHH
Confidence            4677888875543             356789999999998665   8899999999987  566788999999999999


Q ss_pred             HcCCHH----HHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH--HcCCHH
Q 009457          101 KKGHLG----IAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA--RYGLIN  174 (534)
Q Consensus       101 ~~g~~~----iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~  174 (534)
                      ..|+.+    +++.|++.+... +..|  ..+++|+|+.+|+.+++++|+++|++ .+.+|.+|+||||.|+  ..|+.+
T Consensus        77 ~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~e  152 (661)
T PHA02917         77 NSRHVKVNKDIAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPE  152 (661)
T ss_pred             HcCChhHHHHHHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHH
Confidence            999954    567787764432 2322  23678889999999999999999999 6789999999999654  578999


Q ss_pred             HHHHHHhcCCccceecCC---CC-----------chHHHHHHh-----------CCCHHHHHHhHhcCccccccccCCCC
Q 009457          175 IVTALIDRDPEIVTIKDK---KG-----------QTALHMAVK-----------GQCPSVVEYILSADHLILNERDKKGN  229 (534)
Q Consensus       175 iv~~Ll~~~~~~~~~~d~---~g-----------~t~Lh~A~~-----------~g~~~iv~~Ll~~~~~~in~~d~~g~  229 (534)
                      ++++|+++|++. +..|.   .|           .||||+|+.           .++.+++++|+++ +.++|.+|.+|+
T Consensus       153 ivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~  230 (661)
T PHA02917        153 IIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYC  230 (661)
T ss_pred             HHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCC
Confidence            999999999984 54432   33           599999986           4689999999997 567899999999


Q ss_pred             hHHHHHHHcCCH--HHHHHHhccCCcccc----ccccCCCCHHHHHHHcc-----CCCCHHHHHHHHHHcCCcc
Q 009457          230 TAVHIATRKCRP--QIVSLLLSYTSIDVN----AINNQRETAMDLADKLQ-----YGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       230 T~Lh~A~~~~~~--~iv~~Ll~~~g~~~~----~~n~~g~t~L~lA~~~~-----~~~~~~~i~~~L~~~ga~~  292 (534)
                      ||||+|+.+|+.  +++++|++  |++++    ..|..|.||+++|.-+.     ......+++++|+++|++.
T Consensus       231 TpLh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        231 TALQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             cHHHHHHHcCCCcHHHHHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            999999999985  79999975  77765    45667889999998421     1123569999999999863

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.8e-29  Score=242.55  Aligned_cols=221  Identities=26%  Similarity=0.421  Sum_probs=192.3

Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh-------hhhcc
Q 009457           16 FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE-------IVKIR   88 (534)
Q Consensus        16 h~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~-------~~~~~   88 (534)
                      ..|++.|++..+..|+....+.+       +.++++. ..+|.|||.+||++||.++|++|++++...       ..+-.
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~e-------i~~l~~~-~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge   80 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEE-------IISLIGE-VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGE   80 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHH-------HHHHhcc-ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCc
Confidence            47999999999999988765422       2333333 456789999999999999999999964221       11223


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA  168 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  168 (534)
                      +..|-+||..|+..||+++|+.|+++++++ +.....+.|||--||..|+.+++++|++++++ +++.|..|.|.||+||
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIAC  158 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeee
Confidence            467889999999999999999999999887 56667889999999999999999999999999 7899999999999999


Q ss_pred             HcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHh
Q 009457          169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL  248 (534)
Q Consensus       169 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll  248 (534)
                      .+||.+|+++|++.+++ ++.++..|+|+||.|++.|+.+++++|++++..+  .+|..|.|||..|+..|+.++|+.|+
T Consensus       159 ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             ccCchHHHHHHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHh
Confidence            99999999999999999 6999999999999999999999999999975443  46888999999999999999999999


Q ss_pred             c
Q 009457          249 S  249 (534)
Q Consensus       249 ~  249 (534)
                      .
T Consensus       236 ~  236 (615)
T KOG0508|consen  236 Q  236 (615)
T ss_pred             c
Confidence            6

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=252.61  Aligned_cols=270  Identities=13%  Similarity=0.086  Sum_probs=206.4

Q ss_pred             cCCCCCChHHH-HHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHH-cCCHHHHHHHHhcCChh
Q 009457            6 SFRFITHQSFF-SAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAA-NNFQDIFSCLLKFCDVE   83 (534)
Q Consensus         6 ~~~~~g~t~Lh-~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~-~g~~~iv~~Ll~~~~~~   83 (534)
                      ..+.+|.+++| .|...|++|+|+.|++++++             ++.++..|.||||+|+. .++.|++++|++.|...
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd-------------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~  132 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLE-------------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPT  132 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCC-------------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCc
Confidence            45667778886 45567899999999999876             45667778899999966 68999999999887320


Q ss_pred             ----------------------------------hhhccCCCCCcHHHHHHHcC-------CHHHHHHHHhhCccccccC
Q 009457           84 ----------------------------------IVKIRSRSDMNTFHVAAKKG-------HLGIAKELVSIWPELCKSC  122 (534)
Q Consensus        84 ----------------------------------~~~~~~~~g~t~Lh~Aa~~g-------~~~iv~~Ll~~~~~l~~~~  122 (534)
                                                        ..+.++..|.||||+|+..+       +.++++.|+++|+++ +..
T Consensus       133 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~  211 (631)
T PHA02792        133 CSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYY  211 (631)
T ss_pred             ccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-Ccc
Confidence                                              12345677999999999998       799999999999888 567


Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHhcCCC----------------------c--------------------------
Q 009457          123 DSSNTSPLYSAAVQD--HLDVVNTILDADVS----------------------C--------------------------  152 (534)
Q Consensus       123 d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~----------------------~--------------------------  152 (534)
                      |..|.||||+|+.+.  +.|+++.|++..-+                      .                          
T Consensus       212 d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~  291 (631)
T PHA02792        212 TYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRN  291 (631)
T ss_pred             CCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhh
Confidence            888999999999888  66777766542100                      0                          


Q ss_pred             ----------------------------------------ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC
Q 009457          153 ----------------------------------------TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK  192 (534)
Q Consensus       153 ----------------------------------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  192 (534)
                                                              ..........+++.|+..|+.+++++|+++|+++ +.+|.
T Consensus       292 ~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~  370 (631)
T PHA02792        292 NIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDD  370 (631)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcC
Confidence                                                    0011122456788899999999999999999984 77776


Q ss_pred             CC--chHHHHHHhCCCHH---HHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHH
Q 009457          193 KG--QTALHMAVKGQCPS---VVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMD  267 (534)
Q Consensus       193 ~g--~t~Lh~A~~~g~~~---iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~  267 (534)
                      .|  .||||+|......+   ++++|+++ ++++|.+|..|.||||+|+..++.+++++|+++ |++++.+|..|+||||
T Consensus       371 ~g~~~TpLh~A~~n~~~~v~~IlklLIs~-GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~~G~TpL~  448 (631)
T PHA02792        371 NIINIMPLFPTLSIHESDVLSILKLCKPY-IDDINKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTKYGSTCIG  448 (631)
T ss_pred             CCCChhHHHHHHHhccHhHHHHHHHHHhc-CCccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHH
Confidence            64  68999887766544   57777875 556799999999999999999999999999995 8999999999999999


Q ss_pred             HHHHccCCC------CHHHHHHHHHHcCCcc
Q 009457          268 LADKLQYGD------STLEIKEALAEAGAKH  292 (534)
Q Consensus       268 lA~~~~~~~------~~~~i~~~L~~~ga~~  292 (534)
                      +|.....+.      ...++++.|++.|.+.
T Consensus       449 ~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        449 ICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            987522221      1236788888888765

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=8.1e-28  Score=252.43  Aligned_cols=268  Identities=13%  Similarity=0.130  Sum_probs=211.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhccc-CCCCcHHHHH------HHcCCHHHHHHHHhcCCh
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQN-DTGETALYIS------AANNFQDIFSCLLKFCDV   82 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n-~~g~T~L~~A------a~~g~~~iv~~Ll~~~~~   82 (534)
                      .|-+|++.|+..++.|+|+.|++.+++..+-.    .+  ....+ ..+.|.||++      ...++.|+++.|+++|  
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~----~~--~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~G--  225 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYV----FR--SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNN--  225 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccc----cc--cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCC--
Confidence            68899999999999999999999998742110    00  01123 3344556633      4568999999999998  


Q ss_pred             hhhhccCCCCCcHHHH--HHHcCCHHHHHHHHh--------------------------------hCcccccc-------
Q 009457           83 EIVKIRSRSDMNTFHV--AAKKGHLGIAKELVS--------------------------------IWPELCKS-------  121 (534)
Q Consensus        83 ~~~~~~~~~g~t~Lh~--Aa~~g~~~iv~~Ll~--------------------------------~~~~l~~~-------  121 (534)
                      .+++.+|..|.||||+  |...|+.|++++|++                                ++.+. ..       
T Consensus       226 adIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~  304 (672)
T PHA02730        226 VSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEG  304 (672)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhc
Confidence            7789999999999995  555677999999999                                45544 11       


Q ss_pred             -------------CCCCCCc---------------------HHHHHHHcC---CHHHHHHHHhcCCCcccccccCCCcHH
Q 009457          122 -------------CDSSNTS---------------------PLYSAAVQD---HLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus       122 -------------~d~~g~t---------------------pLh~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                                   .|..|.+                     .||.=...+   +.+++++|+++|++. +. +..|.|||
T Consensus       305 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~-k~~G~TpL  382 (672)
T PHA02730        305 RHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DK-TTDNNYPL  382 (672)
T ss_pred             cCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-Cc-CCCCCcHH
Confidence                         3555544                     566666655   589999999999994 44 47899999


Q ss_pred             HHHHHcCC----HHHHHHHHhcCCc-cceecCCCCchHHHH---HHhCC---------CHHHHHHhHhcCccccccccCC
Q 009457          165 HTAARYGL----INIVTALIDRDPE-IVTIKDKKGQTALHM---AVKGQ---------CPSVVEYILSADHLILNERDKK  227 (534)
Q Consensus       165 h~A~~~g~----~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~---A~~~g---------~~~iv~~Ll~~~~~~in~~d~~  227 (534)
                      |+|+..++    .+++++|+++|++ .++.+|..|.||||.   |...+         ..+++++|+++ ++++|.+|..
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~~  461 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDNE  461 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchhccCCC
Confidence            99998875    8999999999873 257889999999994   33332         23579999986 6667999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHhccCCcccccccc-CCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          228 GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN-QRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       228 g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~-~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                      |+||||+|+..++.+++++|+++ |+++|.+|. .|.||+|.|+....++.  +++++|++.|++.
T Consensus       462 G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~~g~TaL~~Aa~~~~~~~--eIv~~LLs~ga~i  524 (672)
T PHA02730        462 NKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRSIINTAIQKSSYRRENKT--KLVDLLLSYHPTL  524 (672)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCcCCcCHHHHHHHhhcCcH--HHHHHHHHcCCCH
Confidence            99999999999999999999995 999999997 59999999987322344  9999999999976

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=215.64  Aligned_cols=173  Identities=19%  Similarity=0.315  Sum_probs=112.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccc-cCCCcHHHHH
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD--HLDVVNTILDADVSCTRIVR-KNGKTALHTA  167 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A  167 (534)
                      .+.||||.|+..|+.++++.|++.    .+..|..|.||||+|+..+  +.+++++|++.++++ +.++ .+|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHH
Confidence            445666666666666666666543    1334556666666666533  566666666666653 3333 3566666665


Q ss_pred             HHc---CCHHHHHHHHhcCCccceecCCCCchHHHHHHh--CCCHHHHHHhHhcCccccccccCCCChHHHH-HHHcCCH
Q 009457          168 ARY---GLINIVTALIDRDPEIVTIKDKKGQTALHMAVK--GQCPSVVEYILSADHLILNERDKKGNTAVHI-ATRKCRP  241 (534)
Q Consensus       168 ~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~-A~~~~~~  241 (534)
                      +..   ++.+++++|++++++ ++.+|..|.||||+|+.  .++.+++++|++. +.+++.+|.+|+||||. |+..++.
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHhcCCH
Confidence            542   356777777777776 46677777777777665  3567777777775 45567777778888875 4556777


Q ss_pred             HHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          242 QIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       242 ~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +++++|++. |++++.+|..|.||+|+|..
T Consensus       173 ~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        173 KIFDFLTSL-GIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHhh
Confidence            888877774 77888888888888888765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.1e-26  Score=215.16  Aligned_cols=183  Identities=16%  Similarity=0.129  Sum_probs=159.2

Q ss_pred             HHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcC--CHHHHHHHHhhCccccccCCCCC
Q 009457           49 LMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKG--HLGIAKELVSIWPELCKSCDSSN  126 (534)
Q Consensus        49 ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~iv~~Ll~~~~~l~~~~d~~g  126 (534)
                      +.+.....+.||||.|+..|+.++|+.|++.     .+..|..|.||||+|+..+  +.+++++|+++++++....+..|
T Consensus        13 ~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g   87 (209)
T PHA02859         13 FTDYLFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNN   87 (209)
T ss_pred             hHHHHhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCC
Confidence            4455577889999999999999999999975     3457889999999999854  89999999999999943334689


Q ss_pred             CcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCcHHHHHHH--cCCHHHHHHHHhcCCccceecCCCCchHHHH-
Q 009457          127 TSPLYSAAVQ---DHLDVVNTILDADVSCTRIVRKNGKTALHTAAR--YGLINIVTALIDRDPEIVTIKDKKGQTALHM-  200 (534)
Q Consensus       127 ~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-  200 (534)
                      .||||+|+..   ++.+++++|++++++ .+.+|..|.||||.|+.  .++.+++++|++.+.+ ++.+|..|.||||. 
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~  165 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSY  165 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHH
Confidence            9999998864   479999999999998 67899999999999986  4689999999999999 58899999999996 


Q ss_pred             HHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcC
Q 009457          201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKC  239 (534)
Q Consensus       201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~  239 (534)
                      |+..++.+++++|++. +.+++.+|..|.||||+|..++
T Consensus       166 a~~~~~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        166 ILFHSDKKIFDFLTSL-GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhhh
Confidence            5678899999999996 5677999999999999998654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.9e-25  Score=232.21  Aligned_cols=277  Identities=16%  Similarity=0.096  Sum_probs=214.3

Q ss_pred             CCCCChHHHHHHHcCCHH-HHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHH-HHHcCCHHHHHHHHhcCChhhh
Q 009457            8 RFITHQSFFSAVRSGDLE-TLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYI-SAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~-~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~-Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      ..+|.||||.-..+.+.. -++.++..+..             .+..|.+|.+|+|+ |..+|+.|+|++|+++|  .++
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G--Adv   98 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLSS-------------VDYKNINDFDIFEYLCSDNIDIELLKLLISKG--LEI   98 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHhC-------------CCcCccCCccHHHHHHHhcccHHHHHHHHHcC--CCc
Confidence            456678888776665532 23333333322             23567888899976 55689999999999998  678


Q ss_pred             hccCCCCCcHHHHHHH-cCCHHHHHHHHhhCccc-----------------------------------cccCCCCCCcH
Q 009457           86 KIRSRSDMNTFHVAAK-KGHLGIAKELVSIWPEL-----------------------------------CKSCDSSNTSP  129 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~-~g~~~iv~~Ll~~~~~l-----------------------------------~~~~d~~g~tp  129 (534)
                      +.++..|.+|+|+|+. .++.|++++|+++|++.                                   .+..|..|.||
T Consensus        99 N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~  178 (631)
T PHA02792         99 NSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTV  178 (631)
T ss_pred             ccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCch
Confidence            8888889999999966 69999999999999752                                   11345679999


Q ss_pred             HHHHHHcC-------CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC--CHHHHHHHHhcCCcc--------------
Q 009457          130 LYSAAVQD-------HLDVVNTILDADVSCTRIVRKNGKTALHTAARYG--LINIVTALIDRDPEI--------------  186 (534)
Q Consensus       130 Lh~Aa~~g-------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~--------------  186 (534)
                      ||+|+..+       +.|+++.|+++|++ .+..|..|.||||+|+.+.  ..|+++.|++..-+-              
T Consensus       179 L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~  257 (631)
T PHA02792        179 LYYYIITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQ  257 (631)
T ss_pred             HHHHHhhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHH
Confidence            99999999       89999999999998 5678999999999999987  666666665531100              


Q ss_pred             --------------------------------------------------------------------------ceecCC
Q 009457          187 --------------------------------------------------------------------------VTIKDK  192 (534)
Q Consensus       187 --------------------------------------------------------------------------~~~~d~  192 (534)
                                                                                                ......
T Consensus       258 ~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~  337 (631)
T PHA02792        258 YRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRF  337 (631)
T ss_pred             hccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccC
Confidence                                                                                      000011


Q ss_pred             CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCC--ChHHHHHHHcCCHH---HHHHHhccCCccccccccCCCCHHH
Q 009457          193 KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKG--NTAVHIATRKCRPQ---IVSLLLSYTSIDVNAINNQRETAMD  267 (534)
Q Consensus       193 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g--~T~Lh~A~~~~~~~---iv~~Ll~~~g~~~~~~n~~g~t~L~  267 (534)
                      .+.+++|.|+..|+.+++++|+++ +++++.+|.+|  .||||+|......+   ++++|+++ |+++|.+|..|.||||
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~-GADIN~kD~~G~TPLh  415 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY-IDDINKIDKHGRSILY  415 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc-CCccccccccCcchHH
Confidence            244678889999999999999997 56678888875  59999988776654   57888885 9999999999999999


Q ss_pred             HHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHh
Q 009457          268 LADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELK  306 (534)
Q Consensus       268 lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  306 (534)
                      +|+.  .++.  +++++|++.|++.......+.+++.+.
T Consensus       416 ~Aa~--~~n~--eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        416 YCIE--SHSV--SLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             HHHH--cCCH--HHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9998  6666  999999999999887777777777654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=4.8e-26  Score=231.98  Aligned_cols=267  Identities=25%  Similarity=0.309  Sum_probs=220.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCC
Q 009457           12 HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRS   91 (534)
Q Consensus        12 ~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   91 (534)
                      .+-|-.|++.|+.+.+..+|+........--.+.-+.-.+.+|.+|.|+||.|+.+|+.++++.|+++.  ..+...+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~e--a~ldl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE--ALLDLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcch--hhhhhhhcc
Confidence            466889999999999999998754311110001112235677889999999999999999999999986  446667789


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |.+|||+|++.|+.++++.++..+..+ +..+..|.||||.|++.||.+++.+|+.++++ ..++++++.|+|.+|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhh
Confidence            999999999999999999999998555 78889999999999999999999999999999 5689999999999999999


Q ss_pred             CHHHHHHHHhcCCcc-------ceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457          172 LINIVTALIDRDPEI-------VTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV  244 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv  244 (534)
                      ..++++.|++..-..       ...++-.+-+|||+|+++|+.++++.|++. +.++|..-.+| |+||.|+..|..+++
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a-g~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA-GFDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc-CCCcccccccc-hhhhhHhhcCcchhh
Confidence            999999999862110       112445677899999999999999999996 66778776665 999999999999999


Q ss_pred             HHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHH
Q 009457          245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALA  286 (534)
Q Consensus       245 ~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~  286 (534)
                      .+|++ .|++...+|.+|+|+|++...++. +...+++..+.
T Consensus       238 r~ll~-~gin~h~~n~~~qtaldil~d~~~-~~~~ei~ga~~  277 (854)
T KOG0507|consen  238 RFLLE-IGINTHIKNQHGQTALDIIIDLQE-NRRYEIAGAVK  277 (854)
T ss_pred             hHHHh-hccccccccccchHHHHHHHhcch-hhhhhhhhhhh
Confidence            99999 599999999999999999987543 22335554444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.1e-25  Score=222.85  Aligned_cols=191  Identities=17%  Similarity=0.159  Sum_probs=144.9

Q ss_pred             HHHHcCCHHHHHHHHhcCChhh----hhccCCCCCcHHHHHHH--cCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           63 ISAANNFQDIFSCLLKFCDVEI----VKIRSRSDMNTFHVAAK--KGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        63 ~Aa~~g~~~iv~~Ll~~~~~~~----~~~~~~~g~t~Lh~Aa~--~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      +|+..+..|+++.|++++...+    .-.++..++|+||.|+.  .|+.+++++|+++|+++. .  .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn-~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY-K--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC-C--CCCCCHHHHHHHc
Confidence            7888888888888888873322    00456678888888888  788888888888888873 3  3457888888888


Q ss_pred             CCHHHHHHHHhcCCCccccc-----ccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457          137 DHLDVVNTILDADVSCTRIV-----RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE  211 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  211 (534)
                      |+.+++++|+++|++..+..     +..+.+|+|.|+..++.+++++|++++++ ++.+|..|.||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            88888888888886433222     23467788888888888888888888888 4788888888888888888888888


Q ss_pred             HhHhcCccccccccCCCChHHHHHHHcCC--------HHHHHHHhccCCccccccc
Q 009457          212 YILSADHLILNERDKKGNTAVHIATRKCR--------PQIVSLLLSYTSIDVNAIN  259 (534)
Q Consensus       212 ~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~--------~~iv~~Ll~~~g~~~~~~n  259 (534)
                      +|+++ +.++|.+|..|.||||+|+..|+        .+++++|+++ |++++...
T Consensus       239 lLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~-gadI~~~~  292 (437)
T PHA02795        239 WLLEN-GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE-PLSIDCIK  292 (437)
T ss_pred             HHHHC-CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC-CCCCCchh
Confidence            88875 55668888888888888888773        5788888874 77766543

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=4.7e-26  Score=189.96  Aligned_cols=112  Identities=29%  Similarity=0.457  Sum_probs=95.6

Q ss_pred             HHHHhhcccceehhhHHHHHHHHHhhccCCccccCCCCCCCcccccCCc-ceeehhhHHHHHHHHHHHHHHHHHhccccc
Q 009457          342 REAVQNTTNSITVVAVLFASIAFLALFNLPGQYLMHGPEVGKANIADKV-GFRVFCLLNATSLFISLAVVVVQITLVAWD  420 (534)
Q Consensus       342 ~e~lk~t~~s~~v~a~Liatv~f~a~~t~Pgg~~~~~~~~g~~~~~~~~-~f~~F~~~~~~a~~~s~~~~~~~~~~~~~~  420 (534)
                      +||++++++++++||+|||||||+|+||||||||+++++.|+|++.+++ .|++|+++|++||++|+++++++++.+...
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~   80 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDF   80 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3688899999999999999999999999999999987689999998877 899999999999999999998887422111


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Q 009457          421 TTAQKQVVSVVNKLMWTACACTCAAFLSIAFMV  453 (534)
Q Consensus       421 ~~~~~~~~~~~~~l~~~~~~~~~~af~~~~~~~  453 (534)
                      .+.+.....+...+||+++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            222234566677899999999999999999875

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=9.7e-25  Score=219.23  Aligned_cols=208  Identities=16%  Similarity=0.022  Sum_probs=176.0

Q ss_pred             HHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcccc-----ccCCCCCCcHHHHHHH--cCCHHHHHHH
Q 009457           73 FSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC-----KSCDSSNTSPLYSAAV--QDHLDVVNTI  145 (534)
Q Consensus        73 v~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~-----~~~d~~g~tpLh~Aa~--~g~~~~v~~L  145 (534)
                      -++++.++  .+++.+..+|     +|+..+..+++++|+.++.+..     -..+..++|+||+++.  .|+.+++++|
T Consensus        65 ~~~~~~~~--~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         65 YDYFRIHR--DNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHHHcC--cchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            46667776  3344444444     8999999999999999999863     1467789999999999  8999999999


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceec-----CCCCchHHHHHHhCCCHHHHHHhHhcCccc
Q 009457          146 LDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIK-----DKKGQTALHMAVKGQCPSVVEYILSADHLI  220 (534)
Q Consensus       146 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  220 (534)
                      +++|++. +.  .++.||+|.|+..|+.+++++|+++|++..+..     +..+.+++|.|++.++.+++++|+++ +++
T Consensus       138 I~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~-GAD  213 (437)
T PHA02795        138 VDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY-IED  213 (437)
T ss_pred             HHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC-cCC
Confidence            9999994 33  456899999999999999999999997533332     23478999999999999999999996 567


Q ss_pred             cccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCC------CHHHHHHHHHHcCCcccc
Q 009457          221 LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD------STLEIKEALAEAGAKHAR  294 (534)
Q Consensus       221 in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~------~~~~i~~~L~~~ga~~~~  294 (534)
                      +|.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+.  .++      ...+++++|++.|++...
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-GAdIN~~d~~G~TpLh~Aa~--~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLEN-GANVNAVMSNGYTCLDVAVD--RGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH--cCCcccccccHHHHHHHHHhCCCCCCc
Confidence            899999999999999999999999999995 99999999999999999998  443      235899999999997643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=6.2e-24  Score=235.97  Aligned_cols=226  Identities=19%  Similarity=0.141  Sum_probs=180.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHH-HHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFH-VAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh-~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      ..++.+++.|++.|+.+.++.+++.+...+++..|..|+|||| .|+.+++.++++.|++.+.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            4568999999999999999999988444667788899999999 8999999999999999876     577899999999


Q ss_pred             HHcC---CHHHHHHHHhcCCCc---------ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC----------
Q 009457          134 AVQD---HLDVVNTILDADVSC---------TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD----------  191 (534)
Q Consensus       134 a~~g---~~~~v~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d----------  191 (534)
                      +..+   ..+++..+...+...         ....+..|.||||+|+.+|+.++|+.|+++|+++ +.++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCC
Confidence            8732   233444444443220         1112356999999999999999999999999884 4332          


Q ss_pred             ----CCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcC---------CHHHHHHHhccCCcc---c
Q 009457          192 ----KKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKC---------RPQIVSLLLSYTSID---V  255 (534)
Q Consensus       192 ----~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~---------~~~iv~~Ll~~~g~~---~  255 (534)
                          ..|+||||.|+..|+.+++++|+++ +.++|.+|..|+||||+|+..+         ...+.++++.. +.+   .
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~l-l~~~~~~  246 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSL-LDKLRDS  246 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HhccCCh
Confidence                3589999999999999999999985 6678999999999999999886         23345555543 222   3


Q ss_pred             ----cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          256 ----NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       256 ----~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                          +..|++|.||||+|+.  .++.  +++++|++.+.+.
T Consensus       247 ~el~~i~N~~g~TPL~~A~~--~g~~--~l~~lLL~~~~~~  283 (743)
T TIGR00870       247 KELEVILNHQGLTPLKLAAK--EGRI--VLFRLKLAIKYKQ  283 (743)
T ss_pred             HhhhhhcCCCCCCchhhhhh--cCCc--cHHHHHHHHHHhc
Confidence                6789999999999998  7777  8999999866544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.1e-24  Score=241.86  Aligned_cols=243  Identities=19%  Similarity=0.218  Sum_probs=187.7

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHH-HHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALY-ISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~-~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      ..+.+.|+.|++.|+.+.++.+++.....+           ++..|..|.|||| .|+.+++.++++.|++.+.      
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-----------in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN-----------INCPDRLGRSALFVAAIENENLELTELLLNLSC------   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC-----------CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------
Confidence            456799999999999999999998843211           4567889999999 8999999999999999863      


Q ss_pred             cCCCCCcHHHHHHHcC---CHHHHHHHHhhCcc-----cc----ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 009457           88 RSRSDMNTFHVAAKKG---HLGIAKELVSIWPE-----LC----KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRI  155 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g---~~~iv~~Ll~~~~~-----l~----~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  155 (534)
                      .+..|.||||.|+..+   ...+++.+...+++     ..    ...+..|.||||+|+..|+.++++.|+++|++.. .
T Consensus        78 ~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~  156 (743)
T TIGR00870        78 RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-A  156 (743)
T ss_pred             CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-c
Confidence            5778999999998732   22334444443332     11    1123569999999999999999999999998743 2


Q ss_pred             cc--------------cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCC---------CHHHHHH
Q 009457          156 VR--------------KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ---------CPSVVEY  212 (534)
Q Consensus       156 ~d--------------~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g---------~~~iv~~  212 (534)
                      ++              ..|.||||.|+..|+.+++++|++.+++ ++..|..|+||||+|+..+         ...+.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~  235 (743)
T TIGR00870       157 RACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNF  235 (743)
T ss_pred             CcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            21              3589999999999999999999999988 5889999999999999987         2234455


Q ss_pred             hHhcCc--cc----cccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          213 ILSADH--LI----LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       213 Ll~~~~--~~----in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +++...  ..    .+..|.+|.||||+|+..|+.+++++|++. +.+........+.|.+++..
T Consensus       236 l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       236 ALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccCcchHhHhhh
Confidence            554321  12    266799999999999999999999999983 44444455566677766654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=3.1e-25  Score=194.65  Aligned_cols=252  Identities=24%  Similarity=0.261  Sum_probs=212.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      .-..+..++..|-.+.-..+.....               .-.+..|+.-+-.|.+.|+.+++..++..+.... .-.++
T Consensus        31 q~a~~~~~~~m~~t~p~~~l~~~~s---------------~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p   94 (296)
T KOG0502|consen   31 QIAELFEQVEMGTTEPRCALTAEIS---------------ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAI-DETDP   94 (296)
T ss_pred             HHHHHHHHhhccccchhHHHHHHHH---------------HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCC-CCCCc
Confidence            3457888888888888777776532               3356778888889999999999888887654443 33566


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY  170 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  170 (534)
                      +|.+++|.|+-+|+.+.+..++..+... +..+..+.+|+.+++...+.+.+..+.+..   .+..|+.|.|||.+|+..
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhc
Confidence            7999999999999999999999988877 677889999999999999998888777654   567899999999999999


Q ss_pred             CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      |++++|++|++.|++ +....+...++|.+|+..|..++|++|+.. ..++|.-|-+|.|||-+|++.++.++++.|+. 
T Consensus       171 G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~-  247 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN-  247 (296)
T ss_pred             CchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeecCChHHHHHHHHh-
Confidence            999999999999999 688888889999999999999999999996 45669999999999999999999999999999 


Q ss_pred             CCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCC
Q 009457          251 TSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA  290 (534)
Q Consensus       251 ~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga  290 (534)
                      .|++++..+..|++++++|+.+  |+   .+++..+++-+
T Consensus       248 sGAd~t~e~dsGy~~mdlAVal--Gy---r~Vqqvie~h~  282 (296)
T KOG0502|consen  248 SGADVTQEDDSGYWIMDLAVAL--GY---RIVQQVIEKHA  282 (296)
T ss_pred             cCCCcccccccCCcHHHHHHHh--hh---HHHHHHHHHHH
Confidence            5999999999999999999994  43   34444444433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=4.4e-23  Score=230.46  Aligned_cols=177  Identities=22%  Similarity=0.236  Sum_probs=161.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      .+..+.++||.||..|+.++++.|++.+.++ +..|..|.||||+|+..|+.++++.|++++++ .+.+|.+|+||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence            3456778999999999999999999999998 78899999999999999999999999999988 678999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      +..|+.++++.|++.+...   ....|.++||.|+.+|+.+++++|+++ +.++|.+|.+|+||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999876542   235677999999999999999999996 566799999999999999999999999999


Q ss_pred             hccCCccccccccCC-CCHHHHHHH
Q 009457          248 LSYTSIDVNAINNQR-ETAMDLADK  271 (534)
Q Consensus       248 l~~~g~~~~~~n~~g-~t~L~lA~~  271 (534)
                      ++ .|++++..|..| .||++++..
T Consensus       675 l~-~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        675 IM-NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HH-cCCCCCCCCCCCCCCHHHHHHH
Confidence            99 599999999988 999998865

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=2.1e-24  Score=189.39  Aligned_cols=237  Identities=23%  Similarity=0.264  Sum_probs=204.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhcc
Q 009457            9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIR   88 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~   88 (534)
                      ..|+.-+-.|.++|+.+++...+.-.++.            +...+.+|..+++.|+-.|+.+.+..++..+  ...+..
T Consensus        60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~------------~~~t~p~g~~~~~v~ap~~s~~k~sttltN~--~rgnev  125 (296)
T KOG0502|consen   60 ALGESLLTVAVRSGNSDVAVQSAQLDPDA------------IDETDPEGWSALLVAAPCGSVDKVSTTLTNG--ARGNEV  125 (296)
T ss_pred             hcCCcccchhhhcCCcHHHHHhhccCCCC------------CCCCCchhhhhhhhcCCCCCcceeeeeeccc--ccCCcc
Confidence            45677778899999999998888776653            2445677999999999999999999998876  334456


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA  168 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  168 (534)
                      +..+.+|+.+++...+.+.+..+.+   +.++.+|+.|.|||.||+..|++++|++||+.|++ +....+...++|.+|+
T Consensus       126 s~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt  201 (296)
T KOG0502|consen  126 SLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLAT  201 (296)
T ss_pred             ccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHh
Confidence            6778999999999988888777665   34578899999999999999999999999999999 6778888999999999


Q ss_pred             HcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHh
Q 009457          169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL  248 (534)
Q Consensus       169 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll  248 (534)
                      +.|..++|+.|++++++ ++..|-+|-|||.+|++.++.++++.|+.. +.+++..|..|++++.+|+..|+. +|+..+
T Consensus       202 ~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s-GAd~t~e~dsGy~~mdlAValGyr-~Vqqvi  278 (296)
T KOG0502|consen  202 RGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNS-GADVTQEDDSGYWIMDLAVALGYR-IVQQVI  278 (296)
T ss_pred             cCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhc-CCCcccccccCCcHHHHHHHhhhH-HHHHHH
Confidence            99999999999999999 599999999999999999999999999996 667799999999999999999987 777777


Q ss_pred             ccCCccccccccCCCCHHH
Q 009457          249 SYTSIDVNAINNQRETAMD  267 (534)
Q Consensus       249 ~~~g~~~~~~n~~g~t~L~  267 (534)
                      +. -+..+.+|+.-.||+|
T Consensus       279 e~-h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  279 EK-HALKLCQDSEKRTPLH  296 (296)
T ss_pred             HH-HHHHHhhcccCCCCCC
Confidence            73 5677888888888875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.4e-23  Score=214.18  Aligned_cols=242  Identities=22%  Similarity=0.254  Sum_probs=212.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCC-----------hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCC
Q 009457           59 TALYISAANNFQDIFSCLLKFCD-----------VEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT  127 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~-----------~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~  127 (534)
                      +=|.-|+..|+.+.+..|++...           .+..+..|.+|.|+||.|+.+|+.+++++|++..+-+ ..+|..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCc
Confidence            44678999999999999998632           2345677889999999999999999999999998877 77889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCH
Q 009457          128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP  207 (534)
Q Consensus       128 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  207 (534)
                      +|||+|+..|+.++++.++..+ +..+.....|.||||.|+..||.+++.+|++++++ +..+|..+.|+|.+|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhhhh
Confidence            9999999999999999999988 44788899999999999999999999999999999 688999999999999999999


Q ss_pred             HHHHHhHhcCcc-------ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHH
Q 009457          208 SVVEYILSADHL-------ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLE  280 (534)
Q Consensus       208 ~iv~~Ll~~~~~-------~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~  280 (534)
                      ++++.|++..-.       .-..++..+-+|||+|+++|+.++++.|++ .|+++|...++| |+||.|+.  .|..  +
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaal--cgk~--e  235 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAAL--CGKA--E  235 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhh--cCcc--h
Confidence            999999985210       013455678899999999999999999999 599999988777 89999998  7777  9


Q ss_pred             HHHHHHHcCCccccccCChhhHHHHhhhc
Q 009457          281 IKEALAEAGAKHARYVGQVDEAMELKRTV  309 (534)
Q Consensus       281 i~~~L~~~ga~~~~~~~~~~~~~~~~~~~  309 (534)
                      ++.+|++.|......+..+.+++++....
T Consensus       236 vvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  236 VVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hhhHHHhhccccccccccchHHHHHHHhc
Confidence            99999999999988888888888765433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=2.2e-22  Score=224.94  Aligned_cols=178  Identities=16%  Similarity=0.170  Sum_probs=160.7

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        54 n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      +..+.++||.||..|+.++++.|++.+  .+++..|..|+||||+|+..|+.++++.|+++++++ +..|.+|.||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHH
Confidence            345679999999999999999999987  567889999999999999999999999999999988 78899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457          134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI  213 (534)
Q Consensus       134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  213 (534)
                      +..|+.++++.|++.+...   ....|.++||.|+..|+.++++.|++++++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999876542   245678999999999999999999999999 589999999999999999999999999


Q ss_pred             HhcCccccccccCCC-ChHHHHHHHcC
Q 009457          214 LSADHLILNERDKKG-NTAVHIATRKC  239 (534)
Q Consensus       214 l~~~~~~in~~d~~g-~T~Lh~A~~~~  239 (534)
                      +++ +.+++..|..| .||++++....
T Consensus       675 l~~-GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        675 IMN-GADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHc-CCCCCCCCCCCCCCHHHHHHHHH
Confidence            996 56679999888 89998886543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=211.72  Aligned_cols=284  Identities=21%  Similarity=0.189  Sum_probs=215.2

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCc--------------chHHH-------HHhcccCCCCcHHHHH
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGS--------------SLVSE-------LMAMQNDTGETALYIS   64 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~--------------~~~~~-------ll~~~n~~g~T~L~~A   64 (534)
                      .+..+-+|+|-.||+.|+.|.|+.|+.++.+.+..+..              +.+..       +-...|..++|+|-+|
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence            44566788888888888888888888888776533321              11111       1223467788888888


Q ss_pred             HHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccC-CCCCCcHHHHHHHcCCHHHHH
Q 009457           65 AANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC-DSSNTSPLYSAAVQDHLDVVN  143 (534)
Q Consensus        65 a~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~-d~~g~tpLh~Aa~~g~~~~v~  143 (534)
                      |..|+.++|+.||..+  ..-..++-..+|||.+|...|..++++.|+..|.++.... .+.|..||..|..+||.+.++
T Consensus       832 csggr~~vvelLl~~g--ankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~  909 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAG--ANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATL  909 (2131)
T ss_pred             cCCCcchHHHHHHHhh--ccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHH
Confidence            8888888888888776  3344566778888888888888888888888887774433 346888899999999988888


Q ss_pred             HHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCcccccc
Q 009457          144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNE  223 (534)
Q Consensus       144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~  223 (534)
                      .|++.+.++.....-+-+|+|-+|+..|..++|..||...++ ++.+-+.|.|||+-++..|.+++-+.|+..+. +.|.
T Consensus       910 ~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~~ga-d~na  987 (2131)
T KOG4369|consen  910 SLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGA-DTNA  987 (2131)
T ss_pred             HHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhhccc-cccc
Confidence            888888886666677788899999999999999999988887 58888999999999999999999999998643 3332


Q ss_pred             --ccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCC
Q 009457          224 --RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQ  298 (534)
Q Consensus       224 --~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  298 (534)
                        .-....|+|-+++..|+.+.+..|+. +.+.+..+|++|.|+|.+|+.  -+..  ..+.+|++++++....++.
T Consensus       988 sPvp~T~dtalti~a~kGh~kfv~~lln-~~atv~v~NkkG~T~Lwla~~--Gg~l--ss~~il~~~~ad~d~qdnr 1059 (2131)
T KOG4369|consen  988 SPVPNTWDTALTIPANKGHTKFVPKLLN-GDATVRVPNKKGCTVLWLASA--GGAL--SSCPILVSSVADADQQDNR 1059 (2131)
T ss_pred             CCCCCcCCccceeecCCCchhhhHHhhC-CccceecccCCCCcccchhcc--CCcc--ccchHHhhcccChhhhhcc
Confidence              22345578888888888888888887 577788888888888888876  4444  6778888888877655443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=2.2e-21  Score=191.93  Aligned_cols=230  Identities=24%  Similarity=0.328  Sum_probs=180.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCC
Q 009457           12 HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRS   91 (534)
Q Consensus        12 ~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   91 (534)
                      .-.+..|++.|+.+-+..++..+..+             +..|.+|.|+||-|+...+.+||++|++++  .+++..|..
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~ga~~-------------~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e  105 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRGASP-------------NLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNE  105 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccCCCc-------------cccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccc
Confidence            34677888999999999999887652             567888999999999999999999999987  667888889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |+||||.|+.+||.+++++|+..++++ ...+.+|..|+..+...-..++...-....          |-+ +..+-...
T Consensus       106 ~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~----------gi~-iea~R~~~  173 (527)
T KOG0505|consen  106 GWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQ----------GID-IEAARKAE  173 (527)
T ss_pred             cCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHh----------ccc-HHHHhhhh
Confidence            999999999999999999999999988 456888888888776555544444333221          111 11111111


Q ss_pred             CHHH---HHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHh
Q 009457          172 LINI---VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL  248 (534)
Q Consensus       172 ~~~i---v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll  248 (534)
                      ...+   ++..+..+.. ....+..|-|.||+|+.+|..++.++|+++ +..++.+|.+|+||||.|+..|+.+++++|+
T Consensus       174 e~~ml~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a-g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~  251 (527)
T KOG0505|consen  174 EQTMLDDARQWLNAGAE-LDARHARGATALHVAAANGYTEVAALLLQA-GYSVNIKDYDGWTPLHAAAHWGQEDACELLV  251 (527)
T ss_pred             HHHHHHHHHHHHhcccc-ccccccccchHHHHHHhhhHHHHHHHHHHh-ccCcccccccCCCcccHHHHhhhHhHHHHHH
Confidence            1111   2233335655 467777799999999999999999999997 5556999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCHHHHHHH
Q 009457          249 SYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       249 ~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ++ |++.+..+..|.||+++|..
T Consensus       252 ~~-ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  252 EH-GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             Hh-hcccchhhhcCCCCccchhh
Confidence            95 99999999999999999987

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=2.1e-21  Score=182.74  Aligned_cols=160  Identities=29%  Similarity=0.322  Sum_probs=97.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc-----CCHHHHHHHHhcCCccceec-CCC
Q 009457          120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY-----GLINIVTALIDRDPEIVTIK-DKK  193 (534)
Q Consensus       120 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~-d~~  193 (534)
                      +..|.+|+|+||||+.++++++|+.||+.+....+..++-|+||+.+++..     .+.++|..|...+..  |.+ ...
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV--NaKAsQ~  339 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV--NAKASQH  339 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc--chhhhhh
Confidence            345666666666666666666666666666555555666666666665532     345566666655432  222 245


Q ss_pred             CchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHcc
Q 009457          194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQ  273 (534)
Q Consensus       194 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~  273 (534)
                      |+|+|++|+.+|+.++|+.||.. +.++|.+|.+|.|+|++|+.+|+.+|+++||..+++|+...|.+|-|+|.+|-.  
T Consensus       340 gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle--  416 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE--  416 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh--
Confidence            66666666666666666666653 455566666666666666666666666666666666666666666666666666  


Q ss_pred             CCCCHHHHHHHHH
Q 009457          274 YGDSTLEIKEALA  286 (534)
Q Consensus       274 ~~~~~~~i~~~L~  286 (534)
                      .|+.  +|.-+|.
T Consensus       417 agh~--eIa~mlY  427 (452)
T KOG0514|consen  417 AGHR--EIAVMLY  427 (452)
T ss_pred             cCch--HHHHHHH
Confidence            5555  5554444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=3.3e-21  Score=181.39  Aligned_cols=165  Identities=22%  Similarity=0.298  Sum_probs=150.5

Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCccccccc
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ-----DHLDVVNTILDADVSCTRIVRK  158 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d~  158 (534)
                      .++..|.+|+|+||+|+.++|+++|+.|++.+..-++..|.-|.||+++++..     .+.++|..|...|.- .-....
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chhhhh
Confidence            36778999999999999999999999999999887789999999999999864     467899999987754 223456


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHc
Q 009457          159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK  238 (534)
Q Consensus       159 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~  238 (534)
                      .|.|+|.+|+.+|+.++|+.||..+++ +|.+|.+|.|+|++|+++|+.|++++||.....++..+|.+|.|+|.+|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            799999999999999999999999999 6999999999999999999999999999988889999999999999999999


Q ss_pred             CCHHHHHHHhcc
Q 009457          239 CRPQIVSLLLSY  250 (534)
Q Consensus       239 ~~~~iv~~Ll~~  250 (534)
                      |+.+|.-+|..+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999999998875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.84  E-value=5.5e-21  Score=200.39  Aligned_cols=231  Identities=21%  Similarity=0.246  Sum_probs=207.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457           55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA  134 (534)
Q Consensus        55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa  134 (534)
                      .+-+|+|..||..||.|+|+.|+.+|  ..+..+|+.|.+||.+|+..||..+|+.|+.+.+++....|..+.|+|-+||
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rg--aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRG--ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhc--ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            45689999999999999999999988  5677889999999999999999999999999999998889999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC--CCCchHHHHHHhCCCHHHHHH
Q 009457          135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD--KKGQTALHMAVKGQCPSVVEY  212 (534)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~iv~~  212 (534)
                      ..|+.++|+.||..++. ...++-...|||.+|...|..+++..|+..|.++ +.+.  +.|-.||++|..+|+....+.
T Consensus       833 sggr~~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~GseI-nSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEI-NSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             CCCcchHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhccccc-ccccccccCcchhhhhhhccccHHHHH
Confidence            99999999999999988 5668888999999999999999999999999885 4443  578899999999999999999


Q ss_pred             hHhcCccccccc-cCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          213 ILSADHLILNER-DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       213 Ll~~~~~~in~~-d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      |++. +.++|.. .-+-||+|-+|+-.|+.+++.+||.. .+++..+-+.|.|||.-++.  .|..  ++-.+|+.+||+
T Consensus       911 ll~~-gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~As--gGyv--dvg~~li~~gad  984 (2131)
T KOG4369|consen  911 LLQP-GSDINAQIETNRNTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMAS--GGYV--DVGNLLIAAGAD  984 (2131)
T ss_pred             Hhcc-cchhccccccccccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhc--CCcc--ccchhhhhcccc
Confidence            9996 5555654 45678999999999999999999994 88999999999999999888  6666  888999999998


Q ss_pred             cccc
Q 009457          292 HARY  295 (534)
Q Consensus       292 ~~~~  295 (534)
                      ....
T Consensus       985 ~nas  988 (2131)
T KOG4369|consen  985 TNAS  988 (2131)
T ss_pred             cccC
Confidence            7543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=8.1e-20  Score=164.31  Aligned_cols=138  Identities=16%  Similarity=0.212  Sum_probs=85.3

Q ss_pred             CCCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH---HHHHHHhcCCccceecC-CCC
Q 009457          123 DSSNTSPLYSAAVQDHL----DVVNTILDADVSCTRIVRKNGKTALHTAARYGLIN---IVTALIDRDPEIVTIKD-KKG  194 (534)
Q Consensus       123 d~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~d-~~g  194 (534)
                      +.++.++||.|+..|+.    +++++|++.+.. .+.+|..|+||||+|+..|+.+   ++++|++.+++ ++.+| ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCC
Confidence            44555566666666655    334444444443 3445666666666666665543   35666666666 35555 367


Q ss_pred             chHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCC
Q 009457          195 QTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRE  263 (534)
Q Consensus       195 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~  263 (534)
                      +||||+|+..++.+++++|+...+.+++.+|..|.||||+|+..++.+++++|+++ |++++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCCc
Confidence            77777777777777777776433555566777777777777777777777777763 667776666654

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=2e-19  Score=162.45  Aligned_cols=135  Identities=16%  Similarity=0.211  Sum_probs=95.6

Q ss_pred             HHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcC----ChhhhhccCCCCCcHHHHHHHcCC----HHHHHHHHhhCcccc
Q 009457           48 ELMAMQNDTGETALYISAANNFQDIFSCLLKFC----DVEIVKIRSRSDMNTFHVAAKKGH----LGIAKELVSIWPELC  119 (534)
Q Consensus        48 ~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~----~~~~~~~~~~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~l~  119 (534)
                      .+++.+|..|.||||+|++.|+.++++.|+...    ...+++.+|..|.||||+|+..|+    .+++++|++.++++ 
T Consensus        12 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-   90 (169)
T PHA02741         12 EMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-   90 (169)
T ss_pred             HHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-
Confidence            345567778888888888888888888775421    124456677778888888887777    46777777777776 


Q ss_pred             ccCCC-CCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          120 KSCDS-SNTSPLYSAAVQDHLDVVNTILDA-DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       120 ~~~d~-~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      +..|. .|.||||+|+..++.+++++|++. +.+ .+..|.+|+||||+|+..|+.++++.|++.+.
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            44453 777777777777777777777763 555 55667777777777777777777777776543

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=1.7e-19  Score=162.92  Aligned_cols=130  Identities=22%  Similarity=0.368  Sum_probs=81.7

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhc------CCccceecCCCCchHHHHHHhCCC----HHHHHHhHhcCcccccccc
Q 009457          156 VRKNGKTALHTAARYGLINIVTALIDR------DPEIVTIKDKKGQTALHMAVKGQC----PSVVEYILSADHLILNERD  225 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~in~~d  225 (534)
                      +|..|.||||+|++.|+.++++.|+..      +++ ++.+|..|+||||+|+..|+    .+++++|++. +.++|.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCCC
Confidence            445566666666666666666665432      233 35566667777777776666    3566666664 34456666


Q ss_pred             C-CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          226 K-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       226 ~-~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      . .|+||||+|+..++.+++++|+...|++++.+|.+|.||||+|..  .++.  +++++|++.++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~--~~~~--~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID--NEDV--AMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH--CCCH--HHHHHHHHHHHH
Confidence            4 677777777777777777777654466777777777777777766  4444  666666666544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.4e-19  Score=153.41  Aligned_cols=142  Identities=28%  Similarity=0.287  Sum_probs=127.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCH
Q 009457          128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP  207 (534)
Q Consensus       128 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  207 (534)
                      --+.+|+..+....|+.||+..++..+.+|.+|.||||-|+.+|+.+||+.|+..+++ .+.+...|+||||-|++..+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccch
Confidence            3467899999999999999999999999999999999999999999999999999998 688999999999999999999


Q ss_pred             HHHHHhHhcCccccccccCCCChHHHHHHHcCCH-HHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          208 SVVEYILSADHLILNERDKKGNTAVHIATRKCRP-QIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       208 ~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~-~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +++-.|+++ +.++|.+.....||||+|+..++. ..+++|+..+++++..+++.+.||+++|.+
T Consensus       144 ~va~~LLqh-gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  144 EVAGRLLQH-GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             hHHHHHHhc-cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            999999996 667799888888999999977654 566788887899999999999999999988

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=3.5e-18  Score=177.35  Aligned_cols=191  Identities=23%  Similarity=0.283  Sum_probs=160.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCC-------hhhhhccCCCCCcHHHHHHHc---CCHHHHHHHHhhCccccccC----CC
Q 009457           59 TALYISAANNFQDIFSCLLKFCD-------VEIVKIRSRSDMNTFHVAAKK---GHLGIAKELVSIWPELCKSC----DS  124 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~-------~~~~~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~l~~~~----d~  124 (534)
                      .++..|...+..+....|+..+.       ..+++.+...|+|.||.|..+   ++.++++.|++..|++++..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67788888888888888776542       123445567899999999874   45699999999999875533    34


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccc-----------ccc-----------cCCCcHHHHHHHcCCHHHHHHHHhc
Q 009457          125 SNTSPLYSAAVQDHLDVVNTILDADVSCTR-----------IVR-----------KNGKTALHTAARYGLINIVTALIDR  182 (534)
Q Consensus       125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-----------~~d-----------~~g~tpLh~A~~~g~~~iv~~Ll~~  182 (534)
                      .|.||||.|+.+.+.++|++|++.|++...           .+.           ..|..||-.||..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            799999999999999999999999887411           111           2478999999999999999999999


Q ss_pred             CCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCcc-ccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL-ILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       183 ~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~-~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      ++| ++.+|.+|+|.||+.+..-..++..++++.++. +...+|++|-|||-+|++.|+.++++.+++.
T Consensus       263 gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999 699999999999999999999999999997654 3578899999999999999999999999985

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=8.2e-19  Score=157.77  Aligned_cols=139  Identities=10%  Similarity=0.061  Sum_probs=80.0

Q ss_pred             hcccCCCCcHHHHHHHcCCH----HHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHH---HHHHHhhCccccccCC
Q 009457           51 AMQNDTGETALYISAANNFQ----DIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGI---AKELVSIWPELCKSCD  123 (534)
Q Consensus        51 ~~~n~~g~T~L~~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~i---v~~Ll~~~~~l~~~~d  123 (534)
                      ...+.++.++||.|++.|+.    +++++|++.+  ..++..|..|+||||+|+..|+.+.   +++|++.++++ +.+|
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d   90 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARE   90 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCC
Confidence            33445566666666666665    3444444443  3345556666666666666665433   56666666655 3444


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCC
Q 009457          124 -SSNTSPLYSAAVQDHLDVVNTILD-ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG  194 (534)
Q Consensus       124 -~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  194 (534)
                       ..|.||||+|+..|+.+++++|++ .+.+ .+.++..|.||||+|+..++.+++++|++++++. +.++..|
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~  161 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIG  161 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCC
Confidence             356666666666666666666663 4544 3455666666666666666666666666666552 4444333

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=4.7e-19  Score=157.70  Aligned_cols=98  Identities=13%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             HhcccCCCCcHHHHHHHcCCHH---HHHHHHhcCChhhhhccC-CCCCcHHHHHHHcCCHHHHHHHHhh-CccccccCCC
Q 009457           50 MAMQNDTGETALYISAANNFQD---IFSCLLKFCDVEIVKIRS-RSDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDS  124 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~---iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~l~~~~d~  124 (534)
                      +...|..|.||||+|+..|+.+   +++.|++.+  .+++.++ ..|.||||+|+..|+.+++++|++. +.++ +..|.
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g--adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~  124 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG--ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNY  124 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC--CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccC
Confidence            3444555555555555555442   344555544  2334443 2455555555555555555555542 3333 34455


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          125 SNTSPLYSAAVQDHLDVVNTILDADV  150 (534)
Q Consensus       125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~  150 (534)
                      .|.||||+|+..|+.+++++|++.++
T Consensus       125 ~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736        125 AFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            55555555555555555555555443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.6e-18  Score=167.95  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=86.1

Q ss_pred             cCCCCCc-HHHHHHHcCCHHHHHHHHhhCccccccC----CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc-ccCCC
Q 009457           88 RSRSDMN-TFHVAAKKGHLGIAKELVSIWPELCKSC----DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV-RKNGK  161 (534)
Q Consensus        88 ~~~~g~t-~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~----d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~  161 (534)
                      +|..|+| +||.|+..|+.+++++|+++|+++ +..    |..|.||||+|+..|+.+++++|+++|++ .+.. +..|.
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~  105 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKI  105 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCC
Confidence            4455544 345555556666666666666665 232    34566666666666666666666666665 3332 34566


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH
Q 009457          162 TALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP  241 (534)
Q Consensus       162 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~  241 (534)
                      ||||.|+..|+.+++++|++.+++ ++.+|..|.||||+|++.++.+++..+..      +..+..+.+|++++   ++.
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~  175 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INF  175 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccH
Confidence            666666666666666666666666 35566666666666666655555443331      12344455555543   245


Q ss_pred             HHHHHHhcc
Q 009457          242 QIVSLLLSY  250 (534)
Q Consensus       242 ~iv~~Ll~~  250 (534)
                      +++++|+++
T Consensus       176 ei~~~Lish  184 (300)
T PHA02884        176 DILKILVSH  184 (300)
T ss_pred             HHHHHHHHH
Confidence            555555553

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3e-18  Score=166.13  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=130.5

Q ss_pred             HhcccCCCCc-HHHHHHHcCCHHHHHHHHhcCChhhhhcc----CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCC
Q 009457           50 MAMQNDTGET-ALYISAANNFQDIFSCLLKFCDVEIVKIR----SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS  124 (534)
Q Consensus        50 l~~~n~~g~T-~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~----~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~  124 (534)
                      +..+|..|.| +||.|+..|+.++++.|+++|  .+++..    +..|.||||+|+..|+.+++++|+++|+++....+.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC
Confidence            4556777765 677777789999999999998  455655    458999999999999999999999999998433466


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhC
Q 009457          125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG  204 (534)
Q Consensus       125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  204 (534)
                      .|.||||.|+..|+.+++++|++.|++ .+.+|.+|.||||+|++.++.+++..+...      ..+..+.+|++.+   
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL---  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh---
Confidence            899999999999999999999999998 677999999999999999999988666532      2466778888875   


Q ss_pred             CCHHHHHHhHhcC
Q 009457          205 QCPSVVEYILSAD  217 (534)
Q Consensus       205 g~~~iv~~Ll~~~  217 (534)
                      ++.++++.|+.+.
T Consensus       173 ~n~ei~~~Lish~  185 (300)
T PHA02884        173 INFDILKILVSHF  185 (300)
T ss_pred             ccHHHHHHHHHHH
Confidence            4689999998863

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=2e-18  Score=153.67  Aligned_cols=135  Identities=14%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             HHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcC-----ChhhhhccCCCCCcHHHHHHHcCCH---HHHHHHHhhCccc
Q 009457           47 SELMAMQNDTGETALYISAANNFQDIFSCLLKFC-----DVEIVKIRSRSDMNTFHVAAKKGHL---GIAKELVSIWPEL  118 (534)
Q Consensus        47 ~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~-----~~~~~~~~~~~g~t~Lh~Aa~~g~~---~iv~~Ll~~~~~l  118 (534)
                      ..+.+.+|..|.||||+|++.|+.  ++.+....     ....+...|..|.||||+|+..|+.   +++++|++.++++
T Consensus         7 ~~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736          7 IIFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             hhHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            456778888999999999999984  23322211     1122445678899999999988876   4678888888887


Q ss_pred             cccCC-CCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q 009457          119 CKSCD-SSNTSPLYSAAVQDHLDVVNTILDA-DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE  185 (534)
Q Consensus       119 ~~~~d-~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  185 (534)
                       +..| ..|.||||+|+..|+.+++++|+.. +.+ .+.+|..|.||||+|+..|+.+++++|++.+++
T Consensus        85 -n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         85 -NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             -cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             4555 5888999999988999999888874 555 567888888999999888888888888888765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=2.2e-18  Score=170.80  Aligned_cols=226  Identities=19%  Similarity=0.255  Sum_probs=168.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCH
Q 009457           60 ALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHL  139 (534)
Q Consensus        60 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~  139 (534)
                      .+.-|+..|..+-|+.|+..+  ...+..|.+|.|+||-|+.-.+.+||++|+++++++ +..|..|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            456677888899999999876  445778889999999999999999999999999988 67788999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC-ccceecCCCCchHHHHHHhCCCHHHHHHhHhcCc
Q 009457          140 DVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP-EIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH  218 (534)
Q Consensus       140 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  218 (534)
                      +++++|+..+++. ...+.+|..|+..+..--..++...-..... ++-..+...-++-|+        ++-.++.  .+
T Consensus       120 ~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q~l~--~G  188 (527)
T KOG0505|consen  120 NIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQWLN--AG  188 (527)
T ss_pred             HHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHHHHh--cc
Confidence            9999999998884 4577888888887765544444443332211 110001111111111        2222333  35


Q ss_pred             cccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCC
Q 009457          219 LILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQ  298 (534)
Q Consensus       219 ~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~  298 (534)
                      ...+..+..|.|+||.|+.+|..++.++|++. |.+++.+|.+|.||||.|+.  .+..  +++++|+++|++.......
T Consensus       189 ~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a-g~~~~~~D~dgWtPlHAAA~--Wg~~--~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  189 AELDARHARGATALHVAAANGYTEVAALLLQA-GYSVNIKDYDGWTPLHAAAH--WGQE--DACELLVEHGADMDAKTKM  263 (527)
T ss_pred             ccccccccccchHHHHHHhhhHHHHHHHHHHh-ccCcccccccCCCcccHHHH--hhhH--hHHHHHHHhhcccchhhhc
Confidence            55577777799999999999999999999995 99999999999999999998  7776  8999999999988765555


Q ss_pred             hhhHHH
Q 009457          299 VDEAME  304 (534)
Q Consensus       299 ~~~~~~  304 (534)
                      +..+++
T Consensus       264 g~~p~d  269 (527)
T KOG0505|consen  264 GETPLD  269 (527)
T ss_pred             CCCCcc
Confidence            444433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=8.6e-18  Score=142.65  Aligned_cols=143  Identities=24%  Similarity=0.327  Sum_probs=127.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q 009457           95 TFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLIN  174 (534)
Q Consensus        95 ~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  174 (534)
                      -+-+|+..+....|+.|++..++.++.+|.+|.||||.|+.+|+.++++.|+..+++ .+.+...|+||||.||.-.+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchh
Confidence            356899999999999999999999999999999999999999999999999999998 6788999999999999999999


Q ss_pred             HHHHHHhcCCccceecCCCCchHHHHHHhCCCH-HHHHHhHhcCccccccccCCCChHHHHHHHcC
Q 009457          175 IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP-SVVEYILSADHLILNERDKKGNTAVHIATRKC  239 (534)
Q Consensus       175 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~  239 (534)
                      ++-.|++++++ ++.......||||+|+...+. ..+++|+.........++..+.||+.+|-+.+
T Consensus       145 va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999 588888999999999987665 46777777555566777888999999997654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=7.1e-18  Score=154.21  Aligned_cols=117  Identities=29%  Similarity=0.330  Sum_probs=106.8

Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH
Q 009457          152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA  231 (534)
Q Consensus       152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~  231 (534)
                      ..+.-|..|.+|||+|++.|+..+++.|+++++. ++..+....||||+|+.+|+.++|+.|++. ..++|..+..|+||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~-kadvnavnehgntp  103 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSR-KADVNAVNEHGNTP  103 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHH-hcccchhhccCCCc
Confidence            3667788899999999999999999999999988 588888889999999999999999999985 56779999999999


Q ss_pred             HHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          232 VHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       232 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ||+|+..|...+.+-|+. .|+.++..|+.|.||++.|..
T Consensus       104 lhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhch
Confidence            999999999999999999 599999999999999998864

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=1.6e-15  Score=157.72  Aligned_cols=191  Identities=21%  Similarity=0.259  Sum_probs=156.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCc--------cccccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccc----
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWP--------ELCKSCDSSNTSPLYSAAVQ---DHLDVVNTILDADVSCTRI----  155 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~--------~l~~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~----  155 (534)
                      ..+.++..|...+..+....++....        .-.+.+...|.|.||.|..+   ++.++++.|++.-+...+.    
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~  179 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS  179 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh
Confidence            33467788888888887777776552        11245567899999999974   5679999999876544332    


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCCcccee---------cC--------------CCCchHHHHHHhCCCHHHHHH
Q 009457          156 VRKNGKTALHTAARYGLINIVTALIDRDPEIVTI---------KD--------------KKGQTALHMAVKGQCPSVVEY  212 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~---------~d--------------~~g~t~Lh~A~~~g~~~iv~~  212 (534)
                      ....|.||||+|+.+.+.++|+.|++.++|. +.         .|              ..|+.||-+||.-++.|++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            2356999999999999999999999999884 32         11              137789999999999999999


Q ss_pred             hHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcc--ccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc
Q 009457          213 ILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID--VNAINNQRETAMDLADKLQYGDSTLEIKEALAEA  288 (534)
Q Consensus       213 Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~--~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~  288 (534)
                      |+++ +++++.+|.+|||.||..+..-..++..+++++ |++  ...+|++|.|||.+|++  .|..  ++.+.+++.
T Consensus       259 Ll~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~-ga~~l~~v~N~qgLTPLtLAak--lGk~--emf~~ile~  330 (782)
T KOG3676|consen  259 LLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL-GANALEHVRNNQGLTPLTLAAK--LGKK--EMFQHILER  330 (782)
T ss_pred             HHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhc-CCCccccccccCCCChHHHHHH--hhhH--HHHHHHHHh
Confidence            9995 778899999999999999999999999999995 788  88999999999999999  6766  887777766

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=5e-15  Score=125.99  Aligned_cols=117  Identities=33%  Similarity=0.533  Sum_probs=44.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |.||||.|+..|+.+++++|++.++.. ...+..|.||||.|+..++.+++++|++.+.. .+..+..|.||+|.|++.+
T Consensus         7 g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           7 GRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcC
Confidence            344444444444444444444433332 22333334444444444444444444433322 2223333334444444444


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE  211 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  211 (534)
                      +.+++++|++.+.+ .+..+..|.||+++|...++.++++
T Consensus        85 ~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~  123 (126)
T cd00204          85 NLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVK  123 (126)
T ss_pred             cHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHH
Confidence            44444444433322 1223333333333333333333333

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=5.1e-15  Score=125.95  Aligned_cols=124  Identities=31%  Similarity=0.469  Sum_probs=111.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS  132 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~  132 (534)
                      .|.+|.||||.|+..|+.+++++|++.+.  .....+..|.+|||.|+..++.+++++|++.++.. +..+..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~--~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCC--CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence            46789999999999999999999999873  33667889999999999999999999999999766 5667899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Q 009457          133 AAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI  180 (534)
Q Consensus       133 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  180 (534)
                      |+..++.+++++|++.+.. .+..+..|.||++.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999998866 5567889999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-15  Score=140.04  Aligned_cols=115  Identities=31%  Similarity=0.448  Sum_probs=72.7

Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcH
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTA  163 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  163 (534)
                      +++..|..|.+|||+|++.||..+++.|+.+|+.+ +..+....||||+|+..||.++|+.|++..++ .+..+..|.||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kad-vnavnehgntp  103 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD-VNAVNEHGNTP  103 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhcc-cchhhccCCCc
Confidence            34555566666666666666666666666666665 45555556666666666666666666666665 45566666666


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHH
Q 009457          164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA  201 (534)
Q Consensus       164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  201 (534)
                      ||+||.-|...+.+-|+..++. ++..+++|.|||..|
T Consensus       104 lhyacfwgydqiaedli~~ga~-v~icnk~g~tpldka  140 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhh
Confidence            6666666666666666666665 466666666666544

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=5.4e-15  Score=118.42  Aligned_cols=83  Identities=33%  Similarity=0.464  Sum_probs=34.5

Q ss_pred             HHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHH
Q 009457           97 HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIV  176 (534)
Q Consensus        97 h~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  176 (534)
                      |.|++.|+.+++++|++.++++..     |.||||+|+..|+.+++++|++.+++ .+.+|.+|+||||+|+..|+.+++
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHHH
Confidence            444444444444444444333311     34444444444444444444444443 233344444444444444444444


Q ss_pred             HHHHhcCCc
Q 009457          177 TALIDRDPE  185 (534)
Q Consensus       177 ~~Ll~~~~~  185 (534)
                      ++|++++++
T Consensus        76 ~~Ll~~g~~   84 (89)
T PF12796_consen   76 KLLLEHGAD   84 (89)
T ss_dssp             HHHHHTTT-
T ss_pred             HHHHHcCCC
Confidence            444444433

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=4.7e-15  Score=118.76  Aligned_cols=89  Identities=38%  Similarity=0.555  Sum_probs=61.5

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHH
Q 009457          164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQI  243 (534)
Q Consensus       164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~i  243 (534)
                      ||+|++.|+.+++++|++.++++ +.    |+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|+.+++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHHH
Confidence            57777777777777777766553 22    67777777777777777777775 44557777777777777777777777


Q ss_pred             HHHHhccCCccccccc
Q 009457          244 VSLLLSYTSIDVNAIN  259 (534)
Q Consensus       244 v~~Ll~~~g~~~~~~n  259 (534)
                      +++|+++ |++++.+|
T Consensus        75 ~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHT-TT-TTSS-
T ss_pred             HHHHHHc-CCCCCCcC
Confidence            7777774 77776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=6.4e-13  Score=125.55  Aligned_cols=129  Identities=29%  Similarity=0.397  Sum_probs=94.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC-----HHHHHHHHhcCC--ccceecCC
Q 009457          120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL-----INIVTALIDRDP--EIVTIKDK  192 (534)
Q Consensus       120 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~  192 (534)
                      ...+..+.+++|.++..+..+++.+++..+.+. +.++..|.||||+|+..|+     .++++.|++.++  +.....|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            344556777777777777777777777777774 6777777777777777777     777777777777  44566677


Q ss_pred             CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          193 KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       193 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      .|+||||+|+..|+.++++.|++. +..++..+..|.|++|.|+..++.+++..++..
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            777777777777777777777775 444566677777777777777777777777774

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.44  E-value=2.7e-12  Score=121.27  Aligned_cols=131  Identities=34%  Similarity=0.411  Sum_probs=120.1

Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCC-----HHHHHHhHhcCc--ccccccc
Q 009457          153 TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-----PSVVEYILSADH--LILNERD  225 (534)
Q Consensus       153 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~iv~~Ll~~~~--~~in~~d  225 (534)
                      ....+..+.+++|.++..+..+++++++..+.+. +.+|..|.||||+|+..++     .++++.|++.+.  ...+.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            3456777899999999999999999999999995 9999999999999999999     999999999877  5778889


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcC
Q 009457          226 KKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAG  289 (534)
Q Consensus       226 ~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~g  289 (534)
                      ..|+||||+|+..|+.+++++|++. |.+++..|..|.|+++.|..  .+..  ++...+.+.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~--~~~~--~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAK--NGRI--ELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcc--cchH--HHHHHHHhcC
Confidence            9999999999999999999999995 99999999999999999998  6666  8888888876

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.35  E-value=4.7e-12  Score=96.49  Aligned_cols=99  Identities=23%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHH
Q 009457           61 LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLD  140 (534)
Q Consensus        61 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~  140 (534)
                      ..+++++|..+-|+..+..+  .+++- ...|++|||+|+..|..+++++|+..++++ +..|+.|.|||..|+..||.+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g--~nVn~-~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEG--LNVNE-IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcc--ccHHH-HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHH
Confidence            34455555555555554443  11111 124555555555555555555555555555 455555666666666666666


Q ss_pred             HHHHHHhcCCCcccccccCCCcHH
Q 009457          141 VVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      +|++||+.|++ -..+..+|.+.+
T Consensus        82 cVklLL~~GAd-rt~~~PdG~~~~  104 (117)
T KOG4214|consen   82 CVKLLLQNGAD-RTIHAPDGTALI  104 (117)
T ss_pred             HHHHHHHcCcc-cceeCCCchhHH
Confidence            66666655555 334445554433

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.35  E-value=4.5e-12  Score=96.59  Aligned_cols=106  Identities=21%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH
Q 009457          162 TALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP  241 (534)
Q Consensus       162 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~  241 (534)
                      .-+.++.++|.++-|+..+..+-+ ++.. ..|++|||+|+..|+.+++++|+.. +..++.+|+.|-|||.-|++.|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n-Vn~~-~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN-VNEI-YGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc-HHHH-hCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhH
Confidence            345677888888888888777744 2322 3788999999999999999999886 556688899999999999999999


Q ss_pred             HHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          242 QIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       242 ~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ++|++|++ .|++....-.+|.+.++.+..
T Consensus        81 ~cVklLL~-~GAdrt~~~PdG~~~~eate~  109 (117)
T KOG4214|consen   81 DCVKLLLQ-NGADRTIHAPDGTALIEATEE  109 (117)
T ss_pred             HHHHHHHH-cCcccceeCCCchhHHhhccH
Confidence            99999998 488888888888887765543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.6e-12  Score=93.70  Aligned_cols=56  Identities=34%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             hHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHH
Q 009457          213 ILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA  269 (534)
Q Consensus       213 Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA  269 (534)
                      |+++++.+++.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            4555557788999999999999999999999999996 6899999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.3e-11  Score=113.40  Aligned_cols=124  Identities=26%  Similarity=0.286  Sum_probs=112.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457           56 TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV  135 (534)
Q Consensus        56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~  135 (534)
                      .-+.||..++..|..+-...|++.  ...++..|..|.++|..|+..|+.++++.|++.+++++...+..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            346799999999999999999985  366788999999999999999999999999999999988889999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q 009457          136 QDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR  182 (534)
Q Consensus       136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  182 (534)
                      .|+.++.+.|++.|+. ....+.-|+|+-..|+.-|+.++|..+-..
T Consensus        89 SGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999988 677889999999999999999998776543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=1.8e-11  Score=87.62  Aligned_cols=52  Identities=29%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHH
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTI  145 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~L  145 (534)
                      +||||+|++.|+.+++++|++++.++ +..|.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34444444444444444444444443 22244444444444444444444443

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.23  E-value=2.3e-11  Score=87.16  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=7.0

Q ss_pred             ccccCCCChHHHHHHHcCCHHHHH
Q 009457          222 NERDKKGNTAVHIATRKCRPQIVS  245 (534)
Q Consensus       222 n~~d~~g~T~Lh~A~~~~~~~iv~  245 (534)
                      |.+|.+|+||||+|+..|+.++++
T Consensus        28 n~~d~~g~t~lh~A~~~g~~~~~~   51 (54)
T PF13637_consen   28 NAQDEDGRTPLHYAAKNGNIDIVK   51 (54)
T ss_dssp             T-B-TTS--HHHHHHHTT-HHHHH
T ss_pred             CCCCCCCCCHHHHHHHccCHHHHH
Confidence            333333333333333333333333

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.22  E-value=8.6e-11  Score=128.21  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH  138 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~  138 (534)
                      +.|+.|+..|+.+.++.|++.+  .+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            3588889999999999999876  556778888999999999999999999999998887 6778899999999999999


Q ss_pred             HHHHHHHHhc-------CCCcccccccCCCcHHHHH
Q 009457          139 LDVVNTILDA-------DVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus       139 ~~~v~~Ll~~-------~~~~~~~~d~~g~tpLh~A  167 (534)
                      .+++++|+++       +++ .+..+..|.+|+..+
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHHhCCCcccccCCC-CCccccCCCCccchh
Confidence            9999999887       444 334555566665544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=3.6e-11  Score=118.90  Aligned_cols=115  Identities=24%  Similarity=0.264  Sum_probs=68.1

Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457          132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE  211 (534)
Q Consensus       132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  211 (534)
                      -|+..|.+|+|+..+..-.+ ....+..|-|+||-|+..||++||++|++.+.+ ++..|.+||||||+|+..++..+++
T Consensus       556 DaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHH
Confidence            35556666666666554433 344556666666666666666666666666666 4666666666666666666666666


Q ss_pred             HhHhcCccccccccCCCChHHHHHH--HcCCHHHHHHHh
Q 009457          212 YILSADHLILNERDKKGNTAVHIAT--RKCRPQIVSLLL  248 (534)
Q Consensus       212 ~Ll~~~~~~in~~d~~g~T~Lh~A~--~~~~~~iv~~Ll  248 (534)
                      .|++.++++.-.+-.++.|+..-.-  ..|..++.++|.
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            6666655555555555556554332  334555555554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.22  E-value=6.1e-11  Score=129.37  Aligned_cols=105  Identities=21%  Similarity=0.250  Sum_probs=91.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q 009457           95 TFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLIN  174 (534)
Q Consensus        95 ~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  174 (534)
                      .|+.|+..|+.++++.|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            488899999999999999999988 67799999999999999999999999999988 6789999999999999999999


Q ss_pred             HHHHHHhc-------CCccceecCCCCchHHHHHH
Q 009457          175 IVTALIDR-------DPEIVTIKDKKGQTALHMAV  202 (534)
Q Consensus       175 iv~~Ll~~-------~~~~~~~~d~~g~t~Lh~A~  202 (534)
                      ++++|+++       +++ .+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            99999988       555 3556666777665443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=3.6e-11  Score=118.93  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=83.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHH
Q 009457           61 LYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLD  140 (534)
Q Consensus        61 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~  140 (534)
                      |.-|+..|.+|+|+..+..-  .+....|..|-|+||-|+-.||.+||++|++.+.++ +..|.+|+||||.|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchH
Confidence            34466677777777777653  556666777777777777777777777777777777 666777777777777777777


Q ss_pred             HHHHHHhcCCCcccccccCCCcHHHHHH--HcCCHHHHHHHHhc
Q 009457          141 VVNTILDADVSCTRIVRKNGKTALHTAA--RYGLINIVTALIDR  182 (534)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~  182 (534)
                      +++.|++.|+.+....-.++.|+..-+-  +.|..++.++|...
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            7777777777655555566666665543  33667777777643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.21  E-value=9.1e-11  Score=108.03  Aligned_cols=122  Identities=23%  Similarity=0.187  Sum_probs=108.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      -..||..++..|+.+-+..|++--... +..|.+|+|||..|+..|+.++++.|++.|++.....+..+.||||.|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            356899999999999999999875444 7889999999999999999999999999999988888888999999999999


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                      +.++.+.|++.|+. ....+.-|+|+-.+|+--|+.+.|..+-.
T Consensus        91 n~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999988 58889999999999999999888876643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.16  E-value=2.3e-11  Score=87.67  Aligned_cols=55  Identities=35%  Similarity=0.493  Sum_probs=21.7

Q ss_pred             HhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHH
Q 009457          180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA  235 (534)
Q Consensus       180 l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A  235 (534)
                      ++.++..++.+|..|+||||+|+.+|+.+++++|++ .+.+++.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            444433345666666666666666666666666663 3555566666666666665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=1.8e-08  Score=100.81  Aligned_cols=120  Identities=20%  Similarity=0.210  Sum_probs=84.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCc
Q 009457           15 FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMN   94 (534)
Q Consensus        15 Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   94 (534)
                      +..|+..+++-.++..-..+.+             +-.++.+..|.||+|+..|+-|+|++++++++.+.+.+.+..|.|
T Consensus       870 il~av~~~D~~klqE~h~~gg~-------------ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get  936 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-------------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGET  936 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-------------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhH
Confidence            5566666666555555544433             334556667777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 009457           95 TFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA  148 (534)
Q Consensus        95 ~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  148 (534)
                      +||-|+-.++-.+.++|++.++.+ ...|..|.||-..|-..|+.++.-||-.+
T Consensus       937 ~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  937 ALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            777777777777777777777777 56677777777777777777777776543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.64  E-value=3.3e-08  Score=103.15  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      .+++|..|+|+||+|+..|..++++||+++|.++.-+-.+.|+||||.|+..|++|++..||.+|.+ ..+.|++|.+||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEEecccCCCHH
Confidence            5566666777777777666667777777776666434344667777777777777777777766666 556667777776


Q ss_pred             HHHHH
Q 009457          165 HTAAR  169 (534)
Q Consensus       165 h~A~~  169 (534)
                      ..-++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            66555

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.61  E-value=9.5e-08  Score=95.69  Aligned_cols=96  Identities=24%  Similarity=0.218  Sum_probs=88.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      ..+.+..+.||+|++.|+-++|+++|++++           .+++++.++.|+|+||.|+..++..+.++|++.+  ..+
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p-----------~elld~~de~get~lhkaa~~~~r~vc~~lvdag--asl  960 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGP-----------SELLDMADETGETALHKAACQRNRAVCQLLVDAG--ASL  960 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCC-----------HHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcc--hhh
Confidence            457788999999999999999999999998           6889999999999999999999999999999988  567


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSI  114 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~  114 (534)
                      ...|..|.||-.-|-+.|+.+.+.+|-.+
T Consensus       961 ~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  961 RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            78899999999999999999999998653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=4.6e-08  Score=102.11  Aligned_cols=93  Identities=24%  Similarity=0.274  Sum_probs=66.6

Q ss_pred             HHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC-CCCchHHHHHHhCCCHHHHHHhHhcCccccc
Q 009457          144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD-KKGQTALHMAVKGQCPSVVEYILSADHLILN  222 (534)
Q Consensus       144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in  222 (534)
                      ++-..+.+..+++|..|+|+||+++..+..+++++|+++|.++ ..+| ..|+||||-|...|+.+++..|++++ .-+.
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~  113 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLR  113 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcC-CceE
Confidence            3444455556777778888888888878788888888887774 5555 46778888888888888887777764 3447


Q ss_pred             cccCCCChHHHHHHHc
Q 009457          223 ERDKKGNTAVHIATRK  238 (534)
Q Consensus       223 ~~d~~g~T~Lh~A~~~  238 (534)
                      .+|++|..||..-++.
T Consensus       114 i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             EecccCCCHHHHHhhc
Confidence            7778888887776653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.50  E-value=1.1e-07  Score=93.62  Aligned_cols=94  Identities=23%  Similarity=0.279  Sum_probs=67.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      .+.++...+.+|++.|++..++.+.-.+.++ +..|.+.+|+||.||..|+.+++++|++.....++.+|..|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            3445666777777777777777777667776 666777777777777777777777777765555666777777777777


Q ss_pred             HHcCCHHHHHHHHhc
Q 009457          168 ARYGLINIVTALIDR  182 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~  182 (534)
                      ...+|.+++++|-+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            777777777777654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.41  E-value=2.7e-07  Score=90.92  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=85.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHH
Q 009457          122 CDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA  201 (534)
Q Consensus       122 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  201 (534)
                      .+.++..++.+|+..|++..++-+.-.+.+ .+.+|.+.+|+||.|+..|+.+++++|++.+...++.+|.+|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            355677899999999999999988888888 6789999999999999999999999999988777889999999999999


Q ss_pred             HhCCCHHHHHHhHhc
Q 009457          202 VKGQCPSVVEYILSA  216 (534)
Q Consensus       202 ~~~g~~~iv~~Ll~~  216 (534)
                      ...++.+++++|-+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            999999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.36  E-value=5e-07  Score=57.09  Aligned_cols=33  Identities=45%  Similarity=0.723  Sum_probs=26.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhccCCcccccccc
Q 009457          227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN  260 (534)
Q Consensus       227 ~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  260 (534)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            47888888888888888888888 4888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.35  E-value=4.9e-07  Score=55.52  Aligned_cols=29  Identities=41%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHhccCCcccc
Q 009457          227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVN  256 (534)
Q Consensus       227 ~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~  256 (534)
                      +|+||||+|+..|+.+++++|+++ |+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCC
Confidence            467777777777777777777774 66665

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.23  E-value=4.3e-06  Score=83.02  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=71.0

Q ss_pred             HHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHH
Q 009457           96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI  175 (534)
Q Consensus        96 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  175 (534)
                      ||..++.|+.+..-.|+..|++.+..--+.|.||||.|+..|+..-+++|+-.|++ +...|.+|.||+.+|-..||.++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHhcCchHH
Confidence            88888888888888888888888666667788888888888888888888888888 56788888888888888888887


Q ss_pred             HHHHHhc
Q 009457          176 VTALIDR  182 (534)
Q Consensus       176 v~~Ll~~  182 (534)
                      .+.|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            7766653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.22  E-value=1.5e-06  Score=53.34  Aligned_cols=27  Identities=44%  Similarity=0.653  Sum_probs=16.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCc
Q 009457          159 NGKTALHTAARYGLINIVTALIDRDPE  185 (534)
Q Consensus       159 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~  185 (534)
                      +|+||||+|++.|+.+++++|++++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            355666666666666666666665554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=2.4e-06  Score=85.93  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=71.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      .|||.++-..+.+-....+....           ...++..|..|.||||+|+..|+.+.++.|+..+  ++...+|..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~-----------~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~--Adv~~kN~~g   88 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKV-----------SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG--ADVSIKNNEG   88 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhh-----------hceeccccCCCCccHHHHHHhcCHHHHHHHHhcC--CCcccccccc
Confidence            45888888888887776655432           2336778888888888888888888888888877  5677788888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCc
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWP  116 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~  116 (534)
                      .+|||.|+..|+..++..++.+..
T Consensus        89 Ws~L~EAv~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   89 WSPLHEAVSTGNEQIITEVLRHLK  112 (560)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHhH
Confidence            888888888888888888887644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.20  E-value=5e-06  Score=82.56  Aligned_cols=94  Identities=21%  Similarity=0.268  Sum_probs=82.9

Q ss_pred             cCCCCCCc------HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCC
Q 009457          121 SCDSSNTS------PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG  194 (534)
Q Consensus       121 ~~d~~g~t------pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  194 (534)
                      .+|.+|.|      -||-.++.|+.+..--||..|++....-...|.||||.|++.|+..-+++|+-+|++ +...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCC
Confidence            44666655      599999999999999999999996655667799999999999999999999999999 58999999


Q ss_pred             chHHHHHHhCCCHHHHHHhHh
Q 009457          195 QTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       195 ~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                      .||+.+|-..|+-++.+.|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999888887765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.17  E-value=3.5e-06  Score=85.12  Aligned_cols=90  Identities=27%  Similarity=0.301  Sum_probs=75.1

Q ss_pred             HHHHHhCCCHHHHHHhHhcCcc---ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccC
Q 009457          198 LHMAVKGQCPSVVEYILSADHL---ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQY  274 (534)
Q Consensus       198 Lh~A~~~g~~~iv~~Ll~~~~~---~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~  274 (534)
                      |.-|+...++..+..|+.++..   +-...+.+|.|+||+|++.|+..+.++|+.+ |+|+.++|.+|+|+|.||..  .
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~--a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQ--A  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhh--c
Confidence            5567777778888888876421   2234466789999999999999999999985 99999999999999999998  7


Q ss_pred             CCCHHHHHHHHHHcCCcc
Q 009457          275 GDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       275 ~~~~~~i~~~L~~~ga~~  292 (534)
                      +..  ++++.|+++|+..
T Consensus       705 ~sq--ec~d~llq~gcp~  720 (749)
T KOG0705|consen  705 GSQ--ECIDVLLQYGCPD  720 (749)
T ss_pred             ccH--HHHHHHHHcCCCc
Confidence            777  9999999999865

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.16  E-value=7.5e-06  Score=87.07  Aligned_cols=126  Identities=15%  Similarity=0.213  Sum_probs=101.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS   89 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   89 (534)
                      .+.-....|+..||...|+..++.... .        .-.++..|.-|.++|++|+.+.+.|++++|+++.  .  .   
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~-~--------~lninc~d~lGr~al~iai~nenle~~eLLl~~~--~--~---   87 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV-S--------KLNINCRDPLGRLALHIAIDNENLELQELLLDTS--S--E---   87 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc-c--------ccchhccChHhhhceecccccccHHHHHHHhcCc--c--c---
Confidence            345567789999999999999998764 1        3447888999999999999999999999999974  1  1   


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCcccc---------ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELC---------KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT  153 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~---------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~  153 (534)
                       . ..+|-+|+..|..+.|+.++.+.....         ...-..+.|||.+||..++.|+++.|+++|..+.
T Consensus        88 -~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   88 -E-GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             -c-chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence             1 468999999999999999998643321         1112346899999999999999999999987753

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.13  E-value=4.7e-06  Score=83.84  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=71.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH  138 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~  138 (534)
                      -|||.++.....+-...++.......+...|..|+||||+|+..|+.+.++.|+..+++. ...|..|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            458988887766655554433233456677888999999999999999999999999988 6789999999999999999


Q ss_pred             HHHHHHHHhcC
Q 009457          139 LDVVNTILDAD  149 (534)
Q Consensus       139 ~~~v~~Ll~~~  149 (534)
                      .+++..++.+-
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            88888877653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.10  E-value=1e-05  Score=86.09  Aligned_cols=127  Identities=19%  Similarity=0.176  Sum_probs=103.0

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCh--hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDV--EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPL  130 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL  130 (534)
                      .+..++--...|++.|+.-.|+..++....  -+.+..|.-|+++||.|+.+.+.++.++|+++.-..        ..+|
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdAL   92 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDAL   92 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHH
Confidence            345566678899999999999999987644  345678889999999999999999999999865433        4589


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcc---------cccccCCCcHHHHHHHcCCHHHHHHHHhcCCccc
Q 009457          131 YSAAVQDHLDVVNTILDADVSCT---------RIVRKNGKTALHTAARYGLINIVTALIDRDPEIV  187 (534)
Q Consensus       131 h~Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  187 (534)
                      .+|+..|..++|+.++.+.....         ...-.-+-|||.+||..++.||++.|++++..++
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            99999999999999998654321         1112346799999999999999999999988763

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.09  E-value=4.6e-06  Score=52.63  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=11.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCc
Q 009457          160 GKTALHTAARYGLINIVTALIDRDPE  185 (534)
Q Consensus       160 g~tpLh~A~~~g~~~iv~~Ll~~~~~  185 (534)
                      |.||||+|+..|+.+++++|++.+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            44444444444444444444444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.08  E-value=1e-05  Score=81.93  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=47.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCChhhhh--ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC
Q 009457           61 LYISAANNFQDIFSCLLKFCDVEIVK--IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH  138 (534)
Q Consensus        61 L~~Aa~~g~~~iv~~Ll~~~~~~~~~--~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~  138 (534)
                      |.-|+.......+-.||.++..+.++  ..+.+|+|+||+|++.|++.+.++|+=++.+. ..+|..|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            34445555555555555554332221  22344556666666666666666665555554 4555566666666666666


Q ss_pred             HHHHHHHHhcCC
Q 009457          139 LDVVNTILDADV  150 (534)
Q Consensus       139 ~~~v~~Ll~~~~  150 (534)
                      -+++..|+..|.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            666666665553

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.82  E-value=1.7e-05  Score=86.28  Aligned_cols=125  Identities=19%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhh-CccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      +..|.+.+|+++..++.-.++.+++. +... ...|.+|.-.+|+ |..++.+...+++.......+++|.+|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            34445555555555555555555443 2111 2223333334444 2333344444444333333444555555555555


Q ss_pred             HHcCCHHHHHHHHhcCCccc-----eecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457          168 ARYGLINIVTALIDRDPEIV-----TIKDKKGQTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                      +.+|+..++..|++.+++..     ...+..|.|+--+|..+|+..+--+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            55555555555544332211     1112234455555555555554444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.78  E-value=3.4e-05  Score=84.47  Aligned_cols=143  Identities=20%  Similarity=0.200  Sum_probs=99.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457           55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA  134 (534)
Q Consensus        55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa  134 (534)
                      ..|.+.+|.++.    +..+.++.-.  ......+..+.+++..|...-+...+.+..         .-..|.|+||.|+
T Consensus       600 ~~~~~~~h~e~~----~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---------~~~~~~s~lh~a~  664 (785)
T KOG0521|consen  600 ADGSTTLHYEIL----ECLKLLLFIK--ELLVKASSDGECLPRIATALAHGCCENWPV---------VLCIGCSLLHVAV  664 (785)
T ss_pred             cccccccchhhh----hccccccchH--HHHHHhccCccchhhhhhhhcchhhhccch---------hhhcccchhhhhh
Confidence            356677777763    1111111111  222233456777777776655544443322         1246788999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      ..|..-+++.|++.+++ .+..|..|++|+|.+...|+...+..|++++++ .+..+.+|.+||++|.+..+.+++-++.
T Consensus       665 ~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  665 GTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             ccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHhhhccccHHHHHh
Confidence            99999999999998888 788899999999999999999999999988888 5888889999999988776665554443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.78  E-value=3.2e-05  Score=84.14  Aligned_cols=129  Identities=17%  Similarity=0.101  Sum_probs=82.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHH
Q 009457          120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH  199 (534)
Q Consensus       120 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  199 (534)
                      ......|+|-+|+++..++.-+++.+++.........|.+|...+|. |..++++..-+++......++.+|..|+||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            33455677777777777777777777775222244566666667777 44555666665555544445777777777777


Q ss_pred             HHHhCCCHHHHHHhHhcCcc-----ccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457          200 MAVKGQCPSVVEYILSADHL-----ILNERDKKGNTAVHIATRKCRPQIVSLLLS  249 (534)
Q Consensus       200 ~A~~~g~~~iv~~Ll~~~~~-----~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~  249 (534)
                      +|+.+|+..++..|++.+..     ++....-.|.|+-.+|-.+|+..+..+|-+
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            77777777777777753221     233344557777777777777766666554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.66  E-value=5.3e-05  Score=82.94  Aligned_cols=143  Identities=26%  Similarity=0.195  Sum_probs=103.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      .+|.+.+|.++.    +..+.++.-.+.. ......+.+++-.+...-+...+.+..         .-..|.|+||.|+.
T Consensus       600 ~~~~~~~h~e~~----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~---------~~~~~~s~lh~a~~  665 (785)
T KOG0521|consen  600 ADGSTTLHYEIL----ECLKLLLFIKELL-VKASSDGECLPRIATALAHGCCENWPV---------VLCIGCSLLHVAVG  665 (785)
T ss_pred             cccccccchhhh----hccccccchHHHH-HHhccCccchhhhhhhhcchhhhccch---------hhhcccchhhhhhc
Confidence            456777887763    1111111111111 222345666666666554444443321         22467899999999


Q ss_pred             cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHh
Q 009457          170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL  248 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll  248 (534)
                      .|..-+++.|++.+++ ++..|..|++|+|.+...|+...+..+++. +...+..|.+|.+||++|....+.+++-++.
T Consensus       666 ~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  666 TGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhhhccccHHHHHh
Confidence            9999999999999999 699999999999999999999999999995 6677999999999999998776666654443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.62  E-value=7.5e-05  Score=72.12  Aligned_cols=55  Identities=27%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457           96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS  151 (534)
Q Consensus        96 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  151 (534)
                      |+.|++.|+.+.++.|++.|.++ +..|....+||.+|+..||.+++++||++|+-
T Consensus        40 lceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            45555555555555555555444 44455555555555555555555555555543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.48  E-value=0.00022  Score=68.92  Aligned_cols=74  Identities=18%  Similarity=0.068  Sum_probs=60.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      --|..||+.|..+.|++|++.|  .++|..|....+||.+|+.+||.+++++|+++|+-. ..-..+|..+++ ++.+
T Consensus        38 ~elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Y-gaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHY-GALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhh-hhhh
Confidence            3589999999999999999976  667889999999999999999999999999999865 222335555544 4443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.43  E-value=0.00034  Score=61.47  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=32.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q 009457          120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR  182 (534)
Q Consensus       120 ~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  182 (534)
                      +.+|..|+|||+.|+..|..+.+.+|+.++.......|..|.+++.+|-+.|+.+++..|.+.
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            344555555555555555555555555555333444555555555555555555555555444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.29  E-value=0.00048  Score=60.59  Aligned_cols=64  Identities=14%  Similarity=0.107  Sum_probs=36.8

Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA  148 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  148 (534)
                      ++.+|..|.||++.|+..|+.+.+.+|+.++...+..+|..|.+.+.+|-..|+.+++..|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4445555566666666666666666666655444455555666666666556665555555554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.94  E-value=0.032  Score=56.43  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             CHHHHHHhHhcCcc-----ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          206 CPSVVEYILSADHL-----ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       206 ~~~iv~~Ll~~~~~-----~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ....+++|.++.-.     .+...|..--|+||+|+..|..+++.+||+. |+|+.++|..|.||.+++..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCccccccc
Confidence            35566677664322     1223445567999999999999999999995 79999999999999998863

>smart00248 ANK ankyrin repeats

Probab=95.49  E-value=0.021  Score=33.29  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=9.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhh
Q 009457           93 MNTFHVAAKKGHLGIAKELVSI  114 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~  114 (534)
                      .||+|+|+..++.++++.|++.
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc
Confidence            3444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.33  E-value=0.028  Score=32.72  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCC
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTK   36 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~   36 (534)
                      +|+||||.|+..|+.++++.+++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.49  E-value=0.057  Score=54.68  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHH
Q 009457          160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV  202 (534)
Q Consensus       160 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  202 (534)
                      -.|+||+|+.+|..++|.+||+.++| +...|..|+||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            34555555555555555555555544 3455555555555544

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.28  E-value=0.82  Score=40.67  Aligned_cols=49  Identities=16%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV  112 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll  112 (534)
                      ..|.-|+..+...+++..-+...     -.-...++.+-.||+..+.|+|+|+-
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~-----~~~~~~q~LFElAC~~qkydiV~WI~   96 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLE-----NERYLNQELFELACEEQKYDIVKWIG   96 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhh-----cchhHHHHHHHHHHHHccccHHHHHh
Confidence            45555666666666665543320     00123455566666666666666663

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.17  E-value=1.3  Score=39.41  Aligned_cols=137  Identities=19%  Similarity=0.188  Sum_probs=80.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      -.|..|++.+-+.++++.-+....                .-...++..-.||+..+.|+|+|+-+.     +..  .+-
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~----------------~~~~~q~LFElAC~~qkydiV~WI~qn-----L~i--~~~  104 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN----------------ERYLNQELFELACEEQKYDIVKWIGQN-----LHI--YNP  104 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc----------------chhHHHHHHHHHHHHccccHHHHHhhc-----cCC--CCc
Confidence            457788999999998887665321                123457788999999999999999443     122  234


Q ss_pred             CcHHHHHHHcCCHHHHHH----HHhhCccccccCCCC--CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHH
Q 009457           93 MNTFHVAAKKGHLGIAKE----LVSIWPELCKSCDSS--NTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHT  166 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~----Ll~~~~~l~~~~d~~--g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  166 (534)
                      .+.+-.|...++.++...    +.++.-.- ...|..  -..-|..|+..|-.+.+...++.|.+..       .+.|..
T Consensus       105 ~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~  176 (192)
T PF03158_consen  105 EDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQ  176 (192)
T ss_pred             hhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHH
Confidence            467788888888776221    11110000 000000  0122456666666666666666655521       156666


Q ss_pred             HHHcCCHHHHHHHH
Q 009457          167 AARYGLINIVTALI  180 (534)
Q Consensus       167 A~~~g~~~iv~~Ll  180 (534)
                      |+...+..++.+++
T Consensus       177 Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  177 AVKYNHRKILDYFI  190 (192)
T ss_pred             HHHhhHHHHHHHhh
Confidence            66666666666554

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.65  E-value=0.63  Score=42.66  Aligned_cols=116  Identities=21%  Similarity=0.287  Sum_probs=77.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCcccccccc----CCCChHHHHHHH-
Q 009457          163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERD----KKGNTAVHIATR-  237 (534)
Q Consensus       163 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d----~~g~T~Lh~A~~-  237 (534)
                      .|--|+...+.+-+..++....+        -.++|-+|..++..+++-+|+.....  ..+|    ..+.--+.++.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHhh
Confidence            45557777777776666643322        24677788888888888888864211  1111    112223334332 


Q ss_pred             -cCCHHHHHHHhccCCcccccc---ccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          238 -KCRPQIVSLLLSYTSIDVNAI---NNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       238 -~~~~~iv~~Ll~~~g~~~~~~---n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                       ..+..+.+.+++.+-+++|..   -+.|.|.|+-|.+  +++.  +++.+|++.||-.
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K--y~~~--emi~~Llk~GA~~  280 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMK--YKNS--EMIAFLLKYGAIS  280 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHh--cCcH--HHHHHHHHcCccc
Confidence             346788899998766777754   5789999999999  8888  9999999999954

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.87  E-value=1.2  Score=40.83  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=26.0

Q ss_pred             HHHHHHHHhcCCCccc---ccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          139 LDVVNTILDADVSCTR---IVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       139 ~~~v~~Ll~~~~~~~~---~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      ..++++++++|--.++   .+-+.|.|-|.-|.+.++.+++..|+++|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            4555555555432221   223456666666666666666666666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.76  E-value=1.3  Score=33.70  Aligned_cols=49  Identities=12%  Similarity=0.188  Sum_probs=41.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 009457           12 HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFC   80 (534)
Q Consensus        12 ~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~   80 (534)
                      ...|..|+..|+.|+++.+++....                    ....|..|+...+.+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--------------------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--------------------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--------------------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            5678999999999999999975421                    145799999999999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=86.36  E-value=21  Score=35.40  Aligned_cols=254  Identities=10%  Similarity=0.017  Sum_probs=152.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh-
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI-   84 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~-   84 (534)
                      ..|.+|...|..+.+.|+.+....+++.-..          ...--..|..|...+....+.+..+-...+++.-.... 
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~----------~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~   85 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILP----------HVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVV   85 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHH----------hHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999887422          11223456778888888888887775555554421111 


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhC-ccc-cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CcccccccCC
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIW-PEL-CKSCDSSNTSPLYSAAVQDHLDVVNTILDADV--SCTRIVRKNG  160 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~-~~l-~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~--~~~~~~d~~g  160 (534)
                      .-..+..|.-.+..+...+..+....+++.- +.. .-..|..|...+..+...+..+..+.+++.-.  -..-..+..|
T Consensus        86 ~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G  165 (322)
T cd07920          86 RLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYG  165 (322)
T ss_pred             HHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccc
Confidence            2245677877777777777655444444431 111 12457788888887777766555555443210  1111345667


Q ss_pred             CcHHHHHHHcCCHH----HHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC--ccccccccCCCChHHHH
Q 009457          161 KTALHTAARYGLIN----IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD--HLILNERDKKGNTAVHI  234 (534)
Q Consensus       161 ~tpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~in~~d~~g~T~Lh~  234 (534)
                      ...+.........+    +++.|......  -..|..|...+..+.+.+..+..+.+++.-  ...--..+..|...+..
T Consensus       166 ~~vvq~~l~~~~~~~~~~l~~~l~~~~~~--L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~  243 (322)
T cd07920         166 CRVIQRCLEHCSEEQREPLLEEILEHALE--LVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEK  243 (322)
T ss_pred             cHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            77777666665544    34444433322  235778888888888887766444444421  11112457788888887


Q ss_pred             HHHcCC----HHHHHHHhccC----CccccccccCCCCHHHHHHH
Q 009457          235 ATRKCR----PQIVSLLLSYT----SIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       235 A~~~~~----~~iv~~Ll~~~----g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +...+.    ..+++.++...    ...-=..|..|+-.+.-+..
T Consensus       244 ~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~  288 (322)
T cd07920         244 CLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALD  288 (322)
T ss_pred             HHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHH
Confidence            777664    34555555421    11223567788888777766

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.78  E-value=1.6  Score=33.24  Aligned_cols=47  Identities=21%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhh
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSI  114 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~  114 (534)
                      .-+..|+..|+.|+++.+++....         ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~---------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP---------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc---------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            456777777888777777754311         13467777777777777777775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=82.60  E-value=32  Score=34.06  Aligned_cols=234  Identities=10%  Similarity=0.006  Sum_probs=137.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCh-hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC-ccc-cccCCCCCCcH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDV-EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW-PEL-CKSCDSSNTSP  129 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~-~~l-~~~~d~~g~tp  129 (534)
                      .|..|.-.|..+.+.+..+....+++.-.+ ...-..|..|.-.+......+..+-...+++.- +++ .-..|..|.-.
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            445666777777777777666666654111 222346778888888888888776555554432 121 12467888888


Q ss_pred             HHHHHHcCCHHHHHHHHhc--CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc----CCccceecCCCCchHHHHHHh
Q 009457          130 LYSAAVQDHLDVVNTILDA--DVSCTRIVRKNGKTALHTAARYGLINIVTALIDR----DPEIVTIKDKKGQTALHMAVK  203 (534)
Q Consensus       130 Lh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~----~~~~~~~~d~~g~t~Lh~A~~  203 (534)
                      +..+...+..+....+++.  +.-..-..|..|...+..+...+..+..+.+++.    ...  -..+..|...+.-..+
T Consensus        97 lqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~--l~~~~~G~~vvq~~l~  174 (322)
T cd07920          97 IQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVA--LSTHPYGCRVIQRCLE  174 (322)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HHcCccccHHHHHHHH
Confidence            8888887775544444432  1112234678888888888887776665555432    222  2346788888888777


Q ss_pred             CCCHHHHHHhHhcC--ccccccccCCCChHHHHHHHcCCHHHHHHHhccC--CccccccccCCCCHHHHHHHccCCCCHH
Q 009457          204 GQCPSVVEYILSAD--HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT--SIDVNAINNQRETAMDLADKLQYGDSTL  279 (534)
Q Consensus       204 ~g~~~iv~~Ll~~~--~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~t~L~lA~~~~~~~~~~  279 (534)
                      ....+..+.+++.-  ...--..|..|+..+..+...+..+..+.+++.-  ....-..+..|...+..+..........
T Consensus       175 ~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~  254 (322)
T cd07920         175 HCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERE  254 (322)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHH
Confidence            66555444443310  1111245789999999999888766444444321  1112356778877777766622211122


Q ss_pred             HHHHHHHHc
Q 009457          280 EIKEALAEA  288 (534)
Q Consensus       280 ~i~~~L~~~  288 (534)
                      .+++.+...
T Consensus       255 ~ii~~l~~~  263 (322)
T cd07920         255 LIIDEILAS  263 (322)
T ss_pred             HHHHHHhcC
Confidence            455555443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-13
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		4e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		5e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		8e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		8e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		4e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 128 SPLYSAAVQDHLDVVNTILDA--DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
           +PL+ AA   HL+VV  +L+A  DV+      KNG+T LH AAR G + +V  L++   +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS 245
            V  KDK G+T LH+A +     VV+ +L A   + N +DK G T +H+A R    ++V 
Sbjct: 61  -VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118
Query: 246 LLL 248
           LLL
Sbjct: 119 LLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
           NG+T LH AAR G + +V  L++   + V  KDK G+T LH+A +     VV+ +L A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 219 LILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDST 278
            + N +DK G T +H+A R    ++V LLL     DVNA +    T + LA +    +  
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAAR----NGH 113
Query: 279 LEIKEALAEAGA 290
           LE+ + L EAGA
Sbjct: 114 LEVVKLLLEAGA 125

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 58  ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV--SIW 115
           ET L+++A     ++   LL+  +   V  +++ D    H AA+ GH  + K L+  +  
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
           P L  +   +   PL+ AA + H++ V  +L+ + S   + +K G T LH AA+YG + +
Sbjct: 106 PNLATTAGHT---PLHIAAREGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRV 161
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL---SADHLILNERDKKGNTAV 232
              L++RD        K G T LH+AV      +V+ +L    + H         G T +
Sbjct: 162 AELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH----SPAWNGYTPL 216
Query: 233 HIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           HIA ++ + ++   LL Y     NA + Q  T + LA
Sbjct: 217 HIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLA 252

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           K+G T LH AAR G + IV  L+    + V  KDK G T LH+A +     +VE +L A 
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
             + N +DK G T +H+A R+   +IV +LL     DVNA +   +T  DLA +  + D 
Sbjct: 92  ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIREGHED- 148
Query: 278 TLEIKEALAEAG 289
              I E L +A 
Sbjct: 149 ---IAEVLQKAA 157

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           K+G T LH AAR G + IV  L+    + V  KDK G T LH+A +     +VE +L A 
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
             + N +DK G T +H+A R+   +IV +LL     DVNA +   +T  DLA
Sbjct: 92  ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLA 141

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           K+G T LH AAR G + IV  L+    + V  KDK G T LH+A +     +VE +L A 
Sbjct: 45  KDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
             + N +DK G T +H+A R+   +IV +LL     DVNA +   +TA D++
Sbjct: 104 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDIS 153

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
           NG+T LH AAR G + +V  L++   + V  KDK G+T LH+A +     VV+ +L A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 219 LILNERDKKGNTAVHIATRKCRPQIVSLLL 248
            + N +DK G T +H+A R    ++V LLL
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
           G+T LH+A +     VV+ +L A   + N +DK G T +H+A R    ++V LLL     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           DVNA +    T + LA +    +  LE+ + L EAGA
Sbjct: 60  DVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGA 92

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 130 LYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR--DPE 185
           L  AA   + D V  +L+  ADV+ +     +GKT LH AA  G   +V  L+ +  DP 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASD---SDGKTPLHLAAENGHKEVVKLLLSQGADP- 63
Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQI 243
               KD  G+T LH+A +     VV+ +LS  AD    N +D  G T +H+A      ++
Sbjct: 64  --NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEV 118
Query: 244 VSLLLSYTSIDVNAINNQRETAMDLA 269
           V LLLS  + D N  ++   T +DLA
Sbjct: 119 VKLLLSQGA-DPNTSDSDGRTPLDLA 143

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 13/235 (5%)
Query: 86  KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTI 145
           K+  ++  +  H AA+ GH+ I   LV     +  +C     +PL  AA  +HL+ V  +
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 146 LDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQ 205
           + A  +        G T LH AA+ G   +V  L+      V  +D  G T +  A + +
Sbjct: 64  IKAG-ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 206 CPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
              +V+ +LS    I N RD + N  +H A       I  +LL+    D++A+N   ++ 
Sbjct: 123 HVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSP 180
Query: 266 MDLADKL-QYG--------DSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSD 311
           + +A +  +Y         DS + +K    E   + A    QV  A+++ + + D
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
           + D++ T+PL+ AA   HL++V  +L   ADV  + +    G T LH AA +G + IV  
Sbjct: 42  AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF---GYTPLHLAAYWGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
           L+    + V   D  G T LH+A K     +VE +L   AD   +N +DK G TA  I+
Sbjct: 99  LLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D S  +PL+ AA++ HL++V  +L   ADV+      K G T LH AA YG + IV  L+
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA---DKMGDTPLHLAALYGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
               + V   D  G T LH+A       +VE +L   AD   +N +DK G TA  I+
Sbjct: 101 KNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDIS 153

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
           +GKT LH AA  G + IV  L+    + V   DK G T LH+A       +VE +L   A
Sbjct: 46  SGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           D   +N  D  G T +H+A      +IV +LL Y + DVNA +   +TA D++
Sbjct: 105 D---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDIS 153

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 130 LYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIV 187
           L  AA   + D V  +++  ADV+ +     +G+T LH AA  G   +V  LI +  + V
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASD---SDGRTPLHHAAENGHKEVVKLLISKGAD-V 63
Query: 188 TIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVS 245
             KD  G+T LH A +     VV+ ++S  AD   +N +D  G T +H A      ++V 
Sbjct: 64  NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 246 LLLSYTSIDVNAINNQRETAMDLA 269
           LL+S    DVN  ++   T +DLA
Sbjct: 121 LLIS-KGADVNTSDSDGRTPLDLA 143

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
            H+AA  GHL I + L+    ++  S D +  +PL+ AA   HL++V  +L   ADV+  
Sbjct: 51  LHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNA- 108
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
                +G T LH AA+YG + IV  L+    + V  +DK G+TA  +++
Sbjct: 109 --YDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
           ADV+ T     +G T LH AA  G + IV  L+    + V   D  G T LH+A      
Sbjct: 38  ADVNATD---NDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
            +VE +L   AD   +N  D  G+T +H+A +    +IV +LL + + DVNA +   +TA
Sbjct: 94  EIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
            D++
Sbjct: 150 FDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
           G T LH AAR G + IV  L+    ++  + D  G T LH+A K     +VE +L   AD
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
              +N  D  G+T +H+A      +IV +LL Y + DVNA +   +TA D++
Sbjct: 106 ---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
           ADV+   +V   G T LH AA +G + IV  L+    + V   D  G T LH+A      
Sbjct: 38  ADVNAADVV---GWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
            +VE +L   AD   +N +D  G T +H+A  +   +IV +LL Y + DVNA +   +TA
Sbjct: 94  EIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
            D++
Sbjct: 150 FDIS 153

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 159 NGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS- 215
           +G+T LH AA  G   IV  L+ +  DP     KD  G+T LH A +     +V+ +LS 
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 216 -ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
            AD    N +D  G T +H A      +IV LLLS    D N  ++   T +DLA
Sbjct: 93  GADP---NAKDSDGRTPLHYAAENGHKEIVKLLLS-KGADPNTSDSDGRTPLDLA 143

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
           ADV+ T  +   G T LH AA+ G + IV  L+    + V   D  G T LH+A      
Sbjct: 38  ADVNATDWL---GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
            +VE +L   AD   +N +D +G T +H+A      +IV +LL Y + DVNA +   +TA
Sbjct: 94  EIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
            D++
Sbjct: 150 FDIS 153

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
           G T LH AA +G + IV  L+    + V  KD  G T LH+A +     +VE +L   AD
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
              +N  D  G T +H+A ++   +IV +LL     DVNA +   +TA D++
Sbjct: 106 ---VNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 89  SRSDMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD 147
           S SD  T  H AAK+GH  I K L+S   ++  + DS   +PL+ AA + H ++V  ++ 
Sbjct: 33  SDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 148 --ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMA 201
             ADV+       +G+T LH AA+ G   IV  LI +  ++ T  D  G+T L +A
Sbjct: 92  KGADVNAKD---SDGRTPLHYAAKEGHKEIVKLLISKGADVNT-SDSDGRTPLDLA 143

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNER 224
           AA  G  + V  LI+   + V   D  G+T LH A K     +V+ ++S  AD   +N +
Sbjct: 11  AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNAK 66
Query: 225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEA 284
           D  G T +H A ++   +IV LL+S    DVNA ++   T +  A K    +   EI + 
Sbjct: 67  DSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDSDGRTPLHYAAK----EGHKEIVKL 121
Query: 285 LAEAGA 290
           L   GA
Sbjct: 122 LISKGA 127

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
           K+G T LH AA+ G    V  L+ +  + V  + K G T LH+A K     +V+ +L+  
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA 257
           AD   +N R K GNT  H+A +    +IV  LL     DVNA
Sbjct: 66  AD---VNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
           + D+S  +PL+ AA   HL++V  +L   ADV+   I+   G T LH AA  G + IV  
Sbjct: 42  ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM---GSTPLHLAALIGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
           L+    ++  + D  G T LH+A       +VE +L   AD   +N +DK G TA  I+
Sbjct: 99  LLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
           ADV+ T     +G T LH AA YG + IV  L+    ++  I D  G T LH+A      
Sbjct: 38  ADVNATD---ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
            +VE +L   AD   +N  D  G+T +H+A      +IV +LL + + DVNA +   +TA
Sbjct: 94  EIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
            D++
Sbjct: 150 FDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
           + D+S  +PL+ AA   HL++V  +L   ADV+   I    G T LH AA  G + IV  
Sbjct: 42  ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX---GSTPLHLAALIGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
           L+    ++  + D  G T LH+A       +VE +L   AD   +N +DK G TA  I+
Sbjct: 99  LLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
           ADV+ T     +G T LH AA YG + IV  L+    ++  I D  G T LH+A      
Sbjct: 38  ADVNATD---ASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHL 93
Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
            +VE +L   AD   +N  D  G+T +H+A      +IV +LL + + DVNA +   +TA
Sbjct: 94  EIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTA 149
Query: 266 MDLA 269
            D++
Sbjct: 150 FDIS 153

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
           + + G T L+ +   + +DI   LL+     +  +R ++    F +AA  G + + K  +
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFLLAAIAGSVKLLKLFL 92
Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRI-------VRKNGKTA 163
           S   ++   CD    +    AAV   +  +  +    A+V+  R        +RK G TA
Sbjct: 93  SKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLIL-- 221
           L  AA  G + ++  L+D     V   D  G+ AL  A+     S VE I    HL+L  
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT---HLLLDH 208
Query: 222 ----NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
               N R ++G T + +A  K    +V  LL    I++N  ++  +TA+ LA +L+    
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-- 266
Query: 278 TLEIKEALAEAGA 290
             +I E L + GA
Sbjct: 267 --KIAELLCKRGA 277

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D+S  +PL+ AA   HL++V  +L   ADV+    V   G T L  AA +G + IV  L+
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNA---VDHAGMTPLRLAALFGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
               + V   D +G T LH+A       +VE +L   AD   +N +DK G TA  I+
Sbjct: 101 KNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDIS 153

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
           +G T LH AA  G + IV  L+    ++  + D  G T L +A       +VE +L   A
Sbjct: 46  SGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           D   +N  D +G+T +H+A      +IV +LL     DVNA +   +TA D++
Sbjct: 105 D---VNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNE 223
           LH AA+ G ++ +   +D    +  + DK G TAL+ A  G    +VE + +  ++ LN+
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLS 249
           ++K G+TA+H A  K    IV LLL+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTIL--DADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D    +PL+ AA   HL++V  +L   ADV+    V  NG T LH AA  G + IV  L+
Sbjct: 32  DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA---VDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
               + V  KD  G T L++A       +VE +L   AD   +N +DK G TA  I+
Sbjct: 89  KYGAD-VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 141

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
           + D++  +PL+ AAV  HL++V  +L   ADV    +    G T LH AA  G + IV  
Sbjct: 42  AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY---GFTPLHLAAMTGHLEIVEV 98
Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
           L+    ++    D  G T LH+A       +VE +L   AD   +N +DK G TA  I+
Sbjct: 99  LLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDIS 153

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
            H+AA  GHL I + L+    ++  + DS   +PL+ AA + HL+VV  +L   ADV+  
Sbjct: 51  LHLAAYFGHLEIVEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN 109
Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
                NG T LH AA  G + IV  L+    + V  +DK G+TA  +++
Sbjct: 110 ---DHNGFTPLHLAANIGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISI 154

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL--SAD 217
           GK  L  AAR G  + V  L+    + V   D  G T LH+ V      ++E +L  +AD
Sbjct: 15  GKKLLE-AARAGQDDEVRILMANGAD-VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
              +N  DK G T +H+A  +   +IV +LL Y + DVNA++ Q  T + LA +    D 
Sbjct: 73  ---VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-DVNAMDYQGYTPLHLAAE----DG 124
Query: 278 TLEIKEALAEAGA 290
            LEI E L + GA
Sbjct: 125 HLEIVEVLLKYGA 137

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
           + + G T L+ +   + +DI   LL+     +  +R ++    F +AA  G + + K  +
Sbjct: 55  EEEGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFILAAIAGSVKLLKLFL 112
Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRI-------VRKNGKTA 163
           S   ++   CD    +    AAV   +  +  +    A+V+  R        +RK G TA
Sbjct: 113 SKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171
Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLIL-- 221
           L  AA  G + ++  L+D     V   D  G+ AL  A+     S VE I    HL+L  
Sbjct: 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT---HLLLDH 228
Query: 222 ----NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
               N R ++G T + +A  K    +V  LL    I++N  ++  +TA+ LA +L+    
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK-- 286
Query: 278 TLEIKEALAEAGA 290
             +I E L + GA
Sbjct: 287 --KIAELLCKRGA 297

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G   +H AAR G ++ +  L++   + V I+D +G   LH+A K     VVE+++   
Sbjct: 68  RTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
              +  R+ KG+TA  +A    R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G   +H AAR G ++ +  L++   + V I+D +G   LH+A K     VVE+++   
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
              +  R+ KG+TA  +A    R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 49  LMAMQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
            +  QN+  +T L+++   N  +I   LL   CD E+   R  + +   H+A ++G L  
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL---HLACEQGCLAS 93
Query: 108 AKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA 167
              L        +SC    T+P        HL   ++IL A          NG T LH A
Sbjct: 94  VGVLT-------QSC----TTP--------HL---HSILKA-------TNYNGHTCLHLA 124
Query: 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
           + +G + IV  L+    ++   +   G+TALH+AV  Q P +V  +L
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRK-NGKTALHTAARYGLINIVTALIDR--DP 184
           +PL+ A + +  ++   +L A   C   +R   G T LH A   G +  V  L      P
Sbjct: 47  TPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 185 EIVTI---KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
            + +I    +  G T LH+A       +VE ++S    +  +    G TA+H+A     P
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE 287
            +VSLLL     DVN +  Q  +      +L +G  +  I++ L +
Sbjct: 165 DLVSLLLK-CGADVNRVTYQGYSPY----QLTWGRPSTRIQQQLGQ 205

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 50  MAMQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIA 108
           +  QN+  +T L+++   N  +I   LL   CD E+   R  + +   H+A ++G L   
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL---HLACEQGCLASV 91
Query: 109 KELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168
             L        +SC    T+P        HL   ++IL A          NG T LH A+
Sbjct: 92  GVLT-------QSC----TTP--------HL---HSILKA-------TNYNGHTCLHLAS 122
Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
            +G + IV  L+    ++   +   G+TALH+AV  Q P +V  +L
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRK-NGKTALHTAARYGLINIVTALIDR--DP 184
           +PL+ A + +  ++   +L A   C   +R   G T LH A   G +  V  L      P
Sbjct: 44  TPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 185 EIVTI---KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP 241
            + +I    +  G T LH+A       +VE ++S    +  +    G TA+H+A     P
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 161
Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE 287
            +VSLLL     DVN +  Q  +      +L +G  +  I++ L +
Sbjct: 162 DLVSLLLK-CGADVNRVTYQGYSPY----QLTWGRPSTRIQQQLGQ 202

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G   +H AAR G ++ +  L++   + V I+D +G   LH+A K     VVE+++   
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
              +  R+ KG+TA  +A    R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G   +H AAR G ++ +  L++   + V I+D +G   LH+A K     VVE+++   
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
              +  R+ KG+TA  +A    R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G   +H AAR G ++ +  L++   + V I+D +G   LH+A K     VVE+++   
Sbjct: 68  RTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLL 247
              +  R+ KG+TA  +A    R ++VSL+
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
           GK  L  AAR G  + V  L+    + V   D +G T LH+A     P +VE +L   AD
Sbjct: 15  GKKLLE-AARAGQDDEVRILMANGAD-VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
              +N RD  G T +H+A      +IV +LL Y + DVNA +    T + LA    +   
Sbjct: 73  ---VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA-DVNAQDAYGLTPLHLAADRGH--- 125
Query: 278 TLEIKEALAEAGA 290
            LEI E L + GA
Sbjct: 126 -LEIVEVLLKHGA 137

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 51  AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
           A   D G+  L  +AA    ++   +    DV        + +   H+AA  G L I + 
Sbjct: 1   AFGQDLGKKLLEAAAAGQDDEVRILMANGADVNAT---DDNGLTPLHLAAANGQLEIVEV 57
Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAA 168
           L+    ++  S DS+  +PL+ AA   HL++V  +L   ADV+      + G T LH AA
Sbjct: 58  LLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNA---YDRAGWTPLHLAA 113
Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV-KGQ 205
             G + IV  L+    + V  +D  G TA  +++ +GQ
Sbjct: 114 LSGQLEIVEVLLKHGAD-VNAQDALGLTAFDISINQGQ 150

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
           P +  SC         S   +D   V++  +    S      + G+TALH AARY   + 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
              L++   +   I+D  G+T LH AV      V + ++      L+ R   G T + +A
Sbjct: 73  AKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
            R     ++  L++ +  DVNA+++  ++A+
Sbjct: 132 ARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D    +PL+ AA+ DHL++V  +L   ADV+    +   G+T LH  A YG + IV  L+
Sbjct: 44  DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI---GETPLHLVAMYGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
               + V  +DK G+TA  +++
Sbjct: 101 KHGAD-VNAQDKFGKTAFDISI 121

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
           P +  SC         S   +D   V++  +    S      + G+TALH AARY   + 
Sbjct: 14  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 73
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
              L++   +   I+D  G+T LH AV      V + ++      L+ R   G T + +A
Sbjct: 74  AKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
            R     ++  L++ +  DVNA+++  ++A+
Sbjct: 133 ARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVR-KNGKTALHTAARYGLINIVTAL 179
           + D   TSPL+ AA   H      +L A VS  R  R K  +T LH AA  G  NIV  L
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKC 239
           +    + V  KD    TALH A +     VVE ++            K    VH  ++ C
Sbjct: 87  LKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLI------------KYGADVHTQSKFC 133
Query: 240 RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQ 273
           +          T+ D+ +I+N  E   DLA+ LQ
Sbjct: 134 K----------TAFDI-SIDNGNE---DLAEILQ 153

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G+TALH AARY   +    L++   +   I+D  G+T LH AV      V + +L   
Sbjct: 20  RTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
              L+ R   G T + +A R     ++  L++ +  DVNA+++  ++A+
Sbjct: 79  ATDLDARMHDGTTPLILAARLALEGMLEDLIN-SHADVNAVDDLGKSAL 126

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-DHLIL 221
            LH A        V  L+   P ++  KD+ G+  LH +V  Q   +  ++LS  +++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 222 NE-RDKKGNTAVHIATRKCRPQIV-SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
           ++  D  G T  HIA      ++V SL       D+N I NQ  T + LA     G    
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 120
Query: 280 EIKEALAEAGA 290
           E+ + L E GA
Sbjct: 121 EVSQFLIENGA 131

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 127 TSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTA--LHTAARYGLINIVTALIDRDP 184
           +SPL+ AA+    D++  +L    +      +N   A  LH A + G   +V  L+D + 
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANAGA---RNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 185 EIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV 244
           +    KD  G T L  A  G    +V  +L     I N  + KGNTA+H A  +    +V
Sbjct: 144 K-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVV 201
Query: 245 SLLLSYTSIDVNAINNQRETAMDLADK 271
            LLL + +  V  +N ++ TA+D A++
Sbjct: 202 ELLLLHGA-SVQVLNKRQRTAVDCAEQ 227

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-DHLIL 221
            LH A        V  L+   P ++  KD+ G+  LH +V  Q   +  ++LS  +++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 222 NE-RDKKGNTAVHIATRKCRPQIV-SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
           ++  D  G T  HIA      ++V SL       D+N I NQ  T + LA     G    
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 120
Query: 280 EIKEALAEAGA 290
           E+ + L E GA
Sbjct: 121 EVSQFLIENGA 131

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA-DHLIL 221
            LH A        V  L+   P ++  KD+ G+  LH +V  Q   +  ++LS  +++ L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 222 NE-RDKKGNTAVHIATRKCRPQIV-SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
           ++  D  G T  HIA      ++V SL       D+N I NQ  T + LA     G    
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----VGKKWF 120
Query: 280 EIKEALAEAGA 290
           E+ + L E GA
Sbjct: 121 EVSQFLIENGA 131

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D +  +PL+ AA + HL++V  +L   ADV+ + I    G+T LH AA  G + IV  L+
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
           +   + V  +DK G+TA  +++
Sbjct: 101 EYGAD-VNAQDKFGKTAFDISI 121

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D    +PL+ AA  DHL++V  +L   ADV+       +G T LH AA +G + IV  L+
Sbjct: 44  DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH---DNDGSTPLHLAALFGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
               + V  +DK G+TA  +++
Sbjct: 101 KHGAD-VNAQDKFGKTAFDISI 121

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 194 GQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSI 253
           G+  L  A  GQ   V   IL A+   +N  D+KGNT +H+A      +IV +LL + + 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA- 71
Query: 254 DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           DVNA +N   T + LA    +    LEI E L + GA
Sbjct: 72  DVNAHDNDGSTPLHLAALFGH----LEIVEVLLKHGA 104

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D +  +PL+ AA + HL++V  +L   ADV+   I    G+T LH AA  G + IV  L+
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW---GRTPLHLAATVGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
           +   + V  +DK G+TA  +++
Sbjct: 101 EYGAD-VNAQDKFGKTAFDISI 121

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G+TALH AARY   +    L++   +   I+D  G+T LH AV      V + ++   
Sbjct: 23  RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
              L+ R   G T + +A R     ++  L++ +  DVNA+++  ++A+
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 129

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           D +  +PL+ AA + HL++V  +L   ADV+ +      G+T LH AA  G + IV  L+
Sbjct: 44  DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS---DSWGRTPLHLAATVGHLEIVEVLL 100
Query: 181 DRDPEIVTIKDKKGQTALHMAV 202
           +   + V  +DK G+TA  +++
Sbjct: 101 EYGAD-VNAQDKFGKTAFDISI 121

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 40/188 (21%)
Query: 120 KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
           +  D  N + L+ AA+ + +D+V   +       ++      T LH A R G +++V  L
Sbjct: 36  RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95
Query: 180 IDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI----------------- 220
           +    DP ++   D +G + +H+A +    S+V Y+++    +                 
Sbjct: 96  MKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152
Query: 221 ----------------LNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRE 263
                           +N  DK   NTA+H A       ++SLLL     +V+A N + E
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGE 211
Query: 264 TAMDLADK 271
           +A+DLA +
Sbjct: 212 SALDLAKQ 219

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTR---IVRKNGKTALHTAARYGLINIVTAL 179
           D    +PL+ A VQ +L  V+ +++      R   I     +T LH A    L ++V  L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL---SADHLILNERDKKGNTAVHIAT 236
           +      + + D+ GQTA H+A + + P+ +  +L   +   L L  R+  G TA+H+A 
Sbjct: 66  VTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 237 RKCRPQIVSLLLSYTSIDVNAIN 259
                + V LLL   + D++A++
Sbjct: 125 NTECQETVQLLLERGA-DIDAVD 146

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
           P +  SC         S   +D   V++  +    S      + G TALH AA Y   + 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDA 72
Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
              L++   +   I+D  G+T LH AV      V + ++      L+ R   G T + +A
Sbjct: 73  AKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
            R     ++  L++ +  DVNA+++  ++A+
Sbjct: 132 ARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-35
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-37
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-33
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-25
2rfa_A	232	Transient receptor potential cation channel subfa	2e-30
2rfa_A	232	Transient receptor potential cation channel subfa	2e-26
2rfa_A	232	Transient receptor potential cation channel subfa	9e-22
2rfa_A	232	Transient receptor potential cation channel subfa	5e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-29
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-17
2etb_A	256	Transient receptor potential cation channel subfam	1e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-26
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	5e-12
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  147 bits (374), Expect = 2e-39
 Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 29/250 (11%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
               G T L+++  +N  DI   LL            + +     H+AAK+  + +A+ L
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS---PAWNGYTPLHIAAKQNQVEVARSL 231

Query: 112 VS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH 165
           +            +      +PL+ AA + H ++V  +L   A+ +      K+G T LH
Sbjct: 232 LQYGGSA-----NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN---KSGLTPLH 283

Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNE 223
             A+ G + +   LI     +     + G T LH+A       +V+++L   AD   +N 
Sbjct: 284 LVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNA 339

Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKE 283
           + K G + +H A ++    IV+LLL       N +++   T + +A +L Y    + + +
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGY----ISVTD 394

Query: 284 ALAEAGAKHA 293
            L     + +
Sbjct: 395 VLKVVTDETS 404

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (372), Expect = 5e-39
 Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 29/247 (11%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            N   ET L+++A     ++   LL+    V     +++ D    H AA+ GH  + K L
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLL 99

Query: 112 VS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH 165
           +               ++  +PL+ AA + H++ V  +L+  A  +C     K G T LH
Sbjct: 100 LENNANP-----NLATTAGHTPLHIAAREGHVETVLALLEKEASQACM---TKKGFTPLH 151

Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNE 223
            AA+YG + +   L++RD        K G T LH+AV      +V+ +L         + 
Sbjct: 152 VAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHS 207

Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKE 283
               G T +HIA ++ + ++   LL Y     NA + Q  T + LA   Q G    E+  
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLA--AQEGH--AEMVA 262

Query: 284 ALAEAGA 290
            L    A
Sbjct: 263 LLLSKQA 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  143 bits (362), Expect = 1e-37
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 21/243 (8%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
           +    +T L+ +A     ++   LL+   +  +    + +     H+AA++GH+     L
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETVLAL 132

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAAR 169
           +               +PL+ AA    + V   +L+  A  +      KNG T LH A  
Sbjct: 133 LEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG---KNGLTPLHVAVH 188

Query: 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKK 227
           +  ++IV  L+ R           G T LH+A K     V   +L         N    +
Sbjct: 189 HNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQ 244

Query: 228 GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE 287
           G T +H+A ++   ++V+LLLS    + N  N    T + L    Q G   + + + L +
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLV--AQEGH--VPVADVLIK 299

Query: 288 AGA 290
            G 
Sbjct: 300 HGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  135 bits (342), Expect = 7e-35
 Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 29/247 (11%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
             ++G T L++++      I   LL+         + +       H+AA+ GH  +AK L
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKYL 66

Query: 112 VS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH 165
           +     +      +    + +PL+ AA   H ++V  +L+  A+ +   +    G T LH
Sbjct: 67  LQNKAKV-----NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN---LATTAGHTPLH 118

Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNE 223
            AAR G +  V AL++++        KKG T LH+A K     V E +L   A     N 
Sbjct: 119 IAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNA 174

Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKE 283
             K G T +H+A       IV LLL       ++      T + +A   +     +E+  
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIA--AKQNQ--VEVAR 229

Query: 284 ALAEAGA 290
           +L + G 
Sbjct: 230 SLLQYGG 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 4e-28
 Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 53  QNDTGETALYISAANNFQDIFSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
           ++  G T L+++A     ++ + LL K  +  +    ++S +   H+ A++GH+ +A  L
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVL 297

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAAR 169
           +     +  +      +PL+ A+   ++ +V  +L   ADV+      K G + LH AA+
Sbjct: 298 IKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---AKTKLGYSPLHQAAQ 353

Query: 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEY--ILSADHLILNERDKK 227
            G  +IVT L+             G T L +A +    SV +   +++ +   +   DK 
Sbjct: 354 QGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 412

Query: 228 GNTAVHIA 235
             +     
Sbjct: 413 RMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  102 bits (258), Expect = 9e-24
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 148 ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCP 207
                     ++G T LH A+  G + IV  L+ R      + + K +T LHMA +    
Sbjct: 5   ISGGGGG---ESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHT 60

Query: 208 SVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
            V +Y+L   A    +N + K   T +H A R     +V LLL   + + N       T 
Sbjct: 61  EVAKYLLQNKAK---VNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTP 116

Query: 266 MDLADKLQYGDSTLEIKEALAEAGA 290
           + +A   + G   +E   AL E  A
Sbjct: 117 LHIA--AREGH--VETVLALLEKEA 137

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.6 bits (213), Expect = 4e-18
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 29/172 (16%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            N +G T L++ A      +   L+K    V+     +R      HVA+  G++ + K L
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA---TTRMGYTPLHVASHYGNIKLVKFL 330

Query: 112 VS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH 165
           +     +      +      SPL+ AA Q H D+V  +L   A  +    V  +G T L 
Sbjct: 331 LQHQADV-----NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN---EVSSDGTTPLA 382

Query: 166 TAARYGLINIVTALIDRDPE--IVTIKDKKGQTALHMAVKGQCPSVVEYILS 215
            A R G I++   L     E   V + DK   +             V+ IL 
Sbjct: 383 IAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILD 425

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  139 bits (353), Expect = 3e-38
 Identities = 60/246 (24%), Positives = 104/246 (42%), Gaps = 24/246 (9%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
           +D     +  +      +    L++   DV       + ++   H AA    + + K  +
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVR---QPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 113 SIWPEL-CKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAAR 169
           S    +     D ++T PL+ A  Q HL +V  ++   AD S        G + +H AA+
Sbjct: 63  SKGAIVDQLGGDLNST-PLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQ 118

Query: 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAV-KGQCPSVVEYILS--ADHLILNERDK 226
           +G  +IV  LI +  ++  + D+ G T L  A  +         +L+       +N  DK
Sbjct: 119 FGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDK 174

Query: 227 K-GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEAL 285
              NTA+H A       ++SLLL     +V+A N + E+A+DLA   Q  +  + +   L
Sbjct: 175 YHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLA--KQRKN--VWMINHL 229

Query: 286 AEAGAK 291
            EA   
Sbjct: 230 QEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  117 bits (297), Expect = 2e-30
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 25/208 (12%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT----FHVAAKKGHLGI 107
            +    T L+ +A NN  D+    +     V+ +        +      H A ++GHL +
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL------GGDLNSTPLHWATRQGHLSM 91

Query: 108 AKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH 165
             +L+    +     D    S ++ AA   H  +V  ++    DV    ++ +NG T L 
Sbjct: 92  VVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGMTPLM 147

Query: 166 TAARYG-LINIVTALIDRDPEIVTIKDKK-GQTALHMAVKGQCPSVVEYILS--ADHLIL 221
            AA     ++    L+  +  +  + DK    TALH AV     +V+  +L   A+   +
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---V 203

Query: 222 NERDKKGNTAVHIATRKCRPQIVSLLLS 249
           + ++ KG +A+ +A ++    +++ L  
Sbjct: 204 DAQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (271), Expect = 7e-27
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 14/174 (8%)

Query: 121 SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTA 178
             D  +T  +  A      +    +++   DV   R   K   T LH AA    I++V  
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKY 60

Query: 179 LIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIAT 236
            I +   +  +      T LH A +    S+V  ++   AD    +  D +G + +H+A 
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLAA 117

Query: 237 RKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           +     IV+ L++    DV+ ++    T +  A       S ++    L     
Sbjct: 118 QFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWA--AYRTHS-VDPTRLLLTFNV 167

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.4 bits (158), Expect = 7e-12
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
           +T  D      +  A +         ++    D   + + DK+  T +H A    R  +V
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD---VRQPDKENVTLLHWAAINNRIDLV 58

Query: 245 SLLLSYTSIDVNAI-NNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
              +S     V+ +  +   T +  A   + G   L +   L + GA
Sbjct: 59  KYYISK-GAIVDQLGGDLNSTPLHWA--TRQGH--LSMVVQLMKYGA 100

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 8e-08
 Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 41/133 (30%)

Query: 52  MQNDTGETALYISAANNFQ-DIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIA 108
           M +  G T L  +A      D    LL F   V    +  +   NT  H A   G+  + 
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN---LGDKYHKNTALHWAVLAGNTTVI 193

Query: 109 KELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168
             L+                                   A+V         G++AL  A 
Sbjct: 194 SLLLEA--------------------------------GANVD---AQNIKGESALDLAK 218

Query: 169 RYGLINIVTALID 181
           +   + ++  L +
Sbjct: 219 QRKNVWMINHLQE 231

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  140 bits (356), Expect = 4e-38
 Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 39/293 (13%)

Query: 15  FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFS 74
              AV++ D++ ++ +++        +             + G T L+ +   + +DI  
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQE------------EEGGWTPLHNAVQMSREDIVE 56

Query: 75  CLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133
            LL+   D  +   R ++    F +AA  G + + K  +S   ++   CD    +    A
Sbjct: 57  LLLRHGADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEA 112

Query: 134 AVQDHLDVVNTILD--ADV-------SCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184
           AV   +  +  +    A+V            +RK G TAL  AA  G + ++  L+D   
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 172

Query: 185 EIVTIKDKKGQTALHMAV----KGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRK 238
             V   D  G+ AL  A+         ++   +L   AD   +N R ++G T + +A  K
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEK 229

Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
               +V  LL    I++N  ++  +TA+ LA  ++      +I E L + GA 
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLA--VELKL--KKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  123 bits (312), Expect = 4e-32
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 27/226 (11%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
           +   G T   ++A      +    L    DV            T F  AA  G +   K 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF----YGFTAFMEAAVYGKVKALKF 123

Query: 111 LVS---------IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD---ADVSCTRIVRK 158
           L              E  +       + L  AA + H++V+  +LD   ADV+       
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN---ACDN 180

Query: 159 NGKTALHTAARYGLIN----IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
            G+ AL  A      +    I   L+D   ++  ++ ++G+T L +AV+ +   +V+ +L
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLL 239

Query: 215 SADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
             +H+ +N+ D  G TA+ +A      +I  LL        +  + 
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (307), Expect = 3e-31
 Identities = 50/234 (21%), Positives = 78/234 (33%), Gaps = 33/234 (14%)

Query: 57  GETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKELVS- 113
               L  +  N   D+   LL+   +V     +      T  H A +     I + L+  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVN---FQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 114 ---IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAA 168
                         +  +P   AA+   + ++   L   ADV+        G TA   AA
Sbjct: 62  GADP-----VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN---ECDFYGFTAFMEAA 113

Query: 169 RYGLINIVTALI---------DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
            YG +  +  L           +  E      K G TAL  A +     V++ +L     
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 220 ILNERDKKGNTAVHIATRK----CRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
            +N  D  G  A+  A           I  LLL +   DVN    + +T + LA
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
                 L  A +   +++V  L++    +   +++ G T LH AV+     +VE +L   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           AD      R K G T   +A      +++ L LS    DVN  +    TA   A    YG
Sbjct: 63  AD---PVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEA--AVYG 116

Query: 276 DSTLEIKEALAEAGA 290
              ++  + L + GA
Sbjct: 117 K--VKALKFLYKRGA 129

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 2e-12
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 191 DKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKK-GNTAVHIATRKCRPQIVSLL 247
             +    L  AV+ +   +V+ +L   A+   +N ++++ G T +H A +  R  IV LL
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGAN---VNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 248 LSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           L +   D         T   LA     G   +++ +     GA
Sbjct: 59  LRH-GADPVLRKKNGATPFLLA--AIAGS--VKLLKLFLSKGA 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  136 bits (346), Expect = 3e-37
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 16/245 (6%)

Query: 52  MQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
           M++    + L+ +A     DI   L++   +++     S         AA+  HL   K 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKY 62

Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170
           L+     +    D+  ++ L+ AA + H +VV  +L             G T +  A  Y
Sbjct: 63  LIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKG 228
             +++V  L+ +  +I  I+D +    LH A    C  + E +L+   D   L+  +  G
Sbjct: 122 KHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHG 177

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA 288
           ++ +HIA R+ R   V L LS    DV   N + ET +  A         +     +++A
Sbjct: 178 DSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCA--SLNSQ--VWSALQMSKA 232

Query: 289 GAKHA 293
               A
Sbjct: 233 LQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 68.2 bits (168), Expect = 3e-13
 Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
             ++ +  ++ LH A +     +   ++   A+   ++   +   T +  A      + V
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAV 60

Query: 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
             L+      V+  + +  T + LA   + G    E+ + L   G  
Sbjct: 61  KYLIKA-GALVDPKDAEGSTCLHLA--AKKGH--YEVVQYLLSNGQM 102

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  136 bits (344), Expect = 3e-37
 Identities = 47/239 (19%), Positives = 85/239 (35%), Gaps = 26/239 (10%)

Query: 57  GETALYISAANN-FQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS- 113
               L+ +   N F  +   L      +     + +      H +       I   L+S 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ---KDQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 114 ---IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD----ADVSCTRIVRKNGKTALHT 166
              +   L    D S  +P + A    +L+VV ++ D     D++        G T LH 
Sbjct: 59  MENV--NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT---NQGVTCLHL 113

Query: 167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDK 226
           A       +   LI+    +  IKDK  Q  LH A       ++E +       +N +DK
Sbjct: 114 AVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

Query: 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEAL 285
           +G T +  A  +       LL+     + + ++N+   A D+A          ++K+  
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA-------LNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  131 bits (331), Expect = 3e-35
 Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 12/202 (5%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
           ++  G   L+ S +    +I S LL    +V +      S    FH+A   G+L + K L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 112 VSIW--PELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTA 167
                 P+L K  +   T  L+ A  +   +V   +++  A V   RI  K  +  LH A
Sbjct: 92  YDRPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLIENGASV---RIKDKFNQIPLHRA 147

Query: 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKK 227
           A  G + ++  L       V  +DK+G T L  A+          ++       +  D K
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207

Query: 228 GNTAVHIATRKCRPQIVSLLLS 249
           G  A  +A  +   Q+    L+
Sbjct: 208 GAKAEDVALNE---QVKKFFLN 226

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  139 bits (352), Expect = 6e-37
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 40/267 (14%)

Query: 52  MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
           +       A  ++A N    + + L +    EI+ +    + + F +AA+ GHL +   L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

Query: 112 VSIWPELCKSCDSS--NTSPLYSAAVQDHLDVVNTILDADVSCTR--------------- 154
             + P    +   +    +  ++A  + H +V+N +LD  V                   
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242

Query: 155 --IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE- 211
                 N    +H A +    + V  L+ +          +G   L   ++     +++ 
Sbjct: 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE------CLQGFYMLRNLIRRNDEVLLDD 296

Query: 212 --YILSADHLI----LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
             ++LS   +             N  + +A R       +LLLS  S+      N     
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN----N 352

Query: 266 MDLADKLQYGDSTLEIKEALAEAGAKH 292
             + +        L+++    E    H
Sbjct: 353 YYINET----GGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 33/296 (11%)

Query: 20  RSGDLETLKNIIDNLTKDEAPDGSSLVSELMA--MQNDTGETALYISAANNFQDIFSCLL 77
            + ++E ++ ++         +   L S+     ++++       I+  ++  D    LL
Sbjct: 56  GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL 115

Query: 78  KF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKS-CDSSNTSPLYSAAV 135
                V+++      +   F +AA+ GHL +   L  + P    +   + N      AA 
Sbjct: 116 TSDEIVKVI---QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 172

Query: 136 QDHLDVVNTILDADVSCTRI-VRKNGKTALHTAA-RYGLINIVTALIDRDPEIVTIKDKK 193
             HL V+N + +   +     ++     A   AA   G  N++  L+D    +    +  
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML-AYAEIH 231

Query: 194 GQTALHMAVKGQCPSVVEYILSAD----------HLILNERD--KKGNTAVHIATRKCRP 241
                   V       V  +                 L  +    +G   +    R+   
Sbjct: 232 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 291

Query: 242 QIVSLLLSYTSI-------DVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
            ++  +    SI           I       + LA  L+ G+        L    +
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA--LRLGN--QGACALLLSIPS 343

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (350), Expect = 1e-36
 Identities = 42/244 (17%), Positives = 81/244 (33%), Gaps = 30/244 (12%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
           QN  G TAL+++      D    L                    H+A       +   LV
Sbjct: 49  QNRFGCTALHLACKFGCVDTAKYLASVG----EVHSLWHGQKPIHLAVMANKTDLVVALV 104

Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL 172
                           P       D  +V    + +      +    G+TALH     G 
Sbjct: 105 E-------GAKERGQMPESLLNECDEREVNE--IGSH-----VKHCKGQTALHWCVGLGP 150

Query: 173 --INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI----LNERDK 226
             + ++  L+       T KDK  +T L  A++ +    ++ ++          L+  +K
Sbjct: 151 EYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALA 286
           +GN+ +H A       +    +    IDVN  +N+    + L+  ++     + + + L 
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLS--VRAAM--VLLTKELL 264

Query: 287 EAGA 290
           +   
Sbjct: 265 QKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  132 bits (335), Expect = 1e-34
 Identities = 31/290 (10%), Positives = 87/290 (30%), Gaps = 55/290 (18%)

Query: 18  AVRSGDLETLKNIIDNLTKDE-------APDGSSLVSELMA-MQNDTGETALYISAANNF 69
           AV +   + +  +++   +                V+E+ + +++  G+TAL+       
Sbjct: 91  AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP 150

Query: 70  QDIFSCLLKFCDVEIVK--IRSRSDMNT--------FHVAAKKGHLGIAKELVSIWPELC 119
           + +          E++K  ++  +               A +  +      ++   P   
Sbjct: 151 EYL----------EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 120 K----SCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLI 173
                  +    S L+ A + +  DV    ++   DV+   +        L+ + R  ++
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRAAMV 257

Query: 174 NIVTALIDRDPEIVTI------------KDKKGQTALHMAVKGQCPSVVEYILS--ADHL 219
            +   L+ +    +                      +  A       V++ +     +  
Sbjct: 258 LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-- 315

Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
            +      G        +K  P +  + L+  S  V   +  R  +  ++
Sbjct: 316 -VVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 2e-30
 Identities = 39/250 (15%), Positives = 81/250 (32%), Gaps = 42/250 (16%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            +D     ++++A     D    L++         I++R      H+A K G +  AK L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPT---IQNRFGCTALHLACKFGCVDTAKYL 72

Query: 112 VSIWPELCKSCD---SSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168
            S                  P++ A + +  D+V  +++          + G+       
Sbjct: 73  AS------VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK-------ERGQMPESLLN 119

Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS--VVEYILS--ADHLILNER 224
                 +             +K  KGQTALH  V        +++ ++   A       +
Sbjct: 120 ECDEREVNEIGSH-------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAK 169

Query: 225 DKKGNTAVHIATRKCRPQIVSLLLSYTS----IDVNAINNQRETAMDLADKLQYGDSTLE 280
           DK   T +  A      + + L++        + ++  N Q  + +  A  +       +
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA--ILINW--ED 225

Query: 281 IKEALAEAGA 290
           +     E G 
Sbjct: 226 VAMRFVEMGI 235

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
               D +    +H+A +      V  ++           +++ G TA+H+A +       
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS---PTIQNRFGCTALHLACKFGCVDTA 69

Query: 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
             L S      +  + Q    + LA  +       ++  AL E   +
Sbjct: 70  KYLASV-GEVHSLWHGQ--KPIHLA--VMANK--TDLVVALVEGAKE 109

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 222 NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEI 281
            + D +    +H+A RK +   V  L+    +     N    TA+ LA   ++G   ++ 
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLA--CKFGC--VDT 68

Query: 282 KEALAEAGAKHARYVGQ 298
            + LA  G  H+ + GQ
Sbjct: 69  AKYLASVGEVHSLWHGQ 85

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  133 bits (336), Expect = 4e-36
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 21/220 (9%)

Query: 57  GETALYISAANNFQDIFSCLLKFC-DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW 115
           G+  ++ +           L     D+  +   S ++         KG  G+        
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNW---WKGTSKGRTGLIPSNY--- 65

Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLI 173
                    S  +PL+ AA + +L  +   LD    V+    + K G TAL+ A   G  
Sbjct: 66  ---VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN---GLDKAGSTALYWACHGGHK 119

Query: 174 NIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTA 231
           +IV  L  +    +  ++K G TALH A       +V+ +L+  A     + R+ +   A
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLA 176

Query: 232 VHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271
             +AT      ++              N +     + +D 
Sbjct: 177 FDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (288), Expect = 2e-29
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 16/190 (8%)

Query: 52  MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
              D  +T  +   +     +            V  ++ S  N  H AAK+G+L   +E 
Sbjct: 40  YITDMSDTNWWKGTSKGRTGLIPSN-------YVAEQAESIDNPLHEAAKRGNLSWLREC 92

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD---ADVSCTRIVRKNGKTALHTAA 168
           +     +    D + ++ LY A    H D+V  +      +++      K G TALH AA
Sbjct: 93  LDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN---KLGDTALHAAA 148

Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKG 228
             G  +IV  L+ +      +++ + + A  MA    C S+++     D +     + + 
Sbjct: 149 WKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAED 206

Query: 229 NTAVHIATRK 238
                 +  +
Sbjct: 207 YLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.5 bits (202), Expect = 8e-18
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           K G+  +  A           L   + +I+        T            ++       
Sbjct: 10  KPGQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRTGLIP------ 62

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
              + E+ +  +  +H A ++     +   L    + VN ++    TA+  A
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWA 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 54/186 (29%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A + G+L  L+  +DN            V+      +  G TALY               
Sbjct: 80  AAKRGNLSWLRECLDN--------RVG-VNG----LDKAGSTALYW-------------- 112

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
                                A   GH  I + L +         +    + L++AA + 
Sbjct: 113 ---------------------ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG 151

Query: 138 HLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQ 195
           + D+V  +L   A      +     K A   A      +++      D    T+ + +  
Sbjct: 152 YADIVQLLLAKGARTD---LRNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAEDY 207

Query: 196 TALHMA 201
                +
Sbjct: 208 LDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 15/102 (14%)

Query: 191 DKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
            K GQ  +  A+    P   + +     D   +       +T     T K R  ++    
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGD---IIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
              S  V       +  +  A   + G+  L       +   
Sbjct: 63  ---SNYVAEQAESIDNPLHEA--AKRGN--LSWLRECLDNRV 97

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 1/51 (1%)

Query: 221 LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271
             +  K G   V  A     P+    L      D+  I +  +T       
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTS 54

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  134 bits (341), Expect = 4e-36
 Identities = 53/288 (18%), Positives = 92/288 (31%), Gaps = 50/288 (17%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           AV       L  ++      E  D          +QND G+TAL+++A          L 
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLD----------LQNDLGQTALHLAAILGEASTVEKLY 65

Query: 78  KFC-DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS-------------IWPELCKSCD 123
                V +     R      H+A +      A  L+              +      + D
Sbjct: 66  AAGAGVLV---AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 124 SSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALID 181
           +S+      +      +      D    +        +G T LH A  +    +V  L D
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN---YDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 182 RDPEIVTIKDKK-GQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRK 238
              ++    +   G+T LH+AV+ Q  SV+E +L   AD      R   G T +  A  +
Sbjct: 180 AGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLR 235

Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDLA----------DKLQYGD 276
             P +  LL ++           + +    +          +  +Y D
Sbjct: 236 PNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  115 bits (290), Expect = 5e-29
 Identities = 46/255 (18%), Positives = 85/255 (33%), Gaps = 27/255 (10%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
             + G+TAL+++  +  +     LL F    E + +++       H+AA  G     ++L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVV---------NTILDADVSCTRIVRKNGKT 162
            +    +    +    + L+ A                  +    +D   T+       T
Sbjct: 65  YAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 163 ----ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
               A   +             D   ++   ++  G T LH+AV  +   +V  +    A
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 217 DHLILNERDKK-GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           D   LN+ +   G T +H+A       ++ LLL     D  A      T +  A  L   
Sbjct: 183 D---LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSA--LLRP 236

Query: 276 DSTLEIKEALAEAGA 290
                +   L   GA
Sbjct: 237 --NPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 190 KDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
             + G TALH+AV  Q    ++++L   A H  L+ ++  G TA+H+A        V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 248 LSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH 292
            +     V        TA+ LA   +           L +    H
Sbjct: 65  YAA-GAGVLVAERGGHTALHLA--CRVRA--HTCACVLLQPRPSH 104

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSY--TSIDVNAINNQRETAMDLADKLQYGDS 277
           +     + G+TA+H+A        +  LL +      ++  N+  +TA+ LA     G+ 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGE- 57

Query: 278 TLEIKEALAEAGA 290
                E L  AGA
Sbjct: 58  -ASTVEKLYAAGA 69

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  133 bits (337), Expect = 5e-36
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 34/248 (13%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-----CDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
             + G++ L+++  +  + +   +++        +     ++       H+A       I
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF---QNNLQQTPLHLAVITNQPEI 60

Query: 108 AKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVR---K 158
           A+ L+           +  D    +PL+ A  Q  L  V  +           I++    
Sbjct: 61  AEALLGAGCDP-----ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKK-GQTALHMAVKGQCPSVVEYILS-- 215
           NG T LH A+ +G + IV  L+    ++   ++   G+TALH+AV  Q P +V  +L   
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           AD   +N    +G +   +   +   +I   L   T ++   +  + E       +    
Sbjct: 175 AD---VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTE---- 226

Query: 276 DSTLEIKE 283
               E  E
Sbjct: 227 SEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  103 bits (258), Expect = 4e-25
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 19/144 (13%)

Query: 158 KNGKTALHTAARYG----LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
           ++G + LH A  +      + ++  +      +   ++   QT LH+AV    P + E +
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 214 LS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY-----TSIDVNAINNQRETAM 266
           L    D      RD +GNT +H+A  +     V +L            + A N    T +
Sbjct: 65  LGAGCD---PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 267 DLADKLQYGDSTLEIKEALAEAGA 290
            LA    +G   L I E L   GA
Sbjct: 122 HLA--SIHGY--LGIVELLVSLGA 141

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 223 ERDKKGNTAVHIATRK----CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDST 278
           +  + G++ +H+A          +++  +       +N  NN ++T + LA         
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQ---- 57

Query: 279 LEIKEALAEAGA 290
            EI EAL  AG 
Sbjct: 58  PEIAEALLGAGC 69

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  133 bits (336), Expect = 3e-35
 Identities = 52/244 (21%), Positives = 97/244 (39%), Gaps = 23/244 (9%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            N  G TAL+ +  ++  D+   L++   ++              H AA  G+L IA+ L
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENGANINQ---PDNEGWIPLHAAASCGYLDIAEYL 125

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171
           +S    +    +S   +PL  A  +   +++   ++           + + A     R  
Sbjct: 126 ISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIM 177

Query: 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGN 229
           L +    L       V    K G TALH+A       V++ ++    D   +N +D  G 
Sbjct: 178 LRDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGW 233

Query: 230 TAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAG 289
           T +H A    + +   +L+     D+ A+N   +TA D+AD+   G     ++E   +  
Sbjct: 234 TPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDILG----YLEELQKKQN 288

Query: 290 AKHA 293
             H+
Sbjct: 289 LLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  114 bits (289), Expect = 9e-29
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 85  VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT 144
           +K+          +    G     +  V    +  K         L  A      + V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT-KVKFDDGAVFLA-ACSSGDTEEVLR 58

Query: 145 ILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
           +L+  AD++       +G TALH A     +++V  L++    I    D +G   LH A 
Sbjct: 59  LLERGADINYAN---VDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA 114

Query: 203 KGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
                 + EY++S  A    +   + +G+T + IA  +   +++   ++   +D+ A   
Sbjct: 115 SCGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

Query: 261 QRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           + E  M             + ++ L     
Sbjct: 172 EEERIM-----------LRDARQWLNSGHI 190

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (270), Expect = 3e-26
 Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 37/247 (14%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKEL 111
                     + ++   +    LL+   D+    +    D  T  H A    ++ + K L
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV----DGLTALHQACIDDNVDMVKFL 92

Query: 112 VS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH 165
           V     I        D+    PL++AA   +LD+   ++   A V     V   G T L 
Sbjct: 93  VENGANI-----NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLD 144

Query: 166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNE 223
            A    +  ++   ++R       +    + A     +       +++ S   +      
Sbjct: 145 IAEEEAMEELLQNEVNR-------QGVDIEAARKEEERIMLRDARQWLNSGHIN---DVR 194

Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKE 283
             K G TA+H+A  K   +++ LL+     DVN  +    T +  A    +G    E   
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAA--AHWGK--EEACR 249

Query: 284 ALAEAGA 290
            L E   
Sbjct: 250 ILVENLC 256

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.9 bits (224), Expect = 4e-20
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 18/180 (10%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKEL 111
            N  G+T L I+     +++    +    V         D+        +       + L
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGV---------DIEAARKEEERIMLRDARQWL 185

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAAR 169
            S           S  + L+ AA + + +V+  ++    DV+       +G T LH AA 
Sbjct: 186 NSGHIND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YDGWTPLHAAAH 241

Query: 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGN 229
           +G       L++   ++    +K GQTA  +A +     + E     + L  +E+ +K +
Sbjct: 242 WGKEEACRILVENLCDM-EAVNKVGQTAFDVADEDILGYLEELQKKQNLLH-SEKREKKS 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  133 bits (337), Expect = 6e-35
 Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 35/243 (14%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
           ++  G   L+ + +    ++   LLK    V              H AA K  + +   L
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNA---MDLWQFTPLHEAASKNRVEVCSLL 143

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVV------NTILDADVSC-TRIVR------- 157
           +S   +     +    S +  A   +  + +      +++L A        V+       
Sbjct: 144 LSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202

Query: 158 ------KNGKTALHTAARYGLIN---IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS 208
                 ++ +TALH A          +   L+ +   +   K+K   T LH+A +     
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHND 261

Query: 209 VVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAM 266
           V+E +    A    +N  D  G TA+H A      Q   LLLSY   D + I+ Q  TA 
Sbjct: 262 VMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAA 317

Query: 267 DLA 269
            + 
Sbjct: 318 QMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (305), Expect = 2e-30
 Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 48/270 (17%)

Query: 53  QNDTGETAL-YISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
             +  +  L   + + N + + + L     +               H+AA    + I + 
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA---SDGRKSTPLHLAAGYNRVRIVQL 76

Query: 111 LVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTAL 164
           L+     +      + D     PL++A    H +V   +L   A V+    +     T L
Sbjct: 77  LLQHGADV-----HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN---AMDLWQFTPL 128

Query: 165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD------- 217
           H AA    + + + L+    +  T+ +  G++A+ MA   +    + Y            
Sbjct: 129 HEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187

Query: 218 -------------HLILNERDKKGNTAVHIATRKC---RPQIVSLLLSYTSIDVNAINNQ 261
                         +I  ++ +   TA+H A       R Q+  LLL     +VN  N  
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKD 246

Query: 262 RETAMDLADKLQYGDSTLEIKEALAEAGAK 291
             T + +A   +      ++ E L + GAK
Sbjct: 247 FMTPLHVA--AERAH--NDVMEVLHKHGAK 272

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (295), Expect = 3e-29
 Identities = 43/236 (18%), Positives = 75/236 (31%), Gaps = 44/236 (18%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            +    T L+ +A+ N  ++ S LL    D  +    +    +   +A            
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERLTYE 176

Query: 112 VSIWPELCKSC--------------------DSSNTSPLYSAAVQDH---LDVVNTILD- 147
                 L  +                       S+ + L+ A    H     V   +L  
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236

Query: 148 -ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC 206
            A+V+      K+  T LH AA     +++  L     ++    D  GQTALH A     
Sbjct: 237 GANVN---EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGH 292

Query: 207 PSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
                 +LS  +D    +    +G TA  +       + V  +LS  S  +   + 
Sbjct: 293 LQTCRLLLSYGSD---PSIISLQGFTAAQMGN-----EAVQQILSE-STPMRTSDV 339

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (276), Expect = 1e-26
 Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 17/188 (9%)

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           +      L +A   +   ++  +     +            T LH AA Y  + IV  L+
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPLNVNCH---ASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRK 238
               ++   KDK G   LH A       V E +L   A    +N  D    T +H A  K
Sbjct: 79  QHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFTPLHEAASK 134

Query: 239 CRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK-HARYVG 297
            R ++ SLLLS+   D   +N   ++A+D+A          E      +  +   A    
Sbjct: 135 NRVEVCSLLLSH-GADPTLVNCHGKSAVDMA--PTPEL--RERLTYEFKGHSLLQAAREA 189

Query: 298 QVDEAMEL 305
            + +  + 
Sbjct: 190 DLAKVKKT 197

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.6 bits (244), Expect = 2e-22
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 45/214 (21%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLK---------FCDVEIVK---------IRSRSDMN 94
            N  G++A+ ++     ++  +   K           D+  VK          +      
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212

Query: 95  T-FHVAAKKGHLG---IAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL 146
           T  H A    H     +A+ L+     +        +    +PL+ AA + H DV+  + 
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANV-----NEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 147 D--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG 204
              A ++    +   G+TALH AA  G +     L+    +  +I   +G TA  M  + 
Sbjct: 268 KHGAKMNA---LDSLGQTALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMGNE- 322

Query: 205 QCPSVVEYILSADHLILNERDKKGNTAVHIATRK 238
                V+ ILS     +   D         A++ 
Sbjct: 323 ----AVQQILSES-TPMRTSDVDYRL--LEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.0 bits (188), Expect = 3e-15
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 23/135 (17%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
           + GK+AL              L D   + V   + K    L  A  G    ++  +    
Sbjct: 2   EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
            +    +  D + +T +H+A    R +IV LLL +   DV+A +      +  A    YG
Sbjct: 49  VN---CHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNA--CSYG 102

Query: 276 DSTLEIKEALAEAGA 290
               E+ E L + GA
Sbjct: 103 H--YEVTELLLKHGA 115

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.1 bits (139), Expect = 5e-09
 Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 47/194 (24%)

Query: 18  AVRSGDLETLKNIIDNLTKDEA--PDGSSLVSELMA------MQNDTGETALYISAAN-- 67
           A      E L       +  +A      + V + +A       Q  + ETAL+ + A+  
Sbjct: 164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223

Query: 68  -NFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSS 125
              + +   LL+   +V     +++  M   HVAA++ H  + + L     ++  + DS 
Sbjct: 224 PKRKQVAELLLRKGANVNE---KNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSL 279

Query: 126 NTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALH------------------ 165
             + L+ AA+  HL     +L   +D S   I+   G TA                    
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPS---IISLQGFTAAQMGNEAVQQILSESTPMRT 336

Query: 166 --------TAARYG 171
                    A++ G
Sbjct: 337 SDVDYRLLEASKAG 350

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (332), Expect = 7e-35
 Identities = 57/300 (19%), Positives = 103/300 (34%), Gaps = 50/300 (16%)

Query: 18  AVRSGDLETLK---------NIIDNLTKDE---------APDGSSLVSELMAMQNDTGET 59
                                 +D                  G  L+S  +     +  +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 60  ALYISAANNFQDIFSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS----I 114
            ++ +A +  Q     L+ +   V    I +   ++  H A   GHL   K L+     +
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVN---IITADHVSPLHEACLGGHLSCVKILLKHGAQV 118

Query: 115 WPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGL 172
                    +   +PL++A V    D VN +L   A V        +  + +H AAR G 
Sbjct: 119 -----NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE----SDLASPIHEAARRGH 169

Query: 173 INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNT 230
           +  V +LI     I   K     T L++A + Q  + V+ +L   AD   +N + K  ++
Sbjct: 170 VECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-QGKGQDS 224

Query: 231 AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
            +H   R    ++  LL+ +   D  A N + +  ++L             +  L   GA
Sbjct: 225 PLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELV--PPESP---LAQLFLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (293), Expect = 2e-29
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 34/217 (15%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
                 + L+ +           LLK    V  V      D +T    A   G       
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA----DWHTPLFNACVSGSWDCVNL 143

Query: 111 LVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTAL 164
           L+     +        +S   SP++ AA + H++ VN+++    ++        +  T L
Sbjct: 144 LLQHGASV------QPESDLASPIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPL 194

Query: 165 HTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLI 220
           + A        V  L++   D      + K   + LH  V+     +   ++   AD   
Sbjct: 195 YLACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVRTASEELACLLMDFGAD--- 247

Query: 221 LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA 257
              ++ +G   V +   +    +  L L      +  
Sbjct: 248 TQAKNAEGKRPVELVPPES--PLAQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (276), Expect = 3e-27
 Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 24/199 (12%)

Query: 98  VAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT 153
           + +   H   +  LV     +     K      + P           + N ++       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDA---- 56

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
                +  + +H AA +G    +  LI +    V I      + LH A  G   S V+ +
Sbjct: 57  ----VSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 214 LS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271
           L   A    +N      +T +  A        V+LLL +    V   ++   + +  A  
Sbjct: 112 LKHGAQ---VNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPESD-LASPIHEA-- 164

Query: 272 LQYGDSTLEIKEALAEAGA 290
            + G   +E   +L   G 
Sbjct: 165 ARRGH--VECVNSLIAYGG 181

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (328), Expect = 8e-35
 Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 32/253 (12%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-----CDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
            ++ G+T L+I+           L+        +++I    +       H+A       +
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITTLPSV 61

Query: 108 AKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV---RKNG 160
            + LV+           + D    +  + A        +  +LD+    T  +     +G
Sbjct: 62  VRLLVTAGASP-----MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 161 KTALHTAARYGLINIVTALIDRDPEIVTIKDKK-GQTALHMAVKGQCPSVVEYILS--AD 217
            TALH A        V  L++R  +I    D K G++ L  AV+    S+V+ +L   A+
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
              +N +   G++A+H A+ +    +V  L+     D +  N   +T + +A        
Sbjct: 176 ---VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA--RSRR-- 227

Query: 278 TLEIKEALAEAGA 290
            ++I    A   A
Sbjct: 228 VIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.6 bits (182), Expect = 6e-15
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 14/122 (11%)

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS------ADHLILNERDKKGNTAVHIATRKC 239
           + T  D+ G T LH+AV       V  +++       +   L+  +    T +H+A    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITT 57

Query: 240 RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQV 299
            P +V LL++       A++   +TA  LA   ++         AL ++ A     +   
Sbjct: 58  LPSVVRLLVTA-GASPMALDRHGQTAAHLA--CEHRS--PTCLRALLDSAAPGTLDLEAR 112

Query: 300 DE 301
           + 
Sbjct: 113 NY 114

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  130 bits (330), Expect = 9e-34
 Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 45/294 (15%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
              +G+         NL     P+                   L+  AA +   I   + 
Sbjct: 68  GYGNGNDFLGDFNHTNLQIPTEPE-------------PESPIKLHTEAAGS-YAITEPIT 113

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC-------DSSNTSPL 130
           +   V I+    R +    H  A       +++L+    + C +        D    +PL
Sbjct: 114 R-ESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL 170

Query: 131 YSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
             A +     +V  ++   AD +      K+ ++ALH AA      ++  +++       
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYN---KSERSALHQAAANRDFGMMVYMLNSTKLKGD 227

Query: 189 I--KDKKGQTALHMAVKGQC---PSVVEYILS--AD-----HLILNERDKKGNTAVHIAT 236
           I   D+ G TAL +    +     +  + ++   A          +    KG TA+H A 
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287

Query: 237 RKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           +     IV  L+     + +  +   +T + LA   Q G   +E+   L + GA
Sbjct: 288 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA--AQEGR--IEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  126 bits (320), Expect = 2e-32
 Identities = 44/248 (17%), Positives = 91/248 (36%), Gaps = 26/248 (10%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
              +   E  +++I +  K+    G+ + +      +    T L ++     + + + L+
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNA-----MDCDENTPLMLAVLARRRRLVAYLM 186

Query: 78  KF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK--SCDSSNTSPLYSAA 134
           K   D  I    ++S+ +  H AA     G+   +++           D +  + L   A
Sbjct: 187 KAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243

Query: 135 VQDHLDVVNT----------ILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184
             +  D V +          +     +     +  G+TALH AA+   + IV  L+    
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 185 EIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQ 242
                +D+ G+T + +A +     VV Y++   A    +   D   +TA  +A       
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHN 360

Query: 243 IVSLLLSY 250
           IV +    
Sbjct: 361 IVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  125 bits (316), Expect = 7e-32
 Identities = 46/263 (17%), Positives = 95/263 (36%), Gaps = 36/263 (13%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVK------IRSRSDMNTFHVAAKKGHLG 106
                 T L+  A+N+  +    L+     E +            +     +A       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 107 IAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVV-----NTILDADVSCTRIVRKNGK 161
           +   L+    +     + S  S L+ AA      ++     +T L  D+     + +NG 
Sbjct: 181 LVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE---ELDRNGM 236

Query: 162 TALHTAARYG---LINIVTALIDRDPEI-------VTIKDKKGQTALHMAVKGQCPSVVE 211
           TAL   A       +     L+++  ++          +  KG+TALH A +     +V+
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296

Query: 212 YILS---ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDL 268
           Y++    ++    +++D+ G T + +A ++ R ++V  L+      V A++    TA  L
Sbjct: 297 YLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQL 352

Query: 269 ADKLQYGDSTLEIKEALAEAGAK 291
           A           I +       +
Sbjct: 353 A--QANNH--HNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  119 bits (300), Expect = 1e-29
 Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 34/251 (13%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
             + + +L  ++ + +                       +         G+  +     +
Sbjct: 34  ITSSQHSLLEASYDGYIKR---------QRNEL--QHYSLYPNPQGYGNGNDFLGDFNHT 82

Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
                 +    S    L++ A      +   I     ++    I  ++ +T LH  A   
Sbjct: 83  NLQIPTEPEPESPI-KLHTEA-AGSYAITEPITRESVNI----IDPRHNRTVLHWIASNS 136

Query: 172 LINIVTALIDRDPEI-------VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILN 222
                  LI  + +        V   D    T L +AV  +   +V Y++   AD     
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PT 193

Query: 223 ERDKKGNTAVHIATRKCRPQIVSLLLSYTSI--DVNAINNQRETAMDLADKLQYGDSTLE 280
             +K   +A+H A       ++  +L+ T +  D+  ++    TA+ +    +  D  + 
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD-QVA 252

Query: 281 IKEALAEAGAK 291
             + L E GAK
Sbjct: 253 SAKLLVEKGAK 263

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 42/189 (22%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A  + D   +  ++++       +            +  G TAL I A N  +D      
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIE----------ELDRNGMTALMIVAHNEGRDQ----- 250

Query: 78  KFCDVEIVK--IRSRSDMNTF----------------HVAAKKGHLGIAKELVSIWPELC 119
               V   K  +   + ++                  H AA+  ++ I K LV       
Sbjct: 251 ----VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

Query: 120 KSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVT 177
              D    +P+  AA +  ++VV  ++   A V     V     TA   A      NIV 
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE---AVDATDHTARQLAQANNHHNIVD 363

Query: 178 ALIDRDPEI 186
                 PE 
Sbjct: 364 IFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 16/147 (10%), Positives = 34/147 (23%), Gaps = 18/147 (12%)

Query: 151 SCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV 210
                   + + +L  A+  G I                                   + 
Sbjct: 28  RKNHQSITSSQHSLLEASYDGYIKRQ----------RNELQHYSLYPNPQGYGNGNDFLG 77

Query: 211 EYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLAD 270
           ++  +   +   E + +    +H         I   +    S+++    + R T +    
Sbjct: 78  DFNHTNLQIP-TEPEPESPIKLHTEAAGSY-AITEPITRE-SVNIIDPRHNR-TVLHWI- 132

Query: 271 KLQYGDSTLEIKEALAEAGAKHARYVG 297
                    E  E L    AK     G
Sbjct: 133 -ASNSS--AEKSEDLIVHEAKECIAAG 156

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  125 bits (316), Expect = 1e-33
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 15/207 (7%)

Query: 52  MQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
           M+       L  +   + + +   L      V+             ++A     + IAK 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDE---VDTEGNTPLNIAVHNNDIEIAKA 57

Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170
           L+    ++    +S + SP   A  Q   +++  +L           + G  AL  AA  
Sbjct: 58  LIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS-----VVEYILS--ADHLILNE 223
           G I+ V  L++   E +  ++  G TAL  AV  +  +     +V+ ++   AD    + 
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSI 173

Query: 224 RDKKGNTAVHIATRKCRPQIVSLLLSY 250
           +D  G TA+  A +K   +I  +L  Y
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  110 bits (277), Expect = 5e-28
 Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 12/190 (6%)

Query: 87  IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL 146
           +++         A ++    + + L     ++    D+   +PL  A   + +++   ++
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 147 D--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG 204
           D  AD++   +      +    A   G   I+  ++      +   ++ G  AL  A + 
Sbjct: 60  DRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 205 QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ-----IVSLLLSYTSIDVNAIN 259
                V+ +L      ++ ++  G TA+  A            IV LL+     D +  +
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKD 175

Query: 260 NQRETAMDLA 269
           N   TAMD A
Sbjct: 176 NSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.8 bits (224), Expect = 6e-21
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            +  G T L I+  NN  +I   L+    D+ +   ++    + +  A  +G   I   +
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADINL---QNSISDSPYLYAGAQGRTEILAYM 91

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD---ADVSCTRIVRKNGKTALHTAA 168
           +          +    + L  AA + H+D V  +L+    D+         G TAL  A 
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID---FQNDFGYTALIEAV 148

Query: 169 RYGLIN-----IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
                N     IV  L++   +  +IKD  G+TA+  A +     + + +   +
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  124 bits (313), Expect = 2e-33
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 12/173 (6%)

Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
            H  A +G L   KE +     L    D    +PL  A+    ++ V  +L+  AD    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-- 63

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
            I+ K  ++AL  A+  G  +IV  L++RD +I  I D  G T L  AV+G     VE +
Sbjct: 64  -ILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 214 LS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRET 264
           L+  AD   L      G T + +A      ++  ++ ++  + +   N     
Sbjct: 122 LARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  112 bits (284), Expect = 2e-29
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 129 PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
            ++  A Q  LD +   L    +      + G T L  A+ +G I  V  L++   +   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PH 63

Query: 189 IKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSL 246
           I  K+ ++AL +A  G    +V  +L    D   +N  D  G T +  A R    + V  
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 247 LLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
           LL+  + D+    +   T MDLA  +  G    ++++ +     K
Sbjct: 121 LLARGA-DLTTEADSGYTPMDLA--VALGY--RKVQQVIENHILK 160

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 96.3 bits (241), Expect = 2e-23
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
              ++H  A  G ++ +   + +   +V   D++G T L  A        V ++L   AD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS 277
               +   K+  +A+ +A+      IV LLL    +D+N  +    T +  A  ++    
Sbjct: 62  ---PHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYA--VRGNH- 114

Query: 278 TLEIKEALAEAGA 290
            ++  EAL   GA
Sbjct: 115 -VKCVEALLARGA 126

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 95.6 bits (239), Expect = 3e-23
 Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 67/221 (30%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
               G+L+ LK  +          G +LV++     ++ G T L                
Sbjct: 9   LAAQGELDQLKEHLRK--------GDNLVNK----PDERGFTPLIW-------------- 42

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSA 133
                                A+  G +   + L+                   S L  A
Sbjct: 43  ---------------------ASAFGEIETVRFLLEWGADP-----HILAKERESALSLA 76

Query: 134 AVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD 191
           +   + D+V  +L+   D++       NG T L  A R   +  V AL+ R  + +T + 
Sbjct: 77  STGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEA 132

Query: 192 KKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNT 230
             G T + +AV      V + I +       L + +     
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENHILK---LFQSNLVPAD 170

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (318), Expect = 2e-33
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 22/214 (10%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
            + TGETAL+++A  +  D    LL+   D  I      +   T  H A      G+ + 
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANIQD----NMGRTPLHAAVSADAQGVFQI 76

Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAA 168
           L+        +     T+PL  AA      ++  +++  ADV+    V   GK+ALH AA
Sbjct: 77  LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN---AVDDLGKSALHWAA 133

Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDK 226
               ++    L+        +++ + +T L +A +       + +L   A+    +  D 
Sbjct: 134 AVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDH 189

Query: 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
                  IA  +    IV LL  Y     N + +
Sbjct: 190 MDRLPRDIAQERMHHDIVRLLDEY-----NLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (308), Expect = 3e-32
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 26/205 (12%)

Query: 97  HVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD---AD 149
           H+AA+      AK L+              D+   +PL++A   D   V   ++     D
Sbjct: 30  HLAARYSRSDAAKRLLEASADA-----NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

Query: 150 VSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSV 209
           +        +G T L  AAR  +  ++  LI+   ++    D  G++ALH A        
Sbjct: 85  LD---ARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDA 140

Query: 210 VEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMD 267
              +L   A+    + ++ +  T + +A R+   +   +LL +   + +  ++      D
Sbjct: 141 AVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRD 196

Query: 268 LADKLQYGDSTLEIKEALAEAGAKH 292
           +A   +      +I   L E     
Sbjct: 197 IA--QERMH--HDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  105 bits (266), Expect = 2e-26
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT 196
           D   V++  +    S      + G+TALH AARY   +    L++   +   I+D  G+T
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRT 60

Query: 197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN 256
            LH AV      V + ++      L+ R   G T + +A R     ++  L++    DVN
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVN 119

Query: 257 AINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           A+++  ++A+  A      +  ++    L + GA
Sbjct: 120 AVDDLGKSALHWA--AAVNN--VDAAVVLLKNGA 149

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  125 bits (317), Expect = 5e-33
 Identities = 44/255 (17%), Positives = 94/255 (36%), Gaps = 30/255 (11%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCD-VEIVK--------IRSRSDMN---TFHVAA 100
           +   G T L I++ +          +  D   ++         + +++D       H+AA
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA 65

Query: 101 KKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD---ADVSCTRIVR 157
           +      AK L+    +     D+   +PL++A   D   V   ++     D+       
Sbjct: 66  RYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD---ARM 121

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
            +G T L  AAR  +  ++  LI+   ++    D  G++ALH A           +L   
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           A+    + ++ +  T + +A R+   +   +LL +   + +  ++      D+A   +  
Sbjct: 181 AN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIA--QERM 234

Query: 276 DSTLEIKEALAEAGA 290
               +I   L     
Sbjct: 235 H--HDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  123 bits (311), Expect = 3e-32
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 29/224 (12%)

Query: 48  ELMAMQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLG 106
            L    + TGETAL+++A  +  D    LL+   D  I   +        H A      G
Sbjct: 48  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQG 104

Query: 107 IAKELVS-----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKN 159
           + + L+      +      +     T+PL  AA      ++  +++  ADV+    V   
Sbjct: 105 VFQILIRNRATDL-----DARMHDGTTPLILAARLAVEGMLEDLINSHADVN---AVDDL 156

Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
           GK+ALH AA    ++    L+        +++ + +T L +A +       + +L   A+
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN 215

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQ 261
               +  D        IA  +    IV LL           ++ 
Sbjct: 216 ---RDITDHMDRLPRDIAQERMHHDIVRLLDLEHH----HHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.0 bits (175), Expect = 5e-14
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 187 VTIKDKKGQTALHMAV-------------KGQCPSVVEYILS--ADHLILNERDKKGNTA 231
           V ++   G T L +A              +   P+V+   +   A   + N+ D+ G TA
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS--LHNQTDRTGETA 60

Query: 232 VHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
           +H+A R  R      LL   S D N  +N   T +  A  +        + + L    A 
Sbjct: 61  LHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAA--VSADA--QGVFQILIRNRAT 115

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (303), Expect = 6e-32
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 12/169 (7%)

Query: 97  HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTR 154
               ++G+    +  +          D    SPL+ A  +    VV  ++   A ++   
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
              +   T LH AA +G  +IV  L+    +I    ++ G   LH A       V E ++
Sbjct: 70  ---RGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV 125

Query: 215 S--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQ 261
           +  A    ++  +K G   V  A    R  +          ++N I  +
Sbjct: 126 ANGAL---VSICNKYGEMPVDKAKAPLRELLRERAEKM-GQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  111 bits (280), Expect = 8e-29
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 129 PLYSAAVQDHLDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
            +++   + +   V   LD    D++       +G + LH A R G   +V  LI R   
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGD---DHGFSPLHWACREGRSAVVEMLIMRGAR 64

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQI 243
           I  + ++   T LH+A       +V+ +L   AD   +N  ++ GN  +H A    + Q+
Sbjct: 65  I-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQV 120

Query: 244 VSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
              L++     V+  N   E  +D A           ++E   + G 
Sbjct: 121 AEDLVAN-GALVSICNKYGEMPVDKAK--APLR--ELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
                 + T  R G    V   +D     +   D  G + LH A +    +VVE ++   
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           A    +N  ++  +T +H+A       IV  LL Y   D+NA+N      +  A    +G
Sbjct: 63  AR---INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYA--CFWG 116

Query: 276 DSTLEIKEALAEAGA 290
               ++ E L   GA
Sbjct: 117 Q--DQVAEDLVANGA 129

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 191 DKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
             +    +    +      V   L      LN+ D  G + +H A R+ R  +V +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 251 TSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
               +N +N   +T + LA    +G    +I + L +  A
Sbjct: 62  -GARINVMNRGDDTPLHLA--ASHGH--RDIVQKLLQYKA 96

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.4 bits (127), Expect = 4e-08
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 45/150 (30%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
            N   +T L+++A++  +DI   LL++  D+  V        N   H A   G   +A++
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE----HGNVPLHYACFWGQDQVAED 123

Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170
           LV+                        +         A VS   I  K G+  +  A   
Sbjct: 124 LVA------------------------N--------GALVS---ICNKYGEMPVDKAKAP 148

Query: 171 GLINIVTALIDR--DPEIVTIKDK--KGQT 196
               +         +   +  KD   KG T
Sbjct: 149 LRELLRERAEKMGQNLNRIPYKDTFWKGTT 178

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (300), Expect = 1e-31
 Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 13/169 (7%)

Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCT 153
            H  A +G +      +     +    D    +PL  AA    + VV  +L   AD    
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-- 63

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
            ++ K  ++AL  A   G  +IV  L+D   + V   D  G T L  AV G     V+ +
Sbjct: 64  -LLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 214 LS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
           L   AD          G  ++ +A       +  ++ S+  + +     
Sbjct: 122 LESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  111 bits (281), Expect = 4e-29
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 16/171 (9%)

Query: 125 SNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
           +N+  ++  A Q  +  + T ++    ++      + G T L  AA +G I +V  L+  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCR 240
             +   +  K  ++AL +A       +V+ +L    D   +NE D  G T +  A     
Sbjct: 59  GADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNH 114

Query: 241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
            + V +LL   + D     +    +MDLA  +  G     +++ +     K
Sbjct: 115 VKCVKMLLESGA-DPTIETDSGYNSMDLA--VALGY--RSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  101 bits (255), Expect = 2e-25
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 57  GETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS-- 113
              +++  AA       +  ++    +                AA  G + + + L+   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 114 --IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAAR 169
                   +       S L  A  + + D+V  +LD   DV+       NG T L  A  
Sbjct: 60  ADP-----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLYAVH 111

Query: 170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKK 227
              +  V  L++   +  TI+   G  ++ +AV     SV + I S       L +  K+
Sbjct: 112 GNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLLK---LLQNIKE 167

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  106 bits (267), Expect = 2e-26
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 29/186 (15%)

Query: 128 SPLYSAAVQDHLDVVNTIL---DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP 184
           SPL  AA ++ +  ++ +L     +V         G+TALH AA Y  +     L++  P
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 185 EI----VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKK----------- 227
           E+    +T +  +GQTALH+AV  Q  ++V  +L+  A    ++ R              
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGAS---VSARATGSVFHYRPHNLI 118

Query: 228 --GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEAL 285
             G   +  A      +IV LL+ +   D+ A ++   T + +           ++   L
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLL 177

Query: 286 AEAGAK 291
                 
Sbjct: 178 LSYDGG 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  116 bits (293), Expect = 2e-30
 Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 22/205 (10%)

Query: 51  AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNT-FHVAAKKGHLGIAK 109
           +  +  GE    I    +             ++ ++    S   T   VA   G      
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQN---------LDFLRNYRDSYNRTPLMVACMLGMENAID 52

Query: 110 ELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTA 167
           +LV  + +L +  D   ++ L  A   + L +   +L   ++V+       +GKT L  +
Sbjct: 53  KLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---TKDFSGKTPLMWS 108

Query: 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERD 225
             +G   +   L++    +   ++ +G+T L +A K     +V+ +L   AD   ++ RD
Sbjct: 109 IIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARD 164

Query: 226 KKGNTAVHIATRKCRPQIVSLLLSY 250
             G TA   A    R +++ +    
Sbjct: 165 LTGLTAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  112 bits (282), Expect = 7e-29
 Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 19/177 (10%)

Query: 97  HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTR 154
            +  +K        L +         DS N +PL  A +    + ++ +++    +    
Sbjct: 13  KIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENFDKLE--- 62

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
                G TAL  A +   + I   L+ +   +   KD  G+T L  ++      +  ++L
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLL 121

Query: 215 S--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
              A+   +N+R+ +G T + +A++  R +IV  LL     D++A +    TA   A
Sbjct: 122 EHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASA 174

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  114 bits (289), Expect = 4e-30
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 21/175 (12%)

Query: 85  VKIRSRSDMNT-FHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHL 139
                 SD+      AA+ G     + L++    +      + D+S  +PL+ AA   HL
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMANGADV-----NAEDASGWTPLHLAAFNGHL 60

Query: 140 DVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA 197
           ++V  +L   ADV+    V   G T L  AA +G + IV  L+    ++    D +G T 
Sbjct: 61  EIVEVLLKNGADVN---AVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTP 116

Query: 198 LHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
           LH+A       +VE +L   AD   +N +DK G TA  I+       +  +L   
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (270), Expect = 2e-27
 Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 126 NTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRD 183
               L  AA     D V  ++   ADV+       +G T LH AA  G + IV  L+   
Sbjct: 15  GK-KLLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 184 PEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRP 241
            ++    D  G T L +A       +VE +L   AD   +N  D +G+T +H+A      
Sbjct: 71  ADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHL 126

Query: 242 QIVSLLLSYTSIDVNAINNQRETAMDLA 269
           +IV +LL     DVNA +   +TA D++
Sbjct: 127 EIVEVLLKN-GADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.4 bits (231), Expect = 4e-22
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 57  GETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW 115
               L  +A     D    L+    DV        S     H+AA  GHL I + L+   
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLI 173
            ++     +  T PL  AA+  HL++V  +L   ADV+        G T LH AA +G +
Sbjct: 71  ADVNAVDHAGMT-PLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHTPLHLAAMFGHL 126

Query: 174 NIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
            IV  L+    ++   +DK G+TA  +++      + E +   +
Sbjct: 127 EIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 66.6 bits (164), Expect = 4e-13
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 185 EIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQ 242
                        L  A +      V  +++  AD   +N  D  G T +H+A      +
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLE 61

Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           IV +LL     DVNA+++   T + LA    +G   LEI E L + GA
Sbjct: 62  IVEVLLKN-GADVNAVDHAGMTPLRLA--ALFGH--LEIVEVLLKNGA 104

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  116 bits (293), Expect = 2e-29
 Identities = 41/250 (16%), Positives = 78/250 (31%), Gaps = 43/250 (17%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
            +  G +A Y + A+N   +   LL       ++      +     H AA      I K 
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKIVKI 80

Query: 111 LVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNG-KTA 163
           L+              D    + LY A    ++  V   +     +       K G KT+
Sbjct: 81  LLFSGLDD-----SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM---FYGKTGWKTS 132

Query: 164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLIL 221
            + A     ++IV+  +   P   T       + +H+ +K     ++  +L         
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMILLLDYMTS---T 187

Query: 222 NERDKKGNTAV-HIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLE 280
           N  +         +A      +++  L  Y  I++ + N   E            D   E
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSANL--ENV-------LLDD--AE 235

Query: 281 IKEALAEAGA 290
           I + + E   
Sbjct: 236 IAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  114 bits (289), Expect = 7e-29
 Identities = 46/243 (18%), Positives = 81/243 (33%), Gaps = 33/243 (13%)

Query: 57  GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
           G     I+   +        L   D            +  + A    ++ +   L++   
Sbjct: 1   GMDLSRINTWKS--KQLKSFLSSKDTFK---ADVHGHSASYYAIADNNVRLVCTLLN--- 52

Query: 117 ELCKSCD---SSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
                       N  PL+ AA  +   +V  +L    D S        G TAL+ A   G
Sbjct: 53  ---AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSG 106

Query: 172 LINIVTALIDRDPEIVTIKDKKG-QTALHMAVKGQCPSVVEYILS--ADHLILNERDKKG 228
            +  V   + ++  +     K G +T+ + AV     S+V Y LS               
Sbjct: 107 NMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----TFDLAIL 161

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRET-AMDLADKLQYGDSTLEIKEALAE 287
            + +HI  +     ++ LLL Y     N  N+      + LA  +   D  +E+ +AL +
Sbjct: 162 LSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLA--IDNKD--IEMLQALFK 216

Query: 288 AGA 290
              
Sbjct: 217 YDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  102 bits (256), Expect = 2e-24
 Identities = 29/214 (13%), Positives = 61/214 (28%), Gaps = 26/214 (12%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
            +D G TALY +  +         +K    +       ++   T F+ A     + I   
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM---FYGKTGWKTSFYHAVMLNDVSIVSY 147

Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKT-ALHTA 167
            +S  P       +   S ++      H+D++  +LD     +             +  A
Sbjct: 148 FLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTN---NSLLFIPDIKLA 202

Query: 168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERD 225
                I ++ AL   D  I         +A    V      + + I+    +        
Sbjct: 203 IDNKDIEMLQALFKYDINI--------YSANLENVLLDDAEIAKMIIEKHVE---YKSDS 251

Query: 226 KKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN 259
              +  +    +       +  L    ++    N
Sbjct: 252 YTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  113 bits (286), Expect = 6e-29
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 14/200 (7%)

Query: 97  HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTR 154
               +        E ++    +    +    + L  ++++   D+V  I+    D S   
Sbjct: 10  PPGKRTNLRKTGSERIAH--GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS--- 64

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
           +    G TALH A   G   IV  L+     +    D  G T LH A       V ++++
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123

Query: 215 S--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKL 272
              A    +   D +          +   Q    L       +  +N     A  L D  
Sbjct: 124 ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYA--LWDYE 180

Query: 273 QYGDSTLEIKEALAEAGAKH 292
              D  L +KE        H
Sbjct: 181 PQNDDELPMKEG-DCMTIIH 199

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (280), Expect = 4e-28
 Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 16/174 (9%)

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
           + +    L      +     +  +     V             L  ++  G  ++V  +I
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN----PLPLALLLDSSLEGEFDLVQRII 57

Query: 181 DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRK 238
               +  ++ + +G TALH AV      +V++++    +   +N  D  G T +H A   
Sbjct: 58  YEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASC 113

Query: 239 CRPQIVSLLLSYTSIDVNAINNQ-RETAMDLADKLQYGDSTLEIKEALAEAGAK 291
              Q+   L+      V A+     +TA D  ++++ G    +  + L     K
Sbjct: 114 NNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEG--YTQCSQFLYGVQEK 164

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  108 bits (271), Expect = 7e-27
 Identities = 25/189 (13%), Positives = 64/189 (33%), Gaps = 14/189 (7%)

Query: 55  DTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
            TG+ +L      N +   S  +     V+   +     +     ++ +G   + + ++ 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL----PLALLLDSSLEGEFDLVQRIIY 58

Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
              +     D   T  L++A    H ++V  ++    +V+       +G T LH AA   
Sbjct: 59  EVDDPSLPNDEGIT-ALHNAVCAGHTEIVKFLVQFGVNVNAAD---SDGWTPLHCAASCN 114

Query: 172 LINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGN 229
            + +   L++       +T  D +        ++       +++      +    +K   
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVI 173

Query: 230 TAVHIATRK 238
            A+     +
Sbjct: 174 YALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 31/185 (16%), Positives = 50/185 (27%), Gaps = 41/185 (22%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
            ND G TAL+                                    A   GH  I K LV
Sbjct: 66  PNDEGITALHN-----------------------------------AVCAGHTEIVKFLV 90

Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARY 170
                +    DS   +PL+ AA  +++ V   +++  A V                    
Sbjct: 91  QFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 149

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNT 230
           G       L     ++  I +K    AL          +   +   D + +  R+ +   
Sbjct: 150 GYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEI 206

Query: 231 AVHIA 235
               A
Sbjct: 207 EWWWA 211

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (279), Expect = 6e-29
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
            L  AA     D V  ++   A  +        G + LH AA+YG  +    L+      
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
              + K  +T LHMA      ++VE +L   AD   +N +D    TA+H AT     ++V
Sbjct: 61  -DARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVV 116

Query: 245 SLLLSYTSIDVNAINNQRETAMDLA 269
            LL+ Y   DV+  +   +TA D++
Sbjct: 117 ELLIKY-GADVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  108 bits (272), Expect = 6e-28
 Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 92  DMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--A 148
           D+      AA+ G     + L++         D   TSPL+ AA   H      +L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 149 DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS 208
                    K  +T LH AA  G  NIV  L+    ++   KD    TALH A +     
Sbjct: 59  SRD---ARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQE 114

Query: 209 VVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
           VVE ++   AD   ++ + K   TA  I+       +  +L
Sbjct: 115 VVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 71.6 bits (177), Expect = 4e-15
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 70/204 (34%)

Query: 18  AVRSGDLETLKNIID---NLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFS 74
           A R+G  + ++ ++      T D                   G + L++           
Sbjct: 9   AARAGQDDEVRILMANGAPFTTD-----------------WLGTSPLHL----------- 40

Query: 75  CLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPL 130
                                   AA+ GH    + L+            +    + +PL
Sbjct: 41  ------------------------AAQYGHFSTTEVLLRAGVSR-----DARTKVDRTPL 71

Query: 131 YSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
           + AA + H ++V  +L   ADV+          TALH A  +    +V  LI    ++  
Sbjct: 72  HMAASEGHANIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYGADV-H 127

Query: 189 IKDKKGQTALHMAVKGQCPSVVEY 212
            + K  +TA  +++      + E 
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEI 151

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (277), Expect = 1e-28
 Identities = 30/159 (18%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 94  NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVS 151
           +    AA +G +   + L+        + +    + L          +   +L   A  +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE 211
              +   +G + +H AAR G ++ +  L++   ++  + D  G   +H+AV+    +VV 
Sbjct: 63  ---VQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS 118

Query: 212 YILS-ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
           ++ + +D   L+ RD +G T + +A ++    +V +L  
Sbjct: 119 FLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  102 bits (257), Expect = 8e-26
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 129 PLYSAAVQDHLDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
            L  AA +  +  V  +L              + GKTAL     +G   I   L+ +   
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALN---RFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQI 243
              ++D  G + +H A +      ++ ++   AD   +N  D  G   +H+A ++    +
Sbjct: 61  P-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAV 116

Query: 244 VSLLLSYTSIDVNAINNQRETAMDLA 269
           VS L +    D++  + +  T ++LA
Sbjct: 117 VSFLAA--ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 1e-20
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--AD 217
               L  AA  G +  V  L+ R+       ++ G+TAL + + G    +   +L   A 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGAS 60

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
               N +D  G + VH A R      + +L+ +   DVN  +      + LA
Sbjct: 61  ---PNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.7 bits (177), Expect = 4e-15
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 56/174 (32%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
            N  G+TAL +                                       G   IA EL+
Sbjct: 32  LNRFGKTALQV-MMF-----------------------------------GSTAIALELL 55

Query: 113 S----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHT 166
                         D+S TSP++ AA    LD +  +++  ADV+   +    G   +H 
Sbjct: 56  KQGASP-----NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHL 107

Query: 167 AARYGLINIVTALIDR-DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
           A + G   +V+ L    D      +D +G T L +A++     +V+ +    H+
Sbjct: 108 AVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDILQG--HM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 193 KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTS 252
           +    L  A        V  +L  + +  +  ++ G TA+ +        I   LL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQ-G 58

Query: 253 IDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
              N  +    + +  A   + G   L+  + L E GA
Sbjct: 59  ASPNVQDTSGTSPVHDA--ARTGF--LDTLKVLVEHGA 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  108 bits (272), Expect = 7e-28
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
            L SAA +  L+ + ++L    +V+        G+TAL    + G   I   L+ R    
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQ-VMKLGNPEIARRLLLRGANP 63

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
             +KD+ G   +H A +      ++ +L   AD   +N  D +GN  +H+A ++   ++V
Sbjct: 64  -DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVV 119

Query: 245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
             L+ +T+ +V   N++ +TA DLA    YG    E+   +   GA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA--RLYGR--NEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  108 bits (272), Expect = 7e-28
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 16/160 (10%)

Query: 97  HVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADV 150
             AA +G L     L+     +      + +    + L       + ++   +L   A+ 
Sbjct: 10  ASAAARGDLEQLTSLLQNNVNV-----NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP 63

Query: 151 SCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV 210
               +  + G   +H AAR G ++ +  L++   ++  I+D +G   LH+A K     VV
Sbjct: 64  D---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVV 119

Query: 211 EYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
           E+++      +  R+ KG+TA  +A    R ++VSL+ + 
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.8 bits (237), Expect = 4e-23
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
                L +AA  G +  +T+L+  +  +   ++  G+TAL +   G  P +   +L   A
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKLG-NPEIARRLLLRGA 61

Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276
           +    + +D+ G   +H A R      +  LL +   DVN  +N+    + LA   + G 
Sbjct: 62  N---PDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLA--AKEGH 115

Query: 277 STLEIKEALAEAGA 290
             L + E L +  A
Sbjct: 116 --LRVVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.4 bits (192), Expect = 6e-17
 Identities = 37/165 (22%), Positives = 57/165 (34%), Gaps = 42/165 (25%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
           QN  G TAL +                                     K G+  IA+ L+
Sbjct: 34  QNGFGRTALQV------------------------------------MKLGNPEIARRLL 57

Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARY 170
                      +     ++ AA    LD + T+L+  ADV+   I    G   LH AA+ 
Sbjct: 58  LRGANPDLKDRTGFA-VIHDAARAGFLDTLQTLLEFQADVN---IEDNEGNLPLHLAAKE 113

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215
           G + +V  L+      V  ++ KG TA  +A       VV  + +
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  110 bits (277), Expect = 1e-27
 Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 57/275 (20%)

Query: 16  FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQ---DI 72
           FS V  G  E L  +++ L  +      S  +E       TG+T L  +  N        
Sbjct: 7   FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-----GSTGKTCLMKAVLNLQDGVNAC 61

Query: 73  FSCLLKF-CDVEIVKIRSRSDMNT--------FHVAAKKGHLGIAKELVS---------- 113
              LL+   D    K    +             H+A +K  L   K LV           
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 114 --IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD-----ADVSCTRIVRKNGKTALHT 166
              + +   +C      PL  AA     DVV  +L+     A +         G T LH 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL---EATDSLGNTVLHA 178

Query: 167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDK 226
                                   +    +AL + +      +   +     L     + 
Sbjct: 179 LVMIA------------------DNSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNH 219

Query: 227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQ 261
           +G T + +A ++ + +I   +L        A ++ 
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHILQR-EFSGAAAHHH 253

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (270), Expect = 1e-27
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 18/173 (10%)

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGLINIVTAL 179
           +S     L  AA    ++ V  +      +    R +     T LH AA Y  +++V  L
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATR 237
           +    ++   KDK G   LH A       V E ++   A    +N  D    T +H A  
Sbjct: 62  LQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAA 117

Query: 238 KCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           K + +I  LLL +   D    N    T +DL    + GD   +I++ L    A
Sbjct: 118 KGKYEICKLLLQH-GADPTKKNRDGNTPLDLV---KDGD--TDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  105 bits (264), Expect = 9e-27
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 12/158 (7%)

Query: 97  HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTR 154
             AAK G +   K+L ++    C+  +   ++PL+ AA  + + VV  +L   ADV    
Sbjct: 13  LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK- 71

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
              K G   LH A  YG   +   L+     +  + D    T LH A       + + +L
Sbjct: 72  --DKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLL 128

Query: 215 S--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
              AD     ++++ GNT + +        I  LL   
Sbjct: 129 QHGAD---PTKKNRDGNTPLDLVKDGDT-DIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 190 KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
            + +    L  A K      V+ + +   +   + + + +T +H A    R  +V  LL 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 250 YTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           +   DV+A +      +  A    YG    E+ E L + GA
Sbjct: 64  H-GADVHAKDKGGLVPLHNA--CSYGH--YEVAELLVKHGA 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  106 bits (268), Expect = 2e-26
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 34/218 (15%)

Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL-DADVSCTR 154
           + +  K GH         I  ++     S   +P ++AA +     ++ +L D DV    
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDVD--- 71

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKK-GQTALHMAVKGQCPSVVEYI 213
            V +NG+TAL   A  G    V  L +   ++   +D + G TALHMA     P VVE +
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEAL 130

Query: 214 LS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY---------TSIDVNAINNQR 262
           +   AD   +   D++G TA+ +A    +       + +          ++    +    
Sbjct: 131 VELGAD---IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYA 187

Query: 263 ETAMDLADKLQYGDSTL---------EIKEALAEAGAK 291
           E   ++ +K   G             + +       A+
Sbjct: 188 EVD-EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.4 bits (233), Expect = 1e-21
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 34/209 (16%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
               ET  + +A    +   S LL+  DV+       +        A  G     + L  
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 114 IWPEL-CKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARY 170
              +L  +      T  L+ AA     +VV  +++  AD+    +  + G TAL  A   
Sbjct: 99  AGADLDHRDMRGGLT-ALHMAAGYVRPEVVEALVELGADIE---VEDERGLTALELAREI 154

Query: 171 GLINIVTALIDRDPEI---------------------VTIKDKKGQTALHMAVKGQCPSV 209
                    +     I                     +  K  KG+   ++         
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 210 VEYILSADHLILNERDKKGNTAVHIATRK 238
                         +D +    +  A  +
Sbjct: 215 EWVKGVHVAED-VAKDYE--DGLEYAVAE 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-AD 217
            G        + G             ++      + +T    A +      +  +L   D
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRD 69

Query: 218 HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN-NQRETAMDLADKLQYGD 276
              ++  D+ G TA+         + V LL      D++  +     TA+ +A    Y  
Sbjct: 70  ---VDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA--AGYVR 123

Query: 277 STLEIKEALAEAGA 290
              E+ EAL E GA
Sbjct: 124 --PEVVEALVELGA 135

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 28/178 (15%), Positives = 46/178 (25%), Gaps = 38/178 (21%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
            ++ G TAL   A          L +   D++    R      T  H+AA      + + 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDH---RDMRGGLTALHMAAGYVRPEVVEA 129

Query: 111 LVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIV-------- 156
           LV     I     +  D    + L  A            +     +   +++        
Sbjct: 130 LVELGADI-----EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184

Query: 157 -----------RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVK 203
                      R  GK   +        +          E V  KD +    L  AV 
Sbjct: 185 EYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV-AKDYE--DGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 30/131 (22%)

Query: 160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
           G+      +R                       +G     +  K                
Sbjct: 1   GEVNKIIGSR--------------------TAGEGAMEYLIEWKDGHSPSWVPSSYIA-- 38

Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
              +   +  T    A RK   Q +S LL     DV+A++    TA+        G    
Sbjct: 39  --ADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFV--AGLGS--D 90

Query: 280 EIKEALAEAGA 290
           +    LAEAGA
Sbjct: 91  KCVRLLAEAGA 101

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (262), Expect = 3e-26
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 15/159 (9%)

Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL-DADVSCTR 154
           + +  K GH         I  ++     S   +P ++AA +     ++ +L D DV    
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDVDA-- 71

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKK-GQTALHMAVKGQCPSVVEYI 213
            V +NG+TAL   A  G    V  L +   ++   +D + G TALHMA     P VVE +
Sbjct: 72  -VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 214 LS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
           +   AD   +   D++G TA+ +A    +       + +
Sbjct: 130 VELGAD---IEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  102 bits (256), Expect = 2e-25
 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI-DRDPE 185
                    H           ADV          +T   TAAR      ++ L+ DRD +
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVV------SEYETPWWTAARKADEQALSQLLEDRDVD 70

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKK-GNTAVHIATRKCRPQ 242
                D+ G+TAL           V  +    AD   L+ RD + G TA+H+A    RP+
Sbjct: 71  A---VDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPE 124

Query: 243 IVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
           +V  L+     D+   + +  TA++LA   +        K    + G +
Sbjct: 125 VVEALVEL-GADIEVEDERGLTALELA--REILK--TTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.4 bits (202), Expect = 3e-18
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 14/135 (10%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-A 216
             G        + G             ++      + +T    A +      +  +L   
Sbjct: 12  GEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDR 67

Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN-NQRETAMDLADKLQYG 275
           D   ++  D+ G TA+         + V LL      D++  +     TA+ +A    Y 
Sbjct: 68  D---VDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA--AGYV 121

Query: 276 DSTLEIKEALAEAGA 290
               E+ EAL E GA
Sbjct: 122 R--PEVVEALVELGA 134

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.9 bits (193), Expect = 6e-17
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 42/165 (25%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
               ET  + +A    +   S LL+  DV+ V                            
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDRDVDAV---------------------------- 72

Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
                    D +  + L   A       V  + +  AD+       + G TALH AA Y 
Sbjct: 73  ---------DENGRTALLFVAGLGSDKCVRLLAEAGADLDHR--DMRGGLTALHMAAGYV 121

Query: 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
              +V AL++   +I  ++D++G TAL +A +    +     +  
Sbjct: 122 RPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 10/101 (9%)

Query: 190 KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
              +G     +  K                   +   +  T    A RK   Q +S LL 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIA----ADVVSEYETPWWTAARKADEQALSQLLE 65

Query: 250 YTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
               DV+A++    TA+        G    +    LAEAGA
Sbjct: 66  --DRDVDAVDENGRTALLFV--AGLGS--DKCVRLLAEAGA 100

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 25/166 (15%), Positives = 44/166 (26%), Gaps = 54/166 (32%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A R  D + L  ++++   D                ++ G TAL                
Sbjct: 51  AARKADEQALSQLLEDRDVDA--------------VDENGRTALLF-------------- 82

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
                                 A  G     + L     +L         + L+ AA   
Sbjct: 83  ---------------------VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 138 HLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALID 181
             +VV  +++  AD+    +  + G TAL  A            + 
Sbjct: 122 RPEVVEALVELGADIE---VEDERGLTALELAREILKTTPKGNPMQ 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  106 bits (267), Expect = 4e-26
 Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 61/268 (22%)

Query: 16  FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDI 72
           F AV   + + L++++  L +         +++      +TG+T L  +  N      D 
Sbjct: 18  FDAVAQSNCQELESLLPFLQR-----SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 73  FSCLLKF-CDVEIVKIRSRSDMNT--------FHVAAKKGHLGIAKELVS---------- 113
            + LL      + +K    +             H+A ++ ++ +   LV           
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 114 ---IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD-----ADVSCTRIVRKNGKTALH 165
                    +        PL  AA  + L +V  +L      AD+         G T LH
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI---SARDSVGNTVLH 189

Query: 166 TAARYG---------------LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV 210
                                 I I+ A +    ++  I ++KG T L +A       V+
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249

Query: 211 EYILSADHLILNERDKKGNTAVHIATRK 238
            YIL        +R+       H A   
Sbjct: 250 AYIL--------QREIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 37/255 (14%), Positives = 72/255 (28%), Gaps = 60/255 (23%)

Query: 90  RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS-------PLYSAAV---QDHL 139
             D  +   A  + +    + L+       K    S           L  A +       
Sbjct: 11  LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70

Query: 140 DVVNTILDADVSCTRIVR----------KNGKTALHTAARYGLINIVTALIDR------- 182
           D +  +LD       + +            G+TALH A     + +VT L++        
Sbjct: 71  DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA 130

Query: 183 ------DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-----ADHLILNERDKKGNTA 231
                            G+  L +A      ++V+++L      AD   ++ RD  GNT 
Sbjct: 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD---ISARDSVGNTV 187

Query: 232 VHIATRKCRPQIVSLLLSYTSID---------------VNAINNQRETAMDLADKLQYGD 276
           +H         + +     +  +                   N +  T + LA     G 
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS--SGK 245

Query: 277 STLEIKEALAEAGAK 291
             + +   + +    
Sbjct: 246 --IGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 5e-12
 Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 31/167 (18%)

Query: 157 RKNGKTALHTAARYG-------LINIVTALIDRDPEIVTIKDKKGQTALHMAV---KGQC 206
           R   + ++  A           L+  +     R  +      + G+T L  A+       
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 207 PSVVEYILSADHLI----------LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN 256
              +  +L                  +   KG TA+HIA  +    +V+LL+     DV 
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQ 128

Query: 257 AINNQRETAMDLADKLQYGDST----------LEIKEALAEAGAKHA 293
           A  N             Y              L I + L +   + A
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 33/175 (18%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPD-GSSLVSELMAMQNDTGETALYISAANNFQDIFSCL 76
           A+   ++  +  +++N    +A   G              GE  L ++A  N   I   L
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 77  LK----FCDVEIVKIRSRSDMNT-FHVAAKKGHLGIA---------KELVSIWPELCKSC 122
           L+      D+        S  NT  H   +     +           E++ +  +L  + 
Sbjct: 168 LQNSWQPADISARD----SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 123 DSSNT------SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171
                      +PL  AA    + V+  IL  +         +     H AA + 
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQRE--------IHEPECRHAAAHHH 270

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  103 bits (259), Expect = 6e-26
 Identities = 35/190 (18%), Positives = 61/190 (32%), Gaps = 25/190 (13%)

Query: 89  SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT--SPLYSAAVQDHLDVVNTIL 146
           + S+  T   AA  G      EL     E  +S   SN     L +   +    +   ++
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 147 D--ADVSCTRIVRKNGKTALHTAARYGLINIVTA------LIDR--DPEIVTIKDKKGQT 196
           +  AD+       K G T      + G  +I          +++  D   +T   K  + 
Sbjct: 63  NKGADIKSRT---KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKI 116

Query: 197 ALHMAVKGQCPSVVEYILSADHLI------LNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
            +   +        E I     +       L  +DK G TA+    R  +P  + ++  Y
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 251 TSIDVNAINN 260
                N   N
Sbjct: 177 IK-KYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 98.2 bits (245), Expect = 5e-24
 Identities = 20/182 (10%), Positives = 50/182 (27%), Gaps = 22/182 (12%)

Query: 125 SNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
           S    + +AA+    +    + +   +   + +        L          I   LI++
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 183 --DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI-----LNERDKKGNTAVHIA 235
             D +    + K+G T      +G    +          +     +    K     V   
Sbjct: 65  GADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 236 TRKC------RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAG 289
                        +  L+ S + + +   +    TA++   + Q         + + +  
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK----PIALKMMEDYI 177

Query: 290 AK 291
            K
Sbjct: 178 KK 179

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.8 bits (245), Expect = 1e-24
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
           PL+ AA   HL+VV  +L+  ADV+      KNG+T LH AAR G + +V  L++   ++
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
              KDK G+T LH+A +     VV+ +L   AD   +N +DK G T +H+A R    ++V
Sbjct: 62  -NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVV 117

Query: 245 SLLLSY 250
            LLL  
Sbjct: 118 KLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.5 bits (239), Expect = 9e-24
 Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 11/134 (8%)

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
           NG+T LH AAR G + +V  L++   ++   KDK G+T LH+A +     VV+ +L   A
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276
           D   +N +DK G T +H+A R    ++V LLL     DVNA +    T + LA   + G 
Sbjct: 60  D---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLA--ARNGH 113

Query: 277 STLEIKEALAEAGA 290
             LE+ + L EAGA
Sbjct: 114 --LEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.8 bits (180), Expect = 8e-16
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 40/161 (24%)

Query: 57  GETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW 115
           G T L+++A N   ++   LL+   DV     + ++     H+AA+ GHL + K L+   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEA- 57

Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
                                           ADV+      KNG+T LH AAR G + +
Sbjct: 58  -------------------------------GADVNAK---DKNGRTPLHLAARNGHLEV 83

Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
           V  L++   ++   KDK G+T LH+A +     VV+ +L A
Sbjct: 84  VKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
             G+T LH A+  G I  V  L+    +   +KD  G T LH A       VVE +L   
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           A    +N    + ++ +H A +     IV LLLSY     NA+N      +D  D     
Sbjct: 67  AL---VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTD--DES 120

Query: 276 DSTLEIKEALAEAGAKHA 293
                +     +  +  A
Sbjct: 121 M--KSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 91.3 bits (228), Expect = 3e-22
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
            L+ A+++  +  V  +L   +D +   +    G T LH A  +G + +V  L+      
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQHKAL- 68

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
           V     +  + LH A K     +V+ +LS  A     N  +  G   V     +    ++
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLL 125

Query: 245 SLLLS 249
            L   
Sbjct: 126 LLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 4e-17
 Identities = 32/164 (19%), Positives = 51/164 (31%), Gaps = 42/164 (25%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS 113
           N  GET L+I                                   A+ KG +   + L+ 
Sbjct: 7   NHRGETLLHI-----------------------------------ASIKGDIPSVEYLLQ 31

Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYG 171
              +      +  T PL+ A    HL VV  +L   A V+ T        + LH AA+ G
Sbjct: 32  NGSDPNVKDHAGWT-PLHEACNHGHLKVVELLLQHKALVNTT---GYQNDSPLHDAAKNG 87

Query: 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215
            ++IV  L+          +  G   +         S++     
Sbjct: 88  HVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 10/103 (9%)

Query: 190 KDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
            + +G+T LH+A        VEY+L   +D    N +D  G T +H A      ++V LL
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 248 LSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           L +    VN    Q ++ +  A   + G   ++I + L   GA
Sbjct: 63  LQH-KALVNTTGYQNDSPLHDA--AKNGH--VDIVKLLLSYGA 100

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 96.3 bits (241), Expect = 6e-24
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 126 NTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRD 183
               L  AA     D V  ++   ADV+      + G T L+ A  +G + IV  L+   
Sbjct: 15  GK-KLLEAARAGQDDEVRILMANGADVN---AKDEYGLTPLYLATAHGHLEIVEVLLKNG 70

Query: 184 PEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRP 241
            ++    D  G T LH+A       + E +L   AD   +N +DK G TA  I+      
Sbjct: 71  ADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNE 126

Query: 242 QIVSLLLSY 250
            +  +L   
Sbjct: 127 DLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 91.3 bits (228), Expect = 3e-22
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--A 216
           +    L  AAR G  + V  L+    ++   KD+ G T L++A       +VE +L   A
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           D   +N  D  G T +H+A      +I  +LL +   DVNA +   +TA D++
Sbjct: 72  D---VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.0 bits (196), Expect = 9e-18
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 91  SDMNT-FHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTI 145
           SD+      AA+ G     + L++    +      + D    +PLY A    HL++V  +
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADV-----NAKDEYGLTPLYLATAHGHLEIVEVL 66

Query: 146 LD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVK 203
           L   ADV+    V   G T LH AA  G + I   L+    ++   +DK G+TA  +++ 
Sbjct: 67  LKNGADVN---AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIG 122

Query: 204 GQCPSVVEYILSAD 217
                + E +   +
Sbjct: 123 NGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.8 bits (110), Expect = 3e-06
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 41/130 (31%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
           +++ G T LY+                                   A   GHL I + L+
Sbjct: 43  KDEYGLTPLYL-----------------------------------ATAHGHLEIVEVLL 67

Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARY 170
               ++        T PL+ AA   HL++   +L   ADV+      K GKTA   +   
Sbjct: 68  KNGADVNAVDAIGFT-PLHLAAFIGHLEIAEVLLKHGADVN---AQDKFGKTAFDISIGN 123

Query: 171 GLINIVTALI 180
           G  ++   L 
Sbjct: 124 GNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           + H   +  D      +  A R  +   V +L++    DVNA +    T + LA    +G
Sbjct: 4   SHHHHHHGSD--LGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLA--TAHG 58

Query: 276 DSTLEIKEALAEAGA 290
              LEI E L + GA
Sbjct: 59  H--LEIVEVLLKNGA 71

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
           K+G T LH AA+ G    V  L+ +  ++   + K G T LH+A K     +V+ +L+  
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETA 265
           AD   +N R K GNT  H+A +    +IV LL +    DVNA +      
Sbjct: 66  AD---VNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 85.1 bits (212), Expect = 3e-20
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 11/109 (10%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
           PL++AA   H + V  +L   ADV+      K+G T LH AA+ G   IV  L+ +  ++
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVH 233
              + K G T  H+A K     +V+ + +  AD   +N R    +   H
Sbjct: 69  -NARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.8 bits (193), Expect = 1e-17
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 97  HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTR 154
           H AAK GH    K+L+S   ++  +      +PL+ AA   H ++V  +L   ADV+   
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72

Query: 155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH 199
              K+G T  H A + G   IV  L  +  ++   +        H
Sbjct: 73  ---KDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 189 IKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSL 246
              K G T LH A K      V+ +LS  AD   +N R K GNT +H+A +    +IV L
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 247 LLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           LL+    DVNA +    T   LA   + G    EI + L   GA
Sbjct: 61  LLAK-GADVNARSKDGNTPEHLA--KKNGH--HEIVKLLDAKGA 99

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.0 bits (244), Expect = 2e-23
 Identities = 48/242 (19%), Positives = 83/242 (34%), Gaps = 23/242 (9%)

Query: 54  NDTGETALYISAANNFQDIFSCLL-KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
             +      ++ +    ++   +L             +      H A   GH  I + L+
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATR---TDQDSRTALHWACSAGHTEIVEFLL 60

Query: 113 S----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA 168
                +        D +  SPL+ AA     ++V  +L         V +NG T LH AA
Sbjct: 61  QLGVPV-----NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAA 114

Query: 169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKG 228
                 I   L++        KD    TA+H A       +V  +L       N +D +G
Sbjct: 115 SKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEG 172

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA 288
           NT +H+A  + R +    L++  +  +   N + +T       LQ     L +       
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEKTP------LQVAKGGLGLILKRLAE 225

Query: 289 GA 290
           G 
Sbjct: 226 GE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 94.5 bits (235), Expect = 3e-22
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 120 KSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVT 177
           + C S N      A      ++   IL   +  + T    ++ +TALH A   G   IV 
Sbjct: 2   EGCVS-NIMICNLAYSGKLDELKERILADKSLATRTD---QDSRTALHWACSAGHTEIVE 57

Query: 178 ALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATR 237
            L+     +   KD  G + LH+A       +V+ +L     + N  ++ G T +H A  
Sbjct: 58  FLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAAS 115

Query: 238 KCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
           K R +I  +LL   + + +A ++   TAM  A         L++   L    A 
Sbjct: 116 KNRHEIAVMLLEGGA-NPDAKDHYDATAMHRAAA----KGNLKMVHILLFYKAS 164

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 39/205 (19%), Positives = 85/205 (41%), Gaps = 11/205 (5%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
            +    TAL+ + +    +I   LL+    V     +  +  +  H+AA  G   I K L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG 171
           +     +  + + +  +PL+ AA ++  ++   +L+   +          TA+H AA  G
Sbjct: 93  LVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKG 150

Query: 172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA 231
            + +V  L+        I+D +G T LH+A   +     +++++    I    +K+  T 
Sbjct: 151 NLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTP 208

Query: 232 VHIATRKCRPQIVSLLLSYTSIDVN 256
           + +A       ++   L+    + +
Sbjct: 209 LQVAKGGL--GLILKRLAE-GEEAS 230

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 98.3 bits (245), Expect = 3e-23
 Identities = 39/286 (13%), Positives = 80/286 (27%), Gaps = 77/286 (26%)

Query: 16  FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSC 75
           F  V  G  + L+ ++  L   +       +++    +  TG+T L  +  N        
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKK-----RLTDEEFREPSTGKTCLPKALLNL------- 57

Query: 76  LLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL----------CKSCDSS 125
                                      G       L+ I  +            +     
Sbjct: 58  -------------------------SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR 92

Query: 126 NTSPLYSAAVQDHLDVVNTILD--ADV-----------SCTRIVRKNGKTALHTAARYGL 172
             + L+ A  +     V  +++  ADV                    G+  L  AA    
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 173 INIVTALIDRDPEIVTI--KDKKGQTALHMAVKGQ---------CPSVVEYILS------ 215
            +IV  L +   +   +  +D +G T LH  V               + + +L       
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQ 261
            D  +    +  G + + +A +  +  I   ++     D  A ++ 
Sbjct: 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 36/209 (17%)

Query: 20  RSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLK- 78
            +G  +T+  ++D   K         ++         G+TAL+I+     +     L++ 
Sbjct: 58  SAGRNDTIPILLDIAEKTGNMR--EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115

Query: 79  -----------FCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC--KSCDSS 125
                      F   +              +AA      I   L     +    +  DS 
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 126 NTSPLYSAAVQDH---------LDVVNTIL------DADVSCTRIVRKNGKTALHTAARY 170
             + L++                 + + +L        D +   ++  +G + L  AA+ 
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALH 199
           G I I   +I R+     I D       H
Sbjct: 236 GKIGIFQHIIRRE-----IADAAAHHHHH 259

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 93.3 bits (233), Expect = 7e-23
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
            +    L TAA  G +  V  L++   +     ++ G+  + + + G    V E +L   
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMGSA-QVAELLLLHG 67

Query: 216 ADHLILNERDKKGNT-AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQY 274
           A+    N  D    T  VH A R+     + +L    +  ++  +      +DLA   + 
Sbjct: 68  AE---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-RLDVCDAWGRLPVDLA--EEQ 121

Query: 275 GDSTLEIKEALAEAGA 290
           G    +I   L  A  
Sbjct: 122 GH--RDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.5 bits (218), Expect = 9e-21
 Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALI 180
             S+ + L +AA +  ++ V  +L+  AD +    + + G+  +      G   +   L+
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 181 DR--DPEIVTIKDKKGQT-ALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIA 235
               +P      D    T  +H A +      +  +    A    L+  D  G   V +A
Sbjct: 65  LHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLA 118

Query: 236 TRKCRPQIVSLLLSY 250
             +    I   L + 
Sbjct: 119 EEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 17/127 (13%)

Query: 97  HVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADV 150
             AA +G +   ++L+            + +     P+          V   +L   A+ 
Sbjct: 17  ATAAARGQVETVRQLLEAGADP-----NALNRFGRRPIQVMM-MGSAQVAELLLLHGAEP 70

Query: 151 SCTRIVRKNGKT-ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSV 209
           +C         T  +H AAR G ++ +  L       + + D  G+  + +A +     +
Sbjct: 71  NCA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDI 126

Query: 210 VEYILSA 216
             Y+ +A
Sbjct: 127 ARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.5 bits (179), Expect = 1e-15
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL 111
              + +  L  +AA    +    LL+   D       +R       V    G   +A+ L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAAR 169
           +    E   +  ++ T P++ AA +  LD +  +    A +    +    G+  +  A  
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEE 120

Query: 170 YGLINIVTALIDR 182
            G  +I   L   
Sbjct: 121 QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
           + +        L  A        V  +L   AD    N  ++ G   + +       Q+ 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMMG-SAQVA 60

Query: 245 SLLLSYTSIDVNAINNQRETA--MDLADKLQYGDSTLEIKEALAEAGA 290
            LLL + + + N  +    T    D A   + G   L+    L  AGA
Sbjct: 61  ELLLLHGA-EPNCADPATLTRPVHDAA---REGF--LDTLVVLHRAGA 102

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 215 SADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQY 274
           S      +      +  +  A  + + + V  LL     D NA+N      + +      
Sbjct: 2   SPGI---HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVM---MM 54

Query: 275 GDSTLEIKEALAEAGA 290
           G    ++ E L   GA
Sbjct: 55  GS--AQVAELLLLHGA 68

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.0 bits (237), Expect = 2e-22
 Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 23/200 (11%)

Query: 80  CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAV 135
                 +    + +     AA  G L + ++ V              +    + L++A  
Sbjct: 9   GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-----SQPNEEGITALHNAIC 63

Query: 136 QDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKK 193
             +  +V+ ++   A+V+       +G T LH AA      I  AL+     I       
Sbjct: 64  GANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 194 GQTALHMAVKGQC--PSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
           G TA       +        Y+         +   +     A+   + +     +S    
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAE-FGDELSFREG 176

Query: 250 YTSIDVNAINNQRETAMDLA 269
             S+ V   +   ET    A
Sbjct: 177 E-SVTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 93.5 bits (233), Expect = 8e-22
 Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 34/215 (15%)

Query: 56  TGETALYISAANNFQDIFSCLLKFCDVEIVK--IRSRSDMNT--------FHVAAKKGHL 105
                L  +A               ++E+V+  ++  +D +          H A    + 
Sbjct: 20  NPLVLLLDAALTG------------ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67

Query: 106 GIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTA 163
            I   L++    +    DS   +PL+ AA  +   +   ++   A +        +G TA
Sbjct: 68  SIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATA 124

Query: 164 LHTAARY--GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLIL 221
                 Y  G  +  T L D + + + + +     AL           + +      + +
Sbjct: 125 FEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEF-GDELSFREGES-VTV 181

Query: 222 NERDKKGNTAVHIATRKCRPQIV--SLLLSYTSID 254
             RD    T    A    +   V  +    +  + 
Sbjct: 182 LRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.4 bits (181), Expect = 5e-15
 Identities = 32/225 (14%), Positives = 62/225 (27%), Gaps = 28/225 (12%)

Query: 15  FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFS 74
              A  +G+LE ++  +           +   S+     N+ G TAL+ +       I  
Sbjct: 25  LLDAALTGELEVVQQAVKE--------MND-PSQ----PNEEGITALHNAICGANYSIVD 71

Query: 75  CLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS 132
            L+    +V        S   T  H AA      I   LV     +  +  S   +    
Sbjct: 72  FLITAGANVNSPD----SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

Query: 133 AAVQD--HLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVT 188
                  + D    + D    +    ++      AL   +     + ++        ++ 
Sbjct: 128 CDPYREGYADCATYLADVEQSM---GLMNSGAVYALWDYSA-EFGDELSFREGESVTVLR 183

Query: 189 IKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVH 233
            +D   +T    A        V          +  +  K     H
Sbjct: 184 -RDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 92.9 bits (232), Expect = 2e-22
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 18/146 (12%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR--DP 184
            L +AA +  ++ V  +L+  A+ +        G+  +      G   +   L+    +P
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70

Query: 185 EIVTIKDKKGQT-ALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRP 241
                 D    T  +H A +      +  +    A    L+ RD  G   V +A      
Sbjct: 71  NC---ADPATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHR 124

Query: 242 QIVSLLLSYTSIDVNAINNQRETAMD 267
            +   L +         N+ R  A +
Sbjct: 125 DVARYLRAAAG-GTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.5 bits (223), Expect = 3e-21
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 158 KNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215
           +     L TAA  G +  V AL++   +P      +  G+  + + + G    V E +L 
Sbjct: 10  EPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMMGSA-RVAELLLL 65

Query: 216 --ADHLILNERDKKGNT-AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKL 272
             A+    N  D    T  VH A R+     + +L    +  ++  +      +DLA   
Sbjct: 66  HGAE---PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-RLDVRDAWGRLPVDLA--E 119

Query: 273 QYGDSTLEIKEALAEAGA 290
           + G    ++   L  A  
Sbjct: 120 ELGH--RDVARYLRAAAG 135

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 26/148 (17%)

Query: 97  HVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADV 150
             AA +G +   + L+            + +S    P+          V   +L   A+ 
Sbjct: 17  ATAAARGRVEEVRALLEAGANP-----NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP 70

Query: 151 SCTRIVRKNGKT-ALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCP 207
           +C         T  +H AAR G ++ +  L       +   ++D  G+  + +A +    
Sbjct: 71  NCA---DPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHR 124

Query: 208 SVVEYILS--ADHLILNERDKKGNTAVH 233
            V  Y+ +           +     A  
Sbjct: 125 DVARYLRAAAGG---TRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 16/161 (9%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
            +     L  +AA    +    LL+   +       +        V    G   +A+ L+
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM-MGSARVAELLL 64

Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARY 170
               E   +  ++ T P++ AA +  LD +  +    A +    +    G+  +  A   
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEEL 121

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE 211
           G  ++   L             +G     +        + +
Sbjct: 122 GHRDVARYLRAAAG------GTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 19/129 (14%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTF--HVAAKKGHLGIAK 109
            N  G   + +        +   LL    +       +     T   H AA++G L    
Sbjct: 41  PNSYGRRPIQV-MMMGSARVAELLLLHGAEPNC----ADPATLTRPVHDAAREGFLDTLV 95

Query: 110 ELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTA 167
            L      L    D+    P+  A    H DV   +                G       
Sbjct: 96  VLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT--------RGSNHARID 146

Query: 168 ARYGLINIV 176
           A  G  +I 
Sbjct: 147 AAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 189 IKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSL 246
              +     L  A        V  +L   A+    N  +  G   + +       ++  L
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMMMG-SARVAEL 62

Query: 247 LLSYTSIDVNAINNQRETA--MDLADKLQYGDSTLEIKEALAEAGAK 291
           LL + + + N  +    T    D A   + G   L+    L  AGA+
Sbjct: 63  LLLHGA-EPNCADPATLTRPVHDAA---REGF--LDTLVVLHRAGAR 103

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.5 bits (226), Expect = 4e-22
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
               A     LD V   +    DV+      + G+  LH AA  G + I+  L+ +  + 
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLKGAD- 65

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
           +   DK   T L  AV     S V+ +LS  AD      +   G TA      +    ++
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.3 bits (215), Expect = 2e-20
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS-- 215
                    A + G ++ V   + +  + V    + G+  LH A       ++E++L   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK 271
           AD   +N  DK   T +  A  +     V LLLS    D         TA +  D 
Sbjct: 64  AD---INAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDN 115

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 190 KDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
                      A+K      V+  ++   D   +N   + G   +H A    + +I+  L
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 248 LSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
           L   + D+NA +    T +  A  +  G   +   + L   GA
Sbjct: 60  LLKGA-DINAPDKHHITPLLSA--VYEGH--VSCVKLLLSKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 41/126 (32%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELV 112
             + G   L+                                    AA  G L I + L+
Sbjct: 36  TLEGGRKPLHY-----------------------------------AADCGQLEILEFLL 60

Query: 113 SIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARY 170
               ++    D  + +PL SA  + H+  V  +L   AD +   +   +G TA       
Sbjct: 61  LKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGADKT---VKGPDGLTAFEATDNQ 116

Query: 171 GLINIV 176
            +  ++
Sbjct: 117 AIKALL 122

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 95.5 bits (237), Expect = 9e-22
 Identities = 43/266 (16%), Positives = 91/266 (34%), Gaps = 32/266 (12%)

Query: 27  LKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI-V 85
           L+ ++    ++     ++  S   +    + +   ++S  +  Q++         + + +
Sbjct: 67  LQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN-TQLNLNI 125

Query: 86  KIRSRSDMNT-FHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDH-- 138
            +      NT  H      +L + K LV              D+   S L  A    +  
Sbjct: 126 PVDE--HGNTPLHWLTSIANLELVKHLVKHGSNR-----LYGDNMGESCLVKAVKSVNNY 178

Query: 139 -LDVVNTILDADVSCTRIVRKNGKTALH------------TAARYGLINIVTALIDRDPE 185
                  +LD    C  +     +T LH             AA+Y L  ++  ++ +   
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL--ILNERDKKGNTAVHIATRKCRPQI 243
            +     + ++  +     +  S++E +     +  +LN +D  G+T ++IA R     I
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298

Query: 244 VSLLLSYTSIDVNAINNQRETAMDLA 269
           V  LL Y   D    N      +D  
Sbjct: 299 VDALLDY-GADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.1 bits (171), Expect = 2e-13
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 17/166 (10%)

Query: 53  QNDTGETALYISAANN---FQDIFSCLLKF--CDVEIV---------KIRSRSDMNTFHV 98
            ++ GE+ L  +  +        F  LL +    + +           I   S M     
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 219

Query: 99  AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRI--V 156
           AAK     +   +V       +S  +   S       +    ++  +    +    +   
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279

Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAV 202
             NG T L+ AAR G I+IV AL+D   +   I +K G   +    
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.8 bits (160), Expect = 7e-12
 Identities = 17/148 (11%), Positives = 45/148 (30%), Gaps = 8/148 (5%)

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR 182
                + L      +  ++  ++ +   +       + +   H +    L  +  A  + 
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 183 DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRK-- 238
              +    D+ G T LH         +V++++   ++       D  G + +  A +   
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVN 176

Query: 239 -CRPQIVSLLLSYTSIDVNAINNQRETA 265
                    LL Y    +   ++   T 
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTI 204

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.0 bits (204), Expect = 2e-19
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 159 NGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS- 215
           NG+T LH AAR G + +V  L++   D      KDK G+T LH+A +     VV+ +L  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 216 -ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
            AD   +N +DK G T +H+A R    ++V LLL  
Sbjct: 58  GAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.0 bits (178), Expect = 7e-16
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 6/90 (6%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
           PL+ AA   HL+VV  +L+  ADV+      KNG+T LH AAR G + +V  L++   ++
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
              KDK G+T LH+A +     VV+ +L A
Sbjct: 62  -NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 37.7 bits (89), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 53  QNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNT-FHVAAKKGHLGIAKE 110
           ++  G T L+++A N   ++   LL+   DV         +  T  H+AA+ GHL + K 
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKL 86

Query: 111 LVS 113
           L+ 
Sbjct: 87  LLE 89

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 78.4 bits (194), Expect = 7e-18
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 133 AAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIK 190
            +   H    + ++   + +        +    L  AAR G  + V  L+    ++   K
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG------SDLGKKLLEAARAGQDDEVRILMANGADV-AAK 53

Query: 191 DKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
           DK G T LH+A +     VV+ +L   AD   +  +DK G TA  I+       +  +L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 99  AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIV 156
            +   H   +  LV     +     S     L  AA     D V  ++   ADV+     
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD-- 54

Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
            KNG T LH AAR G + +V  L++   ++   +DK G+TA  +++      + E +
Sbjct: 55  -KNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 4e-14
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 167 AARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNER 224
            + +   +  + L+ R   +           L  A +      V  +++  AD   +  +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGAD---VAAK 53

Query: 225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIK 282
           DK G+T +H+A R    ++V LLL     DV A +   +TA D++      D    ++
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 159 NGKTALHTAARYGLINIV--TALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS- 215
             +TALH A R      +     + ++   +  +  KG TALH          ++ +L  
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 216 -ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
            A    +   ++ G T + IA R        LL    S   N+  +
Sbjct: 228 KAS---IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 191 DKKGQTALHMAVKGQCPSVVEYI--LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
            +  +TALH+AV+    + +  +  L  +   L+++  KG+TA+H        + + LLL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA 288
              +  +   N   ET +D+A +L++       +E L +A
Sbjct: 226 RGKA-SIEIANESGETPLDIAKRLKHEH----CEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 2/106 (1%)

Query: 112 VSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT-ILDADVSCTRIVRKNGKTALHTAARY 170
           ++    L    +   T+   +    D   +     L  +          G TALH     
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
                +  L+     I  I ++ G+T L +A + +     E +  A
Sbjct: 216 DNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 193 KGQTALHMAV---KGQCPSVVEYIL--SADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
             +  LH+AV         +V++I+        L+ +   GNTA+H A    +P  + LL
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 248 LSYTSIDVNAINNQRETAMDLADKLQYGD 276
           L   +  V  +N   ETA+D+A K  + +
Sbjct: 246 LKGRA-LVGTVNEAGETALDIARKKHHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 148 ADVSCTRIVRKN---GKTALHTAARYG---LINIVTALIDRDPEIVTIKDKKGQTALHMA 201
            D              +  LH A +      + +V  +I      +  K   G TALH A
Sbjct: 175 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYA 233

Query: 202 VKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
                P  ++ +L   A    +   ++ G TA+ IA +K   +   LL
Sbjct: 234 ALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 159 NGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
           +G TALH AA Y   + +  L+        V   ++ G+TAL +A K       E     
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTV---NEAGETALDIARKKHHKECEE----- 276

Query: 217 DHLILNERDKKGNTAVHI 234
             L+   +       +H+
Sbjct: 277 --LLEQAQAGTFAFPLHV 292

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 191 DKKGQTALHMAVKGQCPSVVEYIL--SADHLILNERDKKGNTAVHIATRKCRPQIVSLLL 248
            +   T L  A         E++L   A+   +N+ D  G   +H AT      +  L L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFL 288

Query: 249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAME 304
              + D+ A +++    + +A  ++  ++ +     LA+     A      DE   
Sbjct: 289 KRGA-DLGARDSEGRDPLTIA--METANADIVTLLRLAKMREAEAAQGQAGDETYL 341

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 18/136 (13%)

Query: 124 SSNTSPLYSAAVQDHLDVVNTIL--DADVSCT---RIVRKNGKTALHTAARY---GLINI 175
           +     L++A     L  V        D          +   +  LH A +      + +
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189

Query: 176 VTALI----DRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA 231
           V  +I          +  K   G TALH A     P  ++ +L    L+    ++ G TA
Sbjct: 190 VDFIIQNGGH-----LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETA 243

Query: 232 VHIATRKCRPQIVSLL 247
           + IA +K   +   LL
Sbjct: 244 LDIARKKHHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 81/546 (14%), Positives = 157/546 (28%), Gaps = 145/546 (26%)

Query: 1   MDSLKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETA 60
             +L S +    Q F   V   + + L + I    +  +      + +   + ND    A
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 61  LY-ISAANNFQDIFSCLLKFCDVEIV---------------------KIRSRSDMNTF-- 96
            Y +S    +  +   LL+    + V                     K++ + D   F  
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 97  HVAAKKGHLGIAKELVSIW----PELCKSCDSSNTSPLYSAAVQDHL------------- 139
           ++        + + L  +     P      D S+   L   ++Q  L             
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 140 ----DVVN-TILDA-DVSCTRIVRKNGKTALHTAARY-GLINIVTALIDRDPEIVTIKD- 191
               +V N    +A ++SC        K  L T  R+  + + ++A       +      
Sbjct: 248 LVLLNVQNAKAWNAFNLSC--------KILLTT--RFKQVTDFLSAATTTHISLDHHSMT 297

Query: 192 -KKGQT------ALHM--------AVKGQCPSVVEYI--LSADHLILNER------DKKG 228
               +        L           +    P  +  I     D L   +       DK  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKL- 355

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSI---DVNAI----------NNQRETAMDLADKLQYG 275
            T +  +     P     +    S+     + I          +  +   M + +KL   
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLH-- 412

Query: 276 DSTLEIKEALAEAGAKHARYVGQVDEAMELKRTVSDIK--HEVSAQLIQNEKTNRRVSGI 333
                 K +L E   K +         +ELK  + +    H     ++ +    +     
Sbjct: 413 ------KYSLVEKQPKESTI-SIPSIYLELKVKLENEYALH---RSIVDHYNIPKTFDSD 462

Query: 334 AKELRKL----------HREAVQNTTNSITVVAVLFASIAFL--------ALFNLPGQYL 375
                 L          H + +++    +T+  ++F    FL          +N  G  L
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

Query: 376 --MHGPEVGKANIADKVGF---RVFCLLN-----ATSLFISLAVVVVQITLVAWDT---- 421
             +   +  K  I D        V  +L+       +L  S    +++I L+A D     
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

Query: 422 TAQKQV 427
            A KQV
Sbjct: 582 EAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.63
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-42  Score=336.80  Aligned_cols=264  Identities=23%  Similarity=0.314  Sum_probs=241.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcc-cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQ-NDTGETALYISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~-n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      .+|+|+||.|++.|+.++++.|++.+++.             +.. +..|.||||+|+..|+.+++++|++.+  .+++.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~   67 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANV-------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVL   67 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcc
Confidence            35789999999999999999999998763             333 678999999999999999999999987  55777


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc----------c
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV----------R  157 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d  157 (534)
                      .+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+. +..          +
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~  145 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLR  145 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhc
Confidence            8899999999999999999999999999988 678999999999999999999999999998874 333          7


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhc-CCccceecCCCCchHHHHHHhCCC----HHHHHHhHhcCccccccccCCCChHH
Q 009457          158 KNGKTALHTAARYGLINIVTALIDR-DPEIVTIKDKKGQTALHMAVKGQC----PSVVEYILSADHLILNERDKKGNTAV  232 (534)
Q Consensus       158 ~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~in~~d~~g~T~L  232 (534)
                      ..|.||||.|+..|+.+++++|++. +.+ ++..|..|+||||.|+..++    .+++++|++. +.+++.+|..|+|||
T Consensus       146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          146 KGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPL  223 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHH
Confidence            8899999999999999999999998 666 68899999999999999999    8999999996 566799999999999


Q ss_pred             HHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccc
Q 009457          233 HIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARY  295 (534)
Q Consensus       233 h~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~  295 (534)
                      |+|+..|+.+++++|++..|++++.+|..|+||||+|+.  .++.  +++++|+++|++....
T Consensus       224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~--~~~~--~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE--LKLK--KIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHHSSCSCCS
T ss_pred             HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHH--cCcH--HHHHHHHHcCCCCCcc
Confidence            999999999999999997799999999999999999999  7776  9999999999987543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-41  Score=353.47  Aligned_cols=293  Identities=21%  Similarity=0.279  Sum_probs=241.8

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCC--CCcchH------------HHHHh------cccCCCCcHHHHH
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAP--DGSSLV------------SELMA------MQNDTGETALYIS   64 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~--~~~~~~------------~~ll~------~~n~~g~T~L~~A   64 (534)
                      +..+..|.||||+|++.|+.++++.|++.+.+.+..  .+.+++            ..++.      ..+..|.||||+|
T Consensus        74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  153 (437)
T 1n11_A           74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA  153 (437)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence            346788999999999999999999999998765432  233332            12222      2356788888888


Q ss_pred             HHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHH
Q 009457           65 AANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNT  144 (534)
Q Consensus        65 a~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~  144 (534)
                      +..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++++++. +..+..|.||||+|+..|+.+++++
T Consensus       154 ~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~  230 (437)
T 1n11_A          154 AKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARS  230 (437)
T ss_dssp             HHTTCHHHHHHHHHTT--CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            8888888888888876  456677888888999998888889999888888876 5667788899999999999999999


Q ss_pred             HHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccc
Q 009457          145 ILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNER  224 (534)
Q Consensus       145 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~  224 (534)
                      |++.+.+ .+..+..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|++.|+.+++++|+++ +.+++.+
T Consensus       231 Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~  307 (437)
T 1n11_A          231 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDAT  307 (437)
T ss_dssp             HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC
T ss_pred             HHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CccCCCC
Confidence            9988877 567788899999999999999999999998888 478888899999999999999999999986 5566888


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHH
Q 009457          225 DKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAME  304 (534)
Q Consensus       225 d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~  304 (534)
                      |..|+||||+|+..|+.+++++|+++ |+++|.+|..|.||||+|+.  .++.  +++++|++.|+++...+..+.++++
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~--~g~~--~iv~~Ll~~ga~~~~~~~~g~t~l~  382 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQ--QGHT--DIVTLLLKNGASPNEVSSDGTTPLA  382 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHH--CChH--HHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            99999999999999999999999984 88999999999999999988  6766  8999999999988877777777777


Q ss_pred             Hhhh
Q 009457          305 LKRT  308 (534)
Q Consensus       305 ~~~~  308 (534)
                      +...
T Consensus       383 ~A~~  386 (437)
T 1n11_A          383 IAKR  386 (437)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.8e-41  Score=348.24  Aligned_cols=275  Identities=22%  Similarity=0.260  Sum_probs=147.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      +..+..|.||||.|++.|+.+++++|++.+.+.             +.++..|.||||+|+..|+.++|++|++++  .+
T Consensus        41 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~  105 (437)
T 1n11_A           41 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-------------NAKAKDDQTPLHCAARIGHTNMVKLLLENN--AN  105 (437)
T ss_dssp             CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-------------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-------------CCCCCCCCCHHHHHHHCCCHHHHHHHHhCC--CC
Confidence            346788999999999999999999999998764             344555556666666666666666666554  33


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ++..+..|.||||+|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus       106 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L  183 (437)
T 1n11_A          106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPL  183 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCCCHH
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHH
Confidence            4444555555555555555555555555555444 33444555555555555555555555555544 334444555555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV  244 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv  244 (534)
                      |+|+..|+.+++++|++.+++ ++..+..|.||||+|+..|+.+++++|++. +..++..|..|.||||+|+..|+.+++
T Consensus       184 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v  261 (437)
T 1n11_A          184 HVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMV  261 (437)
T ss_dssp             HHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            555555555555555555444 234444444555555544444444444443 222344444444444444444444444


Q ss_pred             HHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHH
Q 009457          245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAM  303 (534)
Q Consensus       245 ~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  303 (534)
                      ++|++. +++++..|..|.||||+|+.  .++.  +++++|++.|++.......+.+++
T Consensus       262 ~~Ll~~-~~~~~~~~~~g~t~L~~A~~--~~~~--~~~~~Ll~~g~~~~~~~~~g~t~L  315 (437)
T 1n11_A          262 ALLLSK-QANGNLGNKSGLTPLHLVAQ--EGHV--PVADVLIKHGVMVDATTRMGYTPL  315 (437)
T ss_dssp             HHHHTT-TCCTTCCCTTCCCHHHHHHH--HTCH--HHHHHHHHHTCCTTCCCSSCCCHH
T ss_pred             HHHHhc-CCCCCCCCCCCCCHHHHHHH--cCCH--HHHHHHHhCCccCCCCCCCCCCHH
Confidence            444442 44444444444444444444  3333  444444444444433333333333

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=9.5e-41  Score=335.87  Aligned_cols=257  Identities=22%  Similarity=0.289  Sum_probs=150.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhccc-CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQN-DTGETALYISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n-~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      ..|+|+||.||+.|+.++|+.||+++.+.             +.++ ..|.||||+|+..|+.++|++|++++  .+++.
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadv-------------n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~~~   87 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANV-------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVL   87 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCT-------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCC-------------CccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--Cchhh
Confidence            34789999999999999999999999873             4444 45999999999999999999999987  33333


Q ss_pred             c---------------------------------CCCCCcHHHHHHHcCCHHHHHHHHhhCcccc---------ccCCCC
Q 009457           88 R---------------------------------SRSDMNTFHVAAKKGHLGIAKELVSIWPELC---------KSCDSS  125 (534)
Q Consensus        88 ~---------------------------------~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~---------~~~d~~  125 (534)
                      .                                 +..|.||||+|+..|+.+++++|+++++++.         ...+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~  167 (337)
T 4g8k_A           88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG  167 (337)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTC
T ss_pred             hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCC
Confidence            4                                 4445555555555555555555555544431         112334


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCC----HHHHHHHHhcCCccceecCCCCchHHHH
Q 009457          126 NTSPLYSAAVQDHLDVVNTILDA-DVSCTRIVRKNGKTALHTAARYGL----INIVTALIDRDPEIVTIKDKKGQTALHM  200 (534)
Q Consensus       126 g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  200 (534)
                      |.||||+|+..|+.+++++|++. +++ .+.+|..|.||+|.++..++    .+++++|++++++ ++.+|..|+||||+
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~  245 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLIL  245 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHH
Confidence            55555555555555555555532 333 34455555555555443322    2344555555555 34555555555555


Q ss_pred             HHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHH
Q 009457          201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLE  280 (534)
Q Consensus       201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~  280 (534)
                      |+..|+.+++++|++..+.++|.+|.+|+||||+|+..|+.+++++|+++ |+++|.     .+|||+|+.  .++.  +
T Consensus       246 a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n~-----~~~L~~A~~--~~~~--~  315 (337)
T 4g8k_A          246 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDC-----GDLVMTARR--NYDH--S  315 (337)
T ss_dssp             HHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSSTT-----CCHHHHHHH--TTCH--H
T ss_pred             HHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC-----CCHHHHHHH--cCCH--H
Confidence            55555555555555544444555555555555555555555555555552 454432     235555555  4443  5


Q ss_pred             HHHHHHHcCCcc
Q 009457          281 IKEALAEAGAKH  292 (534)
Q Consensus       281 i~~~L~~~ga~~  292 (534)
                      ++++|+++||++
T Consensus       316 iv~~Ll~~GA~~  327 (337)
T 4g8k_A          316 LVKVLLSHGAKE  327 (337)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHCcCCC
Confidence            555555555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.9e-41  Score=329.96  Aligned_cols=270  Identities=21%  Similarity=0.249  Sum_probs=207.5

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      .-...|.|+||+|++.|+.+.+..++...+....  +...+..-+...+..|.||||+|+..|+.+++++|++.+  .++
T Consensus        10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~   85 (285)
T 3d9h_A           10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFP--GIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAV   85 (285)
T ss_dssp             --------------------------------CC--SEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCS
T ss_pred             ccchHHHHHHHHHhhcCCCCCcccCCCCcccccc--chhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence            3456799999999999999888888777654210  000011124668899999999999999999999999987  557


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH  165 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  165 (534)
                      +..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++..  .+.+|.||||
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~  162 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIH  162 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHH
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHH
Confidence            888999999999999999999999999999988 7789999999999999999999999999998843  3556999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457          166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS  245 (534)
Q Consensus       166 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~  245 (534)
                      +|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++ .|..|+||||+|+..++.++++
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~-~~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT-TCCTT-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999998 588999999999999999999999999997 45556 4899999999999999999999


Q ss_pred             HHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc-CCcc
Q 009457          246 LLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA-GAKH  292 (534)
Q Consensus       246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~-ga~~  292 (534)
                      +|+++ |++++.+|.+|+||||+|+.    +.  +++++|++. |++.
T Consensus       240 ~Ll~~-gad~~~~d~~g~t~l~~A~~----~~--~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          240 LLMDF-GADTQAKNAEGKRPVELVPP----ES--PLAQLFLEREGASL  280 (285)
T ss_dssp             HHHHT-TCCTTCCCTTSCCGGGGSCT----TS--HHHHHHHHHC----
T ss_pred             HHHHC-CCCCCCcCCCCCCHHHHhcC----cc--HHHHHHHHhhccCC
Confidence            99995 99999999999999999974    34  899999987 6654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-41  Score=343.95  Aligned_cols=262  Identities=17%  Similarity=0.206  Sum_probs=228.1

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhccc-CCCCcHHHHHHHcCCHHHHHHHH------
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQN-DTGETALYISAANNFQDIFSCLL------   77 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n-~~g~T~L~~Aa~~g~~~iv~~Ll------   77 (534)
                      ..++..|.||||.|+..|+ ++++.|+...               ++..| ..|.||||+|+..|+.+++++|+      
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~---------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~  151 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITRES---------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE  151 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCSTTT---------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHH
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhcccc---------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4578899999999999654 7777665432               34566 78999999999999999888887      


Q ss_pred             --hcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC---CCc
Q 009457           78 --KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDAD---VSC  152 (534)
Q Consensus        78 --~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~  152 (534)
                        +.+  .+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+   .+ 
T Consensus       152 ll~~g--a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-  227 (373)
T 2fo1_E          152 CIAAG--ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD-  227 (373)
T ss_dssp             HHHTC--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT-
T ss_pred             HHhcC--CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC-
Confidence              555  567888999999999999999999999999999998 678999999999999999999999999987   44 


Q ss_pred             ccccccCCCcHHHHHHHcC---CHHHHHHHHhcCCcccee--------cCCCCchHHHHHHhCCCHHHHHHhHhcCcccc
Q 009457          153 TRIVRKNGKTALHTAARYG---LINIVTALIDRDPEIVTI--------KDKKGQTALHMAVKGQCPSVVEYILSADHLIL  221 (534)
Q Consensus       153 ~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~~--------~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~i  221 (534)
                      .+..|.+|.||||+|+..|   +.+++++|++.++++ +.        .|..|+||||+|+..|+.+++++|++.++.++
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence            5678999999999999998   899999999999884 43        56789999999999999999999999877889


Q ss_pred             ccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          222 NERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       222 n~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                      +.+|.+|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.  .++.  +++++|++.|++.
T Consensus       307 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~--~g~~--~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQA--NNHH--NIVDIFDRCRPER  372 (373)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHH--TTCH--HHHHHHHTTC---
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHH--cCCH--HHHHHHHhcCccc
Confidence            99999999999999999999999999995 99999999999999999999  7777  9999999998753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.6e-39  Score=324.31  Aligned_cols=276  Identities=22%  Similarity=0.257  Sum_probs=240.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      +..+.|+||.|++.|+.+.++.++......            ++..|..|.||||+|+..|+.++|++|++.+  .+++.
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~   86 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVN------------CHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHA   86 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTT------------CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCC------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCc
Confidence            456789999999999999999999864321            4567889999999999999999999999987  56788


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      .+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.+|+|+|
T Consensus        87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a  164 (351)
T 3utm_A           87 KDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMA  164 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHH
Confidence            8999999999999999999999999999988 67899999999999999999999999999988 667888899887764


Q ss_pred             ---------------------HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhC---CCHHHHHHhHhcCcccccc
Q 009457          168 ---------------------ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG---QCPSVVEYILSADHLILNE  223 (534)
Q Consensus       168 ---------------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~in~  223 (534)
                                           +..++.+.++.++..... ....+..|.||||+|+..   +..+++++|++. +.+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~  242 (351)
T 3utm_A          165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNE  242 (351)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTC
T ss_pred             hhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCC
Confidence                                 556777777777776554 345678899999999998   557899999986 566789


Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHH
Q 009457          224 RDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAM  303 (534)
Q Consensus       224 ~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  303 (534)
                      +|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.  .++.  +++++|++.|+++...+..+.++.
T Consensus       243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~--~~~~--~~v~~Ll~~gad~~~~~~~g~tal  317 (351)
T 3utm_A          243 KNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAAL--AGHL--QTCRLLLSYGSDPSIISLQGFTAA  317 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH--HTCH--HHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH--cCcH--HHHHHHHHcCCCCCCcCCCCCChh
Confidence            999999999999999999999999994 89999999999999999998  6666  999999999999888777777777


Q ss_pred             HHh
Q 009457          304 ELK  306 (534)
Q Consensus       304 ~~~  306 (534)
                      ++.
T Consensus       318 ~~a  320 (351)
T 3utm_A          318 QMG  320 (351)
T ss_dssp             HHS
T ss_pred             hhh
Confidence            664

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.3e-39  Score=331.25  Aligned_cols=262  Identities=15%  Similarity=0.099  Sum_probs=224.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      ..|..|.||||+||+.|+.++|+.|++.+.+             ++..|..|.||||+|+..|+.++|++|++.+.    
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----   77 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVS-------------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE----   77 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----
Confidence            4577899999999999999999999999876             45788999999999999999999999999874    


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhh----Cccccc----------------cCCCCCCcHHHHHHHcC--CHHHHH
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSI----WPELCK----------------SCDSSNTSPLYSAAVQD--HLDVVN  143 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~----~~~l~~----------------~~d~~g~tpLh~Aa~~g--~~~~v~  143 (534)
                      ...+..|.||||+|+..|+.+++++|++.    +.+...                ..|..|.||||+|+..|  +.++++
T Consensus        78 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~  157 (364)
T 3ljn_A           78 VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK  157 (364)
T ss_dssp             CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred             CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence            33456899999999999999999999998    554421                16778999999999999  999999


Q ss_pred             HHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCcc----ceecCCCCchHHHHHHhCCCHHHHHHhHhcCcc
Q 009457          144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI----VTIKDKKGQTALHMAVKGQCPSVVEYILSADHL  219 (534)
Q Consensus       144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  219 (534)
                      +|++.+++ .+..|..|.||||+|+..|+.+++++|++.+++.    ++..|..|+||||+|+..|+.+++++|+++ +.
T Consensus       158 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga  235 (364)
T 3ljn_A          158 ILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GI  235 (364)
T ss_dssp             HHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TC
T ss_pred             HHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Confidence            99999988 6788999999999999999999999999998872    478899999999999999999999999996 56


Q ss_pred             ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccc------------cccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457          220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNA------------INNQRETAMDLADKLQYGDSTLEIKEALAE  287 (534)
Q Consensus       220 ~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~------------~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~  287 (534)
                      +++.+|..|.||||+|+..|+.+++++|+++ |.+++.            .+..|.||++.|+.  .++.  +.+..|+.
T Consensus       236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~--~~~~--~~v~~ll~  310 (364)
T 3ljn_A          236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA--DPSK--QEVLQLLQ  310 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC--CHHH--HHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccccchhhhh--ccCH--HHHHHHHH
Confidence            6799999999999999999999999999996 555432            56678888888876  3333  44444554


Q ss_pred             cCCc
Q 009457          288 AGAK  291 (534)
Q Consensus       288 ~ga~  291 (534)
                      .+++
T Consensus       311 ~~~~  314 (364)
T 3ljn_A          311 EKLD  314 (364)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-38  Score=307.59  Aligned_cols=229  Identities=19%  Similarity=0.184  Sum_probs=135.4

Q ss_pred             ccCCCCCChHHHHHHHcC-------------CHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHH
Q 009457            5 KSFRFITHQSFFSAVRSG-------------DLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQD   71 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G-------------~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~   71 (534)
                      +..|.+|.||||+|+..|             +.++++.|++.+++.            ....|..|.||||+|+..|+.+
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~------------~~~~d~~g~t~L~~A~~~g~~~   71 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL------------HNQTDRTGETALHLAARYSRSD   71 (253)
T ss_dssp             ------------------------------------------------------------CCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc------------ccccCCCCCcHHHHHHHcCCHH
Confidence            457889999999999988             677777777766542            2334667777777777777777


Q ss_pred             HHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457           72 IFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS  151 (534)
Q Consensus        72 iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  151 (534)
                      +|++|++.+  .+++..+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++
T Consensus        72 ~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (253)
T 1yyh_A           72 AAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD  149 (253)
T ss_dssp             HHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC
T ss_pred             HHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence            777777765  445666677777777777777777777777776644466667777777777777777777777777666


Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH
Q 009457          152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA  231 (534)
Q Consensus       152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~  231 (534)
                       .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|..|+||
T Consensus       150 -~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tp  226 (253)
T 1yyh_A          150 -VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLP  226 (253)
T ss_dssp             -TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCH
T ss_pred             -CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCH
Confidence             455667777777777777777777777777766 466677777777777777777777777765 34456677777777


Q ss_pred             HHHHHHcCCHHHHHHHhcc
Q 009457          232 VHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       232 Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      ||+|+.+|+.+++++|...
T Consensus       227 l~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          227 RDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            7777777777777777664

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-37  Score=304.57  Aligned_cols=236  Identities=19%  Similarity=0.231  Sum_probs=216.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhh
Q 009457            7 FRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVK   86 (534)
Q Consensus         7 ~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~   86 (534)
                      .+..|.||||+|++.|+.++++.|++.+.+             ++..+..|.||||+|+..|+.+++++|++.+  .+++
T Consensus        35 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~   99 (285)
T 1wdy_A           35 EEEGGWTPLHNAVQMSREDIVELLLRHGAD-------------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVN   99 (285)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTT
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCC
Confidence            377899999999999999999999999876             3467889999999999999999999999987  5577


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccC---------CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccc
Q 009457           87 IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC---------DSSNTSPLYSAAVQDHLDVVNTILDA-DVSCTRIV  156 (534)
Q Consensus        87 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~---------d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~  156 (534)
                      ..+..|.||||+|+..|+.+++++|+++++++....         +..|.||||+|+..|+.+++++|++. +.+ .+..
T Consensus       100 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~  178 (285)
T 1wdy_A          100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNAC  178 (285)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCC
T ss_pred             ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCcc
Confidence            889999999999999999999999999998873221         78899999999999999999999997 666 6788


Q ss_pred             ccCCCcHHHHHHHcCC----HHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHH
Q 009457          157 RKNGKTALHTAARYGL----INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAV  232 (534)
Q Consensus       157 d~~g~tpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~L  232 (534)
                      |..|.||||+|+..++    .+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++..+.+++.+|..|+|||
T Consensus       179 ~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l  257 (285)
T 1wdy_A          179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL  257 (285)
T ss_dssp             CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH
Confidence            9999999999999999    9999999999998 5889999999999999999999999999976888899999999999


Q ss_pred             HHHHHcCCHHHHHHHhccCCcccccccc
Q 009457          233 HIATRKCRPQIVSLLLSYTSIDVNAINN  260 (534)
Q Consensus       233 h~A~~~~~~~iv~~Ll~~~g~~~~~~n~  260 (534)
                      |+|+..++.+++++|+++ |++++.+|.
T Consensus       258 ~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          258 LLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             HHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence            999999999999999995 999998773

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-37  Score=314.11  Aligned_cols=259  Identities=21%  Similarity=0.210  Sum_probs=229.1

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      +..|..|.||||+|++.|+.++++.|++.+.+             ++.+|..|.||||+|+..|+.+++++|++++  .+
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~  116 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHG--AC  116 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CC
Confidence            35678899999999999999999999999876             4567889999999999999999999999987  56


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH---------------------HHcCCHHHHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA---------------------AVQDHLDVVN  143 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A---------------------a~~g~~~~v~  143 (534)
                      ++..+..|.||||+|+..|+.+++++|++++++. +..+..|.||+++|                     +..++.+.+.
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (351)
T 3utm_A          117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVK  195 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHH
Confidence            7788999999999999999999999999999988 67789999998775                     4556666677


Q ss_pred             HHHhcCCCcccccccCCCcHHHHHHHc---CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccc
Q 009457          144 TILDADVSCTRIVRKNGKTALHTAARY---GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI  220 (534)
Q Consensus       144 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  220 (534)
                      .++..... ....+..|.||||+|+..   +..+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++. +.+
T Consensus       196 ~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~  272 (351)
T 3utm_A          196 KTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAK  272 (351)
T ss_dssp             HHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             HHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            77766544 344678899999999999   558999999999998 588999999999999999999999999996 567


Q ss_pred             cccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          221 LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       221 in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      +|.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||+|+|..        ++.++|.+.+..
T Consensus       273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a~~--------~~~~~l~~~~~~  334 (351)
T 3utm_A          273 MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGNE--------AVQQILSESTPM  334 (351)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHSCH--------HHHHHHHHC---
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhhhH--------HHHHHHHhcccc
Confidence            799999999999999999999999999995 99999999999999999976        888888877654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-38  Score=311.25  Aligned_cols=253  Identities=19%  Similarity=0.140  Sum_probs=192.0

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457            4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE   83 (534)
Q Consensus         4 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~   83 (534)
                      ....|.+|.||||+|++.|+.++|+.|++.+.+.          ..++.+|..|.||||+|+..|+.++|++|++++  .
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a   69 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH----------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--A   69 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS----------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--C
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc----------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--C
Confidence            4568999999999999999999999999988752          236788999999999999999999999999987  5


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcccc------------ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC------------KSCDSSNTSPLYSAAVQDHLDVVNTILDADVS  151 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~------------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  151 (534)
                      +++..+..|.||||+|+..|+.+++++|++++++..            ......+.++++.++..+.......++.....
T Consensus        70 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (282)
T 1oy3_D           70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (282)
T ss_dssp             CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhh
Confidence            677889999999999999999999999999887632            12233567778777776654444433332222


Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC-CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCCh
Q 009457          152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK-KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNT  230 (534)
Q Consensus       152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T  230 (534)
                      ..+..+..|.||||+|+..|+.+++++|++.++++ +..+. .|+||||+|+..|+.+++++|+++ +.+++.+|..|+|
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t  227 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRT  227 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCC
Confidence            35678899999999999999999999999999994 66664 599999999999999999999997 6678999999999


Q ss_pred             HHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          231 AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       231 ~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      |||+|+..++.+++++|+++ |++++.+|.+|.||+++|..
T Consensus       228 pL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          228 PLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHHHTSSCHHHHHHHHHT-TCCCCCCC------------
T ss_pred             HHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcccccccccCC
Confidence            99999999999999999995 99999999999999999987

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-38  Score=306.44  Aligned_cols=230  Identities=19%  Similarity=0.234  Sum_probs=181.9

Q ss_pred             HhcccCCCCcHHHHHHHcC-------------CHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCc
Q 009457           50 MAMQNDTGETALYISAANN-------------FQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP  116 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~  116 (534)
                      ++.+|.+|.||||+|+..|             +.+++++|++.+. ......+..|.||||+|+..|+.+++++|+++++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            5678899999999999987             8999999999863 2234468899999999999999999999999999


Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCch
Q 009457          117 ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT  196 (534)
Q Consensus       117 ~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  196 (534)
                      ++ +..|..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+|
T Consensus        82 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t  159 (253)
T 1yyh_A           82 DA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKS  159 (253)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCC
Confidence            88 678999999999999999999999999999866788999999999999999999999999999998 5889999999


Q ss_pred             HHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCC
Q 009457          197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD  276 (534)
Q Consensus       197 ~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~  276 (534)
                      |||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||+|+|+.  .++
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~--~g~  235 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE--RMH  235 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH--TTC
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccCCCCHHHHHHH--cCC
Confidence            99999999999999999996 566799999999999999999999999999995 99999999999999999999  777


Q ss_pred             CHHHHHHHHHHc
Q 009457          277 STLEIKEALAEA  288 (534)
Q Consensus       277 ~~~~i~~~L~~~  288 (534)
                      .  +++++|...
T Consensus       236 ~--~i~~~l~~~  245 (253)
T 1yyh_A          236 H--DIVRLLDLE  245 (253)
T ss_dssp             H--HHHHHHHC-
T ss_pred             H--HHHHHHHHH
Confidence            7  999988754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.3e-38  Score=302.23  Aligned_cols=233  Identities=20%  Similarity=0.214  Sum_probs=201.5

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcC--ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCC
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFC--DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT  127 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~  127 (534)
                      ++.+|.+|.||||+|+..|+.+++++|++..  ...+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence            4678999999999999999999999999720  11456778899999999999999999999999999988 67799999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC---cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC-CCCchHHHHHHh
Q 009457          128 SPLYSAAVQDHLDVVNTILDADVS---CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD-KKGQTALHMAVK  203 (534)
Q Consensus       128 tpLh~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~  203 (534)
                      ||||+|+..|+.+++++|++.++.   ..+..+..|.||||+|+..|+.+++++|++.+++. +..+ ..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHH
Confidence            999999999999999999998872   25678899999999999999999999999999984 6666 889999999999


Q ss_pred             CCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHH
Q 009457          204 GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKE  283 (534)
Q Consensus       204 ~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~  283 (534)
                      .|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||+|+|+.  .++.  ++++
T Consensus       160 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~--~~~~--~i~~  233 (241)
T 1k1a_A          160 NNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS--RRVI--DILR  233 (241)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS--HHHH--HHHT
T ss_pred             cCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHh--cCcH--HHHh
Confidence            9999999999997 566799999999999999999999999999994 99999999999999999987  4444  7777


Q ss_pred             HHHHcCC
Q 009457          284 ALAEAGA  290 (534)
Q Consensus       284 ~L~~~ga  290 (534)
                      .|.+.++
T Consensus       234 ~l~~~~a  240 (241)
T 1k1a_A          234 GKATRPA  240 (241)
T ss_dssp             C------
T ss_pred             hhccCCC
Confidence            7766553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.1e-37  Score=296.94  Aligned_cols=216  Identities=25%  Similarity=0.327  Sum_probs=202.5

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP  129 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp  129 (534)
                      ++..|..|.||||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   80 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC   80 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence            3567889999999999999999999999987  557778899999999999999999999999999887 6778999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHH
Q 009457          130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSV  209 (534)
Q Consensus       130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i  209 (534)
                      ||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999998655778899999999999999999999999999998 58899999999999999999999


Q ss_pred             HHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          210 VEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       210 v~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +++|++. +.+++.+|..|.||||+|+..++.+++++|+++ |++++.+|.+|+||||+|+.
T Consensus       160 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          160 AEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCT
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Confidence            9999996 566799999999999999999999999999995 99999999999999999987

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-37  Score=295.44  Aligned_cols=227  Identities=20%  Similarity=0.255  Sum_probs=208.4

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      +..+.+|.||||.|++.|+.+++++|++.+.+             ++..+..|.||||+|+..|+.+++++|++.+  .+
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~   69 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--AL   69 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CC
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC--CC
Confidence            45788999999999999999999999999876             3567789999999999999999999999987  55


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ++..+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+.++..|.|||
T Consensus        70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L  148 (237)
T 3b7b_A           70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICL  148 (237)
T ss_dssp             CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHH
Confidence            6778899999999999999999999999999655578899999999999999999999999999988 677899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV  244 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv  244 (534)
                      |+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+.+++...+
T Consensus       149 ~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          149 HWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             HHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998 588999999999999999999999999996 566799999999999999999998766


Q ss_pred             HHHhc
Q 009457          245 SLLLS  249 (534)
Q Consensus       245 ~~Ll~  249 (534)
                      ..+++
T Consensus       227 ~~l~~  231 (237)
T 3b7b_A          227 LQMSK  231 (237)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-37  Score=293.77  Aligned_cols=224  Identities=21%  Similarity=0.211  Sum_probs=116.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      ++||||.|+..|+.+++++|++.+. ...+..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence            4455555555555555555554421 223344445555555555555555555555554444 34445555555555555


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      |+.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.
T Consensus        84 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  161 (231)
T 3aji_A           84 GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFY  161 (231)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            555555555555544 334455555555555555555555555555554 244555555555555555555555555553


Q ss_pred             CccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCC
Q 009457          217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA  290 (534)
Q Consensus       217 ~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga  290 (534)
                       +.+++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+|..  .++.  +++++|.+.|+
T Consensus       162 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~--~~~~--~i~~lL~~~~a  229 (231)
T 3aji_A          162 -KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKG--GLGL--ILKRLAEGEEA  229 (231)
T ss_dssp             -TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCH--HHHH--HHHHHHHHHHH
T ss_pred             -CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh--hHHH--HHHHHHccccc
Confidence             334455555555555555555555555555553 55555555555555555544  2222  55555555554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.8e-38  Score=298.94  Aligned_cols=227  Identities=15%  Similarity=0.176  Sum_probs=201.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHh----cCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDN----LTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFC   80 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~----~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~   80 (534)
                      +.+|.+|+||||+|++.|+.++++.|++.    +.+             ++..|..|.||||+|+..|+.+++++|++.+
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   69 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-------------LDIYNNLRQTPLHLAVITTLPSVVRLLVTAG   69 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------CCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46799999999999999999999999983    322             4567889999999999999999999999987


Q ss_pred             ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCc----cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 009457           81 DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP----ELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV  156 (534)
Q Consensus        81 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~----~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  156 (534)
                        .+++..+..|.||||+|+..|+.+++++|++.++    ++ +..|..|.||||+|+..|+.+++++|++.+.+. +..
T Consensus        70 --~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~  145 (241)
T 1k1a_A           70 --ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADI-DAV  145 (241)
T ss_dssp             --CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCC
T ss_pred             --CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccc
Confidence              5677789999999999999999999999999987    44 677899999999999999999999999999884 455


Q ss_pred             c-cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHH
Q 009457          157 R-KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA  235 (534)
Q Consensus       157 d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A  235 (534)
                      + ..|.||||+|++.|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus       146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A  223 (241)
T 1k1a_A          146 DIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA  223 (241)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTC
T ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHH
Confidence            5 8899999999999999999999999998 588999999999999999999999999996 566799999999999999


Q ss_pred             HHcCCHHHHHHHhcc
Q 009457          236 TRKCRPQIVSLLLSY  250 (534)
Q Consensus       236 ~~~~~~~iv~~Ll~~  250 (534)
                      +..|+.++++.|.+.
T Consensus       224 ~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          224 RSRRVIDILRGKATR  238 (241)
T ss_dssp             SSHHHHHHHTC----
T ss_pred             HhcCcHHHHhhhccC
Confidence            999999999998874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.9e-37  Score=292.92  Aligned_cols=211  Identities=23%  Similarity=0.233  Sum_probs=194.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA  168 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  168 (534)
                      +..+.+|||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHH
Confidence            456889999999999999999999999988788899999999999999999999999999887 6678999999999999


Q ss_pred             HcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHh
Q 009457          169 RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLL  248 (534)
Q Consensus       169 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll  248 (534)
                      ..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999999999998 588899999999999999999999999996 5567899999999999999999999999999


Q ss_pred             ccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457          249 SYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR  307 (534)
Q Consensus       249 ~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  307 (534)
                      ++ |++++.+|..|.||||+|+.  .++.  +++++|++.|++....+..+.+++++..
T Consensus       160 ~~-g~~~~~~~~~g~t~L~~A~~--~~~~--~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          160 FY-KASTNIQDTEGNTPLHLACD--EERV--EEAKFLVTQGASIYIENKEEKTPLQVAK  213 (231)
T ss_dssp             HT-TCCSCCCCTTSCCHHHHHHH--TTCH--HHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred             hc-CCCccccCCCCCCHHHHHHH--CCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            94 99999999999999999998  7766  9999999999999888888888888764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4e-37  Score=291.18  Aligned_cols=221  Identities=21%  Similarity=0.199  Sum_probs=199.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC--ccccccCCCCCCcHHHHHH
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW--PELCKSCDSSNTSPLYSAA  134 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~l~~~~d~~g~tpLh~Aa  134 (534)
                      |+||||.|+..|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+  +++....|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            7899999999999999999999863 334557899999999999999999999999999  6664447899999999999


Q ss_pred             HcCCHHHHHHHHhcC--CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHH
Q 009457          135 VQDHLDVVNTILDAD--VSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEY  212 (534)
Q Consensus       135 ~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~  212 (534)
                      ..|+.+++++|++.+  .+ .+..+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999998  55 667889999999999999999999999999998 58899999999999999999999999


Q ss_pred             hHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457          213 ILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE  287 (534)
Q Consensus       213 Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~  287 (534)
                      |++.++.+++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+|.||+|+|..  .     ++.++|++
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~--~-----~~~~~l~~  226 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN--E-----QVKKFFLN  226 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS--T-----THHHHHHT
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH--H-----HHHHHHHh
Confidence            99987688899999999999999999999999999933699999999999999999965  2     55666654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.4e-37  Score=302.59  Aligned_cols=229  Identities=15%  Similarity=0.142  Sum_probs=205.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      ...+..|.||||+|++.|+.++++.|++.+.+             ++.+|..|.||||+|+..|+.+++++|++.+  .+
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~  117 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-------------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQ  117 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-------------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-------------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CC
Confidence            34688899999999999999999999998765             4678899999999999999999999999987  56


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ++..+..|.||||+|+..|+.+++++|++.++++.  .+..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.|||
T Consensus       118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L  194 (285)
T 3d9h_A          118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPL  194 (285)
T ss_dssp             SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHH
T ss_pred             CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence            77889999999999999999999999999999873  345699999999999999999999999988 678899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV  244 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv  244 (534)
                      |+|+..|+.+++++|++.++++ + .|..|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|+  ++.+++
T Consensus       195 ~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~--~~~~~~  269 (285)
T 3d9h_A          195 YLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVP--PESPLA  269 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSC--TTSHHH
T ss_pred             HHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhc--CccHHH
Confidence            9999999999999999999985 5 488999999999999999999999996 6678999999999999999  567999


Q ss_pred             HHHhccCCcccc
Q 009457          245 SLLLSYTSIDVN  256 (534)
Q Consensus       245 ~~Ll~~~g~~~~  256 (534)
                      ++|+++.++++.
T Consensus       270 ~~Ll~~~~a~l~  281 (285)
T 3d9h_A          270 QLFLEREGASLP  281 (285)
T ss_dssp             HHHHHHC-----
T ss_pred             HHHHHhhccCCC
Confidence            999997677654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.2e-37  Score=314.65  Aligned_cols=232  Identities=19%  Similarity=0.224  Sum_probs=210.5

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP  129 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp  129 (534)
                      .+..|..|.||||+|+..|+.++|++|++.+  .+++..|..|.||||+|+..|+.+++++|++.+++.   .+..|.||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~   87 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKP   87 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCH
Confidence            4567788999999999999999999999987  567889999999999999999999999999999954   34589999


Q ss_pred             HHHHHHcCCHHHHHHHHhc----CCCcccc-----------------cccCCCcHHHHHHHcC--CHHHHHHHHhcCCcc
Q 009457          130 LYSAAVQDHLDVVNTILDA----DVSCTRI-----------------VRKNGKTALHTAARYG--LINIVTALIDRDPEI  186 (534)
Q Consensus       130 Lh~Aa~~g~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~  186 (534)
                      ||+|+..|+.+++++|++.    +.+ .+.                 .|..|.||||+|+..|  +.+++++|++.+++ 
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-  165 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-  165 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-
Confidence            9999999999999999998    655 333                 7889999999999999  99999999999998 


Q ss_pred             ceecCCCCchHHHHHHhCCCHHHHHHhHhcCcc----ccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCC
Q 009457          187 VTIKDKKGQTALHMAVKGQCPSVVEYILSADHL----ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQR  262 (534)
Q Consensus       187 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~----~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g  262 (534)
                      ++..|..|+||||+|+..|+.+++++|++.+..    ++|.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|
T Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~~~~d~~g  244 (364)
T 3ljn_A          166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEH  244 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT-TCCTTCCCTTS
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCC
Confidence            588999999999999999999999999997543    2799999999999999999999999999995 99999999999


Q ss_pred             CCHHHHHHHccCCCCHHHHHHHHHHcCCccc
Q 009457          263 ETAMDLADKLQYGDSTLEIKEALAEAGAKHA  293 (534)
Q Consensus       263 ~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~  293 (534)
                      .||||+|+.  .++.  +++++|++.|++..
T Consensus       245 ~tpL~~A~~--~g~~--~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          245 TVPLYLSVR--AAMV--LLTKELLQKTDVFL  271 (364)
T ss_dssp             CCHHHHHHH--TCCH--HHHHHHHHHSCHHH
T ss_pred             CCHHHHHHH--hChH--HHHHHHHHcCCchh
Confidence            999999999  7777  99999999998763

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.1e-37  Score=289.90  Aligned_cols=222  Identities=20%  Similarity=0.260  Sum_probs=198.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc-cC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI-RS   89 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~-~~   89 (534)
                      |+||||.|++.|+.++++.|++.++..            ....|..|.||||+|+..|+.+++++|++.+...+... .+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   69 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD   69 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCC
Confidence            789999999999999999999997642            34578999999999999999999999999874444555 78


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhC--ccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIW--PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~--~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      ..|.||||+|+..|+.+++++|++++  +++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|
T Consensus        70 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRA  147 (228)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence            89999999999999999999999998  665 67789999999999999999999999999988 678899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      +..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|++..+.+++.+|.+|.||||+|+..   ++.++|
T Consensus       148 ~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l  224 (228)
T 2dzn_A          148 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFF  224 (228)
T ss_dssp             HHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHH
T ss_pred             HHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHH
Confidence            99999999999999994336889999999999999999999999999444677899999999999999754   566667


Q ss_pred             hc
Q 009457          248 LS  249 (534)
Q Consensus       248 l~  249 (534)
                      ++
T Consensus       225 ~~  226 (228)
T 2dzn_A          225 LN  226 (228)
T ss_dssp             HT
T ss_pred             Hh
Confidence            65

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=299.93  Aligned_cols=222  Identities=22%  Similarity=0.250  Sum_probs=104.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCH-HHHHHHHhcCChhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQ-DIFSCLLKFCDVEI   84 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~-~iv~~Ll~~~~~~~   84 (534)
                      ..|.++.++|+.||+.|+.++|+.||+.+......     ....++..+..|.||||.|+..++. ++++.|++.+  .+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-----~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--ad   78 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-----AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LG   78 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CC--CC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-----ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CC
Confidence            35677889999999999999999999987642110     0122344555566666666655543 3555555554  34


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ++..|.+|+||||+|+..|+.+++++|++.++++ ...+..|.||+|+|+..++.+++++|++.+++ ++.+|..|.|||
T Consensus        79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL  156 (269)
T 4b93_B           79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPL  156 (269)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            4555555555555555555555555555555554 34455555555555555555555555555544 334455555555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHc
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRK  238 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~  238 (534)
                      |+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+.+
T Consensus       157 ~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~  228 (269)
T 4b93_B          157 IYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQN  228 (269)
T ss_dssp             HHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTT
T ss_pred             HHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhC
Confidence            555555555555555555444 244444445555555555555555444443 233444444444444444433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.9e-36  Score=284.33  Aligned_cols=232  Identities=24%  Similarity=0.285  Sum_probs=210.8

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHH
Q 009457           51 AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPL  130 (534)
Q Consensus        51 ~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL  130 (534)
                      ...|..|.|||+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+++.....+..|.|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            346788999999999999999999999987  557788899999999999999999999999999998777777899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCC-HHH
Q 009457          131 YSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-PSV  209 (534)
Q Consensus       131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~i  209 (534)
                      |+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++ .++
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHH
Confidence            999999999999999999888 567899999999999999999999999999998 58899999999999997666 889


Q ss_pred             HHHhHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc
Q 009457          210 VEYILSADHLILNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA  288 (534)
Q Consensus       210 v~~Ll~~~~~~in~~d~-~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~  288 (534)
                      +++|++. +.+++..+. .|+||||+|+..|+.+++++|+++ |++++.+|..|.||+|+|+.  .++.  +++++|++.
T Consensus       159 ~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~--~~~~--~~v~~L~~~  232 (240)
T 3eu9_A          159 TRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQ--RKNV--WMINHLQEA  232 (240)
T ss_dssp             HHHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHH--TTCH--HHHHHHHHH
T ss_pred             HHHHHhc-CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH--cCcH--HHHHHHHHh
Confidence            9999986 556688886 899999999999999999999996 89999999999999999999  7777  999999999


Q ss_pred             CCcc
Q 009457          289 GAKH  292 (534)
Q Consensus       289 ga~~  292 (534)
                      |++.
T Consensus       233 ~~~~  236 (240)
T 3eu9_A          233 RQAK  236 (240)
T ss_dssp             C---
T ss_pred             hhcc
Confidence            8865

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=297.28  Aligned_cols=215  Identities=22%  Similarity=0.277  Sum_probs=171.2

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCChh------hhhccCCCCCcHHHHHHHcCCH-HHHHHHHhhCccccccCCC
Q 009457           52 MQNDTGETALYISAANNFQDIFSCLLKFCDVE------IVKIRSRSDMNTFHVAAKKGHL-GIAKELVSIWPELCKSCDS  124 (534)
Q Consensus        52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~Aa~~g~~-~iv~~Ll~~~~~l~~~~d~  124 (534)
                      .+|..+.+||+.||..|+.++|++|++.+...      ..+..+..|.||||.|+..++. .+++.|++.|.++ +..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence            45667789999999999999999999986422      2455677899999999988876 4889999999998 78899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhC
Q 009457          125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG  204 (534)
Q Consensus       125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  204 (534)
                      +|.||||+|+..|+.+++++|++.+++ .+..+.+|.||+|.|+..++.++++.|++.+++ ++.+|..|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence            999999999999999999999999988 677899999999999999999999999999999 589999999999999999


Q ss_pred             CCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          205 QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       205 g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      |+.+++++|++. +.++|.+|..|+||||+|+..|+.+++++|+++ |+|++.+|.+|+||||+|++
T Consensus       163 g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          163 GHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             TCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCT
T ss_pred             CCHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHh
Confidence            999999999996 567799999999999999999999999999995 99999999999999999976

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.2e-36  Score=293.37  Aligned_cols=251  Identities=18%  Similarity=0.176  Sum_probs=190.4

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh-hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCc
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDV-EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS  128 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~t  128 (534)
                      ++.+|..|.||||+|+..|+.++|++|++.+.. ..++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            456789999999999999999999999987532 237788999999999999999999999999999998 678999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcc------------cccccCCCcHHHHHHHcCCHHHHHHHH-hcCCccceecCCCCc
Q 009457          129 PLYSAAVQDHLDVVNTILDADVSCT------------RIVRKNGKTALHTAARYGLINIVTALI-DRDPEIVTIKDKKGQ  195 (534)
Q Consensus       129 pLh~Aa~~g~~~~v~~Ll~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~  195 (534)
                      |||+|+..|+.+++++|++.++...            ......+.++++.++..+....+..++ ..+.+ ++..|..|+
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  159 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGH  159 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTTSC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCc
Confidence            9999999999999999999876531            122344677888777766555444433 33344 577899999


Q ss_pred             hHHHHHHhCCCHHHHHHhHhcCccccccccC-CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccC
Q 009457          196 TALHMAVKGQCPSVVEYILSADHLILNERDK-KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQY  274 (534)
Q Consensus       196 t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~-~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~  274 (534)
                      ||||+|+..|+.+++++|++. +..++.++. .|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.  .
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~--~  235 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALL--R  235 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHT--S
T ss_pred             CHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHH--c
Confidence            999999999999999999997 455687775 499999999999999999999995 99999999999999999998  7


Q ss_pred             CCCHHHHHHHHHHcCCccccccCChhhHHHHhhh
Q 009457          275 GDSTLEIKEALAEAGAKHARYVGQVDEAMELKRT  308 (534)
Q Consensus       275 ~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~  308 (534)
                      ++.  +++++|+++|++....+..+.++++....
T Consensus       236 ~~~--~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          236 PNP--ILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             SCH--HHHHHHHHTTCCCCCCC------------
T ss_pred             CCc--HHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            776  99999999999998888877777765543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.7e-35  Score=297.55  Aligned_cols=234  Identities=23%  Similarity=0.278  Sum_probs=203.0

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC-CCCcHHHHHHHcCCHHHHHHHHhhCccc-------------
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR-SDMNTFHVAAKKGHLGIAKELVSIWPEL-------------  118 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l-------------  118 (534)
                      .+.+|+||||.|++.|+.++|++||++|  .+++..+. .|+||||+|+..|+.+++++|+++++++             
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL   98 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence            3445789999999999999999999997  55666654 5999999999999999999999988754             


Q ss_pred             -------------------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------cccccCCCcHHHHHHHc
Q 009457          119 -------------------CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT---------RIVRKNGKTALHTAARY  170 (534)
Q Consensus       119 -------------------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~  170 (534)
                                         .+..|..|.||||+|+..|+.+++++|++.+++..         ...+..|.||||+|++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence                               23567889999999999999999999999887632         23456799999999999


Q ss_pred             CCHHHHHHHHhc-CCccceecCCCCchHHHHHHhCCC----HHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457          171 GLINIVTALIDR-DPEIVTIKDKKGQTALHMAVKGQC----PSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS  245 (534)
Q Consensus       171 g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~  245 (534)
                      |+.++|++|+++ +.+ ++.+|..|+|++|.++..+.    .+++++|+++ +.++|.+|.+|+||||+|+..|+.++++
T Consensus       179 g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          179 GHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             TCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence            999999999975 666 68899999999998876443    3578888886 5677999999999999999999999999


Q ss_pred             HHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457          246 LLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR  294 (534)
Q Consensus       246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~  294 (534)
                      .|++..|++++.+|.+|+||||+|+.  .++.  +++++|+++||+...
T Consensus       257 ~Ll~~~~~~vn~~d~~G~TpL~~A~~--~g~~--~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          257 RLLEQEHIEINDTDSDGKTALLLAVE--LKLK--KIAELLCKRGASTDC  301 (337)
T ss_dssp             HHHTSTTCCTTCBCTTSCBHHHHHHH--TTCH--HHHHHHHTTSCSSTT
T ss_pred             HHHHhcCCcccCcCCCCCCHHHHHHH--cCCH--HHHHHHHHCCCCCCC
Confidence            99998899999999999999999999  7777  999999999998743

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-36  Score=306.99  Aligned_cols=227  Identities=17%  Similarity=0.221  Sum_probs=204.2

Q ss_pred             CC-CCCChHHHHHHHcCCHHHHHHHH--------HhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009457            7 FR-FITHQSFFSAVRSGDLETLKNII--------DNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL   77 (534)
Q Consensus         7 ~~-~~g~t~Lh~Aa~~G~~~~v~~ll--------~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll   77 (534)
                      .| ..|.||||+|+..|+.++++.|+        +.+.+             ++.+|..|.||||+|+..|+.++|++|+
T Consensus       120 ~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-------------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll  186 (373)
T 2fo1_E          120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-------------VNAMDCDENTPLMLAVLARRRRLVAYLM  186 (373)
T ss_dssp             CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-------------TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-------------CcCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            44 78999999999999999888887        45544             4678899999999999999999999999


Q ss_pred             hcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhC---ccccccCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCC
Q 009457           78 KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIW---PELCKSCDSSNTSPLYSAAVQD---HLDVVNTILDADVS  151 (534)
Q Consensus        78 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~---~~l~~~~d~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~  151 (534)
                      +.+  .+++..+..|.||||+|+..|+.+++++|++.+   .++ +..|..|.||||+|+..+   +.+++++|++.+++
T Consensus       187 ~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~  263 (373)
T 2fo1_E          187 KAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK  263 (373)
T ss_dssp             HTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC
T ss_pred             HCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC
Confidence            987  567788999999999999999999999999987   454 678999999999999998   89999999999887


Q ss_pred             ccc-------ccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccc
Q 009457          152 CTR-------IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNER  224 (534)
Q Consensus       152 ~~~-------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~  224 (534)
                      ...       ..|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+++ +.+++.+
T Consensus       264 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~  342 (373)
T 2fo1_E          264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAV  342 (373)
T ss_dssp             SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCC
T ss_pred             cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCC
Confidence            432       35778999999999999999999999987333689999999999999999999999999996 6677999


Q ss_pred             cCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          225 DKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       225 d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      |..|+||||+|+.+|+.+++++|+++
T Consensus       343 d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          343 DATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999995

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.8e-36  Score=293.30  Aligned_cols=240  Identities=18%  Similarity=0.194  Sum_probs=211.2

Q ss_pred             HHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHH
Q 009457           19 VRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHV   98 (534)
Q Consensus        19 a~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~   98 (534)
                      ++..+.+.+..+|....              ++.+|..|.||||+|+..|+.++|++|++.+  .+++..  +|.||||+
T Consensus         7 i~~~~~~~v~~lL~~~~--------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~   68 (285)
T 3kea_A            7 INTWKSKQLKSFLSSKD--------------TFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQ   68 (285)
T ss_dssp             GGGCCHHHHHHHHHSTT--------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHH
T ss_pred             HHhcCHHHHHHHHHhCC--------------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHH
Confidence            45677777777776542              4678899999999999999999999999987  444444  59999999


Q ss_pred             HHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-CcHHHHHHHcCCHHHHH
Q 009457           99 AAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNG-KTALHTAARYGLINIVT  177 (534)
Q Consensus        99 Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~  177 (534)
                      |+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..| .||||+|+..|+.++++
T Consensus        69 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~  146 (285)
T 3kea_A           69 AATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVS  146 (285)
T ss_dssp             HTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999998 67899999999999999999999999999988 67888889 89999999999999999


Q ss_pred             HHHhcCCccceecCC-CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH-HHHHHHcCCHHHHHHHhccCCccc
Q 009457          178 ALIDRDPEIVTIKDK-KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA-VHIATRKCRPQIVSLLLSYTSIDV  255 (534)
Q Consensus       178 ~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~-Lh~A~~~~~~~iv~~Ll~~~g~~~  255 (534)
                      +|++.+++.   .+. .|+||||+|+..|+.+++++|+++ +.+++.+|..|+|| ||+|+..++.+++++|+++ |+++
T Consensus       147 ~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~  221 (285)
T 3kea_A          147 YFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINI  221 (285)
T ss_dssp             HHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCS
T ss_pred             HHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            999999874   233 899999999999999999999997 66789999999998 9999999999999999995 9999


Q ss_pred             cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457          256 NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR  294 (534)
Q Consensus       256 ~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~  294 (534)
                      +.+|.       .|+.  .++.  +++++|+++|++...
T Consensus       222 ~~~~~-------~a~~--~~~~--~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          222 YSANL-------ENVL--LDDA--EIAKMIIEKHVEYKS  249 (285)
T ss_dssp             TTTTG-------GGGT--TTCH--HHHHHHHHHHHHHTT
T ss_pred             CCCCh-------hhhh--cCCH--HHHHHHHHcCCCCCC
Confidence            99884       2333  5555  999999999998744

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-36  Score=298.54  Aligned_cols=240  Identities=22%  Similarity=0.270  Sum_probs=206.9

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      ..+..|.||||.|+..|+.++|+.|++.+.+             ++..|..|.||||+|+..|+.+++++|++.+  .++
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~   99 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGAD-------------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANI   99 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCT
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCCC-------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence            3455678999999999999999999999876             4567889999999999999999999999987  567


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH  165 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  165 (534)
                      +..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.++++.++.......+..+..+.++++
T Consensus       100 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  178 (299)
T 1s70_B          100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML  178 (299)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH
Confidence            888999999999999999999999999999988 6779999999999999999999999887544334433333444443


Q ss_pred             HHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHH
Q 009457          166 TAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS  245 (534)
Q Consensus       166 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~  245 (534)
                              ..+..++..+.......+..|.||||+|+..|+.+++++|++. +.++|.+|..|+||||+|+..|+.++++
T Consensus       179 --------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~  249 (299)
T 1s70_B          179 --------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACR  249 (299)
T ss_dssp             --------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             --------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence                    3345566666554566778999999999999999999999986 5677999999999999999999999999


Q ss_pred             HHhccCCccccccccCCCCHHHHHHH
Q 009457          246 LLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       246 ~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +|+++ |++++.+|..|+||+|+|.+
T Consensus       250 ~Ll~~-gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          250 ILVEN-LCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHT-TCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            99995 99999999999999999965

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=279.57  Aligned_cols=231  Identities=19%  Similarity=0.236  Sum_probs=206.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      ...|..|.|+||.|++.|+.++++.|++.+.+             ++..+..|.||||+|+..|+.+++++|++.+.. .
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~   68 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD-------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAI-V   68 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC-------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc-c
Confidence            45688899999999999999999999999876             456788999999999999999999999998732 2


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ....+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus        69 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l  146 (240)
T 3eu9_A           69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPL  146 (240)
T ss_dssp             TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHH
Confidence            3344566999999999999999999999999988 67799999999999999999999999999988 677899999999


Q ss_pred             HHHHHcCC-HHHHHHHHhcCCccceecCC-CCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHH
Q 009457          165 HTAARYGL-INIVTALIDRDPEIVTIKDK-KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQ  242 (534)
Q Consensus       165 h~A~~~g~-~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~  242 (534)
                      |+|+..++ .+++++|++.+++. +..+. .|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+
T Consensus       147 ~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~  224 (240)
T 3eu9_A          147 MWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVW  224 (240)
T ss_dssp             HHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            99997776 89999999999984 66665 899999999999999999999997 5667999999999999999999999


Q ss_pred             HHHHHhccCCcc
Q 009457          243 IVSLLLSYTSID  254 (534)
Q Consensus       243 iv~~Ll~~~g~~  254 (534)
                      ++++|++. +.+
T Consensus       225 ~v~~L~~~-~~~  235 (240)
T 3eu9_A          225 MINHLQEA-RQA  235 (240)
T ss_dssp             HHHHHHHH-C--
T ss_pred             HHHHHHHh-hhc
Confidence            99999995 433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.5e-35  Score=276.18  Aligned_cols=218  Identities=18%  Similarity=0.223  Sum_probs=193.9

Q ss_pred             cCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 009457           67 NNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTIL  146 (534)
Q Consensus        67 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll  146 (534)
                      .|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+
T Consensus         1 gg~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            1 GDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ----CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            367888999998863 222345789999999999999999999999999887 677899999999999999999999999


Q ss_pred             hcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccC
Q 009457          147 DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDK  226 (534)
Q Consensus       147 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~  226 (534)
                      +.++...+..+..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++. +.+++.+|.
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~  156 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNN  156 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC
Confidence            998866788899999999999999999999999999988 588899999999999999999999999997 567799999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccc
Q 009457          227 KGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHA  293 (534)
Q Consensus       227 ~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~  293 (534)
                      .|.||||+|+..++.+++++|+++ |++++.+|..|.||+|+|+.  .++.  +++++|++.|+...
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~--~~~~--~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQE--RMHH--DIVRLLDEYNLVRS  218 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH--TTCH--HHHHHHHHTTCSSC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHH--hcch--HHHHHHHHcCCCcc
Confidence            999999999999999999999995 89999999999999999998  7776  99999999999763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.5e-35  Score=275.59  Aligned_cols=215  Identities=20%  Similarity=0.224  Sum_probs=194.7

Q ss_pred             CCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHH
Q 009457           22 GDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAK  101 (534)
Q Consensus        22 G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~  101 (534)
                      |+.+++++|++++.+..            ...|..|.||||+|+..|+.+++++|++.+  .+++..+..|.||||+|+.
T Consensus         2 g~~~~i~~Ll~~g~~~~------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~   67 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLH------------NQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVS   67 (223)
T ss_dssp             ---CCEETTEETTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcc------------cccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHH
Confidence            67888888998887642            335789999999999999999999999987  5677889999999999999


Q ss_pred             cCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 009457          102 KGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID  181 (534)
Q Consensus       102 ~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  181 (534)
                      .|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++
T Consensus        68 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (223)
T 2f8y_A           68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK  146 (223)
T ss_dssp             TTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999866688899999999999999999999999999988 67789999999999999999999999999


Q ss_pred             cCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcc
Q 009457          182 RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID  254 (534)
Q Consensus       182 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~  254 (534)
                      .+++ ++.+|..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|+++ |+.
T Consensus       147 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~  216 (223)
T 2f8y_A          147 NGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLV  216 (223)
T ss_dssp             TTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCS
T ss_pred             cCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccccccCCCHHHHHHHhcchHHHHHHHHc-CCC
Confidence            9998 588999999999999999999999999997 556799999999999999999999999999996 654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.9e-35  Score=286.11  Aligned_cols=224  Identities=11%  Similarity=0.100  Sum_probs=200.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      +..|..|.||||+|++.|+.++++.|++.+.+.             +..  +|.||||+|+..|+.+++++|++++  .+
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g--a~   87 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-------------NLL--ENEFPLHQAATLEDTKIVKILLFSG--LD   87 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-------------SCC--TTCCHHHHHTTSSSCHHHHHHHHTT--CC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-------------CCC--CCCCHHHHHHHcCCHHHHHHHHHCC--CC
Confidence            457889999999999999999999999997653             223  4899999999999999999999987  56


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCc
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSN-TSPLYSAAVQDHLDVVNTILDADVSCTRIVRK-NGKT  162 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g-~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t  162 (534)
                      ++..+..|.||||+|+..|+.+++++|+++++++ +..|..| .||||+|+..|+.+++++|++.+++.   .+. .|.|
T Consensus        88 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t  163 (285)
T 3kea_A           88 DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLS  163 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHH
T ss_pred             CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCcc
Confidence            7788999999999999999999999999999998 6778888 89999999999999999999999874   333 8999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCccceecCCCCchH-HHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH
Q 009457          163 ALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA-LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP  241 (534)
Q Consensus       163 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~  241 (534)
                      |||+|+..|+.+++++|++++++ ++.+|..|+|| ||+|+..|+.+++++|+++ +.+++.+|       +.|+..|+.
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~~~~-------~~a~~~~~~  234 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIYSAN-------LENVLLDDA  234 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCSTTTT-------GGGGTTTCH
T ss_pred             HHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCC-------hhhhhcCCH
Confidence            99999999999999999999998 58899999998 9999999999999999997 56667777       356789999


Q ss_pred             HHHHHHhccCCccccccc
Q 009457          242 QIVSLLLSYTSIDVNAIN  259 (534)
Q Consensus       242 ~iv~~Ll~~~g~~~~~~n  259 (534)
                      +++++|+++ |++++...
T Consensus       235 ~iv~~Ll~~-g~~~~~~~  251 (285)
T 3kea_A          235 EIAKMIIEK-HVEYKSDS  251 (285)
T ss_dssp             HHHHHHHHH-HHHHTTCT
T ss_pred             HHHHHHHHc-CCCCCCcc
Confidence            999999995 88776544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-34  Score=282.41  Aligned_cols=270  Identities=18%  Similarity=0.188  Sum_probs=224.5

Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcH
Q 009457           16 FSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNT   95 (534)
Q Consensus        16 h~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   95 (534)
                      +.+++.|..+.++.++............    ......+..|.||||.|+..|+.++|++|++.+  .+++..+..|.||
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~   76 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVK----RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTA   76 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCC----CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBH
T ss_pred             hhHHHHHHHHHHHHHHcccccccccccc----CcccccccCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCH
Confidence            3578889999999999887654321110    001223457889999999999999999999987  5678889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHH
Q 009457           96 FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI  175 (534)
Q Consensus        96 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i  175 (534)
                      ||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|+.++
T Consensus        77 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~  154 (299)
T 1s70_B           77 LHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEEL  154 (299)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHH
Confidence            99999999999999999999988 77899999999999999999999999999988 66789999999999999999999


Q ss_pred             HHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccc
Q 009457          176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDV  255 (534)
Q Consensus       176 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~  255 (534)
                      ++.++......++..+..+.++++.        .+..++..+.......+..|.||||+|+..|+.+++++|++. |+++
T Consensus       155 ~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~  225 (299)
T 1s70_B          155 LQNEVNRQGVDIEAARKEEERIMLR--------DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDV  225 (299)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCT
T ss_pred             HHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCC
Confidence            9998876443334444444444443        334455555555567788999999999999999999999994 9999


Q ss_pred             cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHh
Q 009457          256 NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELK  306 (534)
Q Consensus       256 ~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  306 (534)
                      +.+|..|.||||+|+.  .++.  +++++|++.|++....+..+.+++++.
T Consensus       226 ~~~d~~g~tpL~~A~~--~~~~--~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          226 NIKDYDGWTPLHAAAH--WGKE--EACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TCCCTTCCCHHHHHHH--TTCH--HHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCcCCCCCcHHHHHHh--cCCH--HHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999  7776  999999999999988777777777765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.4e-35  Score=277.47  Aligned_cols=216  Identities=19%  Similarity=0.260  Sum_probs=183.9

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCChh--hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457           52 MQNDTGETALYISAANNFQDIFSCLLKFCDVE--IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP  129 (534)
Q Consensus        52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp  129 (534)
                      .+|.+|.||||+|+..|+.+++++|++.+...  +++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence            46789999999999999999999999875322  56778889999999999999999999999999887 6788999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCc-----ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC-CCchHHHHHHh
Q 009457          130 LYSAAVQDHLDVVNTILDADVSC-----TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK-KGQTALHMAVK  203 (534)
Q Consensus       130 Lh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~  203 (534)
                      ||+|+..|+.+++++|++.+.+.     .+..+..|.||||+|+..|+.+++++|++.+++ ++.++. .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence            99999999999999999987642     456788899999999999999999999999988 477776 89999999999


Q ss_pred             CCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcccc--ccccCCCCHHHHHHH
Q 009457          204 GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN--AINNQRETAMDLADK  271 (534)
Q Consensus       204 ~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~t~L~lA~~  271 (534)
                      .|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|+++ |++..  ..+.+|.||.+.+..
T Consensus       161 ~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          161 LQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             TTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-SCGGGSSCCCCCTTTCCCCC--
T ss_pred             cCCHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHc-chhhhhcCCccchHHHHhhhcc
Confidence            9999999999986 666799999999999999999999999999995 77765  788899998876654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=4.5e-33  Score=264.21  Aligned_cols=191  Identities=25%  Similarity=0.255  Sum_probs=156.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc-CChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcccc----ccCCCCCCcHH
Q 009457           56 TGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC----KSCDSSNTSPL  130 (534)
Q Consensus        56 ~g~T~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~----~~~d~~g~tpL  130 (534)
                      .|+||||.|+..|+.+++++|++. +  .+++..|..|+||||+|+..|+.+++++|++.+++..    ...|..|.|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTC--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            589999999999999999999987 4  5678889999999999999999999999999998863    34577899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccccc-------------CCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchH
Q 009457          131 YSAAVQDHLDVVNTILDADVSCTRIVRK-------------NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA  197 (534)
Q Consensus       131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  197 (534)
                      |+|+..|+.+++++|++.+++. +..+.             .|.||||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~  157 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            9999999999999999998873 34433             688888888888888888888888777 47778888888


Q ss_pred             HHHHHhCCCHHHH----HHhHhcCcccc-----ccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          198 LHMAVKGQCPSVV----EYILSADHLIL-----NERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       198 Lh~A~~~g~~~iv----~~Ll~~~~~~i-----n~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      ||+|+..|+.+++    ++|++.+....     +.+|..|+||||+|+..|+.+++++|+++
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            8888888887777    77777644321     56777888888888888888888888874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.9e-34  Score=272.47  Aligned_cols=221  Identities=15%  Similarity=0.163  Sum_probs=187.1

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457            4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE   83 (534)
Q Consensus         4 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~   83 (534)
                      ++..|.+|.||||+|++.|+.++++.|++.+....         ..++..|..|.||||+|+..|+.+++++|++.+  .
T Consensus         1 k~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~   69 (236)
T 1ikn_D            1 KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL---------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--C   69 (236)
T ss_dssp             ------CCCCTTHHHHHTTCSSSSSCCCC-----C---------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--C
T ss_pred             CCcCCCCCCchhHHHHHcCChhHHHHHHHHhhccH---------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--C
Confidence            46789999999999999999999999999875321         125678899999999999999999999999987  5


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcc-----ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPE-----LCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRK  158 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~-----l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  158 (534)
                      +++..+..|.||||+|+..|+.+++++|++.+++     .....|..|.||||+|+..|+.+++++|++.+++ .+.++.
T Consensus        70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~  148 (236)
T 1ikn_D           70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEP  148 (236)
T ss_dssp             CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCT
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCC
Confidence            6778899999999999999999999999999864     2467788999999999999999999999999988 556776


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccc-cccccCCCChHHHHHH
Q 009457          159 -NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI-LNERDKKGNTAVHIAT  236 (534)
Q Consensus       159 -~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-in~~d~~g~T~Lh~A~  236 (534)
                       .|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++... ....+..|.||.+.+.
T Consensus       149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          149 CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence             999999999999999999999999999 5899999999999999999999999999976543 2467888888876654


Q ss_pred             H
Q 009457          237 R  237 (534)
Q Consensus       237 ~  237 (534)
                      .
T Consensus       228 ~  228 (236)
T 1ikn_D          228 E  228 (236)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-34  Score=285.94  Aligned_cols=247  Identities=17%  Similarity=0.156  Sum_probs=190.0

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHH-H---hcccCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSEL-M---AMQNDTGETALYISAANNFQDIFSCLLKFCD   81 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~l-l---~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~   81 (534)
                      ..+..|.|+++     |+.++|+.|++++.++....-....... .   ........+.+|+|+..+..++++.|++.+ 
T Consensus        47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g-  120 (327)
T 1sw6_A           47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ-  120 (327)
T ss_dssp             ECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSC-
T ss_pred             cCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcC-
Confidence            45678999988     9999999999998664311000000000 0   001112234468899999999999999886 


Q ss_pred             hhhhhc-cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccccc
Q 009457           82 VEIVKI-RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH---LDVVNTILDADVSCTRIVR  157 (534)
Q Consensus        82 ~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~~~~~~~d  157 (534)
                       .+++. .+..|+||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+   .++++.|++.+....+.+|
T Consensus       121 -~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d  198 (327)
T 1sw6_A          121 -LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  198 (327)
T ss_dssp             -CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             -CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence             56777 7999999999999999999999999999998 6889999999999999998   6778888877644478899


Q ss_pred             cCCCcHHHHHHH----cCCHHHHHHHHhc--------------------CCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457          158 KNGKTALHTAAR----YGLINIVTALIDR--------------------DPEIVTIKDKKGQTALHMAVKGQCPSVVEYI  213 (534)
Q Consensus       158 ~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  213 (534)
                      ..|+||||+|++    .|+.+++++|++.                    +.+ ++.+|..|.||||.|+.      +++|
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~L  271 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWI  271 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHH
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHH
Confidence            999999999999    8999999999987                    566 57889999999999996      8899


Q ss_pred             HhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       214 l~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ++.   ++|.+|.+|+||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|++
T Consensus       272 l~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          272 IAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC
T ss_pred             HHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHh
Confidence            986   4799999999999999999999999999995 99999999999999999976

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.5e-32  Score=260.56  Aligned_cols=194  Identities=15%  Similarity=0.192  Sum_probs=172.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh---h
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDN-LTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI---V   85 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~-~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~---~   85 (534)
                      .|+||||.|++.|+.++++.|++. +.+             ++.+|..|.||||+|+..|+.+++++|++.+....   .
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~   68 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE-------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM   68 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC-------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc
Confidence            589999999999999999999997 544             46788999999999999999999999999873211   1


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCC-------------CCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS-------------SNTSPLYSAAVQDHLDVVNTILDADVSC  152 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~-------------~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  152 (534)
                      +..+..|.||||+|+..|+.+++++|+++++++ +..+.             .|.||||+|+..|+.+++++|++.+++ 
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-  146 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-  146 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            456778999999999999999999999999887 33333             799999999999999999999999988 


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHH----HHHHhcCCccc-----eecCCCCchHHHHHHhCCCHHHHHHhHhcCc
Q 009457          153 TRIVRKNGKTALHTAARYGLINIV----TALIDRDPEIV-----TIKDKKGQTALHMAVKGQCPSVVEYILSADH  218 (534)
Q Consensus       153 ~~~~d~~g~tpLh~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~  218 (534)
                      .+.+|.+|.||||+|+..|+.+++    ++|++.+++..     +.+|..|+||||+|++.|+.+++++|+++++
T Consensus       147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            678999999999999999999988    99999998742     5789999999999999999999999999753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.2e-32  Score=252.30  Aligned_cols=194  Identities=22%  Similarity=0.227  Sum_probs=136.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        54 n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      +..+.||||.|+..|+.+.++.|+..+. .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            3456777777777777777777777642 245666777777777777777777777777777766 55677777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCC-----HH
Q 009457          134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQC-----PS  208 (534)
Q Consensus       134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~  208 (534)
                      +..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..++     .+
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            7777777777777544444566677777777777777777777777777733356677777777777777766     67


Q ss_pred             HHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          209 VVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       209 iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      ++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++
T Consensus       160 ~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          160 IVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            77777775 455577777777777777777777777777764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.2e-32  Score=249.55  Aligned_cols=194  Identities=20%  Similarity=0.236  Sum_probs=180.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      ..+.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            46889999999999999999999999855588899999999999999999999999999988 67789999999999999


Q ss_pred             cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCC-----HHHH
Q 009457          170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR-----PQIV  244 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~-----~~iv  244 (534)
                      .|+.+++++|++.+...++..|..|.||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            99999999999666544688999999999999999999999999998768889999999999999999998     9999


Q ss_pred             HHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcC
Q 009457          245 SLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAG  289 (534)
Q Consensus       245 ~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~g  289 (534)
                      ++|++. |++++.+|..|.||||+|+.  .++.  +++++|+++|
T Consensus       162 ~~Ll~~-ga~~~~~~~~g~t~l~~A~~--~~~~--~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLMEN-GADQSIKDNSGRTAMDYANQ--KGYT--EISKILAQYN  201 (201)
T ss_dssp             HHHHHT-TCCTTCCCTTSCCHHHHHHH--HTCH--HHHHHHHTCC
T ss_pred             HHHHHC-CCCCCccCCCCCCHHHHHHH--cCCH--hHHHHHHhcC
Confidence            999995 99999999999999999999  6776  9999999887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.2e-32  Score=265.19  Aligned_cols=211  Identities=16%  Similarity=0.179  Sum_probs=129.7

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCC--hhhhh----ccCCCCCcHHHHHHHc---CCHHHHHHHHhhCcccc-
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFCD--VEIVK----IRSRSDMNTFHVAAKK---GHLGIAKELVSIWPELC-  119 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~--~~~~~----~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~l~-  119 (534)
                      .+..|..|.||||.|++.|+.++|+.|++.+.  ...++    ..+..|.||||+|+..   |+.+++++|++.+++.. 
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            34578889999999999999999988887421  01111    3477899999999976   89999999999876531 


Q ss_pred             -----c----cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc--------------CCCcHHHHHHHcCCHHHH
Q 009457          120 -----K----SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRK--------------NGKTALHTAARYGLINIV  176 (534)
Q Consensus       120 -----~----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~iv  176 (534)
                           +    ..|..|.||||+|+..|+.+++++|++.+++ .+..+.              .|.||||+|+..|+.+++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                 1    1455777788888777777777777777766 444554              466666666666666666


Q ss_pred             HHHHh---cCCccceecCCCCchHHHHHHhCCC---------HHHHHHhHhcCccccc-------cccCCCChHHHHHHH
Q 009457          177 TALID---RDPEIVTIKDKKGQTALHMAVKGQC---------PSVVEYILSADHLILN-------ERDKKGNTAVHIATR  237 (534)
Q Consensus       177 ~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~in-------~~d~~g~T~Lh~A~~  237 (534)
                      ++|++   .+.+ ++.+|..|+||||+|+..|+         .+++++|++. +.++|       .+|..|+||||+|+.
T Consensus       165 ~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          165 KFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             HHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHH
Confidence            66666   5555 35566666666666666555         5566666654 22232       356666666666666


Q ss_pred             cCCHHHHHHHhccCCc-cccccccCCCC
Q 009457          238 KCRPQIVSLLLSYTSI-DVNAINNQRET  264 (534)
Q Consensus       238 ~~~~~iv~~Ll~~~g~-~~~~~n~~g~t  264 (534)
                      .|+.+++++|+++ |+ |+......+.+
T Consensus       243 ~g~~~iv~~Ll~~-ga~dp~~~~~~~~~  269 (273)
T 2pnn_A          243 SGKIGVLAYILQR-EIHEPECRHAAAHH  269 (273)
T ss_dssp             TTCHHHHHHHHHH-HTC-----------
T ss_pred             hChHHHHHHHHHC-CCCCchhhhhhhhh
Confidence            6666666666664 44 44444444433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.8e-32  Score=262.90  Aligned_cols=221  Identities=19%  Similarity=0.271  Sum_probs=171.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCC
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDIFSCLLKFCD   81 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~---g~~~iv~~Ll~~~~   81 (534)
                      +..|..|.||||.|++.|+.++|+.|++.+.+....     +.......+..|.||||+|+..   |+.++|++|++.+.
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-----LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-----TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccc-----cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            457889999999999999999999999854321100     0001124578999999999987   99999999999852


Q ss_pred             hh-----hhhc----cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCC--------------CCCcHHHHHHHcCC
Q 009457           82 VE-----IVKI----RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDS--------------SNTSPLYSAAVQDH  138 (534)
Q Consensus        82 ~~-----~~~~----~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~--------------~g~tpLh~Aa~~g~  138 (534)
                      ..     .++.    .|..|.||||+|+..|+.+++++|+++++++ +..+.              .|.||||+|+..|+
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCC
Confidence            10     0222    4568999999999999999999999999988 45554              79999999999999


Q ss_pred             HHHHHHHHh---cCCCcccccccCCCcHHHHHHHcCC---------HHHHHHHHhcCCccc------eecCCCCchHHHH
Q 009457          139 LDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGL---------INIVTALIDRDPEIV------TIKDKKGQTALHM  200 (534)
Q Consensus       139 ~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~g~t~Lh~  200 (534)
                      .+++++|++   .+++ .+.+|.+|+||||+|++.|+         .+++++|++.++++-      +.+|..|+||||+
T Consensus       161 ~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence            999999999   7887 67899999999999999998         899999999988742      3589999999999


Q ss_pred             HHhCCCHHHHHHhHhcCccccccccCCCChHH
Q 009457          201 AVKGQCPSVVEYILSADHLILNERDKKGNTAV  232 (534)
Q Consensus       201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~L  232 (534)
                      |++.|+.+++++|++++..++......+.+|-
T Consensus       240 A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          240 AASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            99999999999999987656666666665553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.3e-31  Score=258.29  Aligned_cols=206  Identities=20%  Similarity=0.189  Sum_probs=128.8

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCCh
Q 009457           10 ITHQSFFSAVRSGDLE----TLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDIFSCLLKFCDV   82 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~----~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~---g~~~iv~~Ll~~~~~   82 (534)
                      .|+||||.|++.|+.+    +++++++.+.+...         .....|..|.||||+|+..   |+.+++++|++.+  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~---------~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--   69 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTD---------SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--   69 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTS---------GGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCccc---------ccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--
Confidence            4889999999999998    55666667665320         0012788999999999999   9999999999875  


Q ss_pred             hhhh-----------ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457           83 EIVK-----------IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS  151 (534)
Q Consensus        83 ~~~~-----------~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  151 (534)
                      .+.+           ..|..|.||||+|+..|+.+++++|+++++++ +..|..+.++                    .+
T Consensus        70 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~--------------------~~  128 (256)
T 2etb_A           70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQ--------------------KH  128 (256)
T ss_dssp             HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGS--------------------CC
T ss_pred             CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Cccccccccc--------------------cc
Confidence            2222           12356888888888888888888888887776 4444441110                    00


Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHh---cCCccceecCCCCchHHHHHHh--CCCHH-------HHHHhHhcCcc
Q 009457          152 CTRIVRKNGKTALHTAARYGLINIVTALID---RDPEIVTIKDKKGQTALHMAVK--GQCPS-------VVEYILSADHL  219 (534)
Q Consensus       152 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~  219 (534)
                       ....+..|.||||+|+..|+.+++++|++   .+++ ++.+|..|+||||+|+.  .++.+       ++++|++. +.
T Consensus       129 -~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga  205 (256)
T 2etb_A          129 -QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GA  205 (256)
T ss_dssp             -SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HH
T ss_pred             -ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CC
Confidence             11122235555555555555555555555   4444 34555555555555555  44554       55555554 23


Q ss_pred             cc-------ccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          220 IL-------NERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       220 ~i-------n~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      ++       +.+|..|+||||+|+..|+.+++++|+++
T Consensus       206 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             HHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            33       55666666666666666666666666663

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.9e-31  Score=257.05  Aligned_cols=130  Identities=26%  Similarity=0.321  Sum_probs=108.4

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCC-------------CCchHHHHHHhCCCHHHHHHhHhc--Cccccc
Q 009457          158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDK-------------KGQTALHMAVKGQCPSVVEYILSA--DHLILN  222 (534)
Q Consensus       158 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~~in  222 (534)
                      ..|.||||+|+..|+.+++++|++.+++ ++..|.             .|+||||+|+..|+.+++++|++.  .+.++|
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n  166 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE  166 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC
Confidence            4566666666666666666666666655 344444             399999999999999999999994  467789


Q ss_pred             cccCCCChHHHHHHH--cCCHH-------HHHHHhccCCccc-------cccccCCCCHHHHHHHccCCCCHHHHHHHHH
Q 009457          223 ERDKKGNTAVHIATR--KCRPQ-------IVSLLLSYTSIDV-------NAINNQRETAMDLADKLQYGDSTLEIKEALA  286 (534)
Q Consensus       223 ~~d~~g~T~Lh~A~~--~~~~~-------iv~~Ll~~~g~~~-------~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~  286 (534)
                      .+|.+|+||||+|+.  .++.+       ++++|+++ |+++       +.+|..|+||||+|+.  .++.  +++++|+
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~--~g~~--~~v~~Ll  241 (256)
T 2etb_A          167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAK--EGKI--EIFRHIL  241 (256)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHH--TTCH--HHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHH--hCCH--HHHHHHH
Confidence            999999999999998  78888       99999995 9999       9999999999999999  7777  9999999


Q ss_pred             HcCCccc
Q 009457          287 EAGAKHA  293 (534)
Q Consensus       287 ~~ga~~~  293 (534)
                      ++|++..
T Consensus       242 ~~g~~~~  248 (256)
T 2etb_A          242 QREFSGA  248 (256)
T ss_dssp             HHHHHHH
T ss_pred             hCCCCCC
Confidence            9998763

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-32  Score=275.92  Aligned_cols=259  Identities=14%  Similarity=0.146  Sum_probs=200.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc--
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI--   87 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~--   87 (534)
                      .+.+|+|    ....+++++|++++.+             ++..+..|.|+++     |+.++|+.|++.+  .+.+.  
T Consensus        22 ~~~~~~~----~~~~dlv~~ll~~ga~-------------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g--~~~~~~~   77 (327)
T 1sw6_A           22 RTAGPII----TFTHDLTSDFLSSPLK-------------IMKALPSPVVNDN-----EQKMKLEAFLQRL--LFPEIQE   77 (327)
T ss_dssp             ---CCEE----ECCTTCCCSTTTSSCC-------------CEECBCCCCCCCH-----HHHHHHHHHHHHH--HC-----
T ss_pred             ccccchh----hhcCchHHHHhhCCcc-------------cccCCCCCCcccC-----chhHHHHHHHHhc--cCCcccc
Confidence            3444555    4666789999998876             4678889999988     9999999999875  21111  


Q ss_pred             ---------------cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q 009457           88 ---------------RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSC  152 (534)
Q Consensus        88 ---------------~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  152 (534)
                                     ......+.+|+|+..+..+++++|++.+.++....|..|.||||+|+..|+.+++++|++.+++ 
T Consensus        78 ~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-  156 (327)
T 1sw6_A           78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-  156 (327)
T ss_dssp             --------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             chHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-
Confidence                           0111123458888888889999999999998433899999999999999999999999999988 


Q ss_pred             ccccccCCCcHHHHHHHcCC---HHHHHHHHhcCCccceecCCCCchHHHHHHh----CCCHHHHHHhHhcC--------
Q 009457          153 TRIVRKNGKTALHTAARYGL---INIVTALIDRDPEIVTIKDKKGQTALHMAVK----GQCPSVVEYILSAD--------  217 (534)
Q Consensus       153 ~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~iv~~Ll~~~--------  217 (534)
                      ++.+|.+|+||||+|+..|+   .++++.|++.+...++.+|..|+||||+|+.    .|+.+++++|++..        
T Consensus       157 ~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~  236 (327)
T 1sw6_A          157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ  236 (327)
T ss_dssp             TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc
Confidence            67899999999999999998   6888888887644468899999999999999    99999999999753        


Q ss_pred             -----------ccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHH
Q 009457          218 -----------HLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALA  286 (534)
Q Consensus       218 -----------~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~  286 (534)
                                 +.+++.+|..|.||||.|+.      +++|++.   +++.+|..|+||||+|+.  .++.  +++++|+
T Consensus       237 ~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~--~g~~--~~v~~Ll  303 (327)
T 1sw6_A          237 NRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAAR--LGNI--SIVDALL  303 (327)
T ss_dssp             GCCEEEC----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHH--HCCH--HHHHHHH
T ss_pred             chHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHH--cCCH--HHHHHHH
Confidence                       56779999999999999985      8889885   689999999999999999  7776  9999999


Q ss_pred             HcCCccccccCChhhHHHHh
Q 009457          287 EAGAKHARYVGQVDEAMELK  306 (534)
Q Consensus       287 ~~ga~~~~~~~~~~~~~~~~  306 (534)
                      +.|++....+..+.+++++.
T Consensus       304 ~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          304 DYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             HTTCCTTCCCTTSCCGGGGT
T ss_pred             HcCCCCcccCCCCCCHHHHH
Confidence            99999988777777776653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.7e-30  Score=231.66  Aligned_cols=157  Identities=27%  Similarity=0.393  Sum_probs=97.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q 009457           95 TFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLIN  174 (534)
Q Consensus        95 ~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  174 (534)
                      +|+.|++.|+.++|+.|+++++++ +.+|..|.||||+|+..++.+++++|++.+++ .+.+|.+|+||||+|+..|+.+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCHH
Confidence            466666666666666666666665 45566666666666666666666666666665 4456666666666666666666


Q ss_pred             HHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcc
Q 009457          175 IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID  254 (534)
Q Consensus       175 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~  254 (534)
                      ++++|++.+++ ++.+|..|+||||+|++.|+.+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|+++ |++
T Consensus        85 ~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GA~  161 (169)
T 4gpm_A           85 VVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-GGW  161 (169)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            66666666666 356666666666666666666666666664 344566666666666666666666666666663 555


Q ss_pred             cc
Q 009457          255 VN  256 (534)
Q Consensus       255 ~~  256 (534)
                      +.
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4.2e-30  Score=231.29  Aligned_cols=156  Identities=23%  Similarity=0.343  Sum_probs=91.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      ++|+.||+.|+.++|+.||+.+.+             ++.+|..|.||||+|+..|+.++++.|++.+  .+++.+|..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g   70 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-------------VNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDG   70 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCC
Confidence            346666666666666666665554             2445556666666666666666666666554  3445555566


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL  172 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  172 (534)
                      +||||+|+..|+.+++++|+++++++ +.+|.+|.||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|++.|+
T Consensus        71 ~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           71 RTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC
Confidence            66666666666666666666666555 45555666666666666666666666666555 44555566666666666666


Q ss_pred             HHHHHHHHhcCCc
Q 009457          173 INIVTALIDRDPE  185 (534)
Q Consensus       173 ~~iv~~Ll~~~~~  185 (534)
                      .+++++|+++|++
T Consensus       149 ~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          149 EEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHCCCC
Confidence            6666666666555

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.9e-31  Score=255.46  Aligned_cols=198  Identities=16%  Similarity=0.207  Sum_probs=123.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHH----hcCCCCCCCCcchHHHHHhcccCCCCcHHHHHH---HcCCHHHHHHHHhcC
Q 009457            8 RFITHQSFFSAVRSGDLETLKNIID----NLTKDEAPDGSSLVSELMAMQNDTGETALYISA---ANNFQDIFSCLLKFC   80 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~----~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa---~~g~~~iv~~Ll~~~   80 (534)
                      +..+.|+||.|++.|+.+.++.|++    .+.+....         -...+..|.||||+|+   +.|+.+++++|++.+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~---------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g   72 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE---------EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA   72 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh---------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence            5678999999999999997666666    66553210         0123477999999999   779999999999975


Q ss_pred             Ch---------hhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCC--------------CCCCcHHHHHHHcC
Q 009457           81 DV---------EIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCD--------------SSNTSPLYSAAVQD  137 (534)
Q Consensus        81 ~~---------~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d--------------~~g~tpLh~Aa~~g  137 (534)
                      ..         ......|..|.||||+|+..|+.+++++|+++++++ +..|              ..|.||||+|+..|
T Consensus        73 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  151 (260)
T 3jxi_A           73 EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTN  151 (260)
T ss_dssp             HHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred             ccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcC
Confidence            21         112223446778888888888888888888777776 3444              34555555555555


Q ss_pred             CHHHHHHHHh---cCCCcccccccCCCcHHHHHHHcCC---------HHHHHHHHhcCCccc------eecCCCCchHHH
Q 009457          138 HLDVVNTILD---ADVSCTRIVRKNGKTALHTAARYGL---------INIVTALIDRDPEIV------TIKDKKGQTALH  199 (534)
Q Consensus       138 ~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~d~~g~t~Lh  199 (534)
                      +.+++++|++   .+++ .+.+|..|+||||+|+..|+         .+++++|++.++++.      +.+|..|+||||
T Consensus       152 ~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          152 QPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             CHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHH
Confidence            5555555555   4444 34455555555555555544         455555555544420      234444555555


Q ss_pred             HHHhCCCHHHHHHhHhc
Q 009457          200 MAVKGQCPSVVEYILSA  216 (534)
Q Consensus       200 ~A~~~g~~~iv~~Ll~~  216 (534)
                      +|++.|+.+++++|+++
T Consensus       231 ~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          231 MAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHh
Confidence            55555555555555443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=8.6e-31  Score=253.04  Aligned_cols=131  Identities=24%  Similarity=0.328  Sum_probs=91.4

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecC--------------CCCchHHHHHHhCCCHHHHHHhHhc--Ccc
Q 009457          156 VRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKD--------------KKGQTALHMAVKGQCPSVVEYILSA--DHL  219 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~  219 (534)
                      .|..|.||||+|+..|+.+++++|++.+++ ++..+              ..|+||||+|+..|+.+++++|++.  .+.
T Consensus        89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  167 (260)
T 3jxi_A           89 VYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA  167 (260)
T ss_dssp             SSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence            344666666666666666666666666666 35555              4677777777777777777777773  355


Q ss_pred             ccccccCCCChHHHHHHHcCC---------HHHHHHHhccCCccc-------cccccCCCCHHHHHHHccCCCCHHHHHH
Q 009457          220 ILNERDKKGNTAVHIATRKCR---------PQIVSLLLSYTSIDV-------NAINNQRETAMDLADKLQYGDSTLEIKE  283 (534)
Q Consensus       220 ~in~~d~~g~T~Lh~A~~~~~---------~~iv~~Ll~~~g~~~-------~~~n~~g~t~L~lA~~~~~~~~~~~i~~  283 (534)
                      +++.+|..|+||||+|+..++         .+++++|++. |+++       +.+|..|.||||+|+.  .++.  ++++
T Consensus       168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~--~g~~--~~v~  242 (260)
T 3jxi_A          168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAK--TGKI--GIFQ  242 (260)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH--TTCH--HHHH
T ss_pred             CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHH--cCCH--HHHH
Confidence            667777777777777777666         5777777774 6776       5677777777777777  6665  7777


Q ss_pred             HHHHcCCcc
Q 009457          284 ALAEAGAKH  292 (534)
Q Consensus       284 ~L~~~ga~~  292 (534)
                      +|+++|++.
T Consensus       243 ~Ll~~g~~~  251 (260)
T 3jxi_A          243 HIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhCCCc
Confidence            777777655

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=252.89  Aligned_cols=193  Identities=19%  Similarity=0.248  Sum_probs=122.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH--
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA--  134 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa--  134 (534)
                      +.+++|.|+..|+.+.++.+++......++..|..|+||||+|+..|+.+++++|++.++...+..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            455666666666666666666554333355566666666666666666666666666666333556666666666666  


Q ss_pred             ---HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457          135 ---VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE  211 (534)
Q Consensus       135 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  211 (534)
                         ..++.+++++|++.+.. ....+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               44566666666666644 344556666666666666666666666666666 3666666666666666666666666


Q ss_pred             HhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC
Q 009457          212 YILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT  251 (534)
Q Consensus       212 ~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~  251 (534)
                      +|++..+.+++.+|.+|+||||+|+..|+.+++++|+++.
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            6666445555666666666666666666666666666643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=245.94  Aligned_cols=192  Identities=18%  Similarity=0.249  Sum_probs=176.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      ..+++|.|+..|+.+.++.+++...           ...++..|..|.||||+|+..|+.++|++|++.+. .+++..+.
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~-----------~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~  143 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLL-----------DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNR  143 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHH-----------HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-CCTTCCCT
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHH-----------hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CcCCCCCC
Confidence            4578899999999999999998764           45688999999999999999999999999999873 25778899


Q ss_pred             CCCcHHHHHH-----HcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHH
Q 009457           91 SDMNTFHVAA-----KKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALH  165 (534)
Q Consensus        91 ~g~t~Lh~Aa-----~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh  165 (534)
                      .|.||||+|+     ..++.+++++|++.+... ...|..|.||||+|+..|+.+++++|++.+++ .+.+|.+|+||||
T Consensus       144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh  221 (276)
T 4hbd_A          144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALM  221 (276)
T ss_dssp             TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHH
Confidence            9999999999     678999999999999766 67788999999999999999999999999998 6789999999999


Q ss_pred             HHHHcCCHHHHHHHHh-cCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457          166 TAARYGLINIVTALID-RDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD  217 (534)
Q Consensus       166 ~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~  217 (534)
                      +|+..|+.+++++|++ .+++ ++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       222 ~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          222 CACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999 7888 5889999999999999999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.6e-29  Score=224.20  Aligned_cols=170  Identities=24%  Similarity=0.288  Sum_probs=121.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      +.||||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            356777777777777777777777765566777777777777777777777777777766 5566777777777777777


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT  251 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~  251 (534)
                      +.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+++ 
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-  157 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENH-  157 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH-
Confidence            77777777777777 467777777888888877788888877775 455677777788888888888888888888774 


Q ss_pred             CccccccccCCCCH
Q 009457          252 SIDVNAINNQRETA  265 (534)
Q Consensus       252 g~~~~~~n~~g~t~  265 (534)
                      ++++...|..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            77777777777665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.5e-28  Score=226.16  Aligned_cols=161  Identities=19%  Similarity=0.244  Sum_probs=86.8

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcH
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP  129 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tp  129 (534)
                      ++.+|..|.||||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~  104 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTP  104 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcH
Confidence            4445555555555555555555555555543  234444555555555555555555555555555554 3445555555


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHH
Q 009457          130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSV  209 (534)
Q Consensus       130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i  209 (534)
                      ||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHH
Confidence            5555555555555555555544 344455555555555555555555555555554 34455555555555555555555


Q ss_pred             HHHhHh
Q 009457          210 VEYILS  215 (534)
Q Consensus       210 v~~Ll~  215 (534)
                      +++|++
T Consensus       183 v~~Ll~  188 (192)
T 2rfm_A          183 IKIFTE  188 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.6e-28  Score=220.32  Aligned_cols=169  Identities=22%  Similarity=0.194  Sum_probs=88.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC
Q 009457           58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD  137 (534)
Q Consensus        58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g  137 (534)
                      .||||.|+..|+.++++.|++.+. ..++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGD-NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCS-GGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCc-ccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            345555555555555555555432 224444555555555555555555555555555554 444555555555555555


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457          138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD  217 (534)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~  217 (534)
                      +.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            55555555555555 344555555555555555555555555555555 3555555555565555555555555555542


Q ss_pred             ccccccccCCCChH
Q 009457          218 HLILNERDKKGNTA  231 (534)
Q Consensus       218 ~~~in~~d~~g~T~  231 (534)
                       ..+...+..|.||
T Consensus       159 -~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 -LKLFQSNLVPADP  171 (172)
T ss_dssp             -HHHSCC-------
T ss_pred             -HHHhcccCCCCCC
Confidence             2234444444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.2e-28  Score=216.48  Aligned_cols=154  Identities=23%  Similarity=0.237  Sum_probs=73.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcC
Q 009457           58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD  137 (534)
Q Consensus        58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g  137 (534)
                      .||||.|+..|+.+++++|++.+  .+++..+..|+||||+|+. |+.+++++|++.++++ +..|..|.||||+|+..|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            34444444444444444444433  2233444444444444444 4444444444444444 334444445555555444


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      +.+++++|++.+.+ .+.+|.+|.||||+|++.|+.+++++|++.+++.++..|..|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            45555555444444 3344444555555555555555555555544443344444455555555555555555555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.9e-28  Score=216.04  Aligned_cols=159  Identities=23%  Similarity=0.348  Sum_probs=138.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY  170 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  170 (534)
                      ...||||.|+..|+.+++++|++.++++ +..|..|.||||+|+. |+.+++++|++.+.+ .+.+|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            4568999999999999999999988887 6778899999999988 999999999998877 567888899999999999


Q ss_pred             CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      |+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+...++.+|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999888 5788889999999999999999999999887766788899999999999999999999999885


Q ss_pred             CCcc
Q 009457          251 TSID  254 (534)
Q Consensus       251 ~g~~  254 (534)
                       |++
T Consensus       160 -GAd  162 (162)
T 1ihb_A          160 -GAG  162 (162)
T ss_dssp             -C--
T ss_pred             -CCC
Confidence             653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=6.4e-28  Score=221.85  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=136.2

Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      .+.+|..|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHH
Confidence            4557788888999999888888899888888776 66788888888888888888888888888877 567788888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHH
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIV  244 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv  244 (534)
                      |+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence            888888888888888888887 477888888888888888888888888886 556688888888888888888888888


Q ss_pred             HHHhcc
Q 009457          245 SLLLSY  250 (534)
Q Consensus       245 ~~Ll~~  250 (534)
                      ++|+++
T Consensus       184 ~~Ll~~  189 (192)
T 2rfm_A          184 KIFTEV  189 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            888874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=7.9e-28  Score=215.98  Aligned_cols=159  Identities=18%  Similarity=0.232  Sum_probs=93.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS   89 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   89 (534)
                      .|.||||.|++.|+.++++.|++.+.+             ++..|..|.||||+|+..|+.+++++|++.+  .+++..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~   66 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLG   66 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcC
Confidence            355666666666666666666665443             3345556666666666666666666666654  3344555


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      ..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+.
T Consensus        67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           67 KGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            55666666666666666666666665555 44555566666666666666666666665555 34455556666666666


Q ss_pred             cCCHHHHHHHHhcCCc
Q 009457          170 YGLINIVTALIDRDPE  185 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~  185 (534)
                      .|+.+++++|++++++
T Consensus       145 ~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          145 LGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHH
Confidence            6666666666555443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=6.7e-31  Score=266.31  Aligned_cols=236  Identities=18%  Similarity=0.224  Sum_probs=135.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh-hhhh
Q 009457            8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDV-EIVK   86 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~   86 (534)
                      +.++.||||.|++.|+.++|+.|++.+....          .....|..|.||||+|+..|+.++|++|++++.. ...+
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~----------~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~  158 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDE----------IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM  158 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCS----------SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHH----------HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc
Confidence            4455677777777777777777777665211          0112334456777777777777777777777621 1112


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccc-cCCCCCCcHHHHHH-HcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           87 IRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCK-SCDSSNTSPLYSAA-VQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        87 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~-~~d~~g~tpLh~Aa-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ..+.+ .||||+|+..|+.+++++|+++++++.. ..|..|.||||+|+ ..|+.+++++|++.++        .|.|||
T Consensus       159 i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL  229 (376)
T 2aja_A          159 IQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAE  229 (376)
T ss_dssp             HSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHH
T ss_pred             cCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHH
Confidence            22222 7777777777777777777777776522 14666777777777 7777777777777442        266777


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHH---------------------------HHHHhHhcC
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPS---------------------------VVEYILSAD  217 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~---------------------------iv~~Ll~~~  217 (534)
                      |.|+..|+.+++++|++.+++. +..+    ++++.|+.+|+.+                           .+++|++..
T Consensus       230 ~~Aa~~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~  304 (376)
T 2aja_A          230 IHEFEYGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  304 (376)
T ss_dssp             HCTTTTTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             HHHHHCCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence            7777777777777777776553 2221    2444555444444                           223333211


Q ss_pred             cc--c--cccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          218 HL--I--LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       218 ~~--~--in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      ..  .  ....++.++||||+|+..|+.+++++|++. |   ...+..|+|++++|..
T Consensus       305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~-~---~v~~~~~~~~~~~~~~  358 (376)
T 2aja_A          305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-P---SVLALTKANNYYINET  358 (376)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS-H---HHHHSCC---------
T ss_pred             hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC-h---HHHHHHHHhccccccc
Confidence            00  0  011233466777777777777777777764 2   4566677777777765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=9e-28  Score=215.62  Aligned_cols=154  Identities=21%  Similarity=0.260  Sum_probs=76.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..+..|.||||+|+..|
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcC
Confidence            444555555555555555555444443 34444455555555555555555555554444 3344444555555555555


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS  249 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~  249 (534)
                      +.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            55555555555444 244455555555555555555555555543 33344455555555555555555555555554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=2.6e-27  Score=213.26  Aligned_cols=157  Identities=25%  Similarity=0.360  Sum_probs=97.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457           55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA  134 (534)
Q Consensus        55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa  134 (534)
                      ..+.|||+.|++.|+.++|++|++.+  .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA   88 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            34456666666666666666666654  334555566666666666666666666666666555 455566666666666


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      ..|+.+++++|++.+++ .+..|..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|++.|+.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            66666666666666655 445566666666666666666666666666665 3556666666666666666666666666


Q ss_pred             hc
Q 009457          215 SA  216 (534)
Q Consensus       215 ~~  216 (534)
                      +.
T Consensus       167 ~~  168 (169)
T 2y1l_E          167 KL  168 (169)
T ss_dssp             TC
T ss_pred             Hc
Confidence            53

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.7e-27  Score=212.21  Aligned_cols=159  Identities=26%  Similarity=0.356  Sum_probs=147.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      ....+.++||.|++.|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLA   87 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence            4566789999999999999999999999988 67899999999999999999999999999988 677899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      +..|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|
T Consensus        88 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            999999999999999998 588999999999999999999999999997 566799999999999999999999999999


Q ss_pred             hcc
Q 009457          248 LSY  250 (534)
Q Consensus       248 l~~  250 (534)
                      +++
T Consensus       166 ~~~  168 (169)
T 2y1l_E          166 QKL  168 (169)
T ss_dssp             HTC
T ss_pred             HHc
Confidence            985

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.6e-30  Score=246.49  Aligned_cols=187  Identities=16%  Similarity=0.089  Sum_probs=117.9

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS  132 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~  132 (534)
                      .+..|.||||.|+..|+.++|++|++.+  .+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~   93 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHC   93 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence            3455666777777777777777777665  345566666777777777777777777777776665 5556667777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH--HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHH
Q 009457          133 AAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA--ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV  210 (534)
Q Consensus       133 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv  210 (534)
                      |+..|+.+++++|++.+++.....+.+|.||||+|  +..|+.+++++|++.+++ ++..|..|.||+|.++..+..   
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---  169 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---  169 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---
Confidence            77777777777777766663322235677777776  666777777777776666 355666666666654443322   


Q ss_pred             HHhHhcCcc-ccccccCCCChHHHHHHHcCCHHHHHH
Q 009457          211 EYILSADHL-ILNERDKKGNTAVHIATRKCRPQIVSL  246 (534)
Q Consensus       211 ~~Ll~~~~~-~in~~d~~g~T~Lh~A~~~~~~~iv~~  246 (534)
                      ++|++.+.. .++.+|.+|+||||+|+..|+.++++.
T Consensus       170 ~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          170 ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             ccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            344443222 145666666666666666666666544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.1e-26  Score=205.51  Aligned_cols=150  Identities=20%  Similarity=0.249  Sum_probs=79.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCC
Q 009457           12 HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRS   91 (534)
Q Consensus        12 ~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~   91 (534)
                      .|+||.|++.|+.++++.|++.+.+..              .+..|.||||+|+..|+.+++++|++.+  .+++..+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~   66 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--------------CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--------------cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCC
Confidence            355555555555555555555554311              2445555555555555555555555544  334444555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|
T Consensus        67 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcC
Confidence            555555555555555555555555554 34455555555555555555555555555544 3344555555555555555


Q ss_pred             CHHHHHHH
Q 009457          172 LINIVTAL  179 (534)
Q Consensus       172 ~~~iv~~L  179 (534)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            55555543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.1e-27  Score=214.73  Aligned_cols=164  Identities=19%  Similarity=0.211  Sum_probs=83.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      +.++||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+++ .+..|..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence            445555555555555555555554443344455555555555555555555555555544 3344555555555555555


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT  251 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~  251 (534)
                      +.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..++.+++++|++. 
T Consensus        84 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~-  160 (179)
T 3f6q_A           84 HRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKM-  160 (179)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh-
Confidence            55555555555554 244455555555555555555555555543 333455555555555555555555555555552 


Q ss_pred             Cccccccc
Q 009457          252 SIDVNAIN  259 (534)
Q Consensus       252 g~~~~~~n  259 (534)
                      |++++..+
T Consensus       161 g~~~~~~~  168 (179)
T 3f6q_A          161 GQNLNRIP  168 (179)
T ss_dssp             TCCCSCBC
T ss_pred             hcCcccCC
Confidence            44444433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1e-26  Score=205.66  Aligned_cols=150  Identities=29%  Similarity=0.298  Sum_probs=89.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL  172 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  172 (534)
                      .|+||.|+..|+.+++++|++.+++..  .|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence            355666666666666666666555442  355566666666666666666666665555 34455556666666666666


Q ss_pred             HHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          173 INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       173 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      .+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            6666666666555 355566666666666666666666666654 344456666666666666666666666554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=7.6e-27  Score=206.96  Aligned_cols=152  Identities=20%  Similarity=0.335  Sum_probs=83.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL  172 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  172 (534)
                      .||||.|+..|+.+++++|++..+...+..|..|.||||+ +..|+.+++++|++.+++ .+.+|..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCc
Confidence            3455555555555555555555222224445555555555 555555555555555554 34455555555555555555


Q ss_pred             HHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457          173 INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS  249 (534)
Q Consensus       173 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~  249 (534)
                      .+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.  .+++.+|.+|.||||+|+..|+.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            5555555555555 355555555555555555555555555554  4445555556666666666666666655554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=8.9e-27  Score=206.53  Aligned_cols=154  Identities=21%  Similarity=0.255  Sum_probs=143.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      |.||||.|+..|+.+++++|++. ...+++..+..|.||||+ +..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            56999999999999999999998 334677889999999999 9999999999999999988 77899999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      |+.+++++|++.+++ .+.+|.+|.||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           79 GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999988 678899999999999999999999999999 66 588999999999999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.5e-27  Score=211.29  Aligned_cols=158  Identities=17%  Similarity=0.204  Sum_probs=104.6

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        54 n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      |.+|.||||.|++.|+.++++.|++.+. ......+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            4556667777777777777777666432 234445556667777777777777777777766665 55566677777777


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457          134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI  213 (534)
Q Consensus       134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  213 (534)
                      +..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|++ ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHH
Confidence            777777777777776666 455666677777777777777777777777666 46667777777777555 666777777


Q ss_pred             Hhc
Q 009457          214 LSA  216 (534)
Q Consensus       214 l~~  216 (534)
                      ++.
T Consensus       160 ~~~  162 (165)
T 3twr_A          160 RGD  162 (165)
T ss_dssp             HTC
T ss_pred             hhc
Confidence            664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.1e-29  Score=238.74  Aligned_cols=192  Identities=16%  Similarity=0.100  Sum_probs=168.5

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457            4 LKSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE   83 (534)
Q Consensus         4 ~~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~   83 (534)
                      ....+.++.||||.|++.|+.++++.|++.+.+             ++.+|..|.||||+|+..|+.+++++|++.+  .
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g--a   78 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMND-------------PSQPNEEGITALHNAICGANYSIVDFLITAG--A   78 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--C
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--C
Confidence            345677888999999999999999999999876             4568899999999999999999999999987  6


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH--HHcCCHHHHHHHHhcCCCcccccccCCC
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA--AVQDHLDVVNTILDADVSCTRIVRKNGK  161 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~  161 (534)
                      +++..|..|.||||+|+..|+.+++++|++.++++....+..|.||||+|  +..|+.+++++|++.+++ .+..|..|.
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~  157 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV  157 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence            67888999999999999999999999999999998544457999999999  999999999999999988 667889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCcc-ceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          162 TALHTAARYGLINIVTALIDRDPEI-VTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       162 tpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      ||++.++..+.   .+.|++.+++. ++.+|..|+||||+|+..|+.++|+..+
T Consensus       158 ~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          158 YALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             EESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            99997665543   36778888763 4678999999999999999999987654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=6.4e-27  Score=209.59  Aligned_cols=159  Identities=22%  Similarity=0.303  Sum_probs=146.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      .|..|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence            4677899999999999999999999987766677888999999999999999999999999988 678899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      +..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|.. ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence            999999999999999998 588999999999999999999999999997 56679999999999999877 899999999


Q ss_pred             hcc
Q 009457          248 LSY  250 (534)
Q Consensus       248 l~~  250 (534)
                      ++.
T Consensus       160 ~~~  162 (165)
T 3twr_A          160 RGD  162 (165)
T ss_dssp             HTC
T ss_pred             hhc
Confidence            985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.3e-26  Score=210.67  Aligned_cols=159  Identities=17%  Similarity=0.237  Sum_probs=80.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      +.++||.|++.|+.++++.|++..+..            ++..+..|.||||+|+..|+.+++++|++.+  .+++..+.
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~   70 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTEND------------LNQGDDHGFSPLHWACREGRSAVVEMLIMRG--ARINVMNR   70 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCccc------------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCCcCC
Confidence            445555555555555555555543221            2334445555555555555555555555544  33444455


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY  170 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  170 (534)
                      .|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           71 GDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHH
Confidence            5555555555555555555555555544 34445555555555555555555555555544 344455555555555555


Q ss_pred             CCHHHHHHHHhcCCc
Q 009457          171 GLINIVTALIDRDPE  185 (534)
Q Consensus       171 g~~~iv~~Ll~~~~~  185 (534)
                      ++.+++++|++.+++
T Consensus       149 ~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A          149 LRELLRERAEKMGQN  163 (179)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhcC
Confidence            555555555555544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=9.1e-29  Score=250.63  Aligned_cols=238  Identities=18%  Similarity=0.179  Sum_probs=174.9

Q ss_pred             HHHHHHH-cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh-hhhccCCC
Q 009457           14 SFFSAVR-SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE-IVKIRSRS   91 (534)
Q Consensus        14 ~Lh~Aa~-~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~-~~~~~~~~   91 (534)
                      .++.|.. .++.+.++.+++++                    .++.||||+|++.|+.++|++|++.+... .....+..
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g--------------------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~  127 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKG--------------------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE  127 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHT--------------------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcC--------------------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccC
Confidence            4555544 35555555555544                    44569999999999999999999987422 11234556


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc--cccCCCcHHHHH
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPEL--CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRI--VRKNGKTALHTA  167 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l--~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~tpLh~A  167 (534)
                      |.||||+|+..|+.+++++|++++++.  .+..+.+ .||||+|+..|+.+++++|++++++ .+.  .|..|.||||+|
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWA  205 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHH
Confidence            889999999999999999999999752  1222223 9999999999999999999999988 344  788899999999


Q ss_pred             H-HcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCC------
Q 009457          168 A-RYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR------  240 (534)
Q Consensus       168 ~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~------  240 (534)
                      + ..|+.++|++|++.++        .|.||||.|+++|+.+++++|++.+ ..++..|.    +++.|+.+|+      
T Consensus       206 a~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~~----~l~~A~~~g~~~vv~~  272 (376)
T 2aja_A          206 AVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMHD----AFKLSNPDGVFDLVTK  272 (376)
T ss_dssp             HSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHHT----TTTTTSSSSCCCCSSH
T ss_pred             HHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcC-cccccccH----HHHHHHHCCChhhhcH
Confidence            9 9999999999998552        3889999999999999999999863 33343322    3333333332      


Q ss_pred             ---------------------HHHHHHHhccCCccc----cccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCC
Q 009457          241 ---------------------PQIVSLLLSYTSIDV----NAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA  290 (534)
Q Consensus       241 ---------------------~~iv~~Ll~~~g~~~----~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga  290 (534)
                                           .+.+++|++..+++.    ....+.+.||||+|+.  .|+.  +++++|++.|.
T Consensus       273 ~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~--~g~~--e~v~lLl~~~~  343 (376)
T 2aja_A          273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR--LGNQ--GACALLLSIPS  343 (376)
T ss_dssp             HHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH--HTCT--THHHHHTTSHH
T ss_pred             HhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHH--cCcH--HHHHHHHcChH
Confidence                                 445666665433221    2234567799999999  7888  99999998654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=6e-27  Score=223.35  Aligned_cols=179  Identities=13%  Similarity=0.159  Sum_probs=114.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457           55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA  134 (534)
Q Consensus        55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa  134 (534)
                      ..|.||||.|+..|+.++++.|++++  .+++. +..|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            46888888888888888888888887  33443 367888888888888888888888888876 677888888888888


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCc-hHHHHH--HhCCCHHHHH
Q 009457          135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQ-TALHMA--VKGQCPSVVE  211 (534)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~g~~~iv~  211 (534)
                      ..|+.+++++|++.+++ .+.+|.+|+||||+|+..|+.+++++|+++++++ +..+..|. ||||+|  +..|+.++++
T Consensus        79 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHH
Confidence            88888888888888877 5678888888888888888888888888888884 66666665 888888  7788888888


Q ss_pred             HhHhcCccccccc---------cCCCChHHHHHHHcCC
Q 009457          212 YILSADHLILNER---------DKKGNTAVHIATRKCR  240 (534)
Q Consensus       212 ~Ll~~~~~~in~~---------d~~g~T~Lh~A~~~~~  240 (534)
                      +|++.+ ..++..         |..+.++++++...|.
T Consensus       157 ~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          157 FLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence            888753 333333         5556666666666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=6e-27  Score=223.39  Aligned_cols=180  Identities=17%  Similarity=0.132  Sum_probs=129.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      +..|.||||.|++.|+.+.++.|++++.+.+              .+..|.||||.|+..|+.++|++|++.+  .+++.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--------------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~   65 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--------------FNPLPLALLLDSSLEGEFDLVQRIIYEV--DDPSL   65 (239)
T ss_dssp             -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT--SSCCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc--------------cCchhhHHHHHHHHcCCHHHHHHHHHcC--CCCCC
Confidence            5679999999999999999999999987632              3467899999999999999999999987  46788


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-cHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGK-TALHT  166 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~  166 (534)
                      .|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++++++ .+..+..|. ||||+
T Consensus        66 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~  143 (239)
T 1ycs_B           66 PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADK  143 (239)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHH
Confidence            8999999999999999999999999999998 78899999999999999999999999999998 456676666 99999


Q ss_pred             H--HHcCCHHHHHHHHhcCCccceec---------CCCCchHHHHHHhCCC
Q 009457          167 A--ARYGLINIVTALIDRDPEIVTIK---------DKKGQTALHMAVKGQC  206 (534)
Q Consensus       167 A--~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~t~Lh~A~~~g~  206 (534)
                      |  +..|+.+++++|++.+++. +..         +..++++++++.+.|.
T Consensus       144 a~~~~~g~~~~~~~Ll~~~a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          144 CEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CCSSSTTCCCHHHHHHHHHHHT-TTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhhhccHHHHHHHHHhhhcc-cccccceEEEEeccCCCCCCcccccCCC
Confidence            9  7889999999999987763 333         6678888888887775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=2.4e-24  Score=191.06  Aligned_cols=145  Identities=18%  Similarity=0.188  Sum_probs=100.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCch-HHH
Q 009457          121 SCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT-ALH  199 (534)
Q Consensus       121 ~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh  199 (534)
                      ..+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+ .|+.+++++|++.+++ ++.+|..|+| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence            4466778888888888888888888887766 5667778888888874 7888888888888877 4777888888 888


Q ss_pred             HHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHH
Q 009457          200 MAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLAD  270 (534)
Q Consensus       200 ~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~  270 (534)
                      +|+..|+.+++++|+++ +.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||.+-+.
T Consensus        84 ~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C------------------
T ss_pred             HHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccCC
Confidence            88888888888888886 456688888888888888888888888888884 8888888888888876443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=8.8e-25  Score=199.74  Aligned_cols=154  Identities=18%  Similarity=0.163  Sum_probs=87.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHL----DVVNTILDADVSCTRIVRKNGKTALHTAA  168 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  168 (534)
                      .++|+.|++.|+.+.++.+++.+++.  ..|..|.||||+|+..|+.    +++++|++.|++ ++.+|.+|+||||+|+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            34555555555555555555544332  1124455555555555543    355555555555 4455555666666655


Q ss_pred             HcCC------HHHHHHHHhcCCccceecCCCCc-hHHHHHHhCCC-----HHHHHHhHhcCccccccccCCCChHHHHHH
Q 009457          169 RYGL------INIVTALIDRDPEIVTIKDKKGQ-TALHMAVKGQC-----PSVVEYILSADHLILNERDKKGNTAVHIAT  236 (534)
Q Consensus       169 ~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g~-----~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~  236 (534)
                      ..|+      .+++++|+++|++ ++.+|..|+ ||||+|+..+.     .+++++|++..+.+++.+|..|.||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            5554      4556666666666 366666666 66666666332     346666665334555666666666666666


Q ss_pred             HcCCHHHHHHHhcc
Q 009457          237 RKCRPQIVSLLLSY  250 (534)
Q Consensus       237 ~~~~~~iv~~Ll~~  250 (534)
                      ..++.+++++|..+
T Consensus       163 ~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          163 RCQKPIALKMMEDY  176 (186)
T ss_dssp             TTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHH
Confidence            66666666666653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=3.8e-24  Score=189.78  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCc-HHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS-PLY  131 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~t-pLh  131 (534)
                      .+..|.||||+|+..|+.++|++|++.+  .+++..+..|+||||+|+ .|+.+++++|+++++++ +..|..|.| |||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~   83 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH   83 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence            3445555555555555555555555554  334445555555555553 55555555555555554 444555555 555


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHH
Q 009457          132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALH  199 (534)
Q Consensus       132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  199 (534)
                      +|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|++++++ ++.++..|.||.+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~  149 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccc
Confidence            55555555555555555554 344555555555555555555555555555555 3445555555443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=6.5e-24  Score=183.67  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             hcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCC-CCcH
Q 009457           51 AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSS-NTSP  129 (534)
Q Consensus        51 ~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~-g~tp  129 (534)
                      +..+..|.||||+|+..|+.+++++|++.+  .+++..+..|+||||+|+. |+.+++++|+++++++ +..|.. |.||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~   81 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRP   81 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCH
Confidence            445556666666666666666666666654  3445555666666666666 6666666666666555 444555 5666


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          130 LYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       130 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      ||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6666666666666666666555 44555566666666666666666666665544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=3.7e-24  Score=195.55  Aligned_cols=150  Identities=16%  Similarity=0.143  Sum_probs=84.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccC-CCCCcHHHHHHHcCCH----HHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRS-RSDMNTFHVAAKKGHL----GIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~----~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      ++|+.|++.|+.+.++.+++.+.    +..+ ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||+|
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            44555555555555555554321    1112 3455555555555543    3555555555555 44455555555555


Q ss_pred             HHcCC------HHHHHHHHhcCCCcccccccCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCccceecCCCCchHHHH
Q 009457          134 AVQDH------LDVVNTILDADVSCTRIVRKNGK-TALHTAARYG-----LINIVTALID-RDPEIVTIKDKKGQTALHM  200 (534)
Q Consensus       134 a~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~  200 (534)
                      +..|+      .+++++|+++|++ ++.+|..|. ||||+|+..+     +.+++++|++ .+++ ++.+|..|+||||+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHH
Confidence            55554      4556666666665 455666666 6666666633     3446666666 6666 36666666666666


Q ss_pred             HHhCCCHHHHHHhHh
Q 009457          201 AVKGQCPSVVEYILS  215 (534)
Q Consensus       201 A~~~g~~~iv~~Ll~  215 (534)
                      |++.|+.+++++|.+
T Consensus       161 A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          161 VKRCQKPIALKMMED  175 (186)
T ss_dssp             HHTTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            666666666666665

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.3e-23  Score=181.77  Aligned_cols=126  Identities=14%  Similarity=0.229  Sum_probs=61.0

Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCcHH
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKN-GKTAL  164 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g~tpL  164 (534)
                      +..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+. |+.+++++|++.+++ .+.+|.. |.|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHH
Confidence            334445555555555555555555555554444 3444445555555555 555555555554444 3334444 44555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                      |+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            555544444555544444444 24444444444444444444444444444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.7e-22  Score=170.28  Aligned_cols=124  Identities=31%  Similarity=0.494  Sum_probs=67.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      |.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            555555555555555555555554  233444555555555555555555555555555554 34455555555555555


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      |+.+++++|++.+++ .+.+|..|.||||+|+..|+.+++++|+++++
T Consensus        79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            555555555555544 33445555555555555555555555555543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=2.3e-22  Score=173.89  Aligned_cols=122  Identities=21%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457           56 TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV  135 (534)
Q Consensus        56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~  135 (534)
                      .|.||||.|+..|+.+++++|++.+  .+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+.
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            3445555555555555555555543  333444455555555555555555555555555444 3444455555555555


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q 009457          136 QDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALID  181 (534)
Q Consensus       136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  181 (534)
                      .|+.+++++|++.+++ .+..|.+|.||||+|+..|+.+++++|++
T Consensus        90 ~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           90 IGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            5555555555555444 33444455555555555555555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=2e-22  Score=174.22  Aligned_cols=123  Identities=24%  Similarity=0.353  Sum_probs=77.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      ..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+..|.+|.||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence            34566666666666666666666666655 45566666666666666666666666666655 44556666666666666


Q ss_pred             cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457          170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                      .|+.+++++|++.+++ ++..|..|+||||+|+..|+.+++++|++
T Consensus        90 ~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           90 IGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            6666666666666655 35556666666666666666666666655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.4e-22  Score=168.37  Aligned_cols=123  Identities=36%  Similarity=0.567  Sum_probs=75.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY  170 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  170 (534)
                      +|+||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            3566666666666666666666666655 44556666666666666666666666666555 344555666666666666


Q ss_pred             CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      |+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            666666666666555 355555566666666666666666666554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=8.9e-24  Score=202.00  Aligned_cols=169  Identities=18%  Similarity=0.192  Sum_probs=133.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHH
Q 009457           55 DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA  134 (534)
Q Consensus        55 ~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa  134 (534)
                      ..+.+++.+++..|+.+.+..+....  .+   .+..|.||||.|+..|+.++++.|++ +.++ +..|..|.||||+|+
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~--~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   85 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIA--AD---VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   85 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSC--HH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred             CCCccHHHHHHHcCCCcccccccccc--cc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence            34556667777777666555444332  11   23568899999999999999999998 7666 677888999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccc-cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457          135 VQDHLDVVNTILDADVSCTRIVR-KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI  213 (534)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  213 (534)
                      ..|+.+++++|++.+++ .+.++ ..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++       
T Consensus        86 ~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~-------  156 (244)
T 3ui2_A           86 GLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK-------  156 (244)
T ss_dssp             HHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT-------
T ss_pred             HCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh-------
Confidence            99999999999998888 44455 7899999999999999999999999888 58888999999999985221       


Q ss_pred             HhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       214 l~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                                 +..+.||||+|+..|+.+++++|++.
T Consensus       157 -----------~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          157 -----------TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             -----------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence                       24578999999999999999999874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=3.1e-22  Score=182.46  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=99.9

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS  132 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~  132 (534)
                      .+..|.||||.|+..|+.++++.|++ +  .+++..|..|.||||+|+..|+.+++++|+++++++....+..|.||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            35567788888888888888888877 3  45666777778888888888888888888877777633323677777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHH
Q 009457          133 AAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEY  212 (534)
Q Consensus       133 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~  212 (534)
                      |+..|+.+++++|++.+++ .+.+|.+|.||||+|++.++.                  ..+.++|++|+..|+.+++++
T Consensus       117 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHH
Confidence            7777777777777777766 556777777777777654321                  234567777777777777777


Q ss_pred             hHh
Q 009457          213 ILS  215 (534)
Q Consensus       213 Ll~  215 (534)
                      |.+
T Consensus       178 L~~  180 (183)
T 3deo_A          178 LEG  180 (183)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            664

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=4.1e-22  Score=181.62  Aligned_cols=140  Identities=20%  Similarity=0.243  Sum_probs=124.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCcHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVR-KNGKTALHTA  167 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A  167 (534)
                      +..|.||||.|+..|+.++++.|++ +.++ +..|..|.||||+|+..|+.+++++|++.+++ .+.++ .+|+||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHH
Confidence            4578999999999999999999999 7776 77899999999999999999999999999988 45566 8899999999


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      +..|+.+++++|++++++ ++.+|..|+||||+|++.++.                  ..+.++|++|+..|+.+++++|
T Consensus       118 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          118 AGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence            999999999999999998 588999999999999874322                  3467999999999999999999


Q ss_pred             hcc
Q 009457          248 LSY  250 (534)
Q Consensus       248 l~~  250 (534)
                      .++
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=191.36  Aligned_cols=141  Identities=19%  Similarity=0.142  Sum_probs=103.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCcccccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCcH
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKS-----CDSSNTSPLYSAAVQ---DHLDVVNTILDADVSCTRIVRKNGKTA  163 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~-----~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tp  163 (534)
                      +.++||.|+..|+.+.++.|++.++++...     .|..|.||||+|+..   |+.+++++|++.+++ .+.+|.+|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence            456788888888888888888887776332     577788888888876   778888888888777 56677888888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCH
Q 009457          164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRP  241 (534)
Q Consensus       164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~  241 (534)
                      ||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+..       .|.||||+|+..|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            8888888888888888888877 477888888888888888888888888875432       477888888877653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=4e-22  Score=190.52  Aligned_cols=143  Identities=15%  Similarity=0.077  Sum_probs=127.8

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009457           52 MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY  131 (534)
Q Consensus        52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh  131 (534)
                      ..+..|.||||.|+..|+.++++.|++ +  .+++..|..|.||||+|+..|+.+++++|+++++++....+..|.||||
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            345679999999999999999999999 5  5678889999999999999999999999999999984443488999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHH
Q 009457          132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE  211 (534)
Q Consensus       132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~  211 (534)
                      +|+..|+.+++++|++.+++ .+.+|..|.||||+|+..++                  ...+.||||+|+..|+.++++
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~  177 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVIN  177 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHH
Confidence            99999999999999999988 67899999999999986322                  256789999999999999999


Q ss_pred             HhHhc
Q 009457          212 YILSA  216 (534)
Q Consensus       212 ~Ll~~  216 (534)
                      +|++.
T Consensus       178 ~L~~~  182 (244)
T 3ui2_A          178 VLEGQ  182 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=6.1e-22  Score=171.34  Aligned_cols=125  Identities=19%  Similarity=0.232  Sum_probs=76.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      +|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHH
Confidence            4556666666666666666666666666555 45566666666666666666666666666555 445566666666666


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHh
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS  215 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~  215 (534)
                      +..|+.+++++|++.+++ ++.+|..|.||||+|+..+..+++++|.+
T Consensus        84 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            666666666666666665 35566666666666666655555555544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=4.9e-22  Score=171.93  Aligned_cols=129  Identities=21%  Similarity=0.260  Sum_probs=115.7

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHH
Q 009457           52 MQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLY  131 (534)
Q Consensus        52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh  131 (534)
                      .+|..|.||||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence            36789999999999999999999999987  567788999999999999999999999999999987 678999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          132 SAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       132 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      +|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..+..+++++|.+..+
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999988 67899999999999999999888887776544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=2.6e-21  Score=190.61  Aligned_cols=138  Identities=19%  Similarity=0.244  Sum_probs=121.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-----cccCCCcHHHHHHHc---CCHHHHHHHHhcCCccceecCCCCch
Q 009457          125 SNTSPLYSAAVQDHLDVVNTILDADVSCTRI-----VRKNGKTALHTAARY---GLINIVTALIDRDPEIVTIKDKKGQT  196 (534)
Q Consensus       125 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t  196 (534)
                      .+.++|+.|+..|+.+.++.|++.+.++...     .+..|.||||+|+..   |+.+++++|++.+++ ++.+|..|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCC
Confidence            3557899999999999999999999884332     688999999999997   899999999999998 5889999999


Q ss_pred             HHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       197 ~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      |||+|+..|+.+++++|++. +.+++.+|.+|.||||+|+..++.+++++|++. |++      .|.||||+|+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC----
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHh
Confidence            99999999999999999996 667799999999999999999999999999995 655      58999999998

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=4.2e-21  Score=162.77  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhcc
Q 009457            9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIR   88 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~   88 (534)
                      ..|+||||.|++.|+.++++.|++.+.+             ++..|..|.||||+|+..|+.+++++|++.+  .+++..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~-------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~   69 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGED-------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKG--ADINAP   69 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCC-------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT--CCTTCC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC-------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCcC
Confidence            3445555555555555555555554433             2334444555555555555555555555443  334444


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      |..|+||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus        70 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           70 DKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT  113 (123)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence            445555555555555555555555554444 34445555555554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=2e-21  Score=182.70  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=61.8

Q ss_pred             HhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhh-CccccccCCCCCCc
Q 009457           50 MAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSI-WPELCKSCDSSNTS  128 (534)
Q Consensus        50 l~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~l~~~~d~~g~t  128 (534)
                      ++..+..|.||||+|+..|+.+++++|++.+  .+++..|..|.||||+|+..|+.+++++|++. +.++ +..|..|.|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence            3444445555555555555555555555543  23444445555555555555555555555554 3333 344455555


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          129 PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       129 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      |||+|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..|+.++++.|++.++
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            55555555555555555555444 33444555555555555555555555544443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=4e-21  Score=162.91  Aligned_cols=107  Identities=23%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|+||||+|+..|
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence            344444444444444444444444433 33344444444444444444444444444433 3334444444444444444


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHH
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMA  201 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  201 (534)
                      +.+++++|++.+++ ++.+|..|+||||+|
T Consensus        85 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 HVSCVKLLLSKGAD-KTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred             CHHHHHHHHHcCCC-CCCcCCCCCCHHHHh
Confidence            44444444444444 234444444444444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=4.9e-21  Score=180.01  Aligned_cols=133  Identities=26%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCccceecCCCCchHHHHHH
Q 009457          124 SSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDR-DPEIVTIKDKKGQTALHMAV  202 (534)
Q Consensus       124 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~  202 (534)
                      ..|.||||+|+..|+.+++++|++.+.+ .+.+|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|+||||+|+
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHH
Confidence            3444555555555555555555554444 334444555555555555555555555554 333 3445555555555555


Q ss_pred             hCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCcccccccc
Q 009457          203 KGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN  260 (534)
Q Consensus       203 ~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  260 (534)
                      ..|+.+++++|++. +.+++.+|.+|.||||+|+..++.++++.|+.. +++.+..|.
T Consensus       149 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~  204 (222)
T 3ehr_A          149 WKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA  204 (222)
T ss_dssp             HHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence            55555555555554 333455555555555555555555555555552 444444443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.6e-19  Score=175.73  Aligned_cols=127  Identities=21%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCccc-----eecCCCCchHHHHHHhC---CCHHHHHHhHhcCccccccccCCCChH
Q 009457          160 GKTALHTAARYGLINIVTALIDRDPEIV-----TIKDKKGQTALHMAVKG---QCPSVVEYILSADHLILNERDKKGNTA  231 (534)
Q Consensus       160 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~in~~d~~g~T~  231 (534)
                      ..++|+.|+..|+.+.++.+++.+++..     +..|..|+||||+|+..   |+.+++++|+++ +.++|.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence            4467788888888888888877777642     33367788888888887   778888888876 45567788888888


Q ss_pred             HHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcc
Q 009457          232 VHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH  292 (534)
Q Consensus       232 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~  292 (534)
                      ||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+.  .++.  +++++|+++|+..
T Consensus       209 Lh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~--~~~~--~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKR--LKHE--HCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHH--cCCH--HHHHHHHHcCCCC
Confidence            888888888888888888 478888888888888888887  6665  7888888887754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.8e-19  Score=175.45  Aligned_cols=191  Identities=17%  Similarity=0.144  Sum_probs=142.4

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457           53 QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYS  132 (534)
Q Consensus        53 ~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~  132 (534)
                      .|..+.++|+.+...|+..+.+++...-+..... +...+....    .....-..+++...........+....++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~-kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV-KPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC-SCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcC-CCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            4677889999999999988777665432111000 111111111    11122222333333222211122234578999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcc-----cccccCCCcHHHHHHHc---CCHHHHHHHHhcCCccceecCCCCchHHHHHHhC
Q 009457          133 AAVQDHLDVVNTILDADVSCT-----RIVRKNGKTALHTAARY---GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKG  204 (534)
Q Consensus       133 Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  204 (534)
                      |+..|+.+.+..+++.+.+..     +..|..|.||||+|+..   |+.+++++|++.+++ ++.+|..|+||||+|+..
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHT
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHc
Confidence            999999999999999988753     33478899999999999   899999999999999 588999999999999999


Q ss_pred             CCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          205 QCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       205 g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      |+.+++++|+++ +.+++.+|.+|.||||+|+..|+.+++++|+++
T Consensus       216 g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          216 DNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999996 667899999999999999999999999999996

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=2.4e-19  Score=180.83  Aligned_cols=145  Identities=20%  Similarity=0.209  Sum_probs=104.1

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccc--cCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHH
Q 009457          124 SSNTSPLYSAAVQ-DHLDVVNTILDADVSCTRIVR--KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM  200 (534)
Q Consensus       124 ~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  200 (534)
                      ..+.||||.|+.. |+.++++.|++.+++ .+..+  ..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            3456788888888 888888888888887 45566  7888899999888888899888888888 47888888899999


Q ss_pred             HHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccC--CccccccccCCCCHHHHHHH
Q 009457          201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYT--SIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       201 A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~--g~~~~~~n~~g~t~L~lA~~  271 (534)
                      |+..|+.+++++|+++ +.+++.+|.+|.||||+|+..++.+++++|+...  +.+....+..+.|+++++..
T Consensus       275 A~~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          275 ATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            9988888888888886 5666888888899999999888888888888642  23344556778888887766

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=6.1e-19  Score=177.84  Aligned_cols=148  Identities=16%  Similarity=0.208  Sum_probs=116.6

Q ss_pred             cCCCCCcHHHHHHHc-CCHHHHHHHHhhCccccccCC--CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           88 RSRSDMNTFHVAAKK-GHLGIAKELVSIWPELCKSCD--SSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~-g~~~iv~~Ll~~~~~l~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      .+..+.|+||.|+.. |+.++++.|+++++++ +..|  ..|.||||+|+..|+.+++++|++.+++ .+..|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            344567899999999 9999999999999998 5556  8899999999999999999999999988 678999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCc--cccccccCCCChHHHHHHHc
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH--LILNERDKKGNTAVHIATRK  238 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~--~~in~~d~~g~T~Lh~A~~~  238 (534)
                      |+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|+..+.  ......+..+.|+++++...
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            999999999999999999999 58999999999999999999999999997532  22234556778888877644

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=1.4e-18  Score=139.26  Aligned_cols=90  Identities=34%  Similarity=0.548  Sum_probs=41.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q 009457           92 DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYG  171 (534)
Q Consensus        92 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  171 (534)
                      |+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|.+|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence            444444444444444444444444443 33444444444444444444444444444444 3334444444444444444


Q ss_pred             CHHHHHHHHhcC
Q 009457          172 LINIVTALIDRD  183 (534)
Q Consensus       172 ~~~iv~~Ll~~~  183 (534)
                      +.+++++|++.+
T Consensus        80 ~~~~~~~Ll~~g   91 (93)
T 1n0q_A           80 HLEVVKLLLEAG   91 (93)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            444444444443

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.77  E-value=1.3e-18  Score=183.72  Aligned_cols=122  Identities=22%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccC------CCCCCcHHHHHHH---cCCHHHHHHHHhcCCCcccccccCCCcH
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSC------DSSNTSPLYSAAV---QDHLDVVNTILDADVSCTRIVRKNGKTA  163 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~------d~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~tp  163 (534)
                      .+.||.|+..|+.++++.|++.++++ +..      |..|.||||+|+.   .|+.+++++|++.|++ .+.+|.+|+||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~Tp  210 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  210 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcH
Confidence            35677777777777777777766665 222      5667777777744   6667777777776666 55666677777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457          164 LHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD  217 (534)
Q Consensus       164 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~  217 (534)
                      ||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++++
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g  263 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQ  263 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            7777777777777777777766 4666777777777777777777777777653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=1.6e-18  Score=139.07  Aligned_cols=93  Identities=29%  Similarity=0.450  Sum_probs=86.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHH
Q 009457           56 TGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAV  135 (534)
Q Consensus        56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~  135 (534)
                      +|.||||+|+..|+.+++++|++.+  .+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            4899999999999999999999987  567889999999999999999999999999999998 7789999999999999


Q ss_pred             cCCHHHHHHHHhcCCC
Q 009457          136 QDHLDVVNTILDADVS  151 (534)
Q Consensus       136 ~g~~~~v~~Ll~~~~~  151 (534)
                      .|+.+++++|++.|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999998863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=9.8e-19  Score=146.12  Aligned_cols=109  Identities=33%  Similarity=0.450  Sum_probs=87.1

Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHH
Q 009457          155 IVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHI  234 (534)
Q Consensus       155 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~  234 (534)
                      .+|.+|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..++.+++++|++. +.+++.+|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHH
Confidence            4677888888888888888888888888877 477788888888888888888888888876 55568888888888888


Q ss_pred             HHHcCCHHHHHHHhccCCccccccccCCCCHH
Q 009457          235 ATRKCRPQIVSLLLSYTSIDVNAINNQRETAM  266 (534)
Q Consensus       235 A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L  266 (534)
                      |+..++.+++++|+++ |+++|.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAK-GADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTT-SSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHc-CCCCCcCCccccccc
Confidence            8888888888888884 888888888888763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=2.9e-18  Score=143.23  Aligned_cols=95  Identities=27%  Similarity=0.373  Sum_probs=40.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAA  168 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~  168 (534)
                      |.+|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            334444444444444444444444444433 33344444444444444444444444444433 2333444444444444


Q ss_pred             HcCCHHHHHHHHhcCCc
Q 009457          169 RYGLINIVTALIDRDPE  185 (534)
Q Consensus       169 ~~g~~~iv~~Ll~~~~~  185 (534)
                      ..|+.+++++|++++++
T Consensus        84 ~~~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGAD  100 (115)
T ss_dssp             TTTCHHHHHHHHTTSSS
T ss_pred             HCCCHHHHHHHHHcCCC
Confidence            44444444444444444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.63  E-value=6.6e-16  Score=127.86  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             HHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCC
Q 009457           48 ELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNT  127 (534)
Q Consensus        48 ~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~  127 (534)
                      ......+.+|.||||+|+..|+.+++++|++.+  .+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~   91 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGK   91 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCC
Confidence            345566677777777777777777777777765  445666777777777777777777777777777665 55677777


Q ss_pred             cHHHHHHHcCCHHHHHHH
Q 009457          128 SPLYSAAVQDHLDVVNTI  145 (534)
Q Consensus       128 tpLh~Aa~~g~~~~v~~L  145 (534)
                      ||||+|+..|+.+++++|
T Consensus        92 tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHh
Confidence            777777777777777665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=1.2e-15  Score=126.37  Aligned_cols=90  Identities=24%  Similarity=0.278  Sum_probs=57.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      .+.+|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|..|.||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHH
Confidence            4556666666666666666666666666655 45566666666666666666666666666655 445666666666666


Q ss_pred             HHcCCHHHHHHH
Q 009457          168 ARYGLINIVTAL  179 (534)
Q Consensus       168 ~~~g~~~iv~~L  179 (534)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 3e-26
 Identities = 64/291 (21%), Positives = 115/291 (39%), Gaps = 35/291 (12%)

Query: 15  FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFS 74
              AV++ D++ ++ +++        +             + G T L+ +   + +DI  
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQE------------EEGGWTPLHNAVQMSREDIVE 56

Query: 75  CLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA 134
            LL+        +R ++    F +AA  G + + K  +S        CD    +    AA
Sbjct: 57  LLLRHGA--DPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAA 113

Query: 135 VQDHLDVVNTIL---------DADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
           V   +  +  +                   +RK G TAL  AA  G + ++  L+D    
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI-----LNERDKKGNTAVHIATRKCR 240
            V   D  G+ AL  A+     S VE I     L+     +N R ++G T + +A  K  
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAI--THLLLDHGADVNVRGERGKTPLILAVEKKH 231

Query: 241 PQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK 291
             +V  LL    I++N  ++  +TA+ LA  ++      +I E L + GA 
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLA--VELKL--KKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 1e-15
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 11/208 (5%)

Query: 92  DMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS 151
           D +    A +   + + ++L+     +    +    +PL++A      D+V  +L     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 152 CTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVE 211
                +         AA  G + ++   + +  ++    D  G TA   A        ++
Sbjct: 65  PVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALK 122

Query: 212 YILSA---------DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQR 262
           ++                     K G TA+  A  K   +++ +LL     DVNA +N  
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 263 ETAMDLADKLQYGDSTLEIKEALAEAGA 290
             A+  A           I   L + GA
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-07
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 159 NGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADH 218
                L  A +   +++V  L++    +   +++ G T LH AV+     +VE +L    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-04
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 193 KGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
           +    L  AV+ +   +V+ +L     +  + ++ G T +H A +  R  IV LLL +
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 6e-22
 Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 25/257 (9%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           AV   +L+ +K ++       +P                G T L+I+A  N  ++   LL
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPA-------------WNGYTPLHIAAKQNQVEVARSLL 218

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
           ++         S   +   H+AA++GH  +   L+S         + S  +PL+  A + 
Sbjct: 219 QYGG--SANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEG 275

Query: 138 HLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTA 197
           H+ V + ++   V       + G T LH A+ YG I +V   + +    V  K K G + 
Sbjct: 276 HVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSP 333

Query: 198 LHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTS--I 253
           LH A +     +V  +L   A     NE    G T + IA R     +  +L   T    
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 390

Query: 254 DVNAINNQRETAMDLAD 270
            V   +  R +  +  D
Sbjct: 391 FVLVSDKHRMSFPETVD 407

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.5 bits (231), Expect = 3e-21
 Identities = 55/280 (19%), Positives = 112/280 (40%), Gaps = 23/280 (8%)

Query: 12  HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQD 71
                 A + G +   + +++      A                 G T L+++  +N  D
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAHPNAAG-------------KNGLTPLHVAVHHNNLD 179

Query: 72  IFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPL 130
           I   LL            + +     H+AAK+  + +A+ L+        +      +PL
Sbjct: 180 IVKLLLPRGGSPHS---PAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPL 235

Query: 131 YSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIK 190
           + AA + H ++V  +  +  +   +  K+G T LH  A+ G + +   LI      V   
Sbjct: 236 HLAAQEGHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDAT 293

Query: 191 DKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
            + G T LH+A       +V+++L     + N + K G + +H A ++    IV+LLL  
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

Query: 251 TSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
                N +++   T + +A +L Y     ++ + + +  +
Sbjct: 353 -GASPNEVSSDGTTPLAIAKRLGYIS-VTDVLKVVTDETS 390

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 4e-20
 Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 22/253 (8%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A   G L  +KN++          G+S       + N   ET L+++A     ++   LL
Sbjct: 7   ASFMGHLPIVKNLLQR--------GASP-----NVSNVKVETPLHMAARAGHTEVAKYLL 53

Query: 78  KF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
           +    V     +++ D    H AA+ GH  + K L+           ++        A +
Sbjct: 54  QNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN--LATTAGHTPLHIAAR 108

Query: 137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT 196
           +        L    +    + K G T LH AA+YG + +   L++RD        K G T
Sbjct: 109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLT 167

Query: 197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVN 256
            LH+AV      +V+ +L       +     G T +HIA ++ + ++   LL Y     N
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSAN 225

Query: 257 AINNQRETAMDLA 269
           A + Q  T + LA
Sbjct: 226 AESVQGVTPLHLA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 8e-18
 Identities = 45/209 (21%), Positives = 76/209 (36%), Gaps = 9/209 (4%)

Query: 59  TALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPE 117
           T L++++      I   LL+      +    +       H+AA+ GH  +AK L+    +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 118 LCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVT 177
           +  +    + +PL+ AA   H ++V  +L+ + +                A         
Sbjct: 59  V-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETV 115

Query: 178 ALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATR 237
             +           KKG T LH+A K     V E +L  D    N   K G T +H+A  
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVH 174

Query: 238 KCRPQIVSLLLSYTSIDVNAINNQRETAM 266
                IV LLL       ++      T +
Sbjct: 175 HNNLDIVKLLLPRGG-SPHSPAWNGYTPL 202

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 2e-16
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 43/196 (21%)

Query: 129 PLYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI 186
           PL+ A+   HL +V  +L   A  +   +     +T LH AAR G   +   L+    + 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVAKYLLQNKAK- 58

Query: 187 VTIKDKKGQTALHMAVKGQCPSVVEYILSADHLI-------------------------- 220
           V  K K  QT LH A +    ++V+ +L  +                             
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 221 ------LNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQY 274
                      KKG T +H+A +  + ++  LLL       NA      T + +A  + +
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVA--VHH 175

Query: 275 GDSTLEIKEALAEAGA 290
            +  L+I + L   G 
Sbjct: 176 NN--LDIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-10
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 196 TALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDV 255
           T LH+A       +V+ +L       N  + K  T +H+A R    ++   LL      V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKV 59

Query: 256 NAINNQRETAMDLA 269
           NA     +T +  A
Sbjct: 60  NAKAKDDQTPLHCA 73

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.9 bits (206), Expect = 2e-18
 Identities = 38/262 (14%), Positives = 81/262 (30%), Gaps = 17/262 (6%)

Query: 24  LETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE 83
           LE     +      E P   +  S     +  +        + ++     +       + 
Sbjct: 39  LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 98

Query: 84  IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLD--V 141
           +            H      +L + K LV          +   +  + +    ++ D   
Sbjct: 99  LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 142 VNTILDADVSCTRIVRKNGKTALHTA------------ARYGLINIVTALIDRDPEIVTI 189
              +LD    C  +     +T LH              A+Y L  ++  ++ +    +  
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 218

Query: 190 KDKKGQTALHMAVKGQCPSVVEYILSADHL--ILNERDKKGNTAVHIATRKCRPQIVSLL 247
              + ++  +     +  S++E +     +  +LN +D  G+T ++IA R     IV  L
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 248 LSYTSIDVNAINNQRETAMDLA 269
           L Y   D    N      +D  
Sbjct: 279 LDY-GADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 8e-11
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 4/188 (2%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
                +LE +K+++ + +     D       + A+++     +    A  ++      L 
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 78  -KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ 136
                  +  I   S M     AAK     +   +V       +S  +   S       +
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 137 DHLDVVNTILDADVSCTRI--VRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG 194
               ++  +    +    +     NG T L+ AAR G I+IV AL+D   +   I +K G
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSG 292

Query: 195 QTALHMAV 202
              +    
Sbjct: 293 LRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 1/129 (0%)

Query: 157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA 216
           +   +  L       +  + T+L +      +      Q   H++       V +   + 
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGD 276
              +    D+ GNT +H  T     ++V  L+ +   +    +N  E+ +  A K     
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 277 STLEIKEAL 285
            +   +  L
Sbjct: 155 DSGTFEALL 163

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (197), Expect = 1e-17
 Identities = 42/256 (16%), Positives = 81/256 (31%), Gaps = 19/256 (7%)

Query: 49  LMAMQNDTGETALYISAANNFQDIFSCLLKF-CDVEIVKIRSRSDMNTFHVAAKKGHLGI 107
           +     + G+TAL+++  +  +     LL F    E + +++       H+AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 108 AKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTR------------I 155
            ++L +    +  +    +T+    A           +L    S  R             
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHL-ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 156 VRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS 215
                       ++    N      +     +  ++  G T LH+AV  +   +V  +  
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 216 ADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYG 275
           A   +       G T +H+A       ++ LLL     D  A      T +  A  L   
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSA--LLRP 236

Query: 276 DSTLEIKEALAEAGAK 291
           +    +   L   GA 
Sbjct: 237 N--PILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 7e-14
 Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 29/247 (11%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           AV       L  ++      E  D          +QND G+TAL+++A          L 
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLD----------LQNDLGQTALHLAAILGEASTVEKLY 65

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTS--------- 128
                  V +  R      H+A +      A  L+   P   +    +  +         
Sbjct: 66  AAGA--GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 129 ---PLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
              P    +  +  +      +           +G T LH A  +    +V  L D   +
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQI 243
           +   +   G+T LH+AV+ Q  SV+E +L   AD      R   G T +  A  +  P +
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL 240

Query: 244 VSLLLSY 250
             LL ++
Sbjct: 241 ARLLRAH 247

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 2e-17
 Identities = 47/241 (19%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 10  ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNF 69
           +++    +   SG LE LK  I            SL +      +    TAL+ + +   
Sbjct: 2   VSNLMVCNLAYSGKLEELKESIL--------ADKSLATR----TDQDSRTALHWACSAGH 49

Query: 70  QDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSP 129
            +I            V  +  +  +  H+AA  G   I K L+    ++  + + +  +P
Sbjct: 50  TEIVEF--LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTP 106

Query: 130 LYSAAVQDHLDVVNTILD--ADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIV 187
           L+ AA ++  ++   +L+  A+            TA+H AA  G + ++  L+       
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKD---HYEATAMHRAAAKGNLKMIHILLYYKA-ST 162

Query: 188 TIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
            I+D +G T LH+A   +     + ++S    I    +K+  T + +A +     I+  +
Sbjct: 163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA-KGGLGLILKRM 220

Query: 248 L 248
           +
Sbjct: 221 V 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 4e-15
 Identities = 43/206 (20%), Positives = 67/206 (32%), Gaps = 35/206 (16%)

Query: 96  FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA--------------------- 134
               A  G L   KE +     L    D  + + L+ A                      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 135 -----------VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRD 183
                           D +   L    +    V +NG T LH AA      I   L++  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 184 PEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQI 243
                 KD    TA+H A        + +IL       N +D +GNT +H+A  + R + 
Sbjct: 127 AN-PDAKDHYEATAMHRAAAKGNL-KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 244 VSLLLSYTSIDVNAINNQRETAMDLA 269
             LL+S     +   N + +T + +A
Sbjct: 185 AKLLVSQ-GASIYIENKEEKTPLQVA 209

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 80.7 bits (198), Expect = 4e-17
 Identities = 45/267 (16%), Positives = 86/267 (32%), Gaps = 36/267 (13%)

Query: 12  HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQD 71
               F A  +G    L  +   LT DE             +       A  ++A N    
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVK----------VIQAENYQAFRLAAENGHLH 140

Query: 72  IFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSC--DSSNTSP 129
           + + L +    EI+ +    + + F +AA+ GHL +   L  + P    +     +  + 
Sbjct: 141 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 200

Query: 130 LYSAAVQDHLDVVNTILDA-----------------DVSCTRIVRKNGKTALHTAARYGL 172
            ++A  + H +V+N +LD                   V+       N    +H A +   
Sbjct: 201 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 260

Query: 173 INIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLIL----NERDKKG 228
            + V  L+ +      ++       L           + ++LS   +             
Sbjct: 261 PDGVFDLVTKSE---CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA 317

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSIDV 255
           N  + +A R       +LLLS  S+  
Sbjct: 318 NELLRLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.3 bits (158), Expect = 4e-12
 Identities = 30/255 (11%), Positives = 70/255 (27%), Gaps = 31/255 (12%)

Query: 54  NDTGETALYISAANNFQDIFSCLLKF------CDVEI---VKIRSRSDMNTFHVAAKKGH 104
           +      +++    N + +   L  +         ++      +         VAA  G 
Sbjct: 43  SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGC 102

Query: 105 LGIAK--ELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSC-TRIVRKNGK 161
                   L+    E+ K   + N      AA   HL V+N + +   +    +++    
Sbjct: 103 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 162

Query: 162 TALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHL 219
            A   AA  G ++++  L +         I+ +        AV     +V+ ++L     
Sbjct: 163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV- 221

Query: 220 ILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTL 279
                      A           +   +  +          +   A  L++     D   
Sbjct: 222 -------MLAYAEIHEFEYGEKYVNPFIARH-----VNRLKEMHDAFKLSNP----DGVF 265

Query: 280 EIKEALAEAGAKHAR 294
           ++          +  
Sbjct: 266 DLVTKSECLQGFYML 280

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 6e-08
 Identities = 26/196 (13%), Positives = 53/196 (27%), Gaps = 19/196 (9%)

Query: 143 NTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI----------VTIKDK 192
           + I   ++S   +  K     +       +  +   L                    K  
Sbjct: 30  HFISANELSLMTLSYKE-AIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI 88

Query: 193 KGQTALHMAVKGQCPSVVEYI--LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
           K +    +A    C S ++ +  L     I+     +   A  +A       +++ L   
Sbjct: 89  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 148

Query: 251 -TSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR-YVGQVDEAMELKRT 308
             +  +  I  +   A  LA +  +    L +   L E     A   +   +        
Sbjct: 149 APTEIMAMIQAENYHAFRLAAENGH----LHVLNRLCELAPTEATAMIQAENYYAFRWAA 204

Query: 309 VSDIKHEVSAQLIQNE 324
           V    H V   L+   
Sbjct: 205 VGRGHHNVINFLLDCP 220

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.0 bits (180), Expect = 3e-15
 Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 24/247 (9%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
              +   E  +++I +  K+    G+ +        +    T L ++     + + + L+
Sbjct: 40  IASNSSAEKSEDLIVHEAKECIAAGADV-----NAMDCDENTPLMLAVLARRRRLVAYLM 94

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS------------IWPELCKSCDSS 125
           K      +  +S                G+   +++                      + 
Sbjct: 95  KAGADPTIYNKSERSALHQAA--ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 152

Query: 126 NTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
           N      A+ +  ++    +     +     +  G+TALH AA+   + IV  L+     
Sbjct: 153 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 212

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQI 243
               +D+ G+T + +A +     VV Y++   A    +   D   +TA  +A       I
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNI 269

Query: 244 VSLLLSY 250
           V +    
Sbjct: 270 VDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 59/266 (22%)

Query: 58  ETALYI-SAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWP 116
           E+ + + + A     I   + +   V I+    R +    H  A       +++L+    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-ESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 117 ELCKSC-------DSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR 169
           + C +        D    +PL  A +     +V  +     +   I  K+ ++ALH AA 
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL-MKAGADPTIYNKSERSALHQAAA 116

Query: 170 YGLINIVTALIDRDPEI------------------------------------------- 186
                ++  +++                                                
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 187 ---VTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQI 243
                 +  KG+TALH A +     +V+Y++       +++D+ G T + +A ++ R ++
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 244 VSLLLSYTSIDVNAINNQRETAMDLA 269
           V  L+      V A++    TA  LA
Sbjct: 237 VMYLIQQ-GASVEAVDATDHTARQLA 261

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 1e-14
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 12/235 (5%)

Query: 59  TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVS---IW 115
             L+ +   N       LL      ++  + +      H +       I   L+S     
Sbjct: 2   YPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINI 175
                  DS  T    + +V +   V +            +   G T LH A       +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 176 VTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA 235
              LI+    +  IKDK  Q  LH A       ++E +       +N +DK+G T +  A
Sbjct: 121 SQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGA 290
             +       LL+     + + ++N+   A D+A          ++K+       
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA-------LNEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 1e-14
 Identities = 39/233 (16%), Positives = 74/233 (31%), Gaps = 16/233 (6%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           A    +   ++ ++ +          SL+ +    ++  G   L+ S +    +I S LL
Sbjct: 7   ACMENEFFKVQELLHS--------KPSLLLQ----KDQDGRIPLHWSVSFQAHEITSFLL 54

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQD 137
              +   +         T    A         + +   P        +N           
Sbjct: 55  SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 114

Query: 138 HLDV-VNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQT 196
                V+  L  + +  RI  K  +  LH AA  G + ++  L       V  +DK+G T
Sbjct: 115 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 197 ALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
            L  A+          ++       +  D KG  A  +A  +   Q+    L+
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 6/41 (14%), Positives = 12/41 (29%)

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           N  +H A  +     V  LL      +   +      +  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.5 bits (171), Expect = 5e-14
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 34/278 (12%)

Query: 15  FFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFS 74
           F +A  SGD E +  +++         G+ +        N  G TAL+ +  ++  D+  
Sbjct: 44  FLAACSSGDTEEVLRLLER--------GADI-----NYANVDGLTALHQACIDDNVDMVK 90

Query: 75  CLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAA 134
                 +      +  ++      AA         E +        + +S   +PL  A 
Sbjct: 91  F---LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE 147

Query: 135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG 194
            +   +++   ++         RK  +  +   AR  L +                 K G
Sbjct: 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS--------GHINDVRHAKSG 199

Query: 195 QTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSID 254
            TALH+A       V+  +L      +N +D  G T +H A    + +   +L+     D
Sbjct: 200 GTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCD 257

Query: 255 VNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKH 292
           + A+N   +TA D+AD+        +I   L E   K 
Sbjct: 258 MEAVNKVGQTAFDVADE--------DILGYLEELQKKQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
             V+ +       A   G    V  L++R  + +   +  G TALH A       +V+++
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFL 92

Query: 214 LSADH 218
           +    
Sbjct: 93  VENGA 97

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 9/199 (4%)

Query: 51  AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKE 110
           A  + TGET+L+++A     D    LL        +  +        VAA    +     
Sbjct: 17  ATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL 76

Query: 111 LVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170
                    +  D +    L +    + +       DAD++       +GKTALH AA  
Sbjct: 77  RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN---AADNSGKTALHWAAAV 133

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKG 228
                V  L+         +D K +T L +A +       + +L   A+       D   
Sbjct: 134 NNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLDNFAN---REITDHMD 189

Query: 229 NTAVHIATRKCRPQIVSLL 247
                +A+ +    IV LL
Sbjct: 190 RLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.3 bits (121), Expect = 5e-08
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 5/186 (2%)

Query: 85  VKIRSRSDMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVN 143
           +         T  H+AA+      AK L+    +     ++  T    + A  D + V  
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVA-ADAMGVFQ 73

Query: 144 TILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVK 203
            +L    +       +G T L  AAR  +  +V  LI  D + +   D  G+TALH A  
Sbjct: 74  ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAA 132

Query: 204 GQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRE 263
                 V  +    H   + +D K  T + +A R+   +    LL     +    ++   
Sbjct: 133 VNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDR 190

Query: 264 TAMDLA 269
              D+A
Sbjct: 191 LPRDVA 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 141 VVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHM 200
           V++ +L         + K G+T+LH AAR+   +    L+D   +  +  +         
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 201 AVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINN 260
                       + +    +           +  A       +  L+ +    D+NA +N
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD--ADINAADN 121

Query: 261 QRETAM 266
             +TA+
Sbjct: 122 SGKTAL 127

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 6/219 (2%)

Query: 55  DTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR-SDMNTFHVAAKKGHLGIAKELVS 113
           + G+T L+I+           L+        ++    +   T    A    L     L+ 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 114 IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA---DVSCTRIVRKNGKTALHTAARY 170
                  + D    +  + A        +  +LD+             +G TALH A   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNT 230
                V  L++R  +I  +  K G++ L  AV+    S+V+ +L      +N +   G++
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-NVNAQMYSGSS 179

Query: 231 AVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           A+H A+ +    +V  L+     D +  N   +T + +A
Sbjct: 180 ALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA 217

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 8e-10
 Identities = 31/232 (13%), Positives = 80/232 (34%), Gaps = 20/232 (8%)

Query: 18  AVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLL 77
           AV  G+L  +  +++   +             + + N+  +T L+++       +     
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRE---------LDIYNNLRQTPLHLAVITTLPSVVRL-- 58

Query: 78  KFCDVEIVKIRSRSDMNTFHVAAKKGHL---GIAKELVSIWPELCKSCDSSNTSPLYSAA 134
                       R      H+A +           +  +      ++ +    + L+ A 
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 135 VQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKG 194
             +  + V  +L+       +  K+G++ L  A     +++V  L+     +   +   G
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSG 177

Query: 195 QTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIV 244
            +ALH A       +V  ++   AD    + ++   +T + +A  +    I+
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 228 GNTAVHIATRKCRPQIVSLLLSYTS---IDVNAINNQRETAMDLADK 271
           G+T +HIA  +     V  L++       +++  NN R+T + LA  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 12/220 (5%)

Query: 57  GETALYISAANNFQDIFSCLLKFCDVEIVKIRSR-SDMNTFHVAAKKGHLGIAKELVSIW 115
           G++ L+++  +  + +   +++    ++  +  + +   T    A   +     E +   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 116 PELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVR-----KNGKTALHTAARY 170
               +  D    +PL+ A  Q  L  V  +  +  +            NG T LH A+ +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKG 228
           G + IV  L+    ++   +   G+TALH+AV  Q P +V  +L   AD    N    +G
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV---NRVTYQG 178

Query: 229 NTAVHIATRKCRPQIVSLLLSYTSIDVNAI-NNQRETAMD 267
            +   +   +   +I   L   T  ++  +  ++ E + D
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 9e-07
 Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 97  HVAAKKGHLGIAKELVSIWPE---LCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT 153
           H+A       +  E++             ++   +PL+ A + +  ++   +L A     
Sbjct: 7   HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE 66

Query: 154 RIVRKNGKTALHTAARYGLINIVTAL----IDRDPEIVTIKDKKGQTALHMAVKGQCPSV 209
               +          +  L ++              I+   +  G T LH+A       +
Sbjct: 67  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 126

Query: 210 VEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLA 269
           VE ++S    +  +    G TA+H+A     P +VSLLL     DVN +  Q  +   L 
Sbjct: 127 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLT 185

Query: 270 DKLQYGDSTLEIKEALAEAGAKHAR 294
                      I++ L +   ++ +
Sbjct: 186 --WGRPS--TRIQQQLGQLTLENLQ 206

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 159 NGKTALHTAARYGLINIVTALIDR---DPEIVTIKDKKGQTALHMAVKGQC 206
           +G + LH A  +    +   +I +   D   +  ++   QT LH+AV    
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 7e-08
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 5/156 (3%)

Query: 94  NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT 153
           +    AA +G +   + L+        + +    + L           +  +        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
           +               +     V   +      V + D  G   +H+AV+    +VV ++
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKV---LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS 249
            +     L+ RD +G T + +A ++    +V +L  
Sbjct: 121 AA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 38/159 (23%)

Query: 158 KNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD 217
           + G   L  AA  G +  V  L+ R+       ++ G+TAL + + G     +E +    
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 218 HL-------------------------------ILNERDKKGNTAVHIATRKCRPQIVSL 246
                                             +N  D  G   +H+A ++    +VS 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 247 LLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEAL 285
           L + +  D++  + +  T ++LA  LQ G    ++ + L
Sbjct: 120 LAAES--DLHRRDARGLTPLELA--LQRGA--QDLVDIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 16/157 (10%)

Query: 14  SFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIF 73
           S   AV++ D+  L     +          +         ++  ETAL+++  +  +   
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLA-------NGHEPDETALHLAVRSVDRTSL 61

Query: 74  SCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA 133
             +           +     +T              +L+       +  + S  +PL  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY 170
               H      +  A          +G+   H    Y
Sbjct: 122 KRLKHEHCEELLTQA---------LSGRFNSHVHVEY 149

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 10/146 (6%)

Query: 123 DSSNTSPLYSAAVQDHLDVVNTILD--ADVSCTRIVR---KNGKTALHTAAR---YGLIN 174
            ++    L  A     +  +        D++    +    +  +TALH A R      ++
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 175 IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHI 234
           IV  L+     +     K      +  +      +   +       +   ++ G T + I
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL--RGKASIEIANESGETPLDI 120

Query: 235 ATRKCRPQIVSLLLSYTSIDVNAINN 260
           A R        LL    S   N+  +
Sbjct: 121 AKRLKHEHCEELLTQALSGRFNSHVH 146

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (110), Expect = 6e-07
 Identities = 25/157 (15%), Positives = 47/157 (29%), Gaps = 6/157 (3%)

Query: 92  DMNT-FHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADV 150
           D+      AA+ G     + L++           ++   L +         V        
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 151 SCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV 210
                V +         A       +  ++ +    V  KD    TALH A +     VV
Sbjct: 61  DARTKVDRTP----LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 211 EYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL 247
           E ++     + + + K   TA  I+       +  +L
Sbjct: 117 ELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 4/157 (2%)

Query: 94  NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT 153
           N    AA +G L     L+     +        T+      ++     +   L    +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV---MKLGNPEIARRLLLRGANP 59

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
            +  + G   +H AAR G ++ +  L++   ++  I+D +G   LH+A K     VVE++
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY 250
           +      +  R+ KG+TA  +A    R ++VSL+ + 
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 3/123 (2%)

Query: 94  NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCT 153
           +    AA +G +   + L+                      +      V  +L    +  
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV---MMMGSARVAELLLLHGAEP 61

Query: 154 RIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI 213
                   T     A          ++ R    + ++D  G+  + +A +     V  Y+
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 214 LSA 216
            +A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 126 NTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPE 185
           +   L +AA +  ++ V  +L+A  +         +           +  +  L   +P 
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 186 IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVS 245
                                  VV +        L+ RD  G   V +A       +  
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHR---AGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 246 LLLS 249
            L +
Sbjct: 120 YLRA 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 14/122 (11%), Positives = 37/122 (30%), Gaps = 4/122 (3%)

Query: 97  HVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV 156
             ++ +G   + + ++    +     D   T+   +  V      +   L          
Sbjct: 6   LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA--VCAGHTEIVKFLVQFGVNVNAA 63

Query: 157 RKNGKTALHTAARYGLINIVTALIDR--DPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL 214
             +G T LH AA    + +   L++       +T  D +        ++       +++ 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 215 SA 216
             
Sbjct: 124 GV 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 4/124 (3%)

Query: 128 SPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIV 187
           + L  ++++   D+V  I+      +    +      +         +    + +    V
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF--LVQFGVNV 60

Query: 188 TIKDKKGQTALHMAVKGQCPSVVEYILS--ADHLILNERDKKGNTAVHIATRKCRPQIVS 245
              D  G T LH A       V ++++   A    +   D +          +   Q   
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 246 LLLS 249
            L  
Sbjct: 121 FLYG 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=309.31  Aligned_cols=275  Identities=23%  Similarity=0.314  Sum_probs=205.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      ||||+||..|+.++|+.|++++.+             ++..|..|+||||+|+..|+.++|++|++++  .+++..+..|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~-------------in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--adi~~~~~~g   66 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGAS-------------PNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNAKAKDD   66 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-------------SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSCCCTTS
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCC-------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCC
Confidence            899999999999999999999876             4567889999999999999999999999987  5678889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccc--------------------------------cccCCCCCCcHHHHHHHcCCHH
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPEL--------------------------------CKSCDSSNTSPLYSAAVQDHLD  140 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l--------------------------------~~~~d~~g~tpLh~Aa~~g~~~  140 (534)
                      +||||+|+..|+.+++++|+...++.                                ....+..+.++|+.|+..++.+
T Consensus        67 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  146 (408)
T d1n11a_          67 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR  146 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHH
Confidence            99999999999998888887654321                                0122334445555555555555


Q ss_pred             HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCcc----------------------------------
Q 009457          141 VVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEI----------------------------------  186 (534)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----------------------------------  186 (534)
                      ++++|++.+.+ .+..+.+|.+|||+|+..|+.+++++|++++++.                                  
T Consensus       147 ~v~~ll~~~~~-~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~  225 (408)
T d1n11a_         147 VAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  225 (408)
T ss_dssp             HHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCC-CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccccc
Confidence            55555554444 3344444555555555555555555554443321                                  


Q ss_pred             -------------------------------ceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHH
Q 009457          187 -------------------------------VTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIA  235 (534)
Q Consensus       187 -------------------------------~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A  235 (534)
                                                     .+..+..|.||||.|++.++.+++++|++. +.+++..+..+.||||.|
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~  304 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVA  304 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhh
Confidence                                           234455666777777777777888888775 445677778888888888


Q ss_pred             HHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhhhc
Q 009457          236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKRTV  309 (534)
Q Consensus       236 ~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~  309 (534)
                      +..++.++++++++ .|+++|.+|.+|+||||+|++  .++.  +++++|+++||++...+..+.+++++....
T Consensus       305 ~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~--~g~~--~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         305 SHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQ--QGHT--DIVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             HHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             cccCcceeeeeecc-ccccccccCCCCCCHHHHHHH--cCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            88888888888888 488999999999999999998  7776  999999999999988888888888776443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=301.48  Aligned_cols=273  Identities=23%  Similarity=0.303  Sum_probs=205.9

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCC--CCcchHH------------HHH--------------------
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAP--DGSSLVS------------ELM--------------------   50 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~--~~~~~~~------------~ll--------------------   50 (534)
                      +..|..|+||||+|++.|+.+++++|++++.+....  +|.+++.            .++                    
T Consensus        27 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  106 (408)
T d1n11a_          27 NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA  106 (408)
T ss_dssp             CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhh
Confidence            456889999999999999999999999998764321  1211110            000                    


Q ss_pred             -------------------hcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHH
Q 009457           51 -------------------AMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKEL  111 (534)
Q Consensus        51 -------------------~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~L  111 (534)
                                         ...+..+.++|+.|+..++.++++.|++.+  ..++..+.+|.+|||.|+..|+.+++++|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~--~~~~~~~~~~~~~L~~A~~~~~~~~~~~L  184 (408)
T d1n11a_         107 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLL  184 (408)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCcCchHHHHHHHcCCHHHHHHH
Confidence                               112344555555555555555555555554  33455566777777777777777777777


Q ss_pred             HhhCcccc--------------------------------ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC
Q 009457          112 VSIWPELC--------------------------------KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKN  159 (534)
Q Consensus       112 l~~~~~l~--------------------------------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  159 (534)
                      +++++++.                                ...+..|.|||++|+..++.++++++++.+.. .+..+..
T Consensus       185 l~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~  263 (408)
T d1n11a_         185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKS  263 (408)
T ss_dssp             GGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred             HhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCC
Confidence            77765541                                01233445555555666666666666665544 4456788


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcC
Q 009457          160 GKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKC  239 (534)
Q Consensus       160 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~  239 (534)
                      |.||++.|++.++.+++++|++++++ ++..+..+.||||.++..++.++++++++. +.++|.+|.+|+||||+|+++|
T Consensus       264 g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~-g~~in~~d~~G~T~Lh~A~~~g  341 (408)
T d1n11a_         264 GLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQG  341 (408)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeeeeeccc-cccccccCCCCCCHHHHHHHcC
Confidence            99999999999999999999999998 588889999999999999999999999996 6677999999999999999999


Q ss_pred             CHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457          240 RPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE  287 (534)
Q Consensus       240 ~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~  287 (534)
                      +.+++++|+++ |+++|.+|++|+||||+|++  .++.  +++++|..
T Consensus       342 ~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~~--~~~~--~iv~~L~~  384 (408)
T d1n11a_         342 HTDIVTLLLKN-GASPNEVSSDGTTPLAIAKR--LGYI--SVTDVLKV  384 (408)
T ss_dssp             CHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHH--TTCH--HHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHH--cCCH--HHHHHHHH
Confidence            99999999995 99999999999999999999  7776  77776643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-35  Score=274.71  Aligned_cols=220  Identities=21%  Similarity=0.291  Sum_probs=143.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCC
Q 009457           11 THQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        11 g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      +++.|+.+|+.|+.+.|+.+++..+            ..++.+|..|.||||+|+..|+.+++++|++.+  ......+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~------------~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~--~~~~~~~~   68 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK------------SLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDD   68 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG------------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CCSCCCCT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC------------CcCcCcCCCCCCHHHHHHHhhhhcccccccccc--cccccccc
Confidence            4566777777777777766666543            235666677777777777777777777776664  22333445


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARY  170 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  170 (534)
                      .+.++++.|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+.+ ++.++..|.||||+|+..
T Consensus        69 ~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~  146 (223)
T d1uoha_          69 AGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAK  146 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhc
Confidence            5666777777777777777777766665 55666667777777777777777777666665 455666666666666666


Q ss_pred             CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457          171 GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS  249 (534)
Q Consensus       171 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~  249 (534)
                      ++.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +.+++.+|.+|+||||+| ..|+.+++++|++
T Consensus       147 ~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         147 GNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            666666666666666 366666666666666666666666666664 445566666666666665 3466666666654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-35  Score=282.56  Aligned_cols=232  Identities=22%  Similarity=0.165  Sum_probs=124.7

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhh
Q 009457            5 KSFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEI   84 (534)
Q Consensus         5 ~~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~   84 (534)
                      .=++++|+||||+||+.|+.+++++|++.+.+.          ..++.+|..|.||||+|+..|+.+++++|++.+  .+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~----------~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~   70 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH----------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AG   70 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS----------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------ccccCcCCCCCCccchHHhhccccccccccccc--cc
Confidence            346778888888888888888888888877652          236677788888888888888888888888876  55


Q ss_pred             hhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCC---------CCcHHHHHHHc---CCHHHHHHHHhcCCCc
Q 009457           85 VKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSS---------NTSPLYSAAVQ---DHLDVVNTILDADVSC  152 (534)
Q Consensus        85 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~---------g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~  152 (534)
                      ++..|.+|+||||+|+..|+.+++++|++............         ..+.+..+...   ........+.......
T Consensus        71 i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (255)
T d1oy3d_          71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (255)
T ss_dssp             SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred             ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcc
Confidence            67778888888888888888888888877654331111000         00000000000   0000000000000111


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHH
Q 009457          153 TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAV  232 (534)
Q Consensus       153 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~L  232 (534)
                      .+.+|.+|.||||+|++.|+.+++++|++.+++.....+..|.||||+|++.|+.+++++|+++ +.+++.+|..|+|||
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L  229 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPL  229 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred             cccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            2234444445555555555555555554444443333334444444444444444444444443 233444444444444


Q ss_pred             HHHHHcCCHHHHHHHhc
Q 009457          233 HIATRKCRPQIVSLLLS  249 (534)
Q Consensus       233 h~A~~~~~~~iv~~Ll~  249 (534)
                      |+|+.+++.+++++|++
T Consensus       230 ~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         230 GSALLRPNPILARLLRA  246 (255)
T ss_dssp             HHHHTSSCHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHH
Confidence            44444444444444444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-35  Score=280.30  Aligned_cols=234  Identities=18%  Similarity=0.183  Sum_probs=184.9

Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhcC-ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHH
Q 009457           52 MQNDTGETALYISAANNFQDIFSCLLKFC-DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPL  130 (534)
Q Consensus        52 ~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpL  130 (534)
                      ..+++|.||||+||+.|+.+++++|++++ +...++.+|..|+||||+|+..|+.+++++|+++++++ +..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhh
Confidence            46789999999999999999999999986 23446788999999999999999999999999999998 67899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccc---------ccCCCc---HHHHHHHcCCHHHHHHHH-hcCCccceecCCCCchH
Q 009457          131 YSAAVQDHLDVVNTILDADVSCTRIV---------RKNGKT---ALHTAARYGLINIVTALI-DRDPEIVTIKDKKGQTA  197 (534)
Q Consensus       131 h~Aa~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~t---pLh~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~t~  197 (534)
                      |+|+..++.+++++|++.........         +..+.+   ++..............+. ..+.. .+.+|..|+||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-in~~d~~g~Tp  161 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTP  161 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTTSCCH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcc-cccccccCccc
Confidence            99999999999999998654421110         111111   111111111111122222 22233 46788999999


Q ss_pred             HHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCC
Q 009457          198 LHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDS  277 (534)
Q Consensus       198 Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~  277 (534)
                      ||+|++.++.+++++|++.+....+.++..|.||||+|+..++.+++++|+++ |++++.+|..|+||||+|+.  .++.
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~-gadin~~d~~g~t~L~~A~~--~~~~  238 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALL--RPNP  238 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHT--SSCH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHH--CCCH
Confidence            99999999999999999987666666788999999999999999999999995 89999999999999999998  7776


Q ss_pred             HHHHHHHHHHcCCcc
Q 009457          278 TLEIKEALAEAGAKH  292 (534)
Q Consensus       278 ~~~i~~~L~~~ga~~  292 (534)
                        +++++|++.||+.
T Consensus       239 --~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         239 --ILARLLRAHGAPE  251 (255)
T ss_dssp             --HHHHHHHHTTCCC
T ss_pred             --HHHHHHHHcCCCC
Confidence              9999999999963

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-34  Score=271.54  Aligned_cols=225  Identities=20%  Similarity=0.192  Sum_probs=204.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccc--cccCCCCCCcHHHHHHH
Q 009457           58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL--CKSCDSSNTSPLYSAAV  135 (534)
Q Consensus        58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l--~~~~d~~g~tpLh~Aa~  135 (534)
                      +||||+||..|+.++|+.|++.. ...++.+|.+|+||||+|+..|+.+++++|+++++++  ....+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            58999999999999999999864 3567889999999999999999999999999998765  34568899999999999


Q ss_pred             cCCHHHHHHHHhcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          136 QDHLDVVNTILDADVSC-TRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       136 ~g~~~~v~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      .+..++++.++..+... ....+..+.+|++.++..++.++++.|++.+.. ....|..|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccccccc
Confidence            99999999999877643 344677899999999999999999999999988 4788999999999999999999999999


Q ss_pred             hcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          215 SADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       215 ~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      +.++.+++.+|.+|+||||+|+..|+.+++++|++..|++++.+|.+|+||||+|+.     .  +++++|++.|++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-----~--~~~~~Ll~~g~d  228 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-----E--QVKKFFLNNVVD  228 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-----H--HHHHHHHHHCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-----H--HHHHHHHHcCCC
Confidence            988788899999999999999999999999999976699999999999999999974     2  799999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=269.17  Aligned_cols=220  Identities=22%  Similarity=0.239  Sum_probs=200.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHc
Q 009457           57 GETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQ  136 (534)
Q Consensus        57 g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~  136 (534)
                      +++.|+.+|..|+.+.|+.++... ...++.+|..|+||||+|+..|+.+++++|++..... ...+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            468999999999999998888764 4668889999999999999999999999999998887 55677899999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      |+.+++++|++++.+ .+.+|.+|.||||+|+..|+.+++++|++++.+ ++.+|..|.||||+|+..++.+++++|++.
T Consensus        81 ~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            999999999999987 678999999999999999999999999999988 588999999999999999999999999985


Q ss_pred             CccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457          217 DHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE  287 (534)
Q Consensus       217 ~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~  287 (534)
                       +.+++.+|.+|+||||+|+..|+.+++++|++. |++++.+|.+|+||||+|.   .++.  ++++.|++
T Consensus       159 -~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~-Gad~~~~d~~g~tpl~~A~---~~~~--~i~~~Ll~  222 (223)
T d1uoha_         159 -KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ-GASIYIENKEEKTPLQVAK---GGLG--LILKRMVE  222 (223)
T ss_dssp             -TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHCC---TTHH--HHHHHHHC
T ss_pred             -cceeeeccCCCCceeccccccCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH---CCCH--HHHhcccC
Confidence             566799999999999999999999999999995 9999999999999999983   3444  78888764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=271.27  Aligned_cols=264  Identities=23%  Similarity=0.316  Sum_probs=228.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS   89 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   89 (534)
                      +++|+||.|++.|+.++|+.|++++++.+            ...+..|.||||+|+..|+.+++++|++.+  ......+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din------------~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~--~~~~~~~   69 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVN------------FQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRK   69 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTT------------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcC------------ccCCCCCCCHHHHHHHcCCHHHhhhhcccc--ccccccc
Confidence            46899999999999999999999997642            123457999999999999999999999987  4455667


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---------ccccccCC
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSC---------TRIVRKNG  160 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~---------~~~~d~~g  160 (534)
                      ..+.+|.+.|+..+..+.....++...+. ...+..+.|+++.|+..|+...+..++....+.         ....+..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (285)
T d1wdya_          70 KNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred             cccchhhHHHhhcCCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccC
Confidence            78999999999999999999999987766 566889999999999999999999998765442         12345679


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCccceecCCCCchHHHHHHhC----CCHHHHHHhHhcCccccccccCCCChHHHHH
Q 009457          161 KTALHTAARYGLINIVTALIDR-DPEIVTIKDKKGQTALHMAVKG----QCPSVVEYILSADHLILNERDKKGNTAVHIA  235 (534)
Q Consensus       161 ~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~----g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A  235 (534)
                      .||||+|+++|+.+++++|++. +.+ ++..+..|.++++.+...    +..+++++|++. +.+++.+|..|.||||+|
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCC-cccccCCCCcccccccccccchHHHHHHHHHHHC-CCCCCccCCCCCCccchh
Confidence            9999999999999999999976 455 588889999888776543    345799999986 566799999999999999


Q ss_pred             HHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCcccc
Q 009457          236 TRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHAR  294 (534)
Q Consensus       236 ~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~  294 (534)
                      +..|+.+++++|++..|++++.+|.+|+||||+|++  .++.  +++++|+++||++..
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~--~~~~--eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE--LKLK--KIAELLCKRGASTDC  281 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHHHHHSSCSCC
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH--cCCH--HHHHHHHHCCCCCCc
Confidence            999999999999987899999999999999999999  7777  999999999999754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-34  Score=268.87  Aligned_cols=226  Identities=20%  Similarity=0.255  Sum_probs=201.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCCh-hhhhccCC
Q 009457           12 HQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDV-EIVKIRSR   90 (534)
Q Consensus        12 ~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~   90 (534)
                      +||||+||+.|+.+.++.|++..+.            .++.+|.+|.||||+|+..|+.+++++|++.+.. ......+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~------------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~   68 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS------------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD   68 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG------------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCT
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC------------cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccc
Confidence            5899999999999999999997643            3678899999999999999999999999998732 22345678


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccc-cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPEL-CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAAR  169 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l-~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~  169 (534)
                      .|.+|+|+|+..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+.. ....|.+|+||||+|+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~  147 (229)
T d1ixva_          69 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAAS  147 (229)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhh
Confidence            8999999999999999999999887654 244577899999999999999999999999887 56789999999999999


Q ss_pred             cCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhc
Q 009457          170 YGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLS  249 (534)
Q Consensus       170 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~  249 (534)
                      .|+.+++++|++.++..++.+|..|+||||+|+++|+.+++++|++..+.+++.+|.+|+||||+|+   +.+++++|++
T Consensus       148 ~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~  224 (229)
T d1ixva_         148 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN  224 (229)
T ss_dssp             HTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHH
Confidence            9999999999999876678899999999999999999999999998667788999999999999998   4689999999


Q ss_pred             cCCcc
Q 009457          250 YTSID  254 (534)
Q Consensus       250 ~~g~~  254 (534)
                       .|+|
T Consensus       225 -~g~d  228 (229)
T d1ixva_         225 -NVVD  228 (229)
T ss_dssp             -HCCC
T ss_pred             -cCCC
Confidence             4765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.7e-34  Score=273.53  Aligned_cols=255  Identities=18%  Similarity=0.194  Sum_probs=207.9

Q ss_pred             ChHHHHHHHcC-CHHHHHHHHHhcCCCCCCCCcchHHHHHhccc-CCCCcHHHHHHHcCCHHHHHHHHhcCC------hh
Q 009457           12 HQSFFSAVRSG-DLETLKNIIDNLTKDEAPDGSSLVSELMAMQN-DTGETALYISAANNFQDIFSCLLKFCD------VE   83 (534)
Q Consensus        12 ~t~Lh~Aa~~G-~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n-~~g~T~L~~Aa~~g~~~iv~~Ll~~~~------~~   83 (534)
                      +||||+|++.+ +.++++.|.+.+.+               ..+ ..|.||||+||..|+.++|+.|+.+..      ..
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n---------------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga   65 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN---------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA   65 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT---------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC---------------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC
Confidence            48999777764 44444444444332               233 469999999999999999998875421      14


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CcccccccCCC
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADV--SCTRIVRKNGK  161 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~--~~~~~~d~~g~  161 (534)
                      +++.+|.+|+||||+|+..|+.+++++|+++|+++ +..|.+|.|||++|+..++.+++..+.....  ...+..+..+.
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  144 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM  144 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             CccccCCCCCeeecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccc
Confidence            57788999999999999999999999999999997 6789999999999999999999999886532  12345678889


Q ss_pred             cHHHHHHHcCCHH---HHHHHHhcCCc-------cceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChH
Q 009457          162 TALHTAARYGLIN---IVTALIDRDPE-------IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTA  231 (534)
Q Consensus       162 tpLh~A~~~g~~~---iv~~Ll~~~~~-------~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~  231 (534)
                      ++.+.+...+..+   .+..+.+....       ..+..+..|+||||.++..++.+++++++...+.+.+.+|..|.||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tp  224 (277)
T d2fo1e1         145 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP  224 (277)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred             hhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCH
Confidence            9999999887544   44444443221       1234567899999999999999999998877788889999999999


Q ss_pred             HHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHH
Q 009457          232 VHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAE  287 (534)
Q Consensus       232 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~  287 (534)
                      ||+|+..|+.+++++|+++ |+|++.+|..|+||||+|++  .++.  +++++|.+
T Consensus       225 L~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~--~~~~--~iv~lL~~  275 (277)
T d2fo1e1         225 IMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQA--NNHH--NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHH--TTCH--HHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHH--cCCH--HHHHHHHH
Confidence            9999999999999999995 99999999999999999999  7777  99999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=6e-33  Score=270.31  Aligned_cols=247  Identities=23%  Similarity=0.274  Sum_probs=200.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhc
Q 009457            8 RFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKI   87 (534)
Q Consensus         8 ~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~   87 (534)
                      +..+.|+||.||+.|+.++|+.||+++.+             ++.+|.+|.||||+|+..|+.++|++|++++  .+...
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-------------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~--~~~~~  101 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGAD-------------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQ  101 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC-------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCC-------------CCccCCCCCcHHHHHHhcCCceeeeeecccc--ccccc
Confidence            34567999999999999999999999876             4678899999999999999999999999987  34566


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHH
Q 009457           88 RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTA  167 (534)
Q Consensus        88 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A  167 (534)
                      .+..+.+|||.|+..++.++++.|++++... ...|..+.+|+++|+..++.+.++.++.............+..+.+  
T Consensus       102 ~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--  178 (291)
T d1s70b_         102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--  178 (291)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--
T ss_pred             ccccccccccccccccccchhhcccccCccc-ccccccCccccccccccccchhcccccccccccccccccccccccc--
Confidence            7788999999999999999999999998876 6778999999999999999999999987544322222221111111  


Q ss_pred             HHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          168 ARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       168 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                           ......+...... ....+..|.||||.|+..|+.+++++|++. +.++|.+|.+|+||||+|+..|+.+++++|
T Consensus       179 -----~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~din~~~~~g~TpL~~A~~~g~~~iv~lL  251 (291)
T d1s70b_         179 -----RDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRIL  251 (291)
T ss_dssp             -----HHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             -----ccchhhhcccccc-cccccCCCCChhhHHHHcCChhhhcccccc-eecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                 1222333333333 456778999999999999999999999986 566799999999999999999999999999


Q ss_pred             hccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc
Q 009457          248 LSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEA  288 (534)
Q Consensus       248 l~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~  288 (534)
                      ++ .|+|++.+|++|+||||+|++        +++++|.+.
T Consensus       252 l~-~Gadv~~~d~~G~TaL~~A~e--------~~~~~L~~~  283 (291)
T d1s70b_         252 VE-NLCDMEAVNKVGQTAFDVADE--------DILGYLEEL  283 (291)
T ss_dssp             HH-TTCCTTCCCTTSCCTTTSCCS--------GGGHHHHHH
T ss_pred             HH-CCCCCCCcCCCCCCHHHHHHH--------HHHHHHHHH
Confidence            99 599999999999999999975        566666544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=6.8e-31  Score=253.32  Aligned_cols=234  Identities=17%  Similarity=0.191  Sum_probs=190.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhcc
Q 009457            9 FITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIR   88 (534)
Q Consensus         9 ~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~   88 (534)
                      .+|.||||+||..|+.++|+.|+......--.     .+..++.+|.+|.||||+|+..|+.++|++|+++|  .+++..
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~-----~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G--ad~n~~  103 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIA-----AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIY  103 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH-----TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHH-----cCCCccccCCCCCeeeccccccccccccccccccc--cccccc
Confidence            46999999999999999999887653210000     00015678999999999999999999999999987  567888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCcc--ccccCCCCCCcHHHHHHHcCCHH---HHHHHHhcCCC-------ccccc
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPE--LCKSCDSSNTSPLYSAAVQDHLD---VVNTILDADVS-------CTRIV  156 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~--l~~~~d~~g~tpLh~Aa~~g~~~---~v~~Ll~~~~~-------~~~~~  156 (534)
                      +..|+||||.|+..++.++++.+......  ..+..+..+.++.+.+...+..+   .+..+.+....       .....
T Consensus       104 ~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (277)
T d2fo1e1         104 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE  183 (277)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSS
T ss_pred             cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999876432  23556888999999999887643   44444433211       12345


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHH
Q 009457          157 RKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIAT  236 (534)
Q Consensus       157 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~  236 (534)
                      +..|.||||.++..++.+++++++.......+.+|..|+||||+|++.|+.+++++|++. +.++|.+|.+|+||||+|+
T Consensus       184 ~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~  262 (277)
T d2fo1e1         184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQ  262 (277)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHH
T ss_pred             ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHH
Confidence            678999999999999999999877665555688999999999999999999999999996 5678999999999999999


Q ss_pred             HcCCHHHHHHHhcc
Q 009457          237 RKCRPQIVSLLLSY  250 (534)
Q Consensus       237 ~~~~~~iv~~Ll~~  250 (534)
                      .+|+.+++++|++.
T Consensus       263 ~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         263 ANNHHNIVDIFDRC  276 (277)
T ss_dssp             HTTCHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHh
Confidence            99999999999873

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-29  Score=240.35  Aligned_cols=238  Identities=19%  Similarity=0.232  Sum_probs=206.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhh
Q 009457            6 SFRFITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIV   85 (534)
Q Consensus         6 ~~~~~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~   85 (534)
                      ..+..|.||||+|+..|+.++++.|++.+...             ...+..+.+|.+.|+..+..+....+++..  ...
T Consensus        34 ~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   98 (285)
T d1wdya_          34 QEEEGGWTPLHNAVQMSREDIVELLLRHGADP-------------VLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADV   98 (285)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCT
T ss_pred             cCCCCCCCHHHHHHHcCCHHHhhhhccccccc-------------cccccccchhhHHHhhcCCccccchhhhhc--ccc
Confidence            44567999999999999999999999988763             346678899999999999999999999875  334


Q ss_pred             hccCCCCCcHHHHHHHcCCHHHHHHHHhhCccc---------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 009457           86 KIRSRSDMNTFHVAAKKGHLGIAKELVSIWPEL---------CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIV  156 (534)
Q Consensus        86 ~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l---------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~  156 (534)
                      ...+..|.++++.|+..|+...++.++....+.         ....+..|.||||+|+..|+.+++++|++......+..
T Consensus        99 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~  178 (285)
T d1wdya_          99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC  178 (285)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC
T ss_pred             cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc
Confidence            456788999999999999999999999876543         12345679999999999999999999998644346788


Q ss_pred             ccCCCcHHHHHHHc----CCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHH
Q 009457          157 RKNGKTALHTAARY----GLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAV  232 (534)
Q Consensus       157 d~~g~tpLh~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~L  232 (534)
                      +..|.++++.+...    +..+++++|++++++ ++.+|..|.||||.|++.|+.+++++|++.++.++|.+|.+|+|||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL  257 (285)
T d1wdya_         179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL  257 (285)
T ss_dssp             CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred             cCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            89999988877654    345799999999999 5889999999999999999999999999987888999999999999


Q ss_pred             HHHHHcCCHHHHHHHhccCCcccccccc
Q 009457          233 HIATRKCRPQIVSLLLSYTSIDVNAINN  260 (534)
Q Consensus       233 h~A~~~~~~~iv~~Ll~~~g~~~~~~n~  260 (534)
                      |+|++.|+.+++++|+++ |+|+|++|.
T Consensus       258 ~~A~~~~~~eiv~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         258 LLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             HHHHHcCCHHHHHHHHHC-CCCCCcccC
Confidence            999999999999999995 999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=234.56  Aligned_cols=213  Identities=20%  Similarity=0.221  Sum_probs=112.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcC--ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           56 TGETALYISAANNFQDIFSCLLKFC--DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      +|+||||+||..|+.++|+.|++..  ...+++..|..|+||||+|+..|+.+++++|++++++. +..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccc
Confidence            3555555555555555555554310  01233444555555555555555555555555555444 34444555555555


Q ss_pred             HHcCCHHHHHHHHhcCC---CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHH
Q 009457          134 AVQDHLDVVNTILDADV---SCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVV  210 (534)
Q Consensus       134 a~~g~~~~v~~Ll~~~~---~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv  210 (534)
                      ...++.++++.+.....   ...+.......+||+.+.........+.|.....+.....+..|.++|+.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            55555555544443221   112223344555666666655555555555555444444455556666666666666666


Q ss_pred             HHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHH
Q 009457          211 EYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADK  271 (534)
Q Consensus       211 ~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~  271 (534)
                      +.+++. +..++.+|..|+||||+|+..|+.+++++|++. |+|++.+|.+|+||||+|++
T Consensus       161 ~~~~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         161 QLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSS
T ss_pred             hhhhhh-ccccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHh
Confidence            666654 333455566666666666666666666666653 56666666666666666654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-29  Score=232.75  Aligned_cols=210  Identities=25%  Similarity=0.287  Sum_probs=183.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh----hCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHH
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVS----IWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHT  166 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~----~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~  166 (534)
                      +|+||||+|+..|+.++++.|++    .+.++ +..|..|.||||+|+..|+.+++++|++.++. .+..+..|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccc-cccccccccccccc
Confidence            69999999999999999999986    55566 77899999999999999999999999999887 56788899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCc---cceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHH
Q 009457          167 AARYGLINIVTALIDRDPE---IVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQI  243 (534)
Q Consensus       167 A~~~g~~~iv~~Ll~~~~~---~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~i  243 (534)
                      |...++.++++.+......   ..+.......++||.+.........+.|...........+..|.++||.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            9999999999988765432   2344566788999999999999999999987666667778899999999999999999


Q ss_pred             HHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHhh
Q 009457          244 VSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELKR  307 (534)
Q Consensus       244 v~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  307 (534)
                      ++.+++. |.+++.+|..|.||||+|+.  .++.  +++++|++.|+++...+..+.+++++..
T Consensus       160 ~~~~~~~-~~~~~~~d~~g~t~L~~A~~--~g~~--~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         160 VQLLLQH-GANVNAQMYSGSSALHSASG--RGLL--PLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHHT-TCCTTCBCTTSCBHHHHHHH--HTCH--HHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             hhhhhhh-ccccccccccCcchHHHHHH--cCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            9999995 88999999999999999999  7776  9999999999998887777777777653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=236.88  Aligned_cols=195  Identities=17%  Similarity=0.187  Sum_probs=105.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccC
Q 009457           10 ITHQSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRS   89 (534)
Q Consensus        10 ~g~t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   89 (534)
                      +|+||||+|+..|+.++++.|++.....         ...++.+|.+|+||||+|+..|+.+++++|++.+  .+++..|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~---------~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~~~~d   69 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD---------LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRD   69 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC--------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC---------CCCcccCCCCCCcccccccccccccccccccccc--ccccccc
Confidence            3566666666666654444443322110         0113445566666666666666666666666654  3445555


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhhCccc-----cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHH
Q 009457           90 RSDMNTFHVAAKKGHLGIAKELVSIWPEL-----CKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTAL  164 (534)
Q Consensus        90 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l-----~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL  164 (534)
                      ..|.||||.|+..|+.++++.|++.+...     .......|.||||.|+..++.+++++|+..+.......+.+|.|||
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L  149 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL  149 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcc
Confidence            66666666666666666666666543221     1222334555666666555666555555555554433444555666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc
Q 009457          165 HTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA  216 (534)
Q Consensus       165 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  216 (534)
                      |+|++.|+.+++++|++.+++ ++.+|..|+||||+|++.++.+++++|++.
T Consensus       150 ~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         150 HLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             ccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            666666666666666555555 355555555555555555555555555553

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-29  Score=234.71  Aligned_cols=201  Identities=21%  Similarity=0.265  Sum_probs=100.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcC--ChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHH
Q 009457           56 TGETALYISAANNFQDIFSCLLKFC--DVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSA  133 (534)
Q Consensus        56 ~g~T~L~~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~A  133 (534)
                      +|+||||+|+..|+.++++.|++..  ...+++.+|.+|+||||+|+..|+.+++++|++.+++. +..|..|.||||++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccc
Confidence            3556666666666544444333221  11234445555555555555555555555555555554 44455555555555


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHh
Q 009457          134 AVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYI  213 (534)
Q Consensus       134 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  213 (534)
                      +..|+.++++.|++.+.....                             ..........|.||||.|+..++.++++++
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  130 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHLASIHGYLGIVELL  130 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccchhhhhcccccc-----------------------------cccccccccccchhhhHHhhcCChhheeee
Confidence            555555555555543322100                             000112223445555555555555555555


Q ss_pred             HhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHHHHcCCc
Q 009457          214 LSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEALAEAGAK  291 (534)
Q Consensus       214 l~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~  291 (534)
                      +..+.......+.+|+||||+|++.|+.+++++|+++ |+|++.+|.+|.||||+|+.  .++.  +++++|.+.+.+
T Consensus       131 ~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~-gad~~~~~~~G~tpl~~A~~--~~~~--~~~~~l~~~~~~  203 (221)
T d1iknd_         131 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWG--RPST--RIQQQLGQLTLE  203 (221)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTT--SSCH--HHHHHHHTTSCG
T ss_pred             cccCcccccccccCCCCccccccccccHHHHHHHHhc-CCcccccCCCCCCHHHHHHH--CCCH--HHHHHHHHcCCc
Confidence            5543333223334556666666666666666666653 55666666666666666555  3333  555555555443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=8.9e-28  Score=221.48  Aligned_cols=205  Identities=21%  Similarity=0.238  Sum_probs=119.4

Q ss_pred             HHHHHHHHhcCCCCCCCCcchHHHHHhc-ccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcC
Q 009457           25 ETLKNIIDNLTKDEAPDGSSLVSELMAM-QNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKG  103 (534)
Q Consensus        25 ~~v~~ll~~~~~~~~~~~~~~~~~ll~~-~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g  103 (534)
                      |+|+.|++++++             ++. .|.+|.||||+||+.|+.+++++|++.+  ..++..+..+.++++.++..+
T Consensus         3 ~~v~~Ll~~g~d-------------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~   67 (209)
T d1ot8a_           3 QVISDLLAQGAE-------------LNATMDKTGETSLHLAARFARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAAD   67 (209)
T ss_dssp             HHHHHHHHHHHH-------------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHCCCC-------------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc--ccccccccccccccccccccc
Confidence            566666666543             333 3556666666666666666666666654  334455556666666666666


Q ss_pred             CHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q 009457          104 HLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRD  183 (534)
Q Consensus       104 ~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~  183 (534)
                      +..................+..|.++.+.+.........+.|.+.+.+ .+.++..|.|||+.++..+..++++.+++.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~  146 (209)
T d1ot8a_          68 AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHH  146 (209)
T ss_dssp             CHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecccc
Confidence            665555555544444344445555666666666666666666655554 3445556666666666666666666666665


Q ss_pred             CccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHH
Q 009457          184 PEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLL  247 (534)
Q Consensus       184 ~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~L  247 (534)
                      .+ ++..|..|.||||+|+..|+.+++++|++. +.+++.+|.+|+||||+|+.+|+.++|++|
T Consensus       147 ~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         147 AN-RDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cc-ccccccccccccchhccccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            55 355566666666666666666666666654 334456666666666666666666666554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=1.9e-28  Score=238.13  Aligned_cols=266  Identities=18%  Similarity=0.199  Sum_probs=208.7

Q ss_pred             HcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHH
Q 009457           20 RSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVA   99 (534)
Q Consensus        20 ~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A   99 (534)
                      +....+.++.+.+...+.+.+.....    -......|.|||+.||+.|+.++|++|++.|  .+++..|.+|.||||+|
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A   80 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRK----KTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQA   80 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCS----CCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHH
T ss_pred             hHhhHHHHHHHHhCcccccCchhhcc----ccccCCCCchHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHH
Confidence            34445667777766655432221000    0112345679999999999999999999988  66788999999999999


Q ss_pred             HHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Q 009457          100 AKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTAL  179 (534)
Q Consensus       100 a~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  179 (534)
                      +..|+.+++++|++++++. ...+..+.|||+.|+..++.++++.|++.+.. ....|..|.+|+++|+..++.+.++.+
T Consensus        81 ~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~l  158 (291)
T d1s70b_          81 CIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNE  158 (291)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             HhcCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcc-cccccccCccccccccccccchhcccc
Confidence            9999999999999999887 66788999999999999999999999999877 567899999999999999999999999


Q ss_pred             HhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhccCCccccccc
Q 009457          180 IDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSYTSIDVNAIN  259 (534)
Q Consensus       180 l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n  259 (534)
                      +.............+..+.+.       .....+.. ........+..|.||||+|+..|+.++++.|++ .|+++|.++
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~  229 (291)
T d1s70b_         159 VNRQGVDIEAARKEEERIMLR-------DARQWLNS-GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKD  229 (291)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHH-------HHHHHHHH-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCC
T ss_pred             ccccccccccccccccccccc-------cchhhhcc-cccccccccCCCCChhhHHHHcCChhhhccccc-ceecccccc
Confidence            865433222222222222211       22222222 334446678899999999999999999999999 499999999


Q ss_pred             cCCCCHHHHHHHccCCCCHHHHHHHHHHcCCccccccCChhhHHHHh
Q 009457          260 NQRETAMDLADKLQYGDSTLEIKEALAEAGAKHARYVGQVDEAMELK  306 (534)
Q Consensus       260 ~~g~t~L~lA~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  306 (534)
                      .+|.||||+|+.  .++.  +++++|+++|++....+..+.+++++.
T Consensus       230 ~~g~TpL~~A~~--~g~~--~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         230 YDGWTPLHAAAH--WGKE--EACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             TTCCCHHHHHHH--TTCH--HHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             cCCCCHHHHHHH--cCCH--HHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999  7777  999999999999988777777777765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.3e-27  Score=220.40  Aligned_cols=206  Identities=23%  Similarity=0.298  Sum_probs=186.8

Q ss_pred             HHHHHHHHhcCChhhhhc-cCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 009457           70 QDIFSCLLKFCDVEIVKI-RSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDA  148 (534)
Q Consensus        70 ~~iv~~Ll~~~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~  148 (534)
                      .|+|++|+++|  .+++. .|.+|+||||+||..|+.+++++|++.++++ +..+..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g--~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQG--AELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCC--CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            58999999997  56765 5899999999999999999999999999988 67899999999999999999888887776


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCC
Q 009457          149 DVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKG  228 (534)
Q Consensus       149 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g  228 (534)
                      ...........|.++.+.+.........+.|.+.+.+ ++.++..|+|||+.++..+..++++.+++. +..++.+|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeeccc-ccccccccccc
Confidence            6665666777899999999999999999999999888 478899999999999999999999999997 55579999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHHHccCCCCHHHHHHHH
Q 009457          229 NTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLADKLQYGDSTLEIKEAL  285 (534)
Q Consensus       229 ~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L  285 (534)
                      +||||+|+..|+.+++++|+++ |++++.+|..|+||||+|++  .++.  +++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~--~~~~--~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASE--RLHH--DIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH--TTCH--HHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH--cCCH--HHHhhc
Confidence            9999999999999999999995 99999999999999999999  7776  898876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=3.3e-29  Score=249.90  Aligned_cols=231  Identities=16%  Similarity=0.159  Sum_probs=136.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHH---HHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChh
Q 009457            7 FRFITHQSFFSAVRSGDLETLKN---IIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVE   83 (534)
Q Consensus         7 ~~~~g~t~Lh~Aa~~G~~~~v~~---ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~   83 (534)
                      .+.+|.||||+||+.|+.++++.   |++.+.+             ++.+|.+|.||||+||+.|+.++|++|++.+...
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-------------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~  152 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE  152 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-------------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            35567778888888887766655   4555443             3456667778888888888888888888776322


Q ss_pred             hhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCcccc--ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc------c
Q 009457           84 IVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELC--KSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTR------I  155 (534)
Q Consensus        84 ~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~--~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~------~  155 (534)
                      .....+.+|.||||+|+..||.+++++|++.++...  +..+.++.||+|.|+.+|+.+++++|++.+++...      .
T Consensus       153 ~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~  232 (346)
T d2ajaa1         153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE  232 (346)
T ss_dssp             HHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred             cccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHH
Confidence            222233457788888888888888888887776542  22334556677777777888888888776654211      1


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCCcc-ceecC-------CCCchHHHHHHhCCCHHHHHHhHhcCcc----cccc
Q 009457          156 VRKNGKTALHTAARYGLINIVTALIDRDPEI-VTIKD-------KKGQTALHMAVKGQCPSVVEYILSADHL----ILNE  223 (534)
Q Consensus       156 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~d-------~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~----~in~  223 (534)
                      .+..+.++++.+...+..+....+....++. .+..+       ..+.++|+.|+..+..+++++|++.+..    ..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~  312 (346)
T d2ajaa1         233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT  312 (346)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCS
T ss_pred             cCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhccccc
Confidence            1122234444444444444333333222211 01111       1233567777777777777777764322    1233


Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          224 RDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       224 ~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      .+.+|+||||+|++.|+.+++++|++.
T Consensus       313 ~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         313 IPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             STTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            445677777777777777777777764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2.4e-28  Score=243.67  Aligned_cols=259  Identities=15%  Similarity=0.125  Sum_probs=182.4

Q ss_pred             cCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHH---HHhcCChhhhhccCCCCCcHHH
Q 009457           21 SGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSC---LLKFCDVEIVKIRSRSDMNTFH   97 (534)
Q Consensus        21 ~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~~g~t~Lh   97 (534)
                      .+..++.+.+...+......  .......+..++..|.||||+||++|+.+++++   |++.+  .+++..+..|.||||
T Consensus        56 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~  131 (346)
T d2ajaa1          56 KNMEQVRQLLCLYYAHYNRN--AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFR  131 (346)
T ss_dssp             SHHHHHHHHHHHHHHHTTTT--CTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHH
T ss_pred             ccHHHHHHHHHHcchhhccc--hhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHH
Confidence            33344555554443322111  112344567788999999999999999988776   56655  567888999999999


Q ss_pred             HHHHcCCHHHHHHHHhhCcccccc-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--cccccCCCcHHHHHHHcCCHH
Q 009457           98 VAAKKGHLGIAKELVSIWPELCKS-CDSSNTSPLYSAAVQDHLDVVNTILDADVSCT--RIVRKNGKTALHTAARYGLIN  174 (534)
Q Consensus        98 ~Aa~~g~~~iv~~Ll~~~~~l~~~-~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~g~~~  174 (534)
                      +|++.||.++|++|++.+++.... .+.+|.||||+|+..|+.+++++|++.++...  +..+.+|.||+|.|+++|+.+
T Consensus       132 ~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHH
Confidence            999999999999999999987322 23469999999999999999999999987642  344566788899999999999


Q ss_pred             HHHHHHhcCCccceec-------CCCCchHHHHHHhCCCHHHHHHhHhcCcc-cccccc-------CCCChHHHHHHHcC
Q 009457          175 IVTALIDRDPEIVTIK-------DKKGQTALHMAVKGQCPSVVEYILSADHL-ILNERD-------KKGNTAVHIATRKC  239 (534)
Q Consensus       175 iv~~Ll~~~~~~~~~~-------d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~-~in~~d-------~~g~T~Lh~A~~~~  239 (534)
                      ++++|++.+++. +..       ...+.++++.+...+..+....+...... ..+..+       ..+.++|+.|+..+
T Consensus       212 iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~  290 (346)
T d2ajaa1         212 VINFLLDCPVML-AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV  290 (346)
T ss_dssp             HHHHHTTSHHHH-HHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhCCCCc-chHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCC
Confidence            999999987653 221       12233455555544444443333322111 111112       23457899999999


Q ss_pred             CHHHHHHHhccCCcc----ccccccCCCCHHHHHHHccCCCCHHHHHHHHHHc
Q 009457          240 RPQIVSLLLSYTSID----VNAINNQRETAMDLADKLQYGDSTLEIKEALAEA  288 (534)
Q Consensus       240 ~~~iv~~Ll~~~g~~----~~~~n~~g~t~L~lA~~~~~~~~~~~i~~~L~~~  288 (534)
                      +.+++++|++.....    .+..+.+|+||||+|++  .|+.  +++++|++.
T Consensus       291 ~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~--~Gn~--e~v~lLL~~  339 (346)
T d2ajaa1         291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR--LGNQ--GACALLLSI  339 (346)
T ss_dssp             GHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH--HTCT--THHHHHTTS
T ss_pred             hHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHH--cCcH--HHHHHHhCC
Confidence            999999999864432    34456789999999999  8888  999999753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=197.27  Aligned_cols=153  Identities=24%  Similarity=0.373  Sum_probs=101.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH
Q 009457           94 NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLI  173 (534)
Q Consensus        94 t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  173 (534)
                      +|||+|+..|+.+++++|+++++++ +..|..|.||||+|+ .|+.+++++|++.+++ .+..+.+|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccc-cccccccCccccccccccccc
Confidence            5666666666666666666666665 555666666666554 5666666666666665 455666666666666666666


Q ss_pred             HHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          174 NIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       174 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      +.++.|++.+.+ .+..|..|.+|||+|+..++.+++++|+++++.+++.+|.+|.||||+|+..++.+++++|+++
T Consensus        80 ~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            666666666665 3556666667777777777777777766665556666666777777777777777777766663

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=195.29  Aligned_cols=154  Identities=23%  Similarity=0.239  Sum_probs=144.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH  138 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~  138 (534)
                      +|||+||..|+.++|+.|++++  .+++..|..|.||||+|+ .|+.+++++|+++++++ +..+..|.+||+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            8999999999999999999987  567889999999999886 78999999999999997 7789999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcC
Q 009457          139 LDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSAD  217 (534)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~  217 (534)
                      .+.++.|++.+.+ .+..|..|.+|+|+|+..++.+++++|+++++...+.+|..|+||||+|++.++.+++++|++++
T Consensus        79 ~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999887 67789999999999999999999999999998657889999999999999999999999999863

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5e-25  Score=193.44  Aligned_cols=152  Identities=20%  Similarity=0.334  Sum_probs=100.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH
Q 009457           94 NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLI  173 (534)
Q Consensus        94 t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  173 (534)
                      +.||.|+..|+.++++.|++.++...+..|..|.||||+|+ .|+.+++++|++.+.+ .+..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc-ccccccccccccccccccccc
Confidence            34666777777777776666544334566666777777664 3666667777766665 455566667777777777777


Q ss_pred             HHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCCHHHHHHHhcc
Q 009457          174 NIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCRPQIVSLLLSY  250 (534)
Q Consensus       174 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~~~iv~~Ll~~  250 (534)
                      ++++.+++.+++ ++.+|..|.||||+|++.|+.+++++|++  +.+++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-cccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            777777776666 36666677777777777777777766663  344566777777777777777777777777654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.7e-25  Score=192.61  Aligned_cols=152  Identities=23%  Similarity=0.245  Sum_probs=93.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      +.||.||..|+.+.|+.|++++...            ++..|..|.||||+|+ .|+.+++++|++.+  .+++..+..|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~------------~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~--~~~~~~~~~~   68 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH------------PDALNRFGKTALQVMM-FGSTAIALELLKQG--ASPNVQDTSG   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC------------TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTT--CCTTCCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC------------CCccCCCCCccccccc-cccccccccccccc--cccccccccc
Confidence            3466677677777777666654321            3455666666666665 35666666666654  3345555666


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL  172 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  172 (534)
                      .+|++.|+..++.+++++++++++++ +..|..|.||||+|+..|+.+++++|+ .+++ .+.+|.+|+||||+|++.|+
T Consensus        69 ~~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          69 TSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccccccccccccccccccc-ccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCC
Confidence            66666666666666666666666655 455666666666666666666666555 3444 45566666666666666666


Q ss_pred             HHHHHHHHhc
Q 009457          173 INIVTALIDR  182 (534)
Q Consensus       173 ~~iv~~Ll~~  182 (534)
                      .+++++|+++
T Consensus       146 ~~iv~~Ll~h  155 (156)
T d1bd8a_         146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            6666666653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.9e-24  Score=187.54  Aligned_cols=148  Identities=20%  Similarity=0.243  Sum_probs=77.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCC
Q 009457           13 QSFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSD   92 (534)
Q Consensus        13 t~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g   92 (534)
                      ||||.||+.|+.++|+.||+++++.              ..|..|.||||+|+..++.++++.++....  .....+..+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~--------------~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~   67 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF--------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGV--SRDARTKVD   67 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC--------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCCCTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc--------------ccccCCCccccccccccccccccccccccc--ccccccccc
Confidence            5555555555555555555555431              134455555555555555555555554431  122333444


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGL  172 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  172 (534)
                      .++++.++...+.++++++++.+.+. ...|..|.||||+|+..|+.+++++|++.+++ ++.+|.+|.||||+|+.+|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          68 RTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCC
Confidence            45555555555555555555555544 34455555555555555555555555555554 33455555555555555555


Q ss_pred             HHHHHH
Q 009457          173 INIVTA  178 (534)
Q Consensus       173 ~~iv~~  178 (534)
                      .+++++
T Consensus       146 ~eiv~l  151 (153)
T d1awcb_         146 EDLAEI  151 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.2e-24  Score=188.29  Aligned_cols=148  Identities=20%  Similarity=0.222  Sum_probs=72.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH  138 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~  138 (534)
                      ||||.||+.|+.++|+.|++++.  +.+ .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga--~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCC--Ccc-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            45555555555555555555442  111 3444555555555555555555555444443 2334444455555555555


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHH
Q 009457          139 LDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEY  212 (534)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~  212 (534)
                      .+++++++..+.+ .+.+|.+|.||||+|+..|+.+++++|++.+++ ++.+|.+|.||||+|+.+|+.+++++
T Consensus        80 ~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_          80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHh
Confidence            5555555554444 334445555555555555555555555555544 24445555555555555555555443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7.9e-25  Score=213.77  Aligned_cols=176  Identities=18%  Similarity=0.175  Sum_probs=125.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCH-------HHHHHHHhcCCCcccccccCCC
Q 009457           89 SRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHL-------DVVNTILDADVSCTRIVRKNGK  161 (534)
Q Consensus        89 ~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~-------~~v~~Ll~~~~~~~~~~d~~g~  161 (534)
                      |.+|+||||+|+..|+.+++++|+++++++ +.+|..|.||||.|+..++.       ++++++.+    .....|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhcccccC
Confidence            788999999999999999999999999998 67899999999999987652       34444433    2456788999


Q ss_pred             cHHHHHHHcCC----HH--------HHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhc--CccccccccCC
Q 009457          162 TALHTAARYGL----IN--------IVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSA--DHLILNERDKK  227 (534)
Q Consensus       162 tpLh~A~~~g~----~~--------iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~~in~~d~~  227 (534)
                      ||||.++..+.    ..        ++.++++.+..........+.++++.+........+..+...  ....+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            99999886543    22        344555555544455556677777777665555544433211  12347899999


Q ss_pred             CChHHHHHHHcCCHHHHHHHhccCCccccccccCCCCHHHHHH
Q 009457          228 GNTAVHIATRKCRPQIVSLLLSYTSIDVNAINNQRETAMDLAD  270 (534)
Q Consensus       228 g~T~Lh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~  270 (534)
                      |+||||+|++.|+.+++++|+++ |++++.+|+.|.||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999995 9999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.9e-22  Score=196.64  Aligned_cols=173  Identities=15%  Similarity=0.085  Sum_probs=115.1

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCH-------HHHHHHHhhCccccccCCCCC
Q 009457           54 NDTGETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHL-------GIAKELVSIWPELCKSCDSSN  126 (534)
Q Consensus        54 n~~g~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~-------~iv~~Ll~~~~~l~~~~d~~g  126 (534)
                      |..|+||||+||..|+.++|++|++.+  .+++.+|..|+||||.|+..++.       ++++++..    .....|..|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhccccc
Confidence            778889999999999999999999987  56778888899999998876642       34444432    235568888


Q ss_pred             CcHHHHHHHcCCH------------HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHH-----HHhcCCcccee
Q 009457          127 TSPLYSAAVQDHL------------DVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTA-----LIDRDPEIVTI  189 (534)
Q Consensus       127 ~tpLh~Aa~~g~~------------~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~-----Ll~~~~~~~~~  189 (534)
                      +||||+++..+..            .++.+++..+..........+.++++.+........+..     ++...   ++.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~  254 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM---LNA  254 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT---TTC
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccC
Confidence            8999888765431            244566666655555556666677776665554443332     23322   466


Q ss_pred             cCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHH
Q 009457          190 KDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIAT  236 (534)
Q Consensus       190 ~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~  236 (534)
                      +|..|+||||+|+++|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            788999999999999999999999986 5667999999999999885

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-22  Score=168.78  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=54.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCC-CcHHHHHHHc
Q 009457           58 ETALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSN-TSPLYSAAVQ  136 (534)
Q Consensus        58 ~T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g-~tpLh~Aa~~  136 (534)
                      .++||+|+..|+.++|++|++++  .+++..+..|.||||+|+ .|+.+++++|+++++++ +..|..+ .||||+|+..
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcC--Cccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            34455555555555555555443  233444444555554432 34455555555544444 2223332 2344444444


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Q 009457          137 DHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALI  180 (534)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  180 (534)
                      |+.+++++|++.+++ .+.+|.+|+||||+|++.|+.+++++|+
T Consensus        80 g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            444444444444444 3344444444444444444444444444

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.8e-22  Score=168.59  Aligned_cols=118  Identities=16%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC-cHHHHHHHcC
Q 009457           93 MNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGK-TALHTAARYG  171 (534)
Q Consensus        93 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g  171 (534)
                      .++||+|+..|+.+++++|+++++++ +..|..|.||||.|+ .|+.+++++|++.+++ .+.++..|. ||||+|++.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccc-cccccccccccccccccccc
Confidence            45566666666666666666665554 455556666665443 4556666666665555 333444433 4566666666


Q ss_pred             CHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhH
Q 009457          172 LINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYIL  214 (534)
Q Consensus       172 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll  214 (534)
                      +.+++++|++.+++ ++.+|..|+||||+|+++|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          81 FLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666655555 3555555555555555555555555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.4e-22  Score=168.72  Aligned_cols=107  Identities=22%  Similarity=0.237  Sum_probs=91.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCccceecCCCCchHHHHHHhCCCHHHHHHhHhcCccccccccCCCChHHHHHHHcCC
Q 009457          161 KTALHTAARYGLINIVTALIDRDPEIVTIKDKKGQTALHMAVKGQCPSVVEYILSADHLILNERDKKGNTAVHIATRKCR  240 (534)
Q Consensus       161 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~in~~d~~g~T~Lh~A~~~~~  240 (534)
                      .|||++|+++|+.++|++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. +.++|.+|.+|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCc
Confidence            3788888888888888888888887 578888888888888888888888888885 45668888889999999999999


Q ss_pred             HHHHHHHhccCCccccccccCCCCHHHHHH
Q 009457          241 PQIVSLLLSYTSIDVNAINNQRETAMDLAD  270 (534)
Q Consensus       241 ~~iv~~Ll~~~g~~~~~~n~~g~t~L~lA~  270 (534)
                      .+++++|++. |+|++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~~-Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSK-GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTT-CCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcc-cccceeeCCCCCCHHHHHh
Confidence            9999999884 8899999999999988774

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=4e-22  Score=165.83  Aligned_cols=105  Identities=25%  Similarity=0.290  Sum_probs=45.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH
Q 009457           94 NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLI  173 (534)
Q Consensus        94 t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  173 (534)
                      |||++|++.|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+++ .+.+|.+|+||||+|++.|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCch
Confidence            3444444444444444444444433 33344444444444444444444444444443 233444444444444444444


Q ss_pred             HHHHHHHhcCCccceecCCCCchHHHHH
Q 009457          174 NIVTALIDRDPEIVTIKDKKGQTALHMA  201 (534)
Q Consensus       174 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  201 (534)
                      +++++|++++++ ++.+|..|+||||+|
T Consensus        82 ~~v~~Ll~~Gad-~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD-KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC-SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc-ceeeCCCCCCHHHHH
Confidence            444444444444 244444444444443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.8e-21  Score=161.16  Aligned_cols=119  Identities=13%  Similarity=0.222  Sum_probs=66.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH
Q 009457           94 NTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLI  173 (534)
Q Consensus        94 t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  173 (534)
                      ++|+.|+..|+.+++++|+++++++ +.+|.+|.||||+|+..|+.+++++|++.+++ .+.+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            3455555555666666655555554 45555556666666666666666666555554 445555566666666666666


Q ss_pred             HHHHHHHhcCCccceecC-CCCchHHHHH--HhCCCHHHHHHhHh
Q 009457          174 NIVTALIDRDPEIVTIKD-KKGQTALHMA--VKGQCPSVVEYILS  215 (534)
Q Consensus       174 ~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~iv~~Ll~  215 (534)
                      +++++|+++++++ +..+ ..|+||++++  ++.|+.+++++|+.
T Consensus        81 ~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            6666666655553 3332 3355554433  34555666666654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.7e-21  Score=160.50  Aligned_cols=121  Identities=18%  Similarity=0.196  Sum_probs=79.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCChhhhhccCCCCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCC
Q 009457           59 TALYISAANNFQDIFSCLLKFCDVEIVKIRSRSDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDH  138 (534)
Q Consensus        59 T~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~  138 (534)
                      ++|+.|+..|+.++|++|++++  .+++.+|.+|+||||+|+..|+.+++++|++.+++. +..|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC--CCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            4666777777777777777665  445666667777777777777777777777776665 5566677777777777777


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHH--HHcCCHHHHHHHHhc
Q 009457          139 LDVVNTILDADVSCTRIVRKNGKTALHTA--ARYGLINIVTALIDR  182 (534)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A--~~~g~~~iv~~Ll~~  182 (534)
                      .+++++|+++|+++....+..|.||++++  +..|+.+++++|++.
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            77777777776663322334466665544  455667777777654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=9.3e-20  Score=158.39  Aligned_cols=128  Identities=16%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchHHHHHhcccCCCCcHHHHHHHc---CCHHHHHHHHhcCChhhhhccCC
Q 009457           14 SFFSAVRSGDLETLKNIIDNLTKDEAPDGSSLVSELMAMQNDTGETALYISAAN---NFQDIFSCLLKFCDVEIVKIRSR   90 (534)
Q Consensus        14 ~Lh~Aa~~G~~~~v~~ll~~~~~~~~~~~~~~~~~ll~~~n~~g~T~L~~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~   90 (534)
                      .|+.|++.+++..+..++..+.+...+       ......+..|+||||+|++.   |+.++|++|++++  .+++.+|.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~-------~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--adin~~d~   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEK-------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS--GNLDKQTG   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSB-------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC--SCTTCCCT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCC-------CCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC--CChhhhhh
Confidence            467899999999999999987653211       11223456788888888874   6778888888876  45777888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhhCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 009457           91 SDMNTFHVAAKKGHLGIAKELVSIWPELCKSCDSSNTSPLYSAAVQDHLDVVNTILDADVS  151 (534)
Q Consensus        91 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~  151 (534)
                      .|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+..|+.+++++|++.+..
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8888888888888888888888888887 67788888888888888888888888876544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=4.5e-19  Score=154.03  Aligned_cols=123  Identities=16%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCChh----hhhccCCCCCcHHHHHHHc---CCHHHHHHHHhhCccccccCCCCCCcHHHH
Q 009457           60 ALYISAANNFQDIFSCLLKFCDVE----IVKIRSRSDMNTFHVAAKK---GHLGIAKELVSIWPELCKSCDSSNTSPLYS  132 (534)
Q Consensus        60 ~L~~Aa~~g~~~iv~~Ll~~~~~~----~~~~~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~l~~~~d~~g~tpLh~  132 (534)
                      .|+.|++.+....+..++..+...    .....+..|+||||+|++.   |+.+++++|+++++++ +..|..|.||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            455666777777776666654110    1112245566777776653   4566677777666665 5566666777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 009457          133 AAVQDHLDVVNTILDADVSCTRIVRKNGKTALHTAARYGLINIVTALIDRDP  184 (534)
Q Consensus       133 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  184 (534)
                      |+..|+.+++++|++.+++ .+.+|.+|.||||+|++.|+.+++++|++.+.
T Consensus        88 A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            7776777777777666666 45566666666666666666666666666543