Citrus Sinensis ID: 009469

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHccccccccEEEEEccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEccccccEcccccEccccccEEccccccEEEEEcccccccHHHHHcccccccccccccccccEEEEEcccccccEEEcccccccccccccHHcccccccccccHHcccEEEEEEEccccccccccccHccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maigsliscrnfgsfvgsgklyekepvifqwkgersgISVLRNtqgnmwnqrlrspmanglisEHANRSMLHVWGNSDEKALKHIAnchtgkehplflqcnekfnriypwkrtnnkcecyfssrhslggwfqpkaedrigtrkgkspqsldvkEDRIcafyksdeyditeakvdslqsteipseavlpdgdlqetspwweqfpKRWVVVLLCFSAFLLCNMDRVNMSIAilpmskefnwnsttVGLIQSSFFWGYLLTQIVGgiwadkfggkpvlgFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMlskwipvsersrsLAFVYSGMYLGsvtglavspiliqkfgwpsvfysfgsLGSIWFALWLKKaysspkedpelrAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNltesglfcvlpwLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGflgpaffltqlshvrtpAMAVLCMACSQV
Flexible Loop (DISEMBL)
maigsliscrnfgsfvgsgklyEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSsrhslggwfqpkaedrigtrkgkspqsldvkeDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKrhilggsiskeavsvIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Low Complexity Region (SEG)
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Disordered region (IsUnstruct)
****SLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQ**********************DRICAFYKSDEYDITEA*********************QETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY****************ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC***
Disordered Region (DISOPRED)
***GS**SCRNFGSFV**********************SVLRNTQGNMWNQRLRSPMANGLISEHA************************************************************************************************************************************WEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP*LRA*********************KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Disordered Region (DISEMBL)
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIG*********LDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYS**********EEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Disordered Region (DISPRO)
*AIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPK*E***********************************************************SPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q8GX78	541	Probable anion transporte	yes	no	0.749	0.739	0.785	0.0
Q652N5	591	Probable anion transporte	yes	no	0.775	0.700	0.741	0.0
Q9SDI4	529	Probable anion transporte	no	no	0.623	0.629	0.822	1e-161
O82390	512	Sodium-dependent phosphat	no	no	0.651	0.679	0.770	1e-159
Q7XJR2	512	Probable anion transporte	no	no	0.689	0.718	0.393	3e-73
Q3E9A0	517	Probable anion transporte	no	no	0.616	0.636	0.414	2e-69
Q66GI9	533	Probable anion transporte	no	no	0.574	0.575	0.423	2e-68
Q8W0H5	519	Probable anion transporte	no	no	0.574	0.591	0.410	3e-67
Q53WP9	535	Probable anion transporte	no	no	0.614	0.613	0.412	5e-66
Q2QWW7	439	Probable anion transporte	no	no	0.619	0.753	0.359	3e-58

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/410 (78%), Positives = 359/410 (87%), Gaps = 10/410 (2%)

Query: 124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
           R S G + QP+ +  I  R         +K +R  A+YKS+E DITE  V S   +   +
Sbjct: 60  RRSFGCFLQPRMDSVIRFRN-------SIKINRSRAYYKSEESDITEGVVPSADGS---A 109

Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT 243
           EA+L +G+LQ  SPWW+QFP+RWV+VLLCFS+FLLCNMDRVNMSIAILPMS+E+NW+S T
Sbjct: 110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169

Query: 244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 303
           VGLIQSSFFWGYLLTQI+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct: 170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229

Query: 304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 363
           RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct: 230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289

Query: 364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 423
           SVFYSFGSLGSIWF LWLK AYSSPK+DP+L  EEK+ ILGGS  +E V+VIPWKLILSK
Sbjct: 290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349

Query: 424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 483
            PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct: 350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409

Query: 484 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQ
Sbjct: 410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQ 459

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/418 (74%), Positives = 350/418 (83%), Gaps = 4/418 (0%)

Query: 116 KCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDS 175
           + EC+ +S     GW +P+  D   +      Q       R  A  K+++Y+IT +    
Sbjct: 96  RIECFLTSDPINTGWLKPRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSP--- 152

Query: 176 LQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSK 235
           L  +++P+EAVL  GD  E SPWW+QFPKRW VVLLCF +FLLCNMDRVNMSIAILPMS 
Sbjct: 153 LSPSDVPAEAVL-IGDTNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSS 211

Query: 236 EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI 295
           EF W+  TVGLIQSSFFWGYLLTQI+GGIWAD+FGGK VLGFGV+WWS+ATVLTP+AA+I
Sbjct: 212 EFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKI 271

Query: 296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI 355
           GLPFLL+MRAFMGIGEGVAMPAMNN+LSKW+PVSERSRSLA VYSGMYLGSVTGLA SP+
Sbjct: 272 GLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPL 331

Query: 356 LIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVI 415
           LI +FGWPSVFY+FGSLGS+WFALW +KA+SSP EDPEL   EKR+ILGGS  KE V+ I
Sbjct: 332 LISRFGWPSVFYAFGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSI 391

Query: 416 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 475
           PWKLILSK PVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMA+
Sbjct: 392 PWKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAI 451

Query: 476 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           FAN+GGWIADTLV +G+SIT VRKIMQSIGFLGPA FLT LS VRTPAMAVLCMACSQ
Sbjct: 452 FANIGGWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQ 509

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  570 bits (1468), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/333 (82%), Positives = 292/333 (87%)

Query: 201 QFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQI 260
           QFPKRW +V LCFSAFLLCNMDRVNMSIAILPMS EF WN  TVGLIQSSFFWGYLLTQI
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174

Query: 261 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 320
            GGIWAD  GGK VLGFGVIWWS+AT LTP AA++GLPFLL+ RAFMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234

Query: 321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
           +LSKW+PVSERSRSLA VYSGMYLGSVTGLA SP+LI  FGWPSVFYSFGSLG  WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294

Query: 381 LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT 440
             KAYSSP EDP + AEEK+ I   +   E V  IPW LILSK PVWALI+SHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354

Query: 441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKI 500
           FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV AN GGWIADTLVS+GLS+T VRKI
Sbjct: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKI 414

Query: 501 MQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           MQSIGFLGPAFFLTQLSH+ +PAMAVLCMACSQ
Sbjct: 415 MQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQ 447

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  563 bits (1451), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/348 (77%), Positives = 296/348 (85%)

Query: 186 VLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVG 245
           V+ D       PWWE+FPKRWV+VLLCFSAFLLCNMDRVNMSIAILPMS E+ WN  TVG
Sbjct: 83  VVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVG 142

Query: 246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 305
           LIQSSFFWGYLLTQI GGIWAD  GGK VLGFGVIWWS+AT+LTPVAA++GLP+LL++RA
Sbjct: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRA 202

Query: 306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 365
           FMG+GEGVAMPAMNN+LSKW+PV ERSRSLA VYSGMYLGSVTGLA SP LI +FGWPSV
Sbjct: 203 FMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSV 262

Query: 366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 425
           FYSFGSLG++W  LWL KA SSP EDP L  EE++ I     SKE V  IPW+LILSK P
Sbjct: 263 FYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPP 322

Query: 426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 485
           VWALI  HFCHNWGTFILLTWMPTYY+QVLKFNL ESGL  V PW+TMA+ AN GGWIAD
Sbjct: 323 VWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIAD 382

Query: 486 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           TLVS+G S+T VRKIMQ+IGFLGPAFFLTQL H+ +P MAVLCMACSQ
Sbjct: 383 TLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQ 430

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 221/374 (59%), Gaps = 6/374 (1%)

Query: 162 KSDEYDITEAKVDSLQSTE-IPSEAVLPDGDLQET-SPWWEQFPKRWVVVLLCFSAFLLC 219
           +SD      A     QS E   +E VL  G   E  +      P+R  VV+L      LC
Sbjct: 53  ESDGKRRNAAAKKRNQSPERCAAEGVLTGGGGSEAIAEVRTMMPERIKVVILTACMMCLC 112

Query: 220 NMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGV 279
           N DRV MS+A++P++ +  W+S+ +G++QSSF WGY+ + ++GG   D++GGK VL +GV
Sbjct: 113 NADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGV 172

Query: 280 IWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 339
             WS+AT+LTP AA      LL +RAF G+ EGVAMP+M  +LS+W P+ ER+ ++    
Sbjct: 173 ALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISM 232

Query: 340 SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 399
           +G ++G+V GL ++P+++   G    F  F SLG +W + W     ++P++ P +   E 
Sbjct: 233 AGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSEL 292

Query: 400 RHILGGS-ISKEAVSVIP---WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL 455
           R I  G  +    +S  P    +L+LSK P WA+I ++  +NWG F+LL+WMP Y+  V 
Sbjct: 293 RLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVF 352

Query: 456 KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ 515
             NL ++  F  LPW TMA+     G  +D L+  G S+T+VRKIMQSIGF+GP   L  
Sbjct: 353 NVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLC 412

Query: 516 LSHVRTPAMAVLCM 529
           L+  ++P+ A + M
Sbjct: 413 LNFAKSPSCAAVFM 426

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/333 (41%), Positives = 203/333 (60%), Gaps = 4/333 (1%)

Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT 243
           E +  +   ++  P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+S+ 
Sbjct: 77  EVLSTETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSV 136

Query: 244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 303
            GL+QSSFFWGY L+Q+ GG  +  FGG+ VL  GV  WS AT L P+ A   +P L+  
Sbjct: 137 AGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFS 195

Query: 304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 363
           R  +GIGEGV+  A  +++++ IPV ERSR++ FV+ G+ LGSV GL ++P +I+ F W 
Sbjct: 196 RILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWE 255

Query: 364 SVFYSFGSLGSIWFA--LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL 421
           SVFY FG LG  WF    +L +   S K + E+    K           ++  IPWK   
Sbjct: 256 SVFYLFGLLGVGWFVGFQFLNEEEVSYKGN-EISTSHKSENATKEELGSSLKEIPWKSFF 314

Query: 422 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 481
               VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+    +LP L   V  ++  
Sbjct: 315 QSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLAS 374

Query: 482 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT 514
             AD L++ G+  T VRKI Q+I F+ PA  +T
Sbjct: 375 QFADYLITNGVDTTTVRKICQTIAFVAPAICMT 407

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/314 (42%), Positives = 195/314 (62%), Gaps = 7/314 (2%)

Query: 219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG 278
           CN DRV MS+AI+P+S    W+ +  G++QSSF WGYL++ I GG   D++GGK V+ +G
Sbjct: 125 CNADRVVMSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWG 184

Query: 279 VIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV 338
           V  WS+AT LTP AA   L  LL  RA +G+ EGVA+P MNNM+++W P +ERSR++   
Sbjct: 185 VALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPPTERSRAVGIA 244

Query: 339 YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 398
            +G  LG+V GL +SPIL+ + G    F  FG  G +W  +WL    S+P   P++   E
Sbjct: 245 MAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSE 304

Query: 399 KRHILG----GSISKEAVS---VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY 451
             +I       ++  + +S   + P+  +LSK P WA+I+++  H+WG F++L+WMP Y+
Sbjct: 305 LEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYF 364

Query: 452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAF 511
           N V   NL ++  F  +PW  MA    + G+ +D L+ +G SIT  RKIMQSIGF+GP  
Sbjct: 365 NSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGI 424

Query: 512 FLTQLSHVRTPAMA 525
            L  L+  + P +A
Sbjct: 425 ALIGLTTAKQPLVA 438

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/314 (41%), Positives = 191/314 (60%), Gaps = 7/314 (2%)

Query: 219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG 278
           CN DRV MS+AI+P+S+ + W  +  G++QSSF WGYL++ I+GG   D +GGK V+ +G
Sbjct: 111 CNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYG 170

Query: 279 VIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV 338
           V  WS+AT L+P AA   L   L  R  +G+ EGVA+P+MNNM+ +W P +ERS ++   
Sbjct: 171 VALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230

Query: 339 YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 398
            +G  LG+  GL +SPI++ + G    F  FG  G +W  +W+     +P E+ ++ A E
Sbjct: 231 MAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHE 290

Query: 399 KRHILGG-------SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY 451
             +I  G       S  +    V P+  +LSK P WALI ++  H+WG F++L+WMP Y+
Sbjct: 291 LDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYF 350

Query: 452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAF 511
             +   NL E+  F  LPW+ MAV   + G ++D L+  G SIT  RKIMQ+IGF+GP  
Sbjct: 351 KTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGV 410

Query: 512 FLTQLSHVRTPAMA 525
            L  L+  ++P +A
Sbjct: 411 ALLGLNAAKSPVIA 424

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  252 bits (643), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 136/330 (41%), Positives = 195/330 (59%), Gaps = 2/330 (0%)

Query: 202 FPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIV 261
            P+R  VV L  +  LLCN DRV MS+A++P + ++ W+S+ +G++QSSF WGY+ + +V
Sbjct: 119 LPERAKVVALVAAVMLLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMV 178

Query: 262 GGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 321
           GG  AD++GGK V+      WS+AT LTP AA      LL +RA  G+ EGVA P M+  
Sbjct: 179 GGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTF 238

Query: 322 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL 381
           L KW P  ER+ ++     G +LG+V     +PI++   G    F  F SLG +W ++WL
Sbjct: 239 LPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWL 298

Query: 382 KKAYSSPKEDPELRAEEKRHILGG-SISKEAVSVIP-WKLILSKAPVWALIISHFCHNWG 439
               S P +   +   E + IL G S SK   S  P  + ILSK  +WA+I+++  +NWG
Sbjct: 299 FNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWG 358

Query: 440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 499
            F+LL+WMP Y+  V   NL ++  F  +PW  MA+   + G  AD L+  G S+  VRK
Sbjct: 359 YFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRK 418

Query: 500 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCM 529
           IMQSIGF+GP   L  L   +TP++A + M
Sbjct: 419 IMQSIGFIGPGVSLLCLRFAQTPSVAAVLM 448

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1

 Score =  226 bits (576), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 198/339 (58%), Gaps = 8/339 (2%)

Query: 201 QFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQI 260
           +FPKR+V+VLL F    +C ++RV  SIA    +     N    G+I S F++GY+L+QI
Sbjct: 8   KFPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQI 67

Query: 261 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 320
            GG  A + GG+ VL    + WS+   L P+  +  +  L++ R F+G+ +G   PA++ 
Sbjct: 68  PGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGFIFPAIHT 126

Query: 321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
           +L++W+P  ERSRS++   SGMYLG+  G+   P L++  G  SVF+    LG  W  +W
Sbjct: 127 VLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIW 186

Query: 381 LKKAYSSPKED------PELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF 434
           LK +   P+ D      P++ + EK     G +       IPW+ I+   PVWA+++++F
Sbjct: 187 LKFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVKIPWRRIIFSLPVWAIVVNNF 246

Query: 435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LS 493
             ++  ++L+ W+PTY+   L+ +L + G   +LP+  M +F+N+GG +AD L+++  LS
Sbjct: 247 TFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILS 306

Query: 494 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS 532
           IT  RK++ +IGF+  A  L  L   RTP+  VLC + S
Sbjct: 307 ITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSIS 345

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
225454266	615	PREDICTED: probable anion transporter 2,	0.994	0.863	0.734	0.0
255541620	571	Sialin, putative [Ricinus communis] gi|2	0.915	0.856	0.720	0.0
297745310	575	unnamed protein product [Vitis vinifera]	0.919	0.853	0.700	0.0
356520396	592	PREDICTED: probable anion transporter 2,	0.940	0.847	0.674	0.0
356504368	593	PREDICTED: probable anion transporter 2,	0.953	0.858	0.671	0.0
449432150	600	PREDICTED: probable anion transporter 2,	0.962	0.856	0.677	0.0
449480201	600	PREDICTED: probable anion transporter 2,	0.962	0.856	0.677	0.0
357514559	507	Sodium-dependent phosphate transport pro	0.945	0.996	0.664	0.0
357514557	588	Sodium-dependent phosphate transport pro	0.943	0.857	0.663	0.0
356576959	597	PREDICTED: probable anion transporter 2,	0.960	0.859	0.667	0.0

>gi|225454266|ref|XP_002275090.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Vitis vinifera]

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/535 (73%), Positives = 430/535 (80%), Gaps = 4/535 (0%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIG +IS RNFGSF+GSGK Y+ EP   Q KG R   SV  + + N   +RL   M N 
Sbjct: 1   MAIGGVISNRNFGSFIGSGKGYQTEPATAQNKGGRLSFSVAGHVRENY--KRLFMQMENY 58

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
            IS +++   L V G+ D KAL  IA  H       P+ LQ ++KF  + P +R    C+
Sbjct: 59  SISRYSHFPCLRVIGSPDGKALTSIATFHVEGVCCLPMSLQSSDKFWSVNPRRRIQGICK 118

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS  SL  W QP    R+G    +S  S  V+  R  + YKS EYDI  A VDSL+S
Sbjct: 119 CYLSSNPSLSSWIQPSKRARLGISDSQSQSSEHVRFGRTRSAYKSKEYDIKGADVDSLKS 178

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           +E   E +L + +LQ  SPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 179 SEGAGEVILAEENLQSVSPWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 238

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGVIWWSVATVLTP+AARIGLP
Sbjct: 239 WNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVIWWSVATVLTPIAARIGLP 298

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           FLL MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLAVSP LIQ
Sbjct: 299 FLLTMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAVSPALIQ 358

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL KAYSSP EDPEL  EEKR ILGGS SKE VS IPWK
Sbjct: 359 KFGWPSVFYSFGSLGSIWFALWLSKAYSSPAEDPELSEEEKRVILGGSTSKEPVSSIPWK 418

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 478

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           +GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQL ++RTPA+AVLCMACSQ
Sbjct: 479 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLGNIRTPALAVLCMACSQ 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541620|ref|XP_002511874.1| Sialin, putative [Ricinus communis] gi|223549054|gb|EEF50543.1| Sialin, putative [Ricinus communis]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/533 (72%), Positives = 420/533 (78%), Gaps = 44/533 (8%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIGSLIS RN GSF+GSGK+  +E  I Q KGER  I+  R   GN++ ++  S MA  
Sbjct: 1   MAIGSLISNRNLGSFIGSGKV--REQAILQHKGERPSIAAARFAHGNIFYRKCHSQMAIS 58

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
             S  +   +L V  +S EK  K +A                      P +R+  +C C 
Sbjct: 59  YTSGFSCSPVLRVTNHSSEKTSKSLA---------------------VPLQRSLGRCNC- 96

Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTE 180
            SS   +G W Q          KG+      VK +R  A YKS+EYDIT       Q+ E
Sbjct: 97  -SSYPFVGNWLQ--------LTKGQFQHFEFVKVNRTRAHYKSEEYDIT-------QAAE 140

Query: 181 IPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWN 240
             SEAVL +G+L    PWWEQFPKRWV+VLLCF AFLLCNMDRVNMSIAILPMS+EFNWN
Sbjct: 141 GSSEAVLVEGNL----PWWEQFPKRWVIVLLCFMAFLLCNMDRVNMSIAILPMSQEFNWN 196

Query: 241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL 300
           S TVGLIQSSFFWGYL+TQIVGGIWADK GGK VLGFGV+WWS+ATVLTP+AARIGLPFL
Sbjct: 197 SATVGLIQSSFFWGYLMTQIVGGIWADKIGGKLVLGFGVVWWSIATVLTPIAARIGLPFL 256

Query: 301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF 360
           L+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSV GLAVSP+LIQKF
Sbjct: 257 LMMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVMGLAVSPVLIQKF 316

Query: 361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLI 420
           GWPSVFYSFGSLGSIWFALWL+KAYSSPKEDPEL A+EK+ ILGGS+SKE VSVIPWKLI
Sbjct: 317 GWPSVFYSFGSLGSIWFALWLRKAYSSPKEDPELSAQEKKLILGGSVSKEPVSVIPWKLI 376

Query: 421 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 480
           LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA FAN+G
Sbjct: 377 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFFANIG 436

Query: 481 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ
Sbjct: 437 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 489

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745310|emb|CBI40390.3| unnamed protein product [Vitis vinifera]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/535 (70%), Positives = 407/535 (76%), Gaps = 44/535 (8%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIG +IS RNFGSF+GSGK Y+ EP   Q KG R   SV  + + N   +RL   M N 
Sbjct: 1   MAIGGVISNRNFGSFIGSGKGYQTEPATAQNKGGRLSFSVAGHVRENY--KRLFMQMENY 58

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
            IS +++   L V G+ D KAL  IA  H       P+ LQ ++KF  + P +R    C+
Sbjct: 59  SISRYSHFPCLRVIGSPDGKALTSIATFHVEGVCCLPMSLQSSDKFWSVNPRRRIQGICK 118

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS  SL  W QP    R+                                       
Sbjct: 119 CYLSSNPSLSSWIQPSKRARL--------------------------------------- 139

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
            E   E +L + +LQ  SPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 140 -EGAGEVILAEENLQSVSPWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 198

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGVIWWSVATVLTP+AARIGLP
Sbjct: 199 WNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVIWWSVATVLTPIAARIGLP 258

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           FLL MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLAVSP LIQ
Sbjct: 259 FLLTMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAVSPALIQ 318

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL KAYSSP EDPEL  EEKR ILGGS SKE VS IPWK
Sbjct: 319 KFGWPSVFYSFGSLGSIWFALWLSKAYSSPAEDPELSEEEKRVILGGSTSKEPVSSIPWK 378

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 379 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 438

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           +GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQL ++RTPA+AVLCMACSQ
Sbjct: 439 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLGNIRTPALAVLCMACSQ 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520396|ref|XP_003528848.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max]

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/541 (67%), Positives = 410/541 (75%), Gaps = 39/541 (7%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKG--ERSGISVLRNTQGNMWNQRLRSPMA 58
           M +  LIS RNF SF  SG +Y     I   +G    SG+SV ++     W  ++  P+ 
Sbjct: 1   MTMTGLISNRNFASFFASGNVYRSGKDISVQRGGISISGVSVAKDPFPR-WQHKMYLPL- 58

Query: 59  NGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFL-----QCNEKFNRIYPWKRT 113
                              +E+  K +   +   EH   +     QCN K        + 
Sbjct: 59  -------------------EERVSKQMQTSNNKGEHRSLVSQQSSQCNFKL-------KA 92

Query: 114 NNKCECYFSSRHSLGGWFQPKAE-DRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAK 172
           + +  C F      G       E  R+G  K K  Q+   K ++    YKS+EYDI+E K
Sbjct: 93  SGRSRCSFLCSAPYGTNNVGHGEVYRLGLSKRKHAQTEVGKTNKFRVCYKSEEYDISETK 152

Query: 173 VDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILP 232
           +D LQSTE   EA+L +G     SPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILP
Sbjct: 153 MDPLQSTEGTGEAILLEG---RASPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILP 209

Query: 233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA 292
           MS+EFNWNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGV+WWS+ATVLTP+A
Sbjct: 210 MSQEFNWNSATVGLIQSSFFWGYLLTQIIGGIWADKLGGKLVLGFGVVWWSIATVLTPIA 269

Query: 293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV 352
           A++GLP LLIMRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLA 
Sbjct: 270 AKLGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAF 329

Query: 353 SPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAV 412
           SPILIQKFGWPSVFYSFGSLGSIWF LWL KAYSSPKEDP+L AEEK+ ILGG++SKE V
Sbjct: 330 SPILIQKFGWPSVFYSFGSLGSIWFVLWLSKAYSSPKEDPDLGAEEKKLILGGNVSKEPV 389

Query: 413 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
           SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT
Sbjct: 390 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 449

Query: 473 MAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS 532
           MA+FAN+GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQLSHV+TPAMAVLCMACS
Sbjct: 450 MAIFANIGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACS 509

Query: 533 Q 533
           Q
Sbjct: 510 Q 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504368|ref|XP_003520968.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/535 (67%), Positives = 404/535 (75%), Gaps = 26/535 (4%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYE--KEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMA 58
           M +  LIS RNFGSFV SG +Y   K+  + +     SG+SV ++     W  ++  PM 
Sbjct: 1   MTMSGLISNRNFGSFVASGNVYRSGKDISVQRMGISVSGVSVAKDPSPR-WQHQMYLPM- 58

Query: 59  NGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCE 118
                              +++  K +   H   EH   +         +  K       
Sbjct: 59  -------------------EKRVSKPMQTSHNKGEHRSLVSQQSSQCLNFKLKACGRSHS 99

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
            +  S          +   R+G  K K  ++   K ++    YKS+EYDI+E K+D LQS
Sbjct: 100 SFLFSAPYGSNNVGHQEVYRLGLSKRKHAKTEVGKANKFRVCYKSEEYDISETKMDPLQS 159

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           TE   EA+L +G      PWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 160 TEGTGEAILLEG---RALPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQEFN 216

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQIVGGIWADK GGK VLGFGV+WWS+ATVLTP+AA+ GLP
Sbjct: 217 WNSATVGLIQSSFFWGYLLTQIVGGIWADKLGGKLVLGFGVVWWSIATVLTPIAAKFGLP 276

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
            LLIMRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LIQ
Sbjct: 277 CLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLIQ 336

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWF LWL KAYSSP EDP+L AEEK+ ILGG++SKE VSVIPWK
Sbjct: 337 KFGWPSVFYSFGSLGSIWFVLWLSKAYSSPDEDPDLGAEEKKFILGGNVSKEPVSVIPWK 396

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA+FAN
Sbjct: 397 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAIFAN 456

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           +GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ
Sbjct: 457 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432150|ref|XP_004133863.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Cucumis sativus]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/537 (67%), Positives = 401/537 (74%), Gaps = 23/537 (4%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIGSL+S RN GSFVGSGK+ + E        ERS I   +  Q N+++++      N 
Sbjct: 1   MAIGSLVSNRNLGSFVGSGKVCKTEKASSHHGVERSVIFAAQYGQPNLFSRKSIGLRLNS 60

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
              + A  + L      D K  K +  C      P              W R   KC CY
Sbjct: 61  SSPKIACSTFLQSI-TRDGKLFKPLGVCTDETAGPRLPFIKSTIT----WPR--RKCRCY 113

Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKS----PQSLDVKEDRICAFYKSDEYDITEAKVDSL 176
                       P+         G S     +S  VK DR  A YKS+++D+T+  VD+L
Sbjct: 114 ------------PQCTSACILTNGPSWLQCQKSQYVKVDRTSANYKSNDFDMTKGDVDAL 161

Query: 177 QSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKE 236
              E   +A   + + Q  SPWWE FPKRWV+VLLCF +FLLCNMDRVNMSIAILPMSKE
Sbjct: 162 ALAEGSGDAFFMEENEQIVSPWWESFPKRWVIVLLCFFSFLLCNMDRVNMSIAILPMSKE 221

Query: 237 FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG 296
           FNWNS TVGLIQSSFFWGYLLTQIVGGIWADK GGK VLGFGV+WWS+AT+LTP+AA+IG
Sbjct: 222 FNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATILTPIAAKIG 281

Query: 297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 356
           LPFLL+MRAFMGIGEGVAMPAMNN++SKWIPVSERSRSLA VYSGMYLGSVTGLA SPIL
Sbjct: 282 LPFLLMMRAFMGIGEGVAMPAMNNIISKWIPVSERSRSLALVYSGMYLGSVTGLAFSPIL 341

Query: 357 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP 416
           I KFGWPSVFYSFGSLGSIWFALWL KAYSSPKEDP L A+EK+ I  GSISKE V VIP
Sbjct: 342 IHKFGWPSVFYSFGSLGSIWFALWLTKAYSSPKEDPGLSAKEKKIIFDGSISKEPVKVIP 401

Query: 417 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 476
           WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF
Sbjct: 402 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 461

Query: 477 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           AN+GGWIADTLVS+G SIT VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ
Sbjct: 462 ANIGGWIADTLVSRGFSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480201|ref|XP_004155828.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Cucumis sativus]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/537 (67%), Positives = 401/537 (74%), Gaps = 23/537 (4%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MAIGSL+S RN GSFVGSGK+ + E        ERS I   +  Q N+++++      N 
Sbjct: 1   MAIGSLVSNRNLGSFVGSGKVCKTEKASSHHGVERSVIFAAQYGQPNLFSRKSIGLRLNS 60

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
              + A  + L      D K  K +  C      P              W R   KC CY
Sbjct: 61  SSPKIACFTFLQSI-TRDGKLFKPLGVCTDETAGPRL----PFIKSTITWPR--RKCRCY 113

Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKS----PQSLDVKEDRICAFYKSDEYDITEAKVDSL 176
                       P+         G S     +S  VK DR  A YKS+++D+T+  VD+L
Sbjct: 114 ------------PQCTSACILTNGPSWLQCQKSQYVKVDRTSANYKSNDFDMTKGDVDAL 161

Query: 177 QSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKE 236
              E   +A   + + Q  SPWWE FPKRWV+VLLCF +FLLCNMDRVNMSIAILPMSKE
Sbjct: 162 ALAEGSGDAFFMEENEQIVSPWWESFPKRWVIVLLCFFSFLLCNMDRVNMSIAILPMSKE 221

Query: 237 FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG 296
           FNWNS TVGLIQSSFFWGYLLTQIVGGIWADK GGK VLGFGV+WWS+AT+LTP+AA+IG
Sbjct: 222 FNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATILTPIAAKIG 281

Query: 297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 356
           LPFLL+MRAFMGIGEGVAMPAMNN++SKWIPVSERSRSLA VYSGMYLGSVTGLA SPIL
Sbjct: 282 LPFLLMMRAFMGIGEGVAMPAMNNIISKWIPVSERSRSLALVYSGMYLGSVTGLAFSPIL 341

Query: 357 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP 416
           I KFGWPSVFYSFGSLGSIWFALWL KAYSSPKEDP L A+EK+ I  GSISKE V VIP
Sbjct: 342 IHKFGWPSVFYSFGSLGSIWFALWLTKAYSSPKEDPGLSAKEKKIIFDGSISKEPVKVIP 401

Query: 417 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 476
           WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF
Sbjct: 402 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 461

Query: 477 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           AN+GGWIADTLVS+G SIT VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ
Sbjct: 462 ANIGGWIADTLVSRGFSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514559|ref|XP_003627568.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355521590|gb|AET02044.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/536 (66%), Positives = 404/536 (75%), Gaps = 31/536 (5%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MA+  LIS RNFGSF+ SG  Y  +  I     +R GISV   T       R    +A G
Sbjct: 1   MAMSGLISNRNFGSFIASGNSYRSQKDISH---QRVGISVSGVTV-----TRCGGCVAKG 52

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
            +S   N +  H+    +E+  K I      +E   PL  QC+   N      +      
Sbjct: 53  SLSRCPNATRSHIDSPLEERVSKQIQTFDNKRELFSPLSRQCSRGLNIKL---KACKISH 109

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS        + +  ++   R                  YK++EY+  E  +D LQ 
Sbjct: 110 CYLSSSTFSSSNVEQRKANKFQVR------------------YKAEEYEFAEPNIDGLQP 151

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           T+   EA+L +G+L +TSPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS++FN
Sbjct: 152 TDGTGEAILLEGNLLQTSPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQQFN 211

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI GGIWADK GGK VLGFGV+WWS+ATVLTP+AA++GLP
Sbjct: 212 WNSATVGLIQSSFFWGYLLTQIAGGIWADKVGGKLVLGFGVVWWSIATVLTPIAAKLGLP 271

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           +LL+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGL  SP LIQ
Sbjct: 272 YLLVMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLGFSPFLIQ 331

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL+ AYS+PK+DP L  EEKR ILGG++SKE V+VIPWK
Sbjct: 332 KFGWPSVFYSFGSLGSIWFALWLRNAYSTPKDDPNLGDEEKRLILGGNVSKEPVTVIPWK 391

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 392 LILSKAPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 451

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQV 534
           +GGWIADTLVSKG SIT VRKIMQSIGFLGPAFFLTQLS+VRTPAMAVLCMACSQV
Sbjct: 452 IGGWIADTLVSKGFSITTVRKIMQSIGFLGPAFFLTQLSNVRTPAMAVLCMACSQV 507

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514557|ref|XP_003627567.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355521589|gb|AET02043.1| Sodium-dependent phosphate transport protein [Medicago truncatula]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/535 (66%), Positives = 403/535 (75%), Gaps = 31/535 (5%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MA+  LIS RNFGSF+ SG  Y  +  I     +R GISV   T       R    +A G
Sbjct: 1   MAMSGLISNRNFGSFIASGNSYRSQKDISH---QRVGISVSGVTV-----TRCGGCVAKG 52

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
            +S   N +  H+    +E+  K I      +E   PL  QC+   N      +      
Sbjct: 53  SLSRCPNATRSHIDSPLEERVSKQIQTFDNKRELFSPLSRQCSRGLNIKL---KACKISH 109

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
           CY SS        + +  ++   R                  YK++EY+  E  +D LQ 
Sbjct: 110 CYLSSSTFSSSNVEQRKANKFQVR------------------YKAEEYEFAEPNIDGLQP 151

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           T+   EA+L +G+L +TSPWW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS++FN
Sbjct: 152 TDGTGEAILLEGNLLQTSPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQQFN 211

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI GGIWADK GGK VLGFGV+WWS+ATVLTP+AA++GLP
Sbjct: 212 WNSATVGLIQSSFFWGYLLTQIAGGIWADKVGGKLVLGFGVVWWSIATVLTPIAAKLGLP 271

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
           +LL+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGL  SP LIQ
Sbjct: 272 YLLVMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLGFSPFLIQ 331

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL+ AYS+PK+DP L  EEKR ILGG++SKE V+VIPWK
Sbjct: 332 KFGWPSVFYSFGSLGSIWFALWLRNAYSTPKDDPNLGDEEKRLILGGNVSKEPVTVIPWK 391

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 392 LILSKAPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 451

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           +GGWIADTLVSKG SIT VRKIMQSIGFLGPAFFLTQLS+VRTPAMAVLCMACSQ
Sbjct: 452 IGGWIADTLVSKGFSITTVRKIMQSIGFLGPAFFLTQLSNVRTPAMAVLCMACSQ 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576959|ref|XP_003556597.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/535 (66%), Positives = 403/535 (75%), Gaps = 22/535 (4%)

Query: 1   MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
           MA+G L+S RNF  F+G G +Y+    +     +R GIS         +  R    +A  
Sbjct: 1   MALGGLVSNRNFTCFIGPGSVYQLGKDL---SPQRGGISC-------AFVARYGGQIAKD 50

Query: 61  LISEHANRSMLHVWGNSDEKALKHIANCHTGKEH--PLFLQCNEKFNRIYPWKRTNNKCE 118
             S   +    H     +EK  K I   H   +H  PL  +     N      + + +C+
Sbjct: 51  PFSRCWHGMCFHAKEPLNEKVSKPIPTFHDEVQHCSPLSQKSIHCMNMKL---KASRRCQ 107

Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
            + SS        Q +A   +G  K     +  V        YKS+E+DITEAKVD L+S
Sbjct: 108 YFLSSDPYSSSLIQQRAVYGLGLNKLGKANTARVH-------YKSEEHDITEAKVDPLES 160

Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN 238
           TE   E++L +G++ + S WW+QFPKRWV+VLLCF+AFLLCNMDRVNMSIAILPMS+EFN
Sbjct: 161 TEGTGESILLEGNVPQVSSWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 220

Query: 239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 298
           WNS TVGLIQSSFFWGYLLTQI+GGIWADK GGK VLGFGV+WWS+ATVLTP+AARIGLP
Sbjct: 221 WNSATVGLIQSSFFWGYLLTQILGGIWADKIGGKLVLGFGVVWWSMATVLTPIAARIGLP 280

Query: 299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
            LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSV GLA SP+LIQ
Sbjct: 281 CLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVVGLAFSPLLIQ 340

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 418
           KFGWPSVFYSFGSLGSIWFALWL+KAYSSPK+DP+L  EEKR IL G++S   VS IPWK
Sbjct: 341 KFGWPSVFYSFGSLGSIWFALWLRKAYSSPKDDPDLGVEEKRLILEGNVSNAPVSSIPWK 400

Query: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 478
           LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNL ESGL CVLPWLTMA FAN
Sbjct: 401 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLMESGLLCVLPWLTMAAFAN 460

Query: 479 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
           +GGWIADTLV KGLSIT VRKIMQSIGFLGPAFFL+QLSHVRTPAMAVLCMACSQ
Sbjct: 461 IGGWIADTLVRKGLSITVVRKIMQSIGFLGPAFFLSQLSHVRTPAMAVLCMACSQ 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.749	0.739	0.785	1.6e-182
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.651	0.679	0.770	2.3e-151
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.661	0.689	0.401	7.5e-73
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.625	0.646	0.423	9.9e-71
UNIPROTKB|Q9NRA2	495	SLC17A5 "Sialin" [Homo sapiens	0.520	0.561	0.414	2.9e-62
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.518	0.572	0.413	1.3e-61
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.556	0.6	0.394	4.2e-61
RGD|1311388	495	Slc17a5 "solute carrier family	0.513	0.553	0.412	4.8e-60
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.520	0.561	0.404	7.8e-60
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.520	0.561	0.404	8.8e-59

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1715 (608.8 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
 Identities = 322/410 (78%), Positives = 359/410 (87%)

Query:   124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
             R S G + QP+ +  I  R         +K +R  A+YKS+E DITE  V S   +   +
Sbjct:    60 RRSFGCFLQPRMDSVIRFRNS-------IKINRSRAYYKSEESDITEGVVPSADGS---A 109

Query:   184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT 243
             EA+L +G+LQ  SPWW+QFP+RWV+VLLCFS+FLLCNMDRVNMSIAILPMS+E+NW+S T
Sbjct:   110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169

Query:   244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 303
             VGLIQSSFFWGYLLTQI+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct:   170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229

Query:   304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 363
             RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct:   230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289

Query:   364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 423
             SVFYSFGSLGSIWF LWLK AYSSPK+DP+L  EEK+ ILGGS  +E V+VIPWKLILSK
Sbjct:   290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349

Query:   424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 483
              PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct:   350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409

Query:   484 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
             ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQ
Sbjct:   410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQ 459

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
 Identities = 268/348 (77%), Positives = 296/348 (85%)

Query:   186 VLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVG 245
             V+ D       PWWE+FPKRWV+VLLCFSAFLLCNMDRVNMSIAILPMS E+ WN  TVG
Sbjct:    83 VVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVG 142

Query:   246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 305
             LIQSSFFWGYLLTQI GGIWAD  GGK VLGFGVIWWS+AT+LTPVAA++GLP+LL++RA
Sbjct:   143 LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRA 202

Query:   306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 365
             FMG+GEGVAMPAMNN+LSKW+PV ERSRSLA VYSGMYLGSVTGLA SP LI +FGWPSV
Sbjct:   203 FMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSV 262

Query:   366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 425
             FYSFGSLG++W  LWL KA SSP EDP L  EE++ I     SKE V  IPW+LILSK P
Sbjct:   263 FYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPP 322

Query:   426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 485
             VWALI  HFCHNWGTFILLTWMPTYY+QVLKFNL ESGL  V PW+TMA+ AN GGWIAD
Sbjct:   323 VWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIAD 382

Query:   486 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 533
             TLVS+G S+T VRKIMQ+IGFLGPAFFLTQL H+ +P MAVLCMACSQ
Sbjct:   383 TLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQ 430

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 144/359 (40%), Positives = 217/359 (60%)

Query:   177 QSTE-IPSEAVLPDGDLQET-SPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMS 234
             QS E   +E VL  G   E  +      P+R  VV+L      LCN DRV MS+A++P++
Sbjct:    68 QSPERCAAEGVLTGGGGSEAIAEVRTMMPERIKVVILTACMMCLCNADRVVMSVAVVPLA 127

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
              +  W+S+ +G++QSSF WGY+ + ++GG   D++GGK VL +GV  WS+AT+LTP AA 
Sbjct:   128 DKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAA 187

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
                  LL +RAF G+ EGVAMP+M  +LS+W P+ ER+ ++    +G ++G+V GL ++P
Sbjct:   188 HSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTP 247

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGS-ISKEAVS 413
             +++   G    F  F SLG +W + W     ++P++ P +   E R I  G  +    +S
Sbjct:   248 LMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTIS 307

Query:   414 VIP---WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPW 470
               P    +L+LSK P WA+I ++  +NWG F+LL+WMP Y+  V   NL ++  F  LPW
Sbjct:   308 PKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPW 367

Query:   471 LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM 529
              TMA+     G  +D L+  G S+T+VRKIMQSIGF+GP   L  L+  ++P+ A + M
Sbjct:   368 ATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFM 426

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 145/342 (42%), Positives = 209/342 (61%)

Query:   181 IPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWN 240
             IP E +  +   ++  P W+  P+R+ ++     AF++CNMD+VN+SIAI+PMS +F W+
Sbjct:    75 IP-EVLSTETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWS 133

Query:   241 STTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPF 299
             S+  GL+QSSFFWGY L+Q+ GG W  K FGG+ VL  GV  WS AT L P+ A   +P 
Sbjct:   134 SSVAGLVQSSFFWGYALSQLPGG-WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPG 191

Query:   300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK 359
             L+  R  +GIGEGV+  A  +++++ IPV ERSR++ FV+ G+ LGSV GL ++P +I+ 
Sbjct:   192 LIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIET 251

Query:   360 FGWPSVFYSFGSLGSIWFA--LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPW 417
             F W SVFY FG LG  WF    +L +   S K + E+    K           ++  IPW
Sbjct:   252 FNWESVFYLFGLLGVGWFVGFQFLNEEEVSYKGN-EISTSHKSENATKEELGSSLKEIPW 310

Query:   418 KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFA 477
             K       VWA+I +HFC +WG +  L+W+PTY+++ L  NLTE+    +LP L   V  
Sbjct:   311 KSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVT 370

Query:   478 NMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV 519
             ++    AD L++ G+  T VRKI Q+I F+ PA  +T LS V
Sbjct:   371 SLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMT-LSSV 411

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)]

 Score = 599 (215.9 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 117/282 (41%), Positives = 173/282 (61%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A K GGK +LGFG++  +V T+ TP+AA 
Sbjct:    99 KKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   159 LGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             I+     W  VFY FG++G  WF LW+     +P++   +   EK +IL  S+  +  S 
Sbjct:   219 IICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILS-SLRNQLSSQ 277

Query:   415 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
               +PW  IL   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+G    LP+L 
Sbjct:   278 KSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLG 337

Query:   473 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFL 513
               +   + G  AD L +K   S   VR+I   IG +GPA FL
Sbjct:   338 SWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFL 379

GO:0006865 "amino acid transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005351 "sugar:hydrogen symporter activity" evidence=TAS

GO:0005765 "lysosomal membrane" evidence=IDA;TAS

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 594 (214.2 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 117/283 (41%), Positives = 172/283 (60%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K+++W++ T G I  SFF+GY++TQI GG  A K GGK +LGFG+   SV T+LTP+AA 
Sbjct:    88 KKYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAAD 147

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+ +L+ +RA  G+GEGV  PAM++M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   148 LGVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSG 207

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             ++     W  VFY FG+LG +WF  W+      P+    +   E+ +IL  S  K+ +S 
Sbjct:   208 LICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYIL--SSLKDQLST 265

Query:   415 ---IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL 471
                +PW+ IL   P+WA++++HF +NW  + LLT +PTY  ++L+F+  E+G    LP+ 
Sbjct:   266 QKSVPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYF 325

Query:   472 TMAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFL 513
                +   + G IAD L  K   S   VRK    IG +GPA FL
Sbjct:   326 GCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFL 368

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 595 (214.5 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 119/302 (39%), Positives = 179/302 (59%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K + W++ T G I  SFF+GY++TQI GG  A K GGK +LGFG++  +V T+ TP+AA 
Sbjct:    99 KRYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
              G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   159 FGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             I+     W  VFY FG +G IWF LW+     +P+    +  +EK +IL  S+  +  S 
Sbjct:   219 IICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILS-SLKNQLSSQ 277

Query:   415 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
               +PW  +L   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+GL   LP+  
Sbjct:   278 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFG 337

Query:   473 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 530
               +   + G  AD L +K   S   VR++   IG +GPA FL     +    ++AV+ + 
Sbjct:   338 CWLCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLT 397

Query:   531 CS 532
              S
Sbjct:   398 IS 399

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)]

 Score = 579 (208.9 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
 Identities = 118/286 (41%), Positives = 171/286 (59%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A + GGK +LG G++  +V T+ TP+AA 
Sbjct:    99 KKYQWDAETQGWILGSFFYGYIVTQIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L   Y+G  LG+V  L +S 
Sbjct:   159 LGVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVS- 413
             I+     W  VFY FG +G +WF LW+     +P+    +   EK +I+  S+  +  S 
Sbjct:   219 IICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVS-SLKNQLSSQ 277

Query:   414 -VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP--- 469
              V+PW  IL   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+G    LP   
Sbjct:   278 KVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPYFG 337

Query:   470 -WLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFL 513
              WL M V     G  AD L V    S  +VR+I   IG +GPA FL
Sbjct:   338 CWLCMIVC----GQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFL 379

GO:0005764 "lysosome" evidence=IDA

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO;IDA

GO:0015739 "sialic acid transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA;ISO

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 579 (208.9 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
 Identities = 114/282 (40%), Positives = 170/282 (60%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A + GGK +LG G++  SV T+ TP+AA 
Sbjct:    99 KKYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
             +G+  L+++RA  G+GEGV  PAM+ M S W P  ERS+ L   Y+G  LG+V  L +S 
Sbjct:   159 LGVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVS- 413
             I+     W  VFY FG +G +WF LW+     +P+    +   EK +I+  S+  +  S 
Sbjct:   219 IICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVS-SLKNQLSSQ 277

Query:   414 -VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
              V+PW  IL   P+WA++++HF +NW  + LLT +PTY  ++L+FN+ E+G    LP+  
Sbjct:   278 KVVPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFG 337

Query:   473 MAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFL 513
               +   + G  AD L V    S  +VR+I   +G +GPA FL
Sbjct:   338 CWLCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFL 379

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 575 (207.5 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 114/282 (40%), Positives = 169/282 (59%)

Query:   235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 294
             K++ W++ T G I  SFF+GY++TQI GG  A + GGK +LGFGV+  +V T+ TP+AA 
Sbjct:    99 KKYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAAD 158

Query:   295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 354
              G   L+ +RA  G+GEGV  PAM+ M S W P  ERS+ L+  Y+G  LG+V  L +S 
Sbjct:   159 FGFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSG 218

Query:   355 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 414
             ++     W  VFY FG +G IWF LW+     +P+    +   EK +IL  S+  +  S 
Sbjct:   219 VICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILS-SLKNQLSSQ 277

Query:   415 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 472
               +PW  +L   P+WA++++HF +NW  + LLT +PTY  +VL+FN+ E+G    +P+L 
Sbjct:   278 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLG 337

Query:   473 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFL 513
               +   + G  AD L ++   S   VR++   IG +GPA FL
Sbjct:   338 CWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFL 379

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GX78	ANTR2_ARATH	No assigned EC number	0.7853	0.7490	0.7393	yes	no
Q652N5	PHT44_ORYSJ	No assigned EC number	0.7416	0.7752	0.7005	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	3e-59
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-48
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-46
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-43
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-23
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	8e-22
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-14
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	7e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-12
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	8e-12
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	2e-11
COG0477	338	COG0477, ProP, Permeases of the major facilitator	5e-11
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-10
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-09
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	9e-09
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-07
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	1e-07
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-07
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-06
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-06
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	7e-05
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	2e-04
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	2e-04
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	4e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	9e-04
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	0.002
TIGR00885	408	TIGR00885, fucP, L-fucose:H+ symporter permease	0.002
PRK10133	438	PRK10133, PRK10133, L-fucose transporter; Provisio	0.003
PRK12382	392	PRK12382, PRK12382, putative transporter; Provisio	0.004
PRK05122	399	PRK05122, PRK05122, major facilitator superfamily	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  203 bits (517), Expect = 3e-59
 Identities = 110/321 (34%), Positives = 160/321 (49%), Gaps = 11/321 (3%)

Query: 218 LCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF 277
           L  +   N    I      F W+    GLI SS F+G ++ QI  G  A K+  K  +G 
Sbjct: 54  LACLSAENELDNIKN--PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGI 111

Query: 278 GVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF 337
           G+   SV +++ P AA  G+  ++  R   G+ +G   PA + ++ KW P  ERSR L  
Sbjct: 112 GMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171

Query: 338 VYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA 396
             SG  LG+   L +S  L + + GWP +FY FG +G  W  LW       P   P +  
Sbjct: 172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISK 231

Query: 397 EEKRHILGGSISKEAVSV---IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ 453
            EK++I   S+  +  S    +P K I    PVWA+  + F H W   IL T++PT+ + 
Sbjct: 232 FEKKYI-NSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW 290

Query: 454 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LSITAVRKIMQSIGFLGP--- 509
           VL+ +  E+GL   LP+L   + +   G++AD L S   LS+TA RKI   IG LGP   
Sbjct: 291 VLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIF 350

Query: 510 AFFLTQLSHVRTPAMAVLCMA 530
           A+ L  LS      + +L +A
Sbjct: 351 AYALPYLSAAFYLTIIILTLA 371

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  170 bits (433), Expect = 2e-48
 Identities = 77/321 (23%), Positives = 141/321 (43%), Gaps = 19/321 (5%)

Query: 211 LCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG 270
           L  +AFL      +      L ++++   + T +GL+ ++F  GY L Q + G  +D+FG
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 271 GKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE 330
            + VL  G++ +++  +L   A+   L  LL++R   G+G G   PA   +++ W P  E
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118

Query: 331 RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE 390
           R R+L  + +G  LG+  G  +  +L   FGW + F     L  +   L        P E
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 391 DPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY 450
               +  E+              ++P   +L + PV  L+++     +  F LLT++P  
Sbjct: 179 SKRPKPAEEAP----------APLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL- 227

Query: 451 YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPA 510
           Y +VL  +   +GL   L  L  A+   + G ++D L  +       R ++  +  +  A
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR------RRLLLALLLLILAA 281

Query: 511 FFLTQLSHVRTPAMAVLCMAC 531
             L  LS   +    ++ +  
Sbjct: 282 LGLALLSLTESSLWLLVALLL 302

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  166 bits (423), Expect = 2e-46
 Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 12/324 (3%)

Query: 215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPV 274
             ++  +DR N+S A   + ++   ++   G + S+F WGY++ Q  GG   D+FG +  
Sbjct: 2   VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT 61

Query: 275 LGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS 334
           L   ++ W V T L   A       L I+R  +G  E    P +  +++ W P SER+ +
Sbjct: 62  LAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATA 119

Query: 335 LAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 394
           ++   S   LG + G  +   ++  F W   F   G LG IW  LWL K    P +  + 
Sbjct: 120 VSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPPQKAKW 178

Query: 395 RAEEKRHILGGSISKEAVSVIPW-------KLILSKAPVWALIISHFCHNWGTFILLTWM 447
             EE+++I+ G +  E     P        K +L    VW L +  F  N G    LTW 
Sbjct: 179 LTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238

Query: 448 PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL 507
           PTY  Q    ++ E+G    LP +   +   +GG ++D L+ +G S+    +    I  L
Sbjct: 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV-FARKTAIIAGL 297

Query: 508 GPAFFLTQLSHVRTPAMAVLCMAC 531
                L   ++      A L +  
Sbjct: 298 V-LSLLMFATNYVNIPYAALALVA 320

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  156 bits (397), Expect = 4e-43
 Identities = 81/323 (25%), Positives = 146/323 (45%), Gaps = 49/323 (15%)

Query: 209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK 268
           +LL F  F L  +DR  +S A+  ++++   +++  GLI S+F  GY L  ++ G  +D+
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 269 FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV 328
           FG + VL  G++ +++ ++L   A+   L  LL+ R  +G+G G   PA   ++++W P 
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 329 SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSP 388
            ER R+L    +G  LG++ G  +  +L +  GW  +F     LG +   L L       
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL------- 171

Query: 389 KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP 448
                                                +  L ++ F  ++G + LLT++P
Sbjct: 172 --------------------------------FLLRLLLLLALAFFLLSFGYYGLLTYLP 199

Query: 449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG 508
            Y  +VL  +  E+GL   L  L   + A +GG ++D L          R+++  IG L 
Sbjct: 200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--------RRLLLLIGLLL 251

Query: 509 PAFFLTQLSHVRTPAMAVLCMAC 531
            A  L  L+   + A+ ++ +  
Sbjct: 252 AALGLLLLALAPSLALLLVALLL 274

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  102 bits (257), Expect = 1e-23
 Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 25/305 (8%)

Query: 203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVG 262
             +W  ++L F   L+   D   M  A   +S E+  +   +G + S+   G     +  
Sbjct: 13  RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFF 72

Query: 263 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 322
           G  AD+ G + VL + ++ +SV T+L  +A    +  LLI+R   G+G G  MP +N ++
Sbjct: 73  GPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130

Query: 323 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK 382
           S++ P   R  ++  ++ G  +G+  G  ++  LI  FGW S+FY  G +  +   L L 
Sbjct: 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLLLLM 189

Query: 383 KAYSSP-----------------KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 425
           +                         P+++AE +   L    + +      +K +     
Sbjct: 190 RFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQGKT 248

Query: 426 VWA---LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 482
                 L + +F    G + L  W+P    + L F+L+ +     L      + + + GW
Sbjct: 249 ARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSIIFGW 307

Query: 483 IADTL 487
           +AD L
Sbjct: 308 LADRL 312

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 97.1 bits (242), Expect = 8e-22
 Identities = 60/288 (20%), Positives = 118/288 (40%), Gaps = 20/288 (6%)

Query: 213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK 272
           F  +    + R N ++A+  + +E   + T +GL+ SSF   Y +++ V G  +D+   +
Sbjct: 1   FIGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR 60

Query: 273 PVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERS 332
             L  G+I  ++  +         L  +  + A  GI +G+  P     ++KW   SER 
Sbjct: 61  VFLPIGLILCAIVNLF--FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG 118

Query: 333 RSLAFVYSGMYLGSVTGLAVSPILI----QKFGWPSVFYSFGSLGSIWFALWLKKAYSSP 388
             ++F      +G   G  + P+++    + + W  VF   G +  I   +       SP
Sbjct: 119 TWVSFWNCSHNVG---GGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175

Query: 389 K-----EDPELRAEEKRH---ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT 440
           +        E+  EE           ++K+ + +    ++L+K  +W + + +       
Sbjct: 176 QSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFL--QYVLLNKV-LWYISLGYVFVYVVR 232

Query: 441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 488
             +L W P Y  Q   F+  ++     L  L   V   + GW++D L 
Sbjct: 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR 304
           GL+ + +  G L+   + G+  D+FG KPVL  G+  + ++T +  +++ I +  L+I R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIAR 58

Query: 305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS 364
              G G   A+ A   +++   P  ER  +L  + +G+ LG + G  +  +L Q  GW +
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 365 VFYSFGSLGSIWFAL 379
            F     L    F L
Sbjct: 119 PFLFLAILALAAFIL 133

Length = 141

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 63/307 (20%), Positives = 120/307 (39%), Gaps = 38/307 (12%)

Query: 204 KRW-----VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLT 258
           KRW     + + + ++AF L    R N ++A+  + ++   + T +G++ S+F   Y ++
Sbjct: 24  KRWRIQIFLSIFIGYAAFYLT---RKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVS 80

Query: 259 QIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL-PFLLIMRAFM---GIGEGVA 314
           + V G+ +D+   +  + FG+I  ++  +L       G  P L +        G  +G+ 
Sbjct: 81  KFVMGVLSDRSNPRYFMAFGLILSAIVNIL------FGFSPSLFLFAVLWVLNGWFQGMG 134

Query: 315 MPAMNNMLSKWIPVSERSRSLAFV-----YSGMYLGSVTGLAVSPILIQKFGWPSVFYSF 369
            P     ++ W    ER    +         G     V  LA         GW + FY F
Sbjct: 135 WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFY-F 190

Query: 370 GSLGSIWFALWLKKAYS-SPKE----DPELRAEEKRHILGGSISKEAVSV--IPWKLILS 422
             + +I  AL L       P+       E    +   I       E ++   I  K +L 
Sbjct: 191 PGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLK 250

Query: 423 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM--G 480
              +W L +++       + +  W P Y ++V  F+L ++     +    +A        
Sbjct: 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW--AISLFEVAGLPGTLLA 308

Query: 481 GWIADTL 487
           GW++D L
Sbjct: 309 GWLSDKL 315

Length = 448

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 37/181 (20%), Positives = 78/181 (43%), Gaps = 5/181 (2%)

Query: 202 FPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIV 261
             +  +++ L F            ++   L + +    ++   GL+ S F  G +L  ++
Sbjct: 173 LLRLLLLLALAFFLLSFGYY--GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALL 230

Query: 262 GGIWADKFGGKP-VLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 320
           GG+ +D+ G +  +L  G++  ++  +L  +A  + L  + +    +G G G A PA+  
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL--LLLGFGLGFAFPALLT 288

Query: 321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
           + S+  P   R  +     +   LG   G  ++ +L+   G+  VF    +L  +   L 
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348

Query: 381 L 381
           L
Sbjct: 349 L 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 66.9 bits (164), Expect = 8e-12
 Identities = 56/251 (22%), Positives = 101/251 (40%), Gaps = 30/251 (11%)

Query: 207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWA 266
           + + LCF   LL  +D  +  +A   M++EF  +   +G   S+   G L   ++GG  A
Sbjct: 15  LTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA 74

Query: 267 DKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI 326
           D+ G K +L   V  + + ++ T  A     P LL+ R   G+G G A+P +  + S+ +
Sbjct: 75  DRIGRKRILIVSVALFGLFSLATAQAWD--FPSLLVARLLTGVGLGGALPNLIALTSEAV 132

Query: 327 PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI----WFALWLK 382
               R  +++ +Y G+  G      +  +      W  +FY  G +G +        WL 
Sbjct: 133 GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY-VGGVGPLLLVPLLMRWLP 191

Query: 383 KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLI-----LSKAPVWALIISHFCHN 437
                          E R     + + +  + +   L       +   +W   IS+F   
Sbjct: 192 ---------------ESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLW---ISYFFTL 233

Query: 438 WGTFILLTWMP 448
              + LL W+P
Sbjct: 234 IVLYFLLNWLP 244

Length = 406

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 27/338 (7%)

Query: 199 WEQFPKR--WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYL 256
           WE   KR     + L   AF +  M     S   + +  +F  +    GL+ +       
Sbjct: 4   WEARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGA 63

Query: 257 LTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLPFLLIMRAFMGIGEG--- 312
           L ++  G   D+FGG+      ++   +  +    A        LL++   +G+      
Sbjct: 64  LLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFA 123

Query: 313 VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL 372
           V MP      S + P  ++  +L    +G    +V  L V+P++   FG+ +     G  
Sbjct: 124 VGMP----NASFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIY 178

Query: 373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIIS 432
             +  A+    A+    + PE RA           S +       K + S    W L + 
Sbjct: 179 V-VALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLL 226

Query: 433 HFCHNWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG 491
           +F   +G F+  + ++P Y       +   +GL   L  L  A+   +GGW++D +   G
Sbjct: 227 YFA-TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GG 283

Query: 492 LSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM 529
             +T    +  ++     + FLT   H  +  + V   
Sbjct: 284 RRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVF 321

Length = 417

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 63.9 bits (154), Expect = 5e-11
 Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 18/337 (5%)

Query: 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT--VGLIQSSFFWGYLLTQIVGG 263
              +L    A LL  +D   +S A+  +    + +S     GL+ S+FF GY +  ++ G
Sbjct: 1   KRSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAG 60

Query: 264 IWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 323
              D++G + VL  G++ + + T+L  +A  +GL  LLI+R   G+G G  +P  + +LS
Sbjct: 61  PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120

Query: 324 KWIPVSERSRSLAFVYS--GMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFAL 379
           +W P +        + +     LG   G  ++ +L+     GW + F     LG +   L
Sbjct: 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLIL 180

Query: 380 WLK------------KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVW 427
            L                 +  E  +L       +LGG +       +       +A + 
Sbjct: 181 VLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLL 240

Query: 428 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL 487
            L ++      G  ILL  +P         +        +L  + + +   +G  +  +L
Sbjct: 241 GLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSL 300

Query: 488 VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM 524
           +   L  +   + +   G L  A  L  L       +
Sbjct: 301 LVDRLGRSLGLRAILLAGALLLAILLLVLLLALVLTI 337

Length = 338

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 26/262 (9%)

Query: 263 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG-EGVAMPAMNNM 321
           G+ ADKFG KP++ + ++ +SV T L+ +A+  G+  L + R  +G+G  G    A    
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131

Query: 322 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL 381
           +  W P   +S++ AF+ SG  +G++      P   + +GW + F  F  L  +   +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188

Query: 382 KKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP------VWALIISHFC 435
           +      KE  E +   K      S S  +V  +  K + ++A       V+ ++ S F 
Sbjct: 189 RARAPESKEWEEAKLSGKGK---HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245

Query: 436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLS 493
            NW  F LL   PTY    L     ++G+   L  +T A F  + G I   L +   GL 
Sbjct: 246 ANWPIFGLL---PTY----LAGEGFDTGVVSNL--MTAAAFGTVLGNIVWGLCADRIGLK 296

Query: 494 ITAVRKIMQSIGFLGPAFFLTQ 515
            T    ++ S  F+ P F + Q
Sbjct: 297 KTFSIGLLMSFLFIFPLFRIPQ 318

Length = 426

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 56/309 (18%), Positives = 119/309 (38%), Gaps = 29/309 (9%)

Query: 193 QETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSF 251
             T     +      ++ L  +AF +       + + +LP ++ +   +    G + +++
Sbjct: 1   MATPATARKPMW-LALLALALAAFAI-GTTEF-VPVGLLPPIAADLGVSEGAAGQLITAY 57

Query: 252 FWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE 311
             G  L   +  +   +   + +L   +  + V+ +L+ +A       LL+ RA  G+  
Sbjct: 58  ALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP--SFAVLLLARALAGLAH 115

Query: 312 GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS 371
           GV       + ++ +P  +R R+LA V++G+ L +V G+ +   L Q FGW + F +   
Sbjct: 116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAV 175

Query: 372 LGSI---WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWA 428
           L  +        L  +  S      LR                      +L+     +  
Sbjct: 176 LALLALLLLWKLLPPSEISGSLPGPLRTL-------------------LRLLRRPGVLLG 216

Query: 429 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 488
           L+ + F    G F L T++  +   V  F+++   L  +   +   +   +GG +AD   
Sbjct: 217 LLAT-FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGP 275

Query: 489 SKGLSITAV 497
            + L    +
Sbjct: 276 RRALIAALL 284

Length = 394

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 57.3 bits (138), Expect = 9e-09
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD 267
           +++  F  F+   +DR+N+  A L M K+   ++T  GL  + F+  Y++  I   I   
Sbjct: 9   LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA 68

Query: 268 KFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP 327
             G +  +   ++ W +A+  T  A   G   L ++R  +GI E   +P +   L+ W P
Sbjct: 69  IIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126

Query: 328 VSERSRSLAFVYSGMYLGSVTGLAVS 353
              R+R+ A     M +    GL +S
Sbjct: 127 AYFRARANALFMIAMPVTMALGLILS 152

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 66/316 (20%), Positives = 122/316 (38%), Gaps = 45/316 (14%)

Query: 241 STTVGLIQS--SFFWGYLLTQIVGGI----WADKFGGKPVLGFGVIWWSVATV---LTPV 291
              V L+ +  +F  G+L  + +G I    + D+ G K  L   ++   + T+   L P 
Sbjct: 29  DPLVALLATFATFAAGFLA-RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS 87

Query: 292 AARIGL--PFLL-IMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS----GMYL 344
            A IG+  P LL + R   G   G         L+++ P  +R    +F       G+ L
Sbjct: 88  YATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLL 147

Query: 345 GSVTGLAVSPIL----IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 400
            ++T L +S +L    + ++GW   F     L  I   L+L++   + +E P     +++
Sbjct: 148 AALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLI--GLYLRR---NLEETPVFEKAQEK 202

Query: 401 HILGGSISKEAVSVIPWKLILSK--APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN 458
           H              P    L+K   P    +          +++ T++PTY  Q L  +
Sbjct: 203 HKKKR---------GPIAETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS 253

Query: 459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH 518
              + L  +L  +   +   + G ++D +  + + I     I   +  L     L  L  
Sbjct: 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI-----IFTVLAALLAVPLLMALLD 308

Query: 519 VRTPAMA---VLCMAC 531
             +  +    VL MA 
Sbjct: 309 SGSFTLFFFLVLGMAL 324

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 197 PWWEQF-PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNS-TTVGLIQSSFFWG 254
           PW+      +W      +  +LL   D V +++ +  +  EF   +     LI ++F   
Sbjct: 9   PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISR 68

Query: 255 YLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG-EGV 313
           +    ++G +  D++G +  +   ++ +SV T+    A   G   L I R  +G+G  G 
Sbjct: 69  WFGGLLLGAM-GDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARLVIGMGMAGE 125

Query: 314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG 373
              +   ++  W P   R+++  F+ SG  +G+V    V  +++  +GW ++F  F  + 
Sbjct: 126 YGSSATYVIESW-PKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF--FIGIL 182

Query: 374 SIWFALWLKKA 384
            I FALWL+K 
Sbjct: 183 PIIFALWLRKN 193

Length = 496

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 41/214 (19%), Positives = 86/214 (40%), Gaps = 29/214 (13%)

Query: 204 KRWVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVG 262
           K + ++L C S      +D   M +   P ++ + +  ++ V +  + +  G+   Q++ 
Sbjct: 4   KAFALLLGCLSILGPLGID---MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLW 60

Query: 263 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 322
           G  +D++G +PVL  G+  ++++++   ++  I    LL++R     G          ++
Sbjct: 61  GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIET--LLVLRFVQAFGASAGSVISQALV 118

Query: 323 SKWIPVSERSRSLAFVYSGMYLGSVTGL--AVSPI----LIQKFGWPSVFYSFGSLGSIW 376
               P  E SR  +       L  V  L  AV+P+    ++    W ++F      G + 
Sbjct: 119 RDIYPGEELSRIYSI------LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172

Query: 377 FAL--WLKKAYSSPKEDPELRAEEKRHILGGSIS 408
            AL  ++          PE    E R  +     
Sbjct: 173 SALIFFIL---------PETLPYEARIQISTYFE 197

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 11/159 (6%)

Query: 196 SPWWEQFPKRWVVVLL--CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFW 253
            P W+   +  V+ LL                +   +    +    ++   GL+      
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFA----LLTYLPLYQEVLGLSALLAGLLLGLAGL 248

Query: 254 GYLLTQIVGGIWADKFGGKP---VLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG 310
              + +++ G  +D+ G +    +    +I  ++   L  +        + +    +G G
Sbjct: 249 LGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL--LLLGFG 306

Query: 311 EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG 349
            G+  PA+N ++S   P  ER  +     +   LG   G
Sbjct: 307 AGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 10/202 (4%)

Query: 240 NSTTVGLIQSSF-FWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGL 297
           + T    + S++    YL   I+GG  AD+  G +  +  G I  ++  ++  +++  G 
Sbjct: 59  DETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGP 117

Query: 298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV--YSGMYLGSVTGLAVSPI 355
             L I  A + +G G+  P ++++L +  P  +  R   F   Y G+ +GS+    ++ +
Sbjct: 118 GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL 177

Query: 356 LIQKFGWPSVF--YSFGSLGSIWFALWLKKAY---SSPKEDPELRAEEKRHILGGSISKE 410
           L   +GW   F   + G +  +   L  ++         +   L       +LGG +   
Sbjct: 178 LAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI 237

Query: 411 AVSVIPWKLILSKAPVWALIIS 432
             +++   L  +      L+IS
Sbjct: 238 LAALLTLLLNQNTFSGVLLVIS 259

Length = 498

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 21/70 (30%), Positives = 32/70 (45%)

Query: 245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR 304
           GLI S F  G L+  +  G   D+FG K  L  G + + +  +L   A       L++ R
Sbjct: 49  GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGR 108

Query: 305 AFMGIGEGVA 314
             +G+G G  
Sbjct: 109 VIVGLGVGGI 118

Length = 449

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV 291
           P+     W    + +  + F         + G + DK+G + V+ FG I   +  VL   
Sbjct: 28  PIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAY 87

Query: 292 AARIGLPFLLIMRAFMGIGEG-VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL 350
           A    LP L       GIG G V    + N L KW P     R LA   +    G+   L
Sbjct: 88  AD--SLPALYAAAVVAGIGAGAVYGTCVGNAL-KWFP---DKRGLAAGLTAAGFGAGAAL 141

Query: 351 AVSPI--LIQKFGWPSVFYSFG 370
            V PI  +I+  G+ + F  FG
Sbjct: 142 TVVPIAAMIKVSGYQAAFMYFG 163

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT 286
           ++AI  ++ +   + + V  + +S+     ++  + G  A +FG + +       +++ +
Sbjct: 22  NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81

Query: 287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS 346
           +L  VA  + L  ++I R   G G G  +P   + L    P  +R R++A     + +  
Sbjct: 82  LLCGVAPNLEL--MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP 139

Query: 347 VTGLAVSPILIQKFGWPSVFY 367
             G  +   +I+ + W  +F 
Sbjct: 140 ALGPTLGGWIIENYHWRWIFL 160

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 9/142 (6%)

Query: 232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV 291
           P+ + F    T V +  +    G  ++  VGG+ ADKFG + V   G I + +      +
Sbjct: 28  PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI 87

Query: 292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA 351
           A    L  L +       G G+A     N   KW P  +R  +   +  G  LGS     
Sbjct: 88  AD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGS---FI 141

Query: 352 VSPI---LIQKFGWPSVFYSFG 370
           +SP+   +I   G P+ F   G
Sbjct: 142 LSPLITSVINLEGVPAAFIYMG 163

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 22/150 (14%)

Query: 229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL 288
           A+  ++ +F  ++ +V +  S++  G+ + Q+  G  AD FG KPV+  G + +++A V 
Sbjct: 13  ALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 289 TPVAARIGLPFLLIMRAFMGI---GEGVAMPA-MNNMLSKWIPVSERSRSLAFVYSGMYL 344
             +A  I    L+ MR   G+      V + A M +M  K     E SR ++FV      
Sbjct: 73  CALAQTIDQ--LIYMRFLHGLAAAAASVVINALMRDMFPK----EEFSRMMSFVT----- 121

Query: 345 GSVTGLA--VSPI----LIQKFGWPSVFYS 368
             V  +A  ++PI    L+  F W ++F+ 
Sbjct: 122 -LVMTIAPLLAPIIGGWLLVWFSWHAIFWV 150

Length = 377

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGI 264
           +W      +  +LL   D   +++ +  ++ EF   +     + S+         ++ G+
Sbjct: 10  QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGL 69

Query: 265 WADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 324
           W D++G +  +   ++ +S  T+    A   G   + I R  +GIG G    +    + +
Sbjct: 70  WGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIE 127

Query: 325 WIPVSERSRSLAFVYSGMYLG----SVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 380
             P   R+++   + SG  +G    +     V P+     GW ++F  F S+  I FALW
Sbjct: 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW--GDGWRALF--FISILPIIFALW 183

Query: 381 LKK 383
           L+K
Sbjct: 184 LRK 186

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 53/297 (17%), Positives = 104/297 (35%), Gaps = 30/297 (10%)

Query: 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIW 265
           W    L FS +   +   V M    L +S     N   V ++  +        +I+ G  
Sbjct: 7   WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVL------RIILGFL 60

Query: 266 ADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF--LLIMRAFMGIGEGVAMPAMNNMLS 323
            DKFG +      ++  ++  +   +A      +  LL++R F+GI  G     M   +S
Sbjct: 61  VDKFGPRYTTTLSLLLLAIPCLWAGLA---VQSYSVLLLLRLFIGIAGGSFASCM-PWIS 116

Query: 324 KWIPVSERSRSLAFVYSGMYLG-SVTGLAVSPI-----------LIQKFGWPSVFYSFGS 371
            + P   +  +L        +G  V    + PI               +GW  V    G 
Sbjct: 117 FFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI 176

Query: 372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALII 431
           L      ++   A + P +    +        G   S    ++     +      W L +
Sbjct: 177 LLLPALLIFFVGADTPPGKPATGKLS----FKGARWSVGTGALGDQLKVFRDRHTWILAL 232

Query: 432 SHFCHNWGTFILLTWM-PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL 487
            +    +G+F+ ++ +   ++      +   +G +  L  L  ++   +GG I+D L
Sbjct: 233 LYSV-TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL 288

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|211614 TIGR00885, fucP, L-fucose:H+ symporter permease

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK 268
            L+  S F L        +  +    + F   +    L+QS+F+ GY +  I   I+  K
Sbjct: 6   ALIT-SLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK 64

Query: 269 FGGKPVLGFGVIWWSVATVLTPVAARIGL--PFLL---IMRAFMGIGEGVAMPAMNNMLS 323
              K  +  G+  +++   L   AA I     FL+   I+ A +G  E  A P +  M  
Sbjct: 65  LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG- 123

Query: 324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 358
              P S  +R L    S    GS+ G+ V+  LI 
Sbjct: 124 ---PESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 408

>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF 269
           LLC   FL    + +N  I +    + F   +   GLIQS+F++GY +  I  GI   K 
Sbjct: 30  LLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88

Query: 270 GGKPVLGFGVIWWSVATVLTPVAARIG-----LPFLLIMRAFMGIGEGVAMP 316
             K  +  G+  +++   L   AA I      L  L I+ A +G  E  A P
Sbjct: 89  SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP 140

Length = 438

>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 224 VNMSIAILPM--SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP--VLGF-- 277
           V + + ++P+    +  + +T VG+     F   +LT+   G  AD++G K   + G   
Sbjct: 31  VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLA 90

Query: 278 ----GVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE 311
               G+ +   A +      +  L  L++ R  +G GE
Sbjct: 91  CGLAGLAYLLAAILPVSAPFKFAL--LVVGRLILGFGE 126

Length = 392

>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query: 208 VVLLCFSAFLLCNMDRVNMSIAILP--MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIW 265
           +V+  F ++L      + + +A+LP  +  +  +++   GL+ S  +   LL++   G +
Sbjct: 20  IVMFTFISYL-----TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRY 74

Query: 266 ADKFGGKPVLGFGVIWWSVATVLTPVAARIG------LPFLLIMRAFMGIGEGVA 314
           AD  G K  + FG+   +++ +L  +A  +       L  LL+ R  +GIGE +A
Sbjct: 75  ADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129

Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.98
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.98
KOG2532	466	consensus Permease of the major facilitator superf	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK03699	394	putative transporter; Provisional	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK10642	490	proline/glycine betaine transporter; Provisional	99.95
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.95
PRK10504	471	putative transporter; Provisional	99.95
TIGR00900	365	2A0121 H+ Antiporter protein.	99.95
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PRK15075	434	citrate-proton symporter; Provisional	99.95
TIGR00895	398	2A0115 benzoate transport.	99.95
PRK10133	438	L-fucose transporter; Provisional	99.95
PRK11043	401	putative transporter; Provisional	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
PRK09952	438	shikimate transporter; Provisional	99.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
PRK03893	496	putative sialic acid transporter; Provisional	99.93
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.93
PRK03633	381	putative MFS family transporter protein; Provision	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.92
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
PRK12382	392	putative transporter; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.92
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.91
PRK10054	395	putative transporter; Provisional	99.91
TIGR00901	356	2A0125 AmpG-related permease.	99.91
PRK15011	393	sugar efflux transporter B; Provisional	99.91
PRK11010	491	ampG muropeptide transporter; Validated	99.9
PRK11902	402	ampG muropeptide transporter; Reviewed	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.88
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.88
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
PRK09528	420	lacY galactoside permease; Reviewed	99.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.86
KOG0254	513	consensus Predicted transporter (major facilitator	99.86
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.85
KOG0569	485	consensus Permease of the major facilitator superf	99.83
PTZ00207	591	hypothetical protein; Provisional	99.83
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.83
KOG2615	451	consensus Permease of the major facilitator superf	99.81
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.8
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.79
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.78
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.77
KOG2563	480	consensus Permease of the major facilitator superf	99.76
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.74
PRK09669	444	putative symporter YagG; Provisional	99.73
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.72
PF13347	428	MFS_2: MFS/sugar transport protein	99.71
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.71
PRK10429	473	melibiose:sodium symporter; Provisional	99.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.66
PRK09848	448	glucuronide transporter; Provisional	99.65
PRK11462	460	putative transporter; Provisional	99.65
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.64
KOG3626	735	consensus Organic anion transporter [Secondary met	99.63
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.63
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.62
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.61
COG2211	467	MelB Na+/melibiose symporter and related transport	99.59
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.58
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.57
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.54
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.53
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.52
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.52
PRK05122	399	major facilitator superfamily transporter; Provisi	99.51
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.5
PRK10642	490	proline/glycine betaine transporter; Provisional	99.49
PRK15011	393	sugar efflux transporter B; Provisional	99.48
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.48
PRK09528	420	lacY galactoside permease; Reviewed	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.47
PRK12382	392	putative transporter; Provisional	99.47
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.45
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.43
PRK03545	390	putative arabinose transporter; Provisional	99.42
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.42
PRK10489	417	enterobactin exporter EntS; Provisional	99.41
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.41
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.4
PRK03633	381	putative MFS family transporter protein; Provision	99.39
PRK03699	394	putative transporter; Provisional	99.38
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PRK11663	434	regulatory protein UhpC; Provisional	99.36
PRK09705	393	cynX putative cyanate transporter; Provisional	99.35
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.33
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.32
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.32
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.32
PRK12307	426	putative sialic acid transporter; Provisional	99.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.31
PRK09952	438	shikimate transporter; Provisional	99.3
PRK11010	491	ampG muropeptide transporter; Validated	99.29
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.28
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.23
TIGR00900	365	2A0121 H+ Antiporter protein.	99.23
TIGR00895	398	2A0115 benzoate transport.	99.23
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.21
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.21
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.2
PRK10504	471	putative transporter; Provisional	99.2
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.18
PRK10054	395	putative transporter; Provisional	99.18
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.17
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.16
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.15
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.13
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.13
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.13
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.11
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.11
TIGR00898	505	2A0119 cation transport protein.	99.1
PRK11902	402	ampG muropeptide transporter; Reviewed	99.09
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.07
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.07
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.06
PLN00028	476	nitrate transmembrane transporter; Provisional	99.05
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.05
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.04
KOG0569	485	consensus Permease of the major facilitator superf	99.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.03
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.0
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.98
PRK09848	448	glucuronide transporter; Provisional	98.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.97
PRK10133	438	L-fucose transporter; Provisional	98.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.94
PRK10429	473	melibiose:sodium symporter; Provisional	98.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.92
KOG3762	618	consensus Predicted transporter [General function	98.9
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.89
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.87
TIGR00901	356	2A0125 AmpG-related permease.	98.86
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
COG0477	338	ProP Permeases of the major facilitator superfamil	98.85
PRK09669	444	putative symporter YagG; Provisional	98.84
PRK11043	401	putative transporter; Provisional	98.83
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.79
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.79
KOG0637	498	consensus Sucrose transporter and related proteins	98.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.72
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.67
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.64
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.63
PRK11462	460	putative transporter; Provisional	98.59
COG2211	467	MelB Na+/melibiose symporter and related transport	98.56
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.55
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.52
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.49
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.49
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.45
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.45
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.44
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.43
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.41
KOG2532	466	consensus Permease of the major facilitator superf	98.38
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.3
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.27
KOG0254	513	consensus Predicted transporter (major facilitator	98.24
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.22
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.21
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.19
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.15
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.11
COG3202	509	ATP/ADP translocase [Energy production and convers	98.05
PF12832	77	MFS_1_like: MFS_1 like family	98.05
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.89
KOG2615	451	consensus Permease of the major facilitator superf	97.89
PF12832	77	MFS_1_like: MFS_1 like family	97.87
KOG3810	433	consensus Micronutrient transporters (folate trans	97.83
KOG2533	495	consensus Permease of the major facilitator superf	97.81
KOG3097	390	consensus Predicted membrane protein [Function unk	97.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.73
PTZ00207	591	hypothetical protein; Provisional	97.7
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.61
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.47
PRK03612	521	spermidine synthase; Provisional	97.44
KOG3762	618	consensus Predicted transporter [General function	97.43
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.94
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.75
KOG2563	480	consensus Permease of the major facilitator superf	96.66
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.55
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.46
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.45
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.43
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.25
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.18
TIGR00805	633	oat sodium-independent organic anion transporter.	96.17
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.15
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.09
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.76
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.36
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.13
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	94.96
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	94.23
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	93.75
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.49
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	92.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	92.09
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.01
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.32
COG4262	508	Predicted spermidine synthase with an N-terminal m	90.71
KOG3880	409	consensus Predicted small molecule transporter inv	88.58
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	87.38
KOG0637	498	consensus Sucrose transporter and related proteins	85.51
KOG3810	433	consensus Micronutrient transporters (folate trans	83.24
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	82.44
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	82.12
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	81.78
KOG2881	294	consensus Predicted membrane protein [Function unk	81.07

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-31  Score=262.92  Aligned_cols=287  Identities=20%  Similarity=0.299  Sum_probs=254.8

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +.||.+++..++.+...++.+..++.+.|.+.++.++|.+++|++.+.+.+.+.++-.+.|.++||.+.|..+.+|+++.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils  104 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence            44567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHH--HHhhccc
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS--PILIQKF  360 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~--~~l~~~~  360 (534)
                      ++..+++++++  +.+.+.++-++.|...|..+|++...+++|++++|||+..++++..-++|+.+.|++.  +++..+.
T Consensus       105 ai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         105 AIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999  8899999999999999999999999999999999999999999999999999999999  8999889


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCC--Cccc----cccccccHHHhhcchhHHHHHHHHH
Q 009469          361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGG--SISK----EAVSVIPWKLILSKAPVWALIISHF  434 (534)
Q Consensus       361 gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~ll~~~~~~~~~l~~~  434 (534)
                      +||..|++.+++++++.++.++..+++|+...-.+.++......+  .++.    -.....-++.+++||.+|.++++.+
T Consensus       183 ~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~v  262 (448)
T COG2271         183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANV  262 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence            999999999999999999999999988875433332222211111  1111    1112345677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Q 009469          435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL--VSKG  491 (534)
Q Consensus       435 ~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~--g~r~  491 (534)
                      +.+..-+++..|.|.|+.|..|++...+....+.+=.+++.|.++.||++||+  |||.
T Consensus       263 fvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~  321 (448)
T COG2271         263 FVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG  321 (448)
T ss_pred             HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999998  4555

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.98  E-value=4.8e-30  Score=280.98  Aligned_cols=183  Identities=16%  Similarity=0.261  Sum_probs=160.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +..|.++++++++.+..+++...++.++|.+.++++++..+.+++.+++.++.+++.+++|+++||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45677888888888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc--
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--  360 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~--  360 (534)
                      +++.+++++++  +++.++++|++.|++.++..+...++++|++|+++|++.++++.++..+|.++++.++..+...+  
T Consensus       243 ~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       243 GFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999888  78999999999999999999999999999999999999999999999999999999887776533  


Q ss_pred             -----------CchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 009469          361 -----------GWPSVFYSFGSLGSIWFALWLKKAYSSP  388 (534)
Q Consensus       361 -----------gw~~~f~i~~~~~~i~~i~~~~~~~~~~  388 (534)
                                 +||+.+++.++..++.+ +..++.|+.|
T Consensus       321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESP  358 (742)
T TIGR01299       321 SFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESP  358 (742)
T ss_pred             hhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCH
Confidence                       58888877666554443 4444455554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.98  E-value=4.5e-30  Score=257.67  Aligned_cols=267  Identities=19%  Similarity=0.303  Sum_probs=243.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      .|..++.+.+..|............+|++.+++|+|....|++.++|.++..++.|+...+.||+.||++++..+.++.+
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            36777888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchH
Q 009469          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~  364 (534)
                      +.+++++++  |++.++++|++.|+..|.+++...++..++.|+++|++++++...+..++.++|.+++.++.+.+|||+
T Consensus        91 ~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~  168 (394)
T COG2814          91 SNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA  168 (394)
T ss_pred             HHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-CCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAY-SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      +|++.+.+.++.++..+...| +..++.+....                  .+..+++++|.++...+..++...+.+..
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~------------------~~~~~~l~~p~v~~~l~~t~l~~~g~F~~  230 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLPPSEISGSLPGPL------------------RTLLRLLRRPGVLLGLLATFLFMTGHFAL  230 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccCCCCCCcch------------------hHHHHHhcCchHHHHHHHHHHHHcchhhh
Confidence            999999999999888888877 11111111111                  12334789999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      ++|+..++++..|++....++++..+++++++|.+++|++.|| +.++.
T Consensus       231 ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~  278 (394)
T COG2814         231 YTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA  278 (394)
T ss_pred             HHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH
Confidence            9999999999999999999999999999999999999999999 66653

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.8e-29  Score=262.06  Aligned_cols=286  Identities=43%  Similarity=0.821  Sum_probs=263.0

Q ss_pred             hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccch
Q 009469          235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVA  314 (534)
Q Consensus       235 ~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~  314 (534)
                      .+++++..+.+++.+.+.+|+.+++++.|+++||+|.|+++.++.++.+++.+++..+...+++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            36888999999999999999999999999999999999999999999999999999987667778899999999999999


Q ss_pred             hhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 009469          315 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE  393 (534)
Q Consensus       315 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~  393 (534)
                      +++...+.++|.|++||++..++..++..+|.+++-+++|++.+. +||+++|++.+++.++..++++.+..+.|.+.+.
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            999999999999999999999999999999999999999999998 9999999999999999999999999988888776


Q ss_pred             hhHHHHhhhhCCCcccccc--ccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHH
Q 009469          394 LRAEEKRHILGGSISKEAV--SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL  471 (534)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~  471 (534)
                      ...+|.+.+..+..+.+..  ...||+.+++++++|.+.+..++..++.+.+..|+|.|+++.+|++..+.|++.+++.+
T Consensus       226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l  305 (466)
T KOG2532|consen  226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL  305 (466)
T ss_pred             CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence            6666666555444433333  47899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          472 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR  520 (534)
Q Consensus       472 ~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~  520 (534)
                      ...+..+++|.++||+.+|.+..+..++++-.++..+.++.+..+++.+
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            9999999999999999887677788888999999999999998887766

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=4.5e-29  Score=260.74  Aligned_cols=286  Identities=20%  Similarity=0.287  Sum_probs=236.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      .+|..++.+++.+++.+++....+.+.|.+.+++|++..++|++.+++.+++.+++++.|+++||+|||+++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            46888888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 009469          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-----  358 (534)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-----  358 (534)
                      ++.+++++++  +++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|.++++++++++.+     
T Consensus        85 ~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        85 IASTATMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999988  889999999999999999999999999999999999999999999999999999999998864     


Q ss_pred             -ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCCh---hhhHHHHhhhh--CC-C---cc----ccc-cccccHHHhhcc
Q 009469          359 -KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP---ELRAEEKRHIL--GG-S---IS----KEA-VSVIPWKLILSK  423 (534)
Q Consensus       359 -~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~---~~~~~~~~~~~--~~-~---~~----~~~-~~~~~~~~ll~~  423 (534)
                       ..|||++|++.+++.++..++.+++.++.|+..+   +.+.+...+..  .. .   .+    ... .....++.++ +
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence             3699999999888887766666666666654321   11111100000  00 0   00    000 0012344444 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          424 APVWALIISHFCHNWGTFILLTWMPTYYNQV-LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~-~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      +.+|...+..++....++.+.+|+|.|+++. .|++..+++.+.....++.++++++.|+++||+++|+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            7788888888888888999999999999873 36788889999999999999999999999999997764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=1.1e-28  Score=255.93  Aligned_cols=267  Identities=16%  Similarity=0.221  Sum_probs=222.8

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      ++|..+..+.+..+..........+++|.+.+++|.+..++|++.+.+.+++.++++++|++.||+|||+++..+.++++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34655555455445544444455667899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      ++.+++++++  +++.+++.|+++|++.+...+...+++.+++|+++|++++|++..+..+|.+++|++++.+.+.+|||
T Consensus        86 ~~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~  163 (390)
T PRK03545         86 ASHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHH
Confidence            9999999988  89999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      ++|++.+++.++..++.+...++.+++++.                   ...+.+++++++.++...+..++.....+..
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPSEHSG-------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTA  224 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            999999888777665555544433221110                   0113456788888887766666666666667


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      ..+++.|+++..|++..+++.+.....++.++++++.|++.||+++|.
T Consensus       225 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  272 (390)
T PRK03545        225 YSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF  272 (390)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Confidence            788888888878999999999999999999999999999999998774

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=1.4e-28  Score=261.42  Aligned_cols=292  Identities=32%  Similarity=0.539  Sum_probs=244.5

Q ss_pred             cCCchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHh----------------------hhCCCcchhHHHHHHHHHHHHHH
Q 009469          201 QFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSK----------------------EFNWNSTTVGLIQSSFFWGYLLT  258 (534)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~g~i~s~~~l~~~~~  258 (534)
                      ..+.+|.++.++++...+.+.+...++.+.+.+.+                      +++++..+.|++.+.+.+++.++
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~   92 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII   92 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence            34567888888888888889999999988887766                      78999999999999999999999


Q ss_pred             HHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHH
Q 009469          259 QIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV  338 (534)
Q Consensus       259 ~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~  338 (534)
                      +++.|+++||+|+|+++.++.++++++.+++.++...+++.+++.|+++|++.+...+....++++++|+++|++++++.
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999888876553225778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCC--Cccccccccc
Q 009469          339 YSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGG--SISKEAVSVI  415 (534)
Q Consensus       339 ~~~~~lG~~igp~i~~~l~~~-~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  415 (534)
                      ..+..+|.+++|++++.+.+. .|||+.|++.+++.++..++++...++.|+..+...+++.+...+.  ....+.....
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL  252 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence            999999999999999999988 4999999999988877777776666655543322222221111111  0111111234


Q ss_pred             cHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          416 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       416 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      +++++++++.+|...+..++..++.+.+.+|+|.|+++.+|++..+++++.++..++.+++.++.|+++||+++|+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~  329 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKT  329 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            68899999999999999999999999999999999999899999999999999999999999999999999876653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=1.7e-28  Score=262.50  Aligned_cols=287  Identities=15%  Similarity=0.188  Sum_probs=239.1

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      ++|..++.+++..++...+.++++.++|.+.+++|.+..+++|+.+.+.++..++.+++|+++||+|||++++++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            45788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhc-cCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ++.+++++++  +++.++++|+++|+|.+...+.....+.+++ |+++|++++|++.....+|.++||.+++++.+++||
T Consensus        83 ~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         83 LASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            9999999998  8999999999999999998888888887776 678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChh-hhHHHH--------------hhhhCCC---------------------
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPE-LRAEEK--------------RHILGGS---------------------  406 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~---------------------  406 (534)
                      ||.|++...+.++..++.++..++.+++..+ .+....              .......                     
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999998877777666666655554322111 110000              0000000                     


Q ss_pred             --ccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009469          407 --ISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIA  484 (534)
Q Consensus       407 --~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~  484 (534)
                        +.....+..+ ..+++++.++...+..++.....++...++|.|++..+|+++.+++++.....++..++.++.|++.
T Consensus       241 ~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~  319 (495)
T PRK14995        241 RTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILV  319 (495)
T ss_pred             HHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0001111222 3478888888888888888888888888999999999999999999999999999999999999999


Q ss_pred             HHhhcccch
Q 009469          485 DTLVSKGLS  493 (534)
Q Consensus       485 dr~g~r~~~  493 (534)
                      ||+|+|+..
T Consensus       320 ~r~g~~~~~  328 (495)
T PRK14995        320 SRLGLRLVA  328 (495)
T ss_pred             HHcCchHHH
Confidence            999988643

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=2.3e-29  Score=267.41  Aligned_cols=288  Identities=19%  Similarity=0.207  Sum_probs=232.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      .|..+.++++.++..+.+...+++..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|+|+++.++.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            45667777888888888999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHhh-----hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          285 ATVLTPV-----AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (534)
Q Consensus       285 ~~~l~~~-----~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~  359 (534)
                      +.+++++     ++  +++.+++.|++.|++.+...+...+++++|+|+++||+++|++..+..+|.++++++..++...
T Consensus       107 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        107 CMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            7766655     34  7899999999999999999999999999999999999999999999999999999998877665


Q ss_pred             c---CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhh-h---hCCCcccccccccc--HHHhhcchhHHHHH
Q 009469          360 F---GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH-I---LGGSISKEAVSVIP--WKLILSKAPVWALI  430 (534)
Q Consensus       360 ~---gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~--~~~ll~~~~~~~~~  430 (534)
                      .   +|+..|.+.+++.++..++.++..++.+++......++... .   .....+.++.....  .+..++++.+|...
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  264 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC  264 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHH
Confidence            3   69998888888877776666665555443221111111000 0   00000000111011  23368899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          431 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       431 l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +..++.....++..+|+|.|+++.+|++..+++++.....++.+++.+++|+++||+++|+...
T Consensus       265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~  328 (467)
T PRK09556        265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV  328 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            9999888888888999999999889999999999999999999999999999999999987543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=2.8e-27  Score=251.73  Aligned_cols=279  Identities=14%  Similarity=0.160  Sum_probs=219.3

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +++++.+...+...++.......+.+..|.+.+++|++..+++++.+++.+++.++.++.|+++||+|||+++.++.+++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~  111 (476)
T PLN00028         32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLT  111 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34455666666666777777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ----  358 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~----  358 (534)
                      +++.+++++++  +++.+++.|++.|++.+.. .....++++++|+++||+++|+......+|..+++.+.+.+..    
T Consensus       112 ~~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        112 APAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999888887  7888999999999988764 4456789999999999999999987777777777666655432    


Q ss_pred             -----ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHH
Q 009469          359 -----KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISH  433 (534)
Q Consensus       359 -----~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~  433 (534)
                           ..|||+.|++.+++.++..++.+++.++.|+...  .+.++.    ... ++......+++.++++++|.+.+..
T Consensus       189 ~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~--~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  261 (476)
T PLN00028        189 AGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY--RELKKS----GTM-PKDSFSKVLRYGVTNYRTWILALTY  261 (476)
T ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch--hhHHhc----Ccc-ccccHHHHHHHHHcCchhHHHHHHH
Confidence                 2589999999998888777666655544332211  110000    000 0001112356677888988888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          434 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       434 ~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      ++.......+..++|.|+.+.+|++...++.+.++..++++++++++|+++||+++|+
T Consensus       262 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~  319 (476)
T PLN00028        262 GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF  319 (476)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence            7666666777888999998878999999999999999999999999999999998763

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=5.9e-28  Score=254.18  Aligned_cols=282  Identities=17%  Similarity=0.242  Sum_probs=226.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      ++..+...++..++.+++...++..+|.+.+++|++..++|++.+++.+++.+++++.|++.||+|||+++.++.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            34566666777777778888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchH
Q 009469          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~  364 (534)
                      +.+++++++  +++.+++.|++.|++.|..++...+++.+++|+++|++++++++.+..+|.+++|.+++++.+.+|||+
T Consensus       101 ~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~  178 (434)
T PRK11663        101 INILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY  178 (434)
T ss_pred             HHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            999999888  888999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCChhhh---HHHHhhhhCCCcccccccccc-H-HHhhcchhHHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELR---AEEKRHILGGSISKEAVSVIP-W-KLILSKAPVWALIISHFCHNWG  439 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~-~~ll~~~~~~~~~l~~~~~~~~  439 (534)
                      .|++.+++.++..++..+..+++++......   .++..............+... + ...++++.+|.+.+..++....
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVV  258 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHH
Confidence            9998887766655544444444332110000   000000000000000001111 1 2356788889888888877777


Q ss_pred             HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV  488 (534)
Q Consensus       440 ~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g  488 (534)
                      ...+.+|+|.|+.+.+|++..+++...+...+++++++++.|+++||+.
T Consensus       259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~  307 (434)
T PRK11663        259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF  307 (434)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence            8888889999998778999999999999999999999999999999993

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=6.9e-28  Score=248.44  Aligned_cols=273  Identities=30%  Similarity=0.547  Sum_probs=231.1

Q ss_pred             HHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCC
Q 009469          217 LLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG  296 (534)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~  296 (534)
                      ++..++...++...|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||+++.++.++.+++.+++++++  +
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~   81 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--A   81 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--C
Confidence            45567778888999999999999999999999999999999999999999999999999999999999999999988  8


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~  376 (534)
                      ++.+++.|++.|++.+...+....++.|++|+++|++++++......+|.+++|.+++.+.+..+|++.|++.+++.++.
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988887776


Q ss_pred             HHHHHHhhcCCCCCChhhhHHHHhhhhCC------CccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          377 FALWLKKAYSSPKEDPELRAEEKRHILGG------SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY  450 (534)
Q Consensus       377 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~  450 (534)
                      .++.+...++++++.+...++++......      ..+........+++.+++++++...+..++..........++|.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (399)
T TIGR00893       162 GVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTY  241 (399)
T ss_pred             HHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            66665555554432221111111110000      111112223456778899999999999999898999999999999


Q ss_pred             HHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          451 YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       451 ~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      +++.+|.+..+.+++.....++.+++.++.|++.||+++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99888999999999999999999999999999999999986

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=4.3e-27  Score=244.34  Aligned_cols=266  Identities=16%  Similarity=0.220  Sum_probs=217.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      |+.|..++.+.+..+..........+.+|.+.+++|+++.++++..+++.++..+++++.|++.||+|||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            33566666665555555555556667789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      +++.+++++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+.+||
T Consensus        96 ~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw  173 (394)
T PRK10213         96 TLSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW  173 (394)
T ss_pred             HHHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            99999998887  8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~  442 (534)
                      |+.|++.+++.++..++.....|+.+++++.                   .....+..+++|.++...+..++...+.+.
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  234 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH-------------------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFA  234 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCccccc-------------------chhHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999998876665544443333332211100                   001234578888888877776666666666


Q ss_pred             HHHHH-HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          443 LLTWM-PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK  490 (534)
Q Consensus       443 ~~~~l-p~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r  490 (534)
                      ..+++ |.|. +.+|++....+++.....++.+++.++.+++.||.+++
T Consensus       235 ~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~  282 (394)
T PRK10213        235 FFTYIRPVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL  282 (394)
T ss_pred             HHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            67776 5555 45799999999999999999999999999999995433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=6.8e-27  Score=241.47  Aligned_cols=272  Identities=15%  Similarity=0.228  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT  286 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~  286 (534)
                      +.+..+.+..+........+.+..|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||+++.++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   84 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS   84 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            33344444455566777788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHH
Q 009469          287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVF  366 (534)
Q Consensus       287 ~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f  366 (534)
                      +++++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.|
T Consensus        85 ~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  162 (385)
T TIGR00710        85 LGLALSN--NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIF  162 (385)
T ss_pred             HHHHHHc--cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            9998887  88899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 009469          367 YSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTW  446 (534)
Q Consensus       367 ~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~  446 (534)
                      ++.+++.++..++.+...++.++++++.+..+              ....++.++++++++...+...+.....+....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPETLPYEARIQIST--------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSG  228 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCcccCCHHH--------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHc
Confidence            98888777766665555554433221111100              1124566788898888887777777777778888


Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          447 MPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       447 lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .|.++++.+|+++.+.+.+.....++.+++.++.|++.||+++|+...
T Consensus       229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            899998888999999999999999999999999999999999887544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.96  E-value=1.8e-26  Score=242.77  Aligned_cols=272  Identities=15%  Similarity=0.164  Sum_probs=210.6

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhC---CCcchhHH---HHHHHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN---WNSTTVGL---IQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~---i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      +++..+..+++..++.+++...++...|.+.++++   .+..+.+.   +.++..++..++++++|+++||+|||+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            34566677777888999999999999999999985   45554444   4444555555999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCh--------HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Q 009469          278 GVIWWSVATVLTPVAARIGL--------PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG  349 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~~~~~--------~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~ig  349 (534)
                      +.++++++.+++++++  ++        ..++++|+++|++.|..++...++++|++|+++|+++.++...+..+|.+++
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         99 SVCMMCFGSLVIACLP--GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  44        3588999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHhh--------cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhh
Q 009469          350 LAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL  421 (534)
Q Consensus       350 p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  421 (534)
                      +++...+.        ..+|||++|++.+++.++... .....++.++   . +. +..           .+..++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~---~-~~-~~~-----------~~~~~~~~l~  239 (432)
T PRK10406        177 LLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQ---Q-ET-RAL-----------KEAGSLKGLW  239 (432)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCch---H-HH-hhh-----------cccccHHHHH
Confidence            87765543        257999999987766554322 2122222211   0 00 000           0112467788


Q ss_pred             cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          422 SKAPVWALIISHFCH-NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       422 ~~~~~~~~~l~~~~~-~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ++++.+...+..++. ...++.+.+|+|.|+++.+|++..+.+.+..+..++.+++.++.|+++||++||+..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~  313 (432)
T PRK10406        240 RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSML  313 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            888887776665543 6677888899999998878999988888888888888899999999999999997543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=9.8e-27  Score=242.61  Aligned_cols=277  Identities=21%  Similarity=0.317  Sum_probs=226.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHH
Q 009469          202 FPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW  281 (534)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~  281 (534)
                      .+++|..+.++++..++.+++....+...|.+.+++|.++.+++++.+++.++..++.++.|+++||+|||+++.++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          282 WSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       282 ~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      ..++.+++++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        90 ~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         90 FGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            999888888887  889999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhc---chhHHHHHHHHHHHHH
Q 009469          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILS---KAPVWALIISHFCHNW  438 (534)
Q Consensus       362 w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~~l~~~~~~~  438 (534)
                      |++.|++.+++.++..++.....++.++..+.....+.         .    ....+..++   .+..+.+.+..++...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ---------R----APVLRALFGEGRATATLLLWISYFFTLI  234 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh---------h----hhhHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            99999988876666555555555544322111000000         0    001111222   2233444444555555


Q ss_pred             HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+....|+|.|+++ .|++..+.+.+.....++.++++++.|++.||+++++...
T Consensus       235 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (406)
T PRK11551        235 VLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVL  289 (406)
T ss_pred             HHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            667778889999987 6999999999999999999999999999999999887543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=1e-26  Score=238.72  Aligned_cols=251  Identities=14%  Similarity=0.096  Sum_probs=200.3

Q ss_pred             HHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChH
Q 009469          219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (534)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~  298 (534)
                      +......+++.+|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....+  +++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~   80 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYE   80 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHH
Confidence            345566788999999999999999999999999999999999999999999999877655555544433223324  799


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 009469          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i  378 (534)
                      .+++.|+++|++.+. ..+....+++++|+++|++++++...+..+|.++++++++++.+.+|||+.|++.+++.++..+
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence            999999999999986 4566677799999999999999999999999999999999999999999999998888887777


Q ss_pred             HHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 009469          379 LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN  458 (534)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s  458 (534)
                      +++...|+.++..++....+             ....++++++++|.+|.+.+..++....++.+.+|+|.|+++ .|++
T Consensus       160 ~~~~~lp~~p~~~~~~~~~~-------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s  225 (368)
T TIGR00903       160 LVLAALPALPFQAAEGFGFK-------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLE  225 (368)
T ss_pred             HHHHHcCCCCCCCCCCcchH-------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
Confidence            77777676554321100000             001246788999999999999999999999999999999987 6888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSK  490 (534)
Q Consensus       459 ~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r  490 (534)
                      .. .+....+..+.++++   .++++||+.|+
T Consensus       226 ~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~  253 (368)
T TIGR00903       226 DI-AGDAVALAILAGLIG---VAVIPDRVARA  253 (368)
T ss_pred             hH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence            65 566666666655555   47788887654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=9.2e-27  Score=242.01  Aligned_cols=270  Identities=16%  Similarity=0.186  Sum_probs=223.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      +|+....+++..++.......++..+|.+.+++|++..+++++.+.+.+++.++.++.|++.||+|||+++.++.++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i   84 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46677777778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCch
Q 009469          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWP  363 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-~~gw~  363 (534)
                      +.+++++++  +++.+++.|++.|++.+...+...+++.+++|+++|++++++.+....+|+.++|.+.+.+.. ..|||
T Consensus        85 ~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~  162 (394)
T PRK03699         85 AVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY  162 (394)
T ss_pred             HHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            999999887  788899999999999998888899999999999999999999999999999999999888765 57999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      +.|++.+++.++..++.+..  +.|+.+++..+ +          .+.    ..+. ..++.++.+.+..++....++.+
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~-~----------~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~  224 (394)
T PRK03699        163 WVYACIGLVYVAIFILTLFS--EFPALGKHAPK-A----------DKP----VAKE-KWGIGVLFLAIAALLYILAQLTF  224 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhc--CCccccccCcc-c----------cCc----cccc-cCChHHHHHHHHHHHHHHHHHHH
Confidence            99998887776655544332  11111111000 0          000    0011 12456777777777777788888


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..|+|.|+++.+|++..+++.+.+...++.++++++.|+++||+++|+.+.
T Consensus       225 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        225 ISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT  275 (394)
T ss_pred             HHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence            999999998888999999999999999999999999999999999987544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=2.2e-26  Score=240.06  Aligned_cols=278  Identities=15%  Similarity=0.127  Sum_probs=232.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHH
Q 009469          202 FPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW  281 (534)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~  281 (534)
                      .++.|...+.+.+..++..+....+.+.+|.+.+++|.+..+.++..+.+.+++.++.++.|+++||+|||+++.++.++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   87 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF   87 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            35567777777788888888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          282 WSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       282 ~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      .+++.+++.+++  +++.+++.|++.|++.+...+...+.+.|++|+++|++++++......+|..+||.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         88 FILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999888887  888999999999999998888899999999999999999999998888999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHH
Q 009469          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTF  441 (534)
Q Consensus       362 w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~  441 (534)
                      ||+.|++.+++.++..+..+...++++.+.++....             .....+++.++++|.++...+..++......
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-------------KELGRDYKLVLKNRRFVAGALALGLVSLPLL  232 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            999999988887776665554444433221110000             0011345678899999988888777776666


Q ss_pred             HHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          442 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       442 ~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ...++.|.++.+.+|+++.+.++......++.+++.++.+++.||+++|+...
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~  285 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIR  285 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            77778899988888999999998888888889999999999999999887544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.96  E-value=6.1e-27  Score=249.79  Aligned_cols=283  Identities=16%  Similarity=0.234  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~  287 (534)
                      .+..+++..++..++.....+.+|.+.+++|.+..+++|+.+.+.++..++.++.|+++||+|||++++++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45566677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHH
Q 009469          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (534)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~  367 (534)
                      ++++++  +++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.++.|||+.|+
T Consensus        83 ~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhh
Confidence            999988  899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChhh-hHHHH------------hhhhCCCc--------------------------c
Q 009469          368 SFGSLGSIWFALWLKKAYSSPKEDPEL-RAEEK------------RHILGGSI--------------------------S  408 (534)
Q Consensus       368 i~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~--------------------------~  408 (534)
                      +.+.+.++..++.+...+++++...+. +....            ........                          .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL  240 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            988777766665555544432221111 10000            00000000                          0


Q ss_pred             ccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          409 KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV  488 (534)
Q Consensus       409 ~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g  488 (534)
                      ..+.+..+ ..+++++.++...+..++..+..+...+++|.|+++.+|+++.+++++.....++.+++.++.|++.||++
T Consensus       241 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~  319 (485)
T TIGR00711       241 TDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKID  319 (485)
T ss_pred             cCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            00111112 24678888888888888888888888999999999989999999999999999999999999999999999


Q ss_pred             cccch
Q 009469          489 SKGLS  493 (534)
Q Consensus       489 ~r~~~  493 (534)
                      +|+..
T Consensus       320 ~~~~~  324 (485)
T TIGR00711       320 PRKLV  324 (485)
T ss_pred             cHHHH
Confidence            98753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=2.2e-26  Score=239.04  Aligned_cols=289  Identities=16%  Similarity=0.241  Sum_probs=220.1

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +++|+.+..+++..+...++....++..|.+.+++|++..+++++.+++.++..++.++.|+++||+|||+++.++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   87 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF   87 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-  361 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-  361 (534)
                      +++.+++++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ 
T Consensus        88 ~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        88 SAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999998888  899999999999999999999999999999999999999999999999999999999999988776 


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHH-hh----hhCCCccccc---cccccHHHhh-cch-hHHHHH
Q 009469          362 -WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK-RH----ILGGSISKEA---VSVIPWKLIL-SKA-PVWALI  430 (534)
Q Consensus       362 -w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~---~~~~~~~~ll-~~~-~~~~~~  430 (534)
                       ||+.|++.++..++.. +.....+++++..+..+.++. ..    ........+.   ......+... +.+ .+..+.
T Consensus       166 ~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (405)
T TIGR00891       166 GWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLV  244 (405)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHH
Confidence             9999987655444433 223333332211111100000 00    0000000000   0000001000 111 122233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          431 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       431 l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +...+..........++|.|+.+.+|++..+.+.+.....++.++++++.|++.||+++|+...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~  308 (405)
T TIGR00891       245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV  308 (405)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhH
Confidence            3333444445566678899998888999999999999999999999999999999999998654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=1.8e-26  Score=238.78  Aligned_cols=265  Identities=16%  Similarity=0.214  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      +.......+..........+.+|.+.+++|++..++|++.+.+.++..++++++|+++||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            33444556666777778888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 009469          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (534)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i  368 (534)
                      +++++  +++.+++.|++.|++.+...+....++.+++|+++|+++++++..+..+|..++|++++++.+..|||++|++
T Consensus        85 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence            99988  8999999999999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      .+++.++..+..+...|+.+++.+. ...                 ..+ +.++++..|...+..++...+.+...++++
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRDEAKG-GLR-----------------EQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIK  223 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccc-CHH-----------------HHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887776665555444443221110 000                 012 246677777766666665556666667778


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .++.+.+|+++.+.+++.....++.++++++.+++.||+++++...
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAA  269 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHH
Confidence            8888778999999999999999999999999999999999887544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=2e-26  Score=239.45  Aligned_cols=266  Identities=13%  Similarity=0.180  Sum_probs=216.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      .|......+...+.... ....++++|.+.+++|+|..+++++.+++.+++.+++++.|+++||+|||+++..+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~   86 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV   86 (393)
T ss_pred             HHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence            35544444444333322 26678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-Cch
Q 009469          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWP  363 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~-gw~  363 (534)
                      +.+++++++  +++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||
T Consensus        87 ~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~  163 (393)
T PRK09705         87 GALMRELYP--QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY  163 (393)
T ss_pred             HHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            999999999  88899999999999999999999999999996 88999999999999999999999999998875 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      +.+.+.++..++.....+...++.+++++..              +     ...++.+++++.|.+.+..++...+++..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  224 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREVASSHKT--------------T-----TTPVRVVFTPRAWTLGVYFGLINGGYASL  224 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccCC--------------C-----cCCcccccCHhHHHHHHHHHHHHHHHHHH
Confidence            9887766655444333333222222111000              0     01123456778888888777778888889


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .+|+|.|+++ +|++..+++.+..+..++.++++++.+++.||+++|+..+
T Consensus       225 ~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~  274 (393)
T PRK09705        225 IAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLM  274 (393)
T ss_pred             HHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence            9999999988 7999999999999999999999999999999999887544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=2.5e-27  Score=241.23  Aligned_cols=271  Identities=27%  Similarity=0.470  Sum_probs=220.2

Q ss_pred             HHHHHHHHhhhhHHHHhHH-HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh
Q 009469          213 FSAFLLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~  291 (534)
                      ++..++..+......+..| .+.+++|.+..+++++.+++.++..++.++.|+++||+|||+++.++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            3456667777788888888 889999999999999999999999999999999999999999999999999999666666


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHH
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~  371 (534)
                      ++  +.+.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+.++||+.|++.++
T Consensus        82 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 AS--NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hh--hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence            65  7779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCcccccccccc-HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP-WKLILSKAPVWALIISHFCHNWGTFILLTWMPTY  450 (534)
Q Consensus       372 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~  450 (534)
                      +.++..++.....++++++++...+.+..       ...+.+..+ ++.+++++.+|...+..++..+.......++|.|
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLY  232 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchh
Confidence            88888775444443333222211111100       000111122 5667778878766666666666778889999999


Q ss_pred             HHHhhCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          451 YNQVLKFN-LTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       451 ~~~~~g~s-~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      +.+.+|++ ..+.+.+..+..+.++++.++.|++.||+++++.
T Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR  275 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            77889999 8899999999999999999999999999998654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=7.4e-26  Score=234.97  Aligned_cols=267  Identities=13%  Similarity=0.126  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHh-hhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      ++.+.+..+..++.......+++..+.+.+ ++|++..+.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            567888888888888999999999998866 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc---cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----
Q 009469          285 ATVLTPVAA---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI----  357 (534)
Q Consensus       285 ~~~l~~~~~---~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~----  357 (534)
                      ..++++++.   ..+++.+++.|++.|++ +..+++....+++|+|+++||+++|+.....++|..+++++.+.+.    
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999988861   12799999999999998 6688999999999999999999999998777777776666665433    


Q ss_pred             -c-------------ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcc
Q 009469          358 -Q-------------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK  423 (534)
Q Consensus       358 -~-------------~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  423 (534)
                       .             ..+|+.++++.+++.++..++.++..++.+..+.                    .....+.++|+
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~--------------------~~~~~~~vlk~  251 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--------------------SIADQLPVLQR  251 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--------------------CHHHHHHHhCC
Confidence             2             2347777777777777666666665444332111                    01234558999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                      |..|.+.+.+++.+.++.++..++|+|+++.+  +.........+..+...+.++++|+++||+|+++++..
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~  321 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI  321 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence            99999999999999899989999999998854  33333333445567888999999999999999986553

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=4.4e-26  Score=241.20  Aligned_cols=285  Identities=15%  Similarity=0.247  Sum_probs=217.9

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      ++|..+..+++.......+...++...|.+.++ |++..+.+++.+++.+++.++++++|+++||+|||++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            346655656666666667767778888888888 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhc--cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHH-HHHHHHHHhhccc
Q 009469          284 VATVLTPVAA--RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSV-TGLAVSPILIQKF  360 (534)
Q Consensus       284 i~~~l~~~~~--~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~-igp~i~~~l~~~~  360 (534)
                      ++.+++++++  ..+++.+++.|++.|++.+..++.....+.+++|+++|++++++++.+..+|+. ++|+++..+....
T Consensus       105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  184 (452)
T PRK11273        105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN  184 (452)
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            9998887753  125778899999999999988888888999999999999999999999998864 5565544444445


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCC---Ccccccccccc--HHHhhcchhHHHHHHHHHH
Q 009469          361 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGG---SISKEAVSVIP--WKLILSKAPVWALIISHFC  435 (534)
Q Consensus       361 gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~ll~~~~~~~~~l~~~~  435 (534)
                      |||+.|++.+++.++..++.+++.+++++.....+.++.......   ....+..+..+  .+.+++++.+|...+..++
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVF  264 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHH
Confidence            999999998888777666666655554432111111000000000   00000001111  2336788999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS  489 (534)
Q Consensus       436 ~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~  489 (534)
                      .....+....|+|.|+++..|++..+++.+..+..++.+++.++.|+++||+++
T Consensus       265 ~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        265 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888888889999999999889999999998888899999999999999999943

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=1.1e-26  Score=238.37  Aligned_cols=272  Identities=19%  Similarity=0.230  Sum_probs=218.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      |..+....+..+ .....+.+++..|.+.+++|++..+++++.+++.++..++++++|+++||+|||+++.++.++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~   81 (377)
T TIGR00890         3 WYVLVGTVIMCF-TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG   81 (377)
T ss_pred             EEEeHHHHHHHH-HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence            344444444333 3344667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHH
Q 009469          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (534)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~  365 (534)
                      .+++++++  +++.+++.|++.|++.+..++.....+.+++| ++|++++++...+..+|..+++++.+.+.+..|||+.
T Consensus        82 ~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  158 (377)
T TIGR00890        82 FTFYAIAD--SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAA  158 (377)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHH
Confidence            99999998  89999999999999999888888889999995 6899999999999999998887777777888899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 009469          366 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT  445 (534)
Q Consensus       366 f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~  445 (534)
                      |++.+++.++..++.+...++++++....+.            +........++.++++.++.+.+..++..........
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (377)
T TIGR00890       159 FIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIG  226 (377)
T ss_pred             HHHHHHHHHHHHHHHHHheecCchhccccCc------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHH
Confidence            9999988877776666555443321111000            0000112355678888888887777776666666666


Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       446 ~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +.+.|.++ +|.+..+.+.+.....++.++++++.|++.||++||+...
T Consensus       227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  274 (377)
T TIGR00890       227 LYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS  274 (377)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            77777766 7888888999999999999999999999999999987544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.95  E-value=1.4e-25  Score=239.83  Aligned_cols=282  Identities=18%  Similarity=0.210  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcch-hHH-----HHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT-VGL-----IQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGV  279 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~-----i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~  279 (534)
                      +..++.+.++.++.+++...++...|.+.++++.+... ..+     +.++..++..++++++|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45667777888999999999999999999998644322 222     257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCChH--------HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 009469          280 IWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA  351 (534)
Q Consensus       280 ~~~~i~~~l~~~~~~~~~~--------~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~  351 (534)
                      ++++++.+++++++  ++.        .++++|+++|++.|+.++...++++|++|+++||++.++...+..+|.++|+.
T Consensus        95 ~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         95 VIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998  665        38899999999999999999999999999999999999999888888888887


Q ss_pred             HHHHhh--------cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcc
Q 009469          352 VSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK  423 (534)
Q Consensus       352 i~~~l~--------~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  423 (534)
                      +...+.        ..+|||+.|++.+++.++. ++.....+++++........++.   .. ....+.+..++++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~  247 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQQHVDKLEQG---DR-EGLQDGPKVSFKEIATK  247 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHHHHHHhhhhh---cc-ccccccccCCHHHHHHH
Confidence            665443        2579999999866544432 22223334432211110000000   00 00001112345556553


Q ss_pred             -hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          424 -APVWA-LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       424 -~~~~~-~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                       ++.+. .....++..+.++.+..|+|.|+++.+|++....++......++.+++.++.|+++||+|||+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~  320 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVI  320 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence             22222 223334455677888899999998878999888888888888999999999999999999997544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.95  E-value=1.1e-26  Score=238.73  Aligned_cols=274  Identities=21%  Similarity=0.263  Sum_probs=224.4

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhcc
Q 009469          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR  294 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~  294 (534)
                      .++....+...++...|.+.+++|++..+++++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   81 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-   81 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence            3456677888889999999999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH-HHHHHhhcccCchHHHHHHHHHH
Q 009469          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL-AVSPILIQKFGWPSVFYSFGSLG  373 (534)
Q Consensus       295 ~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp-~i~~~l~~~~gw~~~f~i~~~~~  373 (534)
                       +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++| .+++.+.+..+|++.|++.+++.
T Consensus        82 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 -SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             -hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence             8899999999999999999999999999999999999999999999999999999 57777778889999999888877


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhHHHHh-hhhC----CCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          374 SIWFALWLKKAYSSPKEDPELRAEEKR-HILG----GSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       374 ~i~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      ++..++.+...++.++.......++.. +..+    ...+........++.++++|.+|.+.+..++..........+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSP  240 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666655555443321111000000 0000    00000011122356678899999998888888888888899999


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK  490 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r  490 (534)
                      .|+.+.+|++..+.+.+.....++.++++++.+++.||..++
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            999988899999999999999999999999999999987443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=1.1e-25  Score=236.24  Aligned_cols=284  Identities=16%  Similarity=0.209  Sum_probs=220.0

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +.+|..++.+++..+...++.....+..|.+.+++|+++.+.+++.+++.++..++++++|+++||+|||+++.++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            34566777888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      +++.+++++++  +++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.++|
T Consensus        94 ~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w  171 (426)
T PRK12307         94 SVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGW  171 (426)
T ss_pred             HHHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCH
Confidence            99999999988  8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHH---HHHHH
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF---CHNWG  439 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~---~~~~~  439 (534)
                      |+.|++.++..++ .. .+  ....++..+.. .++..................++.+++++.++...+...   +....
T Consensus       172 ~~~f~i~~~~~~~-~~-~~--~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T PRK12307        172 RAAFFVGLLPVLL-VI-YI--RARAPESKEWE-EAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGA  246 (426)
T ss_pred             HHHHHHHHHHHHH-HH-HH--HHHCCCChHHH-HhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence            9999874433222 11 11  11111111110 000000000000000111124667788877765443322   22223


Q ss_pred             HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       440 ~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .+.+..++|.|+++ .|+++...+.+.+...++.++++++.|++.||+++|+...
T Consensus       247 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~  300 (426)
T PRK12307        247 NWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFS  300 (426)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34467788999987 5999999999999999999999999999999999987544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.95  E-value=1.4e-25  Score=234.39  Aligned_cols=264  Identities=13%  Similarity=0.096  Sum_probs=219.0

Q ss_pred             HHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh
Q 009469          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA  292 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~  292 (534)
                      .+..+...+....+.+.+|.+.++++.+..+.++..+++.+++.++++++|+++||+|||++++++.++++++.++++++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            44445566777888889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 009469          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (534)
Q Consensus       293 ~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~  372 (534)
                      +  +++.++++|+++|++.+...+....++.|++|+++|+++++++..+..+|..+||++++.+.+..|||+.|++.+++
T Consensus       102 ~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~  179 (413)
T PRK15403        102 T--SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM  179 (413)
T ss_pred             C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8  89999999999999988767777889999999999999999999999999999999999999889999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (534)
Q Consensus       373 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~  452 (534)
                      .++..++.++..|+.++++++...             .......++.++++|.+|...+..++.....+.+..+.|.+++
T Consensus       180 ~~i~~~~~~~~lp~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~  246 (413)
T PRK15403        180 GLIAFVGLLLAMPETVKRGAVPFS-------------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILI  246 (413)
T ss_pred             HHHHHHHHHHhCCCCccccCCCCC-------------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            777665545444543321111000             0001235677899999999988888888888888888899999


Q ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       453 ~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      +.+|+++.+.++......++.+++..+.+.+.++..+++
T Consensus       247 ~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~  285 (413)
T PRK15403        247 DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR  285 (413)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence            988999999999988888888888888777665444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.95  E-value=6.3e-26  Score=232.80  Aligned_cols=279  Identities=15%  Similarity=0.214  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469          211 LCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~  289 (534)
                      ..++..++.......+.+..|. +.+++|++..+++++.+++.+++.++++++|+++||+|||++++++.++.+++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3455556667777888899995 899999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----------c
Q 009469          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ----------K  359 (534)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~----------~  359 (534)
                      ++++. +++.+++.|++.|++.+. .++..+++++++|+++|++++++......+|..+++.+++.+..          .
T Consensus        85 ~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~  162 (366)
T TIGR00886        85 GLAVQ-SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH  162 (366)
T ss_pred             HHHhh-hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            87753 578889999999998654 56778999999999999999999998888888888877776654          3


Q ss_pred             cCchHHHH-HHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHH
Q 009469          360 FGWPSVFY-SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW  438 (534)
Q Consensus       360 ~gw~~~f~-i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~  438 (534)
                      .+||+.|+ +.+++.++..++.+...++.++++++..+.+..   ..............++.+++++++...+..++...
T Consensus       163 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (366)
T TIGR00886       163 LAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK---GARWSVGTGALGDQLKVFRDRHTWILALLYSVTFG  239 (366)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc---cccccccchhHHHHHHHHhccchhhHHHHHHHHHH
Confidence            48999994 445555544444444444433221111100000   00000000111145567888889888888887777


Q ss_pred             HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+....++|.|+++.+|+++.+++.+..+..+..++++++.|++.||+++|+...
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  295 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL  295 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH
Confidence            77888899999999989999999999999999999999999999999999986543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.9e-26  Score=227.67  Aligned_cols=275  Identities=18%  Similarity=0.228  Sum_probs=241.5

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +.+++.+.+..+...+..+.++++++..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            34467777788888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc-CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          283 SVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       283 ~i~~~l~~~~~~-~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      .+-.+..+++.+ .+++.+++++++.|++.+ .++.....++.|||++++|.++|++. ..++|..+..++++.++...|
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            999999988863 245699999999999855 56889999999999999999999999 899999999999999999998


Q ss_pred             ---chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHH
Q 009469          362 ---WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW  438 (534)
Q Consensus       362 ---w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~  438 (534)
                         |+.+..+..+..++..++.++...+.++.++..++...               ..++.++++++.|.+.+.++..+.
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------------~~~~~v~~~~~~W~lsllY~~tFG  232 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------------AQLKAVFSNKDTWLLSLLYFATFG  232 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------------hHHHHHhcCcchHHHHHHHHHHHH
Confidence               99999999998888888888887776553221111110               235668889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ++.++..++|.|+++++|.+..+++.+.....+.+.+.|+++|+++||+|.++...
T Consensus       233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~  288 (417)
T COG2223         233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL  288 (417)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence            99999999999999999999999999999999999999999999999999888644

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.95  E-value=2.3e-25  Score=231.31  Aligned_cols=269  Identities=16%  Similarity=0.196  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      +.......+..........+.+|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++.++.++..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            33444555566666667778899999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 009469          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (534)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i  368 (534)
                      +.+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+|++.|++
T Consensus        85 ~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~  162 (392)
T PRK10473         85 CSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT  162 (392)
T ss_pred             HHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence            88887  7888999999999999998999999999999999999999999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      .+++.++..++.+...++++++++.....               .....++.++++.++...+...+.......+..+.|
T Consensus       163 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (392)
T PRK10473        163 MAAMGILVLLLSLFILKETRPARAPAASS---------------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSP  227 (392)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCccc---------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            88887776666555555443221110000               011234567788777666655555555555666778


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .++++.+|++..+.+.+.....++.+++.++.+++.||+++|+...
T Consensus       228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~  273 (392)
T PRK10473        228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLML  273 (392)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            8888878999999999999999999999999999999999987544

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=5.6e-25  Score=234.04  Aligned_cols=284  Identities=14%  Similarity=0.199  Sum_probs=228.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~  287 (534)
                      .+.++++..++..++.+.+.+..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34455566777788888888999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHH
Q 009469          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (534)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~  367 (534)
                      ++.+++  +++.+++.|+++|++.+...+...+++.+++|+++|++++++......+|..+||.+++.+.+..|||+.|+
T Consensus        91 ~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~  168 (471)
T PRK10504         91 FCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL  168 (471)
T ss_pred             HHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence            888877  788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHh-----------hhhCCC--------------------------cccc
Q 009469          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR-----------HILGGS--------------------------ISKE  410 (534)
Q Consensus       368 i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--------------------------~~~~  410 (534)
                      +...+..+..++.....++.+....+.+.....           ...+..                          +...
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNN  248 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            887776666555555444332221111100000           000000                          0001


Q ss_pred             ccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          411 AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK  490 (534)
Q Consensus       411 ~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r  490 (534)
                      ..+..+. .+++++.++...+..++...+......+.|.|++...|.++..++++.....++.+++.++.+++.||+++|
T Consensus       249 ~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~  327 (471)
T PRK10504        249 NRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR  327 (471)
T ss_pred             CCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            1122233 378899998888888888888777778889999887899999999999988899999999999999999998


Q ss_pred             cchH
Q 009469          491 GLSI  494 (534)
Q Consensus       491 ~~~i  494 (534)
                      +.+.
T Consensus       328 ~~~~  331 (471)
T PRK10504        328 RVLV  331 (471)
T ss_pred             HHHH
Confidence            7544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.95  E-value=2.6e-25  Score=227.29  Aligned_cols=272  Identities=14%  Similarity=0.100  Sum_probs=218.3

Q ss_pred             HHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh
Q 009469          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA  292 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~  292 (534)
                      ....++..+......+.+|.+..+++.+..+++++.+++.++..++.+++|+++||+|||+++.++.++..++.++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777888888999999999999999999999999999999999999999999999999888877776665


Q ss_pred             c---cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469          293 A---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       293 ~---~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      .   ..+++.+++.|++.|++.+...++..+++.|++|+++|++++++...+..+|.++||.+++.+.+..||++.|++.
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~  164 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD  164 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4   1267889999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHH-HHHH
Q 009469          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL-TWMP  448 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~-~~lp  448 (534)
                      ++..++..++.+....+++++.+..+.+++.         .......++.++++|.++...+..++......... .+.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (365)
T TIGR00900       165 AVGFAISALLIVSVRIPELAASEIQALSNAV---------LRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFP  235 (365)
T ss_pred             HHHHHHHHHHHHhcccccCCCccccccchhH---------HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            7766555444433322221111111000000         00011245667889988888888777777776666 7889


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      .|.++.+|.+..+.+.+.....++.+++.++.+++.||+++++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  280 (365)
T TIGR00900       236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALM  280 (365)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            999887899999999999999999999999999999999988643

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.95  E-value=3e-25  Score=233.96  Aligned_cols=286  Identities=17%  Similarity=0.258  Sum_probs=219.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      +|..+..+.+.....+.....+....|.+.+ +|+++.+.+++.+++.++..++.++.|+++||+|||+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            3555566666666666666667777777775 599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcc--CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-ccC
Q 009469          285 ATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFG  361 (534)
Q Consensus       285 ~~~l~~~~~~--~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-~~g  361 (534)
                      +.+++++.+.  .+++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|+.+++.+.+.+.. ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            8887766431  2567788899999999999889899999999999999999999999999999999888776544 579


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHH-HhhhhC--CCcccccc--ccccHHHhhcchhHHHHHHHHHHH
Q 009469          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE-KRHILG--GSISKEAV--SVIPWKLILSKAPVWALIISHFCH  436 (534)
Q Consensus       362 w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~ll~~~~~~~~~l~~~~~  436 (534)
                      ||+.|++.+++.++..++.++..++.++.....+.++ +.+...  ....+...  +....+.+++++.+|...+..++.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFV  263 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHH
Confidence            9999999888887766666555555432211000000 000000  00000000  011123467889999988888887


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          437 NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       437 ~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      ....+...+|+|.|+++..|+++.+++++..+..++++++++++|++.||+++++
T Consensus       264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            7788888899999999888999999999999999999999999999999996543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=2.5e-25  Score=229.53  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=219.9

Q ss_pred             hhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      +....+.+.+|.+.+++|+++.+++++.+++.++..++.+++|+++||+|||+++.++.++.+++.+++.+++  +++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHH
Confidence            3455677889999999999999999999999999999999999999999999999999999999999998887  88899


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~  380 (534)
                      ++.|++.|++.+...+...+++.+++|+++|++++++.+.+..+|..++|.+++.+.+..+|++.|++.+++.++..++.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888877766665


Q ss_pred             HHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 009469          381 LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT  460 (534)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~  460 (534)
                      ....++.++++++.+..            ......+++..++++.++...+..++...+.+....+.|.++.+.+|+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  230 (377)
T PRK11102        163 FFFIPETLPKERRQPFH------------LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQ  230 (377)
T ss_pred             HHhCCccCcccccCCCC------------hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHH
Confidence            55555433221110000            000112456678888888877777777777777777888888888899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          461 ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       461 ~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                      +.+++.....++.+++.++.+++.||+|+|+....
T Consensus       231 ~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  265 (377)
T PRK11102        231 NFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF  265 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            99999999999999999999999999999986543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.95  E-value=7.9e-25  Score=230.46  Aligned_cols=274  Identities=16%  Similarity=0.176  Sum_probs=205.2

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHH-HHHH-----HHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLI-QSSF-----FWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i-~s~~-----~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      .||+....+++..++.+++...++...|.+.++++.++.+.+.+ .+..     .++..+++++.|+++||+|||++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            34667888888999999999999999999999999988876543 3322     22334688999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCChH--------HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Q 009469          278 GVIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG  349 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~~~~~~--------~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~ig  349 (534)
                      +.++++++.+++++++  +++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..++
T Consensus        92 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         92 TLSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  554        468999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHhh--------cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhh
Q 009469          350 LAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL  421 (534)
Q Consensus       350 p~i~~~l~--------~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  421 (534)
                      +.+++.+.        +.+|||++|++.++...+    .+.. ++.+++.++...++.+          ......++...
T Consensus       170 ~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~----~~~~-~~~~~e~~~~~~~~~~----------~~~~~~~~~~~  234 (434)
T PRK15075        170 ALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF----IFLI-RRSLEETEEFLARKHR----------PSMREIFRSLA  234 (434)
T ss_pred             HHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH----HHHH-HHhcCCCHHHHHhhhc----------cccccHHHHHH
Confidence            88777653        468999999874432211    1111 1111111110000000          00011233344


Q ss_pred             cchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          422 SKAPVWALI-ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       422 ~~~~~~~~~-l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ++++.+... +..++.....+....|.|.|+++.+|++..+.+++..+..++.+++.++.|+++||++||+..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~  308 (434)
T PRK15075        235 ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLI  308 (434)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            555544433 3334455667778889999999888999999999888889999999999999999999997644

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=2.9e-25  Score=229.78  Aligned_cols=286  Identities=24%  Similarity=0.367  Sum_probs=220.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +++|..+..+++..+...+.........|.+.+++|.+..+++++.+++.++..++.++.|+++||+|||+++.++.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            34566777777777777788888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      +++.+++.+.+  +++.+++.+++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..||
T Consensus        93 ~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        93 SVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            99998888887  7888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHH----hhhh---C-C-----Ccc-ccc-cccccHHHhhcc---h
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK----RHIL---G-G-----SIS-KEA-VSVIPWKLILSK---A  424 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~----~~~~---~-~-----~~~-~~~-~~~~~~~~ll~~---~  424 (534)
                      ++.|++.+++.++..++.+...++.++.....+.++.    ....   . .     .++ ... .....++.++++   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            9999988766666655555555544321111100000    0000   0 0     000 000 001112222322   3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      ..+.+.+..++.....+....++|.+.. .+|++..+.+.+.....++.++++++.+++.||+++|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV  316 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            3444555555666667777788885554 47999999999999999999999999999999999883

>PRK10133 L-fucose transporter; Provisional

Probab=99.95  E-value=1e-24  Score=229.43  Aligned_cols=274  Identities=15%  Similarity=0.191  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      +..+......++...+.........|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            45556666677777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-c--
Q 009469          286 TVLTP---VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-K--  359 (534)
Q Consensus       286 ~~l~~---~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-~--  359 (534)
                      .+++.   +++  +++.++++|+++|+|.+...+..+.++.++.|+++|...+++.+....+|..++|.+++.+.. .  
T Consensus       105 ~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~  182 (438)
T PRK10133        105 AALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_pred             HHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            98763   455  899999999999999999999999999998877777778999999999999999999876541 0  


Q ss_pred             -----------------------cCchHHHHHHHHHHHHHHHHH-HHhhcCCCCCChhhhHHHHhhhhCCCccccccccc
Q 009469          360 -----------------------FGWPSVFYSFGSLGSIWFALW-LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVI  415 (534)
Q Consensus       360 -----------------------~gw~~~f~i~~~~~~i~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (534)
                                             .+||++|+....+..+..++. ....++.+.+ +. .+ +          .......
T Consensus       183 ~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~-~~-~~-~----------~~~~~~~  249 (438)
T PRK10133        183 HQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-NH-SD-A----------KQGSFSA  249 (438)
T ss_pred             ccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cc-cc-c----------cccchhh
Confidence                                   245666654443333222222 2212221110 00 00 0          0000112


Q ss_pred             cHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          416 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY-NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       416 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~-~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .++.++++|.++...+..++..........|++.|+ ++.+|+++.++++......++.++++++++++.||+++|+.+.
T Consensus       250 ~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~  329 (438)
T PRK10133        250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA  329 (438)
T ss_pred             hHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            356688899888877777777778887888888885 5668999999999999999999999999999999999987644

>PRK11043 putative transporter; Provisional

Probab=99.94  E-value=2e-24  Score=224.94  Aligned_cols=258  Identities=17%  Similarity=0.214  Sum_probs=214.3

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhcc
Q 009469          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR  294 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~  294 (534)
                      ..++..+....+.+.+|.+.+++|.++.+++++.+++.++..++++++|+++||+|||+++.++.++..++.+++.+++ 
T Consensus        14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-   92 (401)
T PRK11043         14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-   92 (401)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-
Confidence            3455556677788888999999999999999999999999999999999999999999999999999999998888887 


Q ss_pred             CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHH
Q 009469          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS  374 (534)
Q Consensus       295 ~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~  374 (534)
                       +++.+++.|++.|++.+...+...+++.|++|++++++.++.......+|..++|.+++++.+.+|||+.|++.+++.+
T Consensus        93 -~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~  171 (401)
T PRK11043         93 -SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL  171 (401)
T ss_pred             -CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             8899999999999998888888889999999999999999999999999999999999999999999999998888777


Q ss_pred             HHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          375 IWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV  454 (534)
Q Consensus       375 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~  454 (534)
                      +..++.+...++.++++ .  + +              ...+++++++++.++...+...+.....+....+.|.++++ 
T Consensus       172 ~~~~~~~~~~~~~~~~~-~--~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  232 (401)
T PRK11043        172 LLILPTLRLKPSKKARK-Q--S-Q--------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-  232 (401)
T ss_pred             HHHHHHHHcCCCCCccc-c--c-h--------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence            66655544433222111 0  0 0              01246667888888776666666666667777888988876 


Q ss_pred             hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          455 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       455 ~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +|++..+.++......++.+++.++.+++.||+++++..
T Consensus       233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~  271 (401)
T PRK11043        233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL  271 (401)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            799999999988888889999999999999999988743

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=1.1e-25  Score=245.62  Aligned_cols=282  Identities=17%  Similarity=0.216  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~  289 (534)
                      +.+.+..+.........+..++.++++|+++..+.|++.+.+.+++.++.++.|++.||+|||+++.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            33444566666777888889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhc-------------------------------------------------cCChHHHHHHHHHHhhcccchhhHHHH
Q 009469          290 PVAA-------------------------------------------------RIGLPFLLIMRAFMGIGEGVAMPAMNN  320 (534)
Q Consensus       290 ~~~~-------------------------------------------------~~~~~~ll~~r~l~Gig~g~~~~~~~~  320 (534)
                      ++.+                                                 +..+..++++|+++|+|.+..++...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7753                                                 012556789999999999999999999


Q ss_pred             HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------CchHHHHHHHHHHHHHHH
Q 009469          321 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF----------------------GWPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       321 ~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~----------------------gw~~~f~i~~~~~~i~~i  378 (534)
                      ++.|++|+++|+++++++..+..+|.++|+++++++.+.+                      +|+..|++.+++.++..+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v  275 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI  275 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988643                      156667777777776665


Q ss_pred             HHHHhhcCCCCCChhh--hHHHHhhhhC-CCcc-c-----cccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          379 LWLKKAYSSPKEDPEL--RAEEKRHILG-GSIS-K-----EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       379 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~-~-----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      +++.+.++.++.....  +..+...... .... .     .......++.++++|.++...+..++...+.+++.+|+|.
T Consensus       276 ~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~  355 (633)
T TIGR00805       276 PFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPK  355 (633)
T ss_pred             HHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444433221111  0000000000 0000 0     0011234677899999999999999999999999999999


Q ss_pred             HHHHhhCCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Q 009469          450 YYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~-~~iig~~i~g~l~dr~g~r~  491 (534)
                      |+++.+|+++.+++++..+..+ +.+++.+++|+++||++.+.
T Consensus       356 yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~  398 (633)
T TIGR00805       356 YLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNV  398 (633)
T ss_pred             HHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccH
Confidence            9999999999999999887776 66899999999999998553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.94  E-value=7.1e-25  Score=231.97  Aligned_cols=278  Identities=14%  Similarity=0.163  Sum_probs=217.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      +|.++..+++...........++..++.+.+++|++..+++++.+.+.++..++.+++|+++||+|||++++++.++.++
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   96 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL   96 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence            47777777777666666666788889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHH-HHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          285 ATVLTPVAARIGLPFLLI-MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~-~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      +.+++++++  +++.+++ .|++.|++.+...++..+++.++++ ++|++++++...+..+|..++|++++.+.+.+|||
T Consensus        97 ~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr  173 (455)
T TIGR00892        97 GMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR  173 (455)
T ss_pred             HHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence            999998887  6766654 5789999998777778888999995 78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhH-HHHhhhh-CCCc------cccccccccHHHhhcchhHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA-EEKRHIL-GGSI------SKEAVSVIPWKLILSKAPVWALIISHFC  435 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~------~~~~~~~~~~~~ll~~~~~~~~~l~~~~  435 (534)
                      ++|++.+++.++..+..++..+..+.+.....+ ++..... ....      ..+..+..++ .++++|.++...+..++
T Consensus       174 ~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  252 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVI  252 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHHHHH
Confidence            999999888776555444443322111000000 0000000 0000      0000011112 46788999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL  487 (534)
Q Consensus       436 ~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~  487 (534)
                      ..++.+....++|.|+++ .|++..+++++.++..++.++++++.|++.||.
T Consensus       253 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888888888899999987 699999999999999999999999999999974

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=1.7e-24  Score=225.65  Aligned_cols=273  Identities=14%  Similarity=0.116  Sum_probs=209.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV  287 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~  287 (534)
                      .+....++.++...........++.+.+++|.+..+.+++.+.+.++..++.+++|++.||+|||+++..+.++++++.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~   93 (402)
T TIGR00897        14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA   93 (402)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            34444444444545544455566777788999999999999999999999999999999999999999999999988876


Q ss_pred             HHh---hhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHH-HHHHHHHHHhhcccCch
Q 009469          288 LTP---VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQKFGWP  363 (534)
Q Consensus       288 l~~---~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~-~igp~i~~~l~~~~gw~  363 (534)
                      ++.   +.. .+++.+++.|++.|++.+...+...+.+.+++|+++|++++|+...+.++|. +++|++++.+.+.+||+
T Consensus        94 ~~~~~~~~~-~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~  172 (402)
T TIGR00897        94 AFIVFGLGH-ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM  172 (402)
T ss_pred             HHHHHhccC-ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence            553   221 2678888999999999888778888889999999999999999999999996 68999999999888977


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      ..+|.......+..++.++..++.+++++..++.           +.......++.++++|.++...+..++.....+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (402)
T TIGR00897       173 NTLWSALAFVLTGGVIALFSNKDIFTPQHMQTRE-----------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGF  241 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCcccccCCc-----------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            6666544443333333333333322111110000           00001123566889999998888888888888889


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      .++.|.|+++ +|++..+.+.+.....++.+++.++.|+++||+++|+..
T Consensus       242 ~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       242 AVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            9999999876 799999999988899999999999999999999988753

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=99.94  E-value=3.2e-24  Score=226.03  Aligned_cols=278  Identities=17%  Similarity=0.193  Sum_probs=203.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHH-HHhhh--CCCcchhHHHH-----HHHHHHHHHHHHHHHHHHhhhCCchH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEF--NWNSTTVGLIQ-----SSFFWGYLLTQIVGGIWADKFGGKPV  274 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~g~i~-----s~~~l~~~~~~~~~G~l~Dr~Grr~~  274 (534)
                      .++|+.+..+++..++.+++...++...+. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            344667778888889999999998888775 45555  66665 45543     34556677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCChH--------HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Q 009469          275 LGFGVIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS  346 (534)
Q Consensus       275 l~~g~~~~~i~~~l~~~~~~~~~~--------~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~  346 (534)
                      +.++.++++++.+++++++  ++.        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|.
T Consensus        97 l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999998  655        588899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc--------ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHH
Q 009469          347 VTGLAVSPILIQ--------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK  418 (534)
Q Consensus       347 ~igp~i~~~l~~--------~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (534)
                      +++..+...+..        .+|||+.|++.+++.++.. ......++.++    ..+...+.  +  +.++  +....+
T Consensus       175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~-~l~~~~~es~~----~~~~~~~~--~--~~~~--~~~~~~  243 (438)
T PRK09952        175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL-WVRNGMEESAE----FEQQQHEQ--A--AAKK--RIPVIE  243 (438)
T ss_pred             HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH-HHHHhCCCChh----HHHHHhhc--c--cccc--cCCHHH
Confidence            998877776652        5799999988766543321 11111122211    10000000  0  0000  011123


Q ss_pred             HhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          419 LILSKAPVWALII-SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       419 ~ll~~~~~~~~~l-~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .++++++.+...+ ..++..+..+....|.|.|+++.+|++......+.....+..+++.++.|+++||++||+..+
T Consensus       244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~  320 (438)
T PRK09952        244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYI  320 (438)
T ss_pred             HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            3566766666544 445556677788889999998888988876655666667778888999999999999998654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=3.6e-24  Score=222.46  Aligned_cols=267  Identities=15%  Similarity=0.219  Sum_probs=220.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      .++.+.+..+..++..+......+.+|.+.+++|.++.+++++.+++.++..++.+++|+++||+|||+++.++.++.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~   85 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL   85 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence            35566666666666667777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchH
Q 009469          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~  364 (534)
                      +.+++.+++  +++.+++.|++.|++.+...+....++.|+++++++++++++...+..+|..++|.+++.+.+..|||+
T Consensus        86 ~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~  163 (394)
T PRK11652         86 GTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRA  163 (394)
T ss_pred             HHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence            999888887  889999999999999888888888899999999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  444 (534)
                      .|++.+++.++..++.....++.++.+++.. +               ....++.+++++.++...+..+....+...+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADARRT-R---------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFE  227 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccchh-H---------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999887776655554444454332211110 0               11345667888888877766666666666667


Q ss_pred             HHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS  489 (534)
Q Consensus       445 ~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~  489 (534)
                      .+.+.++++.+|++..+.+++.....++.+++.++.+++.||+++
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  272 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  272 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888988889999999998888888888999999999999883

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.94  E-value=9.9e-27  Score=232.51  Aligned_cols=306  Identities=18%  Similarity=0.251  Sum_probs=243.0

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      .+.++.+++.++..++..++.+.+....+.+++.||++++..|++.+.+.+.+.+++|+.|+++||+.||+++.+|..+|
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW  108 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence            34477888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-  361 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-  361 (534)
                      .++.+.++++.  .+|+++++|.+.|+|.+...++++++++|.||..+|++++++++.+..+|..+|.+++..+....+ 
T Consensus       109 ~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  109 TLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            99999999997  799999999999999999999999999999999999999999999999999999999999988766 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHH
Q 009469          362 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTF  441 (534)
Q Consensus       362 w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~  441 (534)
                      |||.|++.+++.+++.++.+.+.+++++...+....+..     ..........+.+.+.+++.+....+......+...
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~G  261 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-----MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIG  261 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-----CCCCccchHHHHHHHHccCceeeehHHHHHHHHhcc
Confidence            999999999999999999888888766542221111100     011112223455666676777777777776666666


Q ss_pred             HHHHHHHHHHHHh---hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHHHHHHh
Q 009469          442 ILLTWMPTYYNQV---LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLSITAVRKIMQSIGFLGPAFFLTQ  515 (534)
Q Consensus       442 ~~~~~lp~~~~~~---~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r--~~~i~~~~~~~~~~~~~~~~~~l~~  515 (534)
                      .+..|.|.+....   .|++..+..++..+..+++.+|.+++|.++||+.+.  +............++..+.+.++..
T Consensus       262 s~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~  340 (493)
T KOG1330|consen  262 SLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL  340 (493)
T ss_pred             ccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence            6666666665443   355666777788888899999999999999996432  2122222334444444444444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.94  E-value=8.9e-25  Score=231.44  Aligned_cols=288  Identities=18%  Similarity=0.247  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCC--------cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWN--------STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      +...+++.+..++..++...+....+.+..+++.+        ..+.+++.+++.++..++++++|+++||+|||+++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            44444445555666777778888888888888777        8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc-cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHH---
Q 009469          278 GVIWWSVATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS---  353 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~---  353 (534)
                      +.++++++.+++.+.. ..+++.+++.|++.|++.+...+...++++|++|+++|++++++++.+..+|.+++++++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998886654 224568999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCC-----ChhhhHHHHhhhhCCCccccc-----------------
Q 009469          354 PILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----DPELRAEEKRHILGGSISKEA-----------------  411 (534)
Q Consensus       354 ~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----------------  411 (534)
                      ..+....+||+.|++.++..++..+. ..+.++.+..     ..+...+..............                 
T Consensus       187 ~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (481)
T TIGR00879       187 VSLNNTLGWRIPLGLQLIPAGLLFLG-LFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR  265 (481)
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHHH-HhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            66667789999999865555444333 3334443210     100000000000000000000                 


Q ss_pred             cccccHHHhhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          412 VSVIPWKLILS------KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD  485 (534)
Q Consensus       412 ~~~~~~~~ll~------~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~d  485 (534)
                      .....++.+++      .+.++...+..+...........+.|.++++ .|++..+++.+..+..++.+++.++.|++.|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  344 (481)
T TIGR00879       266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD  344 (481)
T ss_pred             hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00001222222      2223333333333333344556677777766 6999988899999999999999999999999


Q ss_pred             HhhcccchHH
Q 009469          486 TLVSKGLSIT  495 (534)
Q Consensus       486 r~g~r~~~i~  495 (534)
                      |+++|+....
T Consensus       345 ~~~~~~~~~~  354 (481)
T TIGR00879       345 RFGRRPLLLI  354 (481)
T ss_pred             HhcchHHHHH
Confidence            9999986553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.93  E-value=8.9e-24  Score=220.36  Aligned_cols=270  Identities=17%  Similarity=0.199  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      +.+++..++..++.....++..|.+++++|++..+.|++.+.+.+++.+++++.|++.||+|||+++.++.++++++.++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            44555566667777788889999999999999999999999999999999999999999999999999999999999888


Q ss_pred             Hhhhc-cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 009469          289 TPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------  359 (534)
Q Consensus       289 ~~~~~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~--------  359 (534)
                      +..+. ..+++.+++.|++.|+|.+...+....++.++.|+++|++.+++.+....+|..+||.+++.+...        
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~  164 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD  164 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence            65432 227889999999999999999999999999999999999999999999999999999999887532        


Q ss_pred             ------------------cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhh
Q 009469          360 ------------------FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL  421 (534)
Q Consensus       360 ------------------~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  421 (534)
                                        .+||++|++.+++.++..++..+. +.++.+.++  + ++           .......+.++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~-~~p~~~~~~--~-~~-----------~~~~~~~~~~~  229 (410)
T TIGR00885       165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLT-KMPALNHSD--A-KQ-----------ISFSASLSRLA  229 (410)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccc--c-cc-----------ccchhhHHHHH
Confidence                              359999998888776655444322 211111100  0 00           00011345678


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          422 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL-KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       422 ~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~-g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      ++|.++...+..+++........++++.|.++.. +.+...++........+..+|+++++++.||+++|+.+
T Consensus       230 ~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l  302 (410)
T TIGR00885       230 RIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVL  302 (410)
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            8999999888888888888888899999997632 34445556667777788899999999999999988754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=9.4e-25  Score=228.65  Aligned_cols=279  Identities=19%  Similarity=0.312  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHH-HhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMS-IAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      .++..++..++....+...++ ..+..+.++.+....+.+++.++++++++++.+++|.+.||++..+.+....+++.+.
T Consensus        45 ~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~  124 (495)
T KOG2533|consen   45 FILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLF  124 (495)
T ss_pred             HHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHH
Confidence            344445555555556555444 3344467889999999999999999999999999999999999888888888888888


Q ss_pred             HHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh------cc
Q 009469          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI------QK  359 (534)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~------~~  359 (534)
                      .++.....  |++.+++.|++.|+..+..+|....+++.||.+++|++.+|++++...+|.++|.+++..+.      ..
T Consensus       125 ~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  125 GFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             HHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            87777777  89999999999999999999999999999999999999999999999999999999999873      34


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHH-----hhh-hCCCccccccccccHHHhhcchhHHHHHHHH
Q 009469          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK-----RHI-LGGSISKEAVSVIPWKLILSKAPVWALIISH  433 (534)
Q Consensus       360 ~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~  433 (534)
                      .||||.|++.+++.++..++.++..|+.|.+..-..++++     +.. .......+..+...+++++++|.+|.+.+..
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~  282 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCY  282 (495)
T ss_pred             CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHH
Confidence            6899999999999999999888888888774433333321     111 1111111225667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          434 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL  487 (534)
Q Consensus       434 ~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~  487 (534)
                      ++.....+++.+|+|.|+++..|++..++..+..+..++++++.++.|+++||+
T Consensus       283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  283 FFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999999996679999999999999999999999999999995

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.93  E-value=7.7e-24  Score=226.74  Aligned_cols=287  Identities=17%  Similarity=0.260  Sum_probs=209.7

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      ++|+.+..+++..++..++....++.+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   96 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            45777788888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      ++.+++++++  +++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+.++||
T Consensus        97 ~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~  174 (496)
T PRK03893         97 VGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR  174 (496)
T ss_pred             HHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence            9999999887  88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHH-hhhhCCCccccccccccH----------HHhhc----------
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK-RHILGGSISKEAVSVIPW----------KLILS----------  422 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~ll~----------  422 (534)
                      +.|++.++..++ .++.....++.++..+....... ....+.....+. .....          ...+.          
T Consensus       175 ~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
T PRK03893        175 ALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH-RIINILLTLAAAAALWFCFAGNLQNAAIVA  252 (496)
T ss_pred             HHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence            999864433322 22222222222110000000000 000000000000 00000          00000          


Q ss_pred             --------------------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHH
Q 009469          423 --------------------K-APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG  481 (534)
Q Consensus       423 --------------------~-~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g  481 (534)
                                          + +....+.+..++.....+....++|.|+++.+|++..+++++.+...++.+++.++.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g  332 (496)
T PRK03893        253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG  332 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                0 0000000011111111123456889999877899999999999999999999999999


Q ss_pred             HHHHHhhcccchH
Q 009469          482 WIADTLVSKGLSI  494 (534)
Q Consensus       482 ~l~dr~g~r~~~i  494 (534)
                      ++.||+++|+..+
T Consensus       333 ~l~dr~g~~~~~~  345 (496)
T PRK03893        333 FLGDWLGTRKAYV  345 (496)
T ss_pred             HHHHHhcchHHHH
Confidence            9999999987544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.93  E-value=1e-23  Score=217.10  Aligned_cols=261  Identities=14%  Similarity=0.096  Sum_probs=203.7

Q ss_pred             HHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH-HHHHHHHHHHHHHhhh
Q 009469          215 AFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVA  292 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~g~~~~~i~~~l~~~~  292 (534)
                      ..++..+......+.+|. +.+++|.+..++|++.+++.+...+.+++.|+++||+|||+.++ .+.++.+++.++++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence            355666666777777776 56889999999999999999999999999999999999988765 4566666677777887


Q ss_pred             ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhH--HHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHH
Q 009469          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS--LAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG  370 (534)
Q Consensus       293 ~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~--~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~  370 (534)
                      +  +++.+++.|++.|.+.+...+...+++.++.|+++|+.+  .++...+.++|.++||++++.+.+.+|||+.|++.+
T Consensus        85 ~--~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~  162 (375)
T TIGR00899        85 R--NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAA  162 (375)
T ss_pred             c--hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHH
Confidence            7  788888899999888777888888889999887777654  578888889999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          371 SLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY  450 (534)
Q Consensus       371 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~  450 (534)
                      ++.++..++.++..++.++..+...  .               ..+.+..++++.++.+.+..++..........++|.|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPRGAPGAL--T---------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLL  225 (375)
T ss_pred             HHHHHHHHHHHHhCCCcccCccccc--C---------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            8777666666555555433211100  0               0123345667777766666665555555666778999


Q ss_pred             HHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          451 YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       451 ~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +++.+|.++.+.+.+.....+..+++.++.|++.||+++|+...
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  269 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLML  269 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHH
Confidence            88888999999998888777788888999999999999997544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.93  E-value=1.5e-23  Score=216.95  Aligned_cols=262  Identities=16%  Similarity=0.104  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      +...++..++.........+.+|.+.+++|.+..++|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666777788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 009469          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (534)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i  368 (534)
                      +++++  +++.++++|++.|++.+...+...+.+.+..++++|+++++++..+..+|..+||.+++.+.+...|.. .+.
T Consensus        88 ~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~~  164 (381)
T PRK03633         88 LGLMV--GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL-PWV  164 (381)
T ss_pred             HHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH-HHH
Confidence            88888  899999999999999998888888888899999999999999999999999999999999877543332 232


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      .+.+......+. .. +.+++..++    +              +..++++.++++.++......++..........++|
T Consensus       165 ~~~~~~~~~~~~-~~-~~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  224 (381)
T PRK03633        165 TGLVLAAILPLL-FT-RILNQQAEN----H--------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMP  224 (381)
T ss_pred             HHHHHHHHHHHH-Hh-cccCCCCCC----C--------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222211111 11 111111000    0              012345567788777665555555555666777899


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .|+++ .|.+....+.+.+...++.++++++.|++.||+++|+.+.
T Consensus       225 ~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~  269 (381)
T PRK03633        225 LYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLR  269 (381)
T ss_pred             HHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHH
Confidence            99987 6999999999999999999999999999999999987544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=7.2e-24  Score=225.92  Aligned_cols=289  Identities=17%  Similarity=0.234  Sum_probs=203.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhh--------CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF--------NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG  276 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~  276 (534)
                      .++.++++.+..+..+++...+++..+.+.+.+        +.+..+.+++.+++.++..++++++|+++||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            355666666777888888889999888888877        888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh---------cc-CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Q 009469          277 FGVIWWSVATVLTPVA---------AR-IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS  346 (534)
Q Consensus       277 ~g~~~~~i~~~l~~~~---------~~-~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~  346 (534)
                      ++.++++++.++++++         ++ ..++.++++|+++|++.|...+...++++|++|+++|++++++...+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            9999999888877753         11 1246788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh--------cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hhhHHHH---hhhhCCCcccccccc
Q 009469          347 VTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP-ELRAEEK---RHILGGSISKEAVSV  414 (534)
Q Consensus       347 ~igp~i~~~l~--------~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~  414 (534)
                      ++++++++.+.        +.+|||+.|++.+++.++..+. .+..++.++... +.+.++.   .......... ....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~  247 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQAL  247 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHHH
Confidence            99988876653        3568999999887777665544 344555442100 0000000   0000000000 0000


Q ss_pred             ccHHHhhc-----chhHH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHH
Q 009469          415 IPWKLILS-----KAPVW-----AL----IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG  480 (534)
Q Consensus       415 ~~~~~ll~-----~~~~~-----~~----~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~  480 (534)
                      ...+..++     .+.++     .+    ....+....+.+...++.|.+..+ .|++.....+......+..+++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~  326 (479)
T PRK10077        248 QEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLA  326 (479)
T ss_pred             HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            01111111     01110     00    111112222233445666777766 68888777777778888999999999


Q ss_pred             HHHHHHhhcccchHHH
Q 009469          481 GWIADTLVSKGLSITA  496 (534)
Q Consensus       481 g~l~dr~g~r~~~i~~  496 (534)
                      ++++||+|+|++++.+
T Consensus       327 g~l~dr~g~r~~~i~~  342 (479)
T PRK10077        327 IMTVDKFGRKPLQIIG  342 (479)
T ss_pred             HHHHHHhcChHHHHHh
Confidence            9999999999865543

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=9.6e-24  Score=216.12  Aligned_cols=248  Identities=12%  Similarity=0.169  Sum_probs=199.9

Q ss_pred             hhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      .....+++.+|.+.+++|++..+++++.+++.++..++.++.|+++||+|||+++.++.++.+++.+.+ ..+  +.+.+
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l   90 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALL   90 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHH
Confidence            334567889999999999999999999999999999999999999999999999999998888887776 555  78888


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc--CchHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~--gw~~~f~i~~~~~~i~~i  378 (534)
                      ++.|++.|++.+...+....++.+++| ++|++++++++.+..+|..+++.+++.+.+..  +||+.|.+.+++.++...
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~  169 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL  169 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999888888888999995 68999999999999999999999999888765  399988877655443332


Q ss_pred             HHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 009469          379 LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN  458 (534)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s  458 (534)
                      ...   ++.+++++...               .......++++++|.++...+..++....++....|+|.|+++ .|++
T Consensus       170 ~~~---~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~  230 (355)
T TIGR00896       170 AWI---PQVRRRVAANQ---------------TTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGAS  230 (355)
T ss_pred             HHh---hhhccccCCCC---------------CCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence            222   11111110000               0001224457788888888777777777788888999999987 6999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          459 LTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       459 ~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      ..+.+.+.+...++.++++++.|++.||+++|+
T Consensus       231 ~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~  263 (355)
T TIGR00896       231 AATAGSLLALMQLAQAASALLIPALARRVKDQR  263 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence            999999999999999999999999999995544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=2.3e-23  Score=216.76  Aligned_cols=263  Identities=17%  Similarity=0.186  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      ++.+....+..++..++..+..+.+|. +.+++|.+..++|++.+++.+++.+++++.|+++||+|||+++.++.+++++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCAL   93 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHH
Confidence            344555666667777777788888887 5788999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHhhhc---c---CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          285 ATVLTPVAA---R---IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       285 ~~~l~~~~~---~---~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      +.+++.++.   +   .++..+++.|+++|++.+...+....++.+++|+++|++++++...+..+|.++|+.+++.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            766554432   1   1355789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHH
Q 009469          359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW  438 (534)
Q Consensus       359 ~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~  438 (534)
                      .+||++.+++.+++.++..+.. ...++.+++  + .+                 ..++++.++  .++.......+..+
T Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~-~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~  230 (399)
T PRK05122        174 WGGLAGLGLLIMLLALLGLLLA-RPRPAVPPV--K-GE-----------------RLPFRRVLG--RVWPYGMGLALASI  230 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-hcCCCCCCC--C-cc-----------------chhHHHHHH--HHHHHHHHHHHHHH
Confidence            9999998877665544332221 111111110  0 00                 011222222  22333333344455


Q ss_pred             HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +......+++.|+.+ .|+  ...+.......++.++++++.|++.||+++|+...
T Consensus       231 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~  283 (399)
T PRK05122        231 GFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAI  283 (399)
T ss_pred             HHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            566677788888876 465  34566677788888999999999999999887543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=1.5e-22  Score=210.88  Aligned_cols=267  Identities=16%  Similarity=0.160  Sum_probs=201.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcch-----hHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTT-----VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      ...++..++.........+++|.+.+++|.+..+     .|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            3444556666777778888999999999988654     48899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchH
Q 009469          285 ATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (534)
Q Consensus       285 ~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~  364 (534)
                      +.+++++.+  +++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.+++|.+++.+.+..+|++
T Consensus        97 ~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  173 (408)
T PRK09874         97 VMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP  173 (408)
T ss_pred             HHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            988888877  78899999999999865 467778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHH-HHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWAL-IISHFCHNWGTFIL  443 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~l~~~~~~~~~~~~  443 (534)
                      .|++.+++.++..++.+...++++++.++.+..+.               .+....+++++++.. .+..++........
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHM---------------REVVTSLKNPKLVLSLFVTTLIIQVATGSI  238 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccchhhhHH---------------HHHHHhCcCCchHHHHHHHHHHHHHHHHHH
Confidence            99998887776666655555544322111110000               112234566665543 33334444445556


Q ss_pred             HHHHHHHHHHhhCCChh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          444 LTWMPTYYNQVLKFNLT---ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~---~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+++.|..+..+....   ..+.+..+..++.+++.++.|++.||+++|+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILI  292 (408)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence            67778888775332221   2455566667888889999999999999987644

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.92  E-value=3.5e-23  Score=215.01  Aligned_cols=266  Identities=12%  Similarity=0.068  Sum_probs=200.5

Q ss_pred             HHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh
Q 009469          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA  292 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~  292 (534)
                      +...++..+.........+.+.++++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~   88 (393)
T PRK11195          9 MAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG   88 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH
Confidence            34455555555555666667788999999999999999999999999999999999999999999999999888877776


Q ss_pred             ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 009469          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (534)
Q Consensus       293 ~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~  372 (534)
                      .  +.   ++.|+++|++.+...|+..+++.|++|+++|++++|+......+|.++||.++|++.+.. |+..+.+.+..
T Consensus        89 ~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~  162 (393)
T PRK11195         89 I--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALI  162 (393)
T ss_pred             H--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            5  33   678999999999999999999999999999999999999999999999999999998853 77666665554


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (534)
Q Consensus       373 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~  452 (534)
                      .++..+. ....++.+.+.+..+.+.....        ......++.++++|.+....+..++...........+|.|++
T Consensus       163 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (393)
T PRK11195        163 YLLAALF-NLFIPRLGARRPGQSWNPIALL--------RDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAP  233 (393)
T ss_pred             HHHHHHH-HhcCCCCcccccccCCCHHHHH--------HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333332 2333333221111000000000        000112456777877665555554545555566667788888


Q ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       453 ~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +.+|.++.+.|++.....++.+++.++.+++.||.++++..
T Consensus       234 ~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~  274 (393)
T PRK11195        234 VALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVL  274 (393)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH
Confidence            88999999999999999999999999999999988877643

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=8.1e-23  Score=207.27  Aligned_cols=242  Identities=30%  Similarity=0.543  Sum_probs=218.2

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh
Q 009469          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~  291 (534)
                      +.+..+..........+..+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence            34455667778888888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHH
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~  371 (534)
                      .+  +++.+++.|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+.+..+|++.+++.++
T Consensus        84 ~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (352)
T cd06174          84 AS--SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI  161 (352)
T ss_pred             hc--cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            87  8899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (534)
Q Consensus       372 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~  451 (534)
                      +.++..++.....                                       |.++...+..++..........+.|.+.
T Consensus       162 ~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (352)
T cd06174         162 LGLLLALLLLFLL---------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYL  202 (352)
T ss_pred             HHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7777666554442                                       3567777778888888888999999999


Q ss_pred             HHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chH
Q 009469          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LSI  494 (534)
Q Consensus       452 ~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~-~~i  494 (534)
                      .+.+|.+..+.+.+.....++.+++.++.+++.||+++|+ ...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  246 (352)
T cd06174         203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLL  246 (352)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            9977999999999999999999999999999999999987 433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2e-23  Score=220.78  Aligned_cols=285  Identities=19%  Similarity=0.254  Sum_probs=237.4

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      .-|.+++..++..+........++.+.+.+.++++.+..+++|+.++......+..|+.+.+.||+|.|.+.++|.++.+
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence            34889999988888888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCh-HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          284 VATVLTPVAARIGL-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       284 i~~~l~~~~~~~~~-~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ++.++.++++  ++ ..++...++.|+|.|..+.+...++..|| +++|+.|.|+..++.++|.++-|.+..++.+.+||
T Consensus       123 ~g~~lssF~~--~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~  199 (509)
T KOG2504|consen  123 LGLLLSSFAT--SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW  199 (509)
T ss_pred             HHHHHHHHHh--hHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence            9999999999  55 45567889999999999999999999999 88999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChh--------------------hhHHH------------HhhhhC-CCccc
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPE--------------------LRAEE------------KRHILG-GSISK  409 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~--------------------~~~~~------------~~~~~~-~~~~~  409 (534)
                      |+.+++.+.+.+-.++......|..+...+.                    .....            ...... .....
T Consensus       200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (509)
T KOG2504|consen  200 RGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWR  279 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccc
Confidence            9999999998877777766666532222111                    00000            000000 00000


Q ss_pred             -ccccccc---HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          410 -EAVSVIP---WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD  485 (534)
Q Consensus       410 -~~~~~~~---~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~d  485 (534)
                       ...+...   ..++++++.++.+++...+...+++....++|.|..+ +|++..+++.+.++.++..++++++.|+++|
T Consensus       280 ~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD  358 (509)
T KOG2504|consen  280 NSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLAD  358 (509)
T ss_pred             ccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcC
Confidence             0111111   2578899999999999999999999999999999996 7999999999999999999999999999999


Q ss_pred             Hhhcccc
Q 009469          486 TLVSKGL  492 (534)
Q Consensus       486 r~g~r~~  492 (534)
                      +...++.
T Consensus       359 ~~~~~~~  365 (509)
T KOG2504|consen  359 KPGIRAL  365 (509)
T ss_pred             ccccchH
Confidence            9885543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=3.3e-23  Score=216.96  Aligned_cols=263  Identities=14%  Similarity=0.106  Sum_probs=203.3

Q ss_pred             HHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh---h
Q 009469          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---A  292 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~---~  292 (534)
                      .++..+......+.+|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.+.   .
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            3445555666777888888899999999999999999999999999999999999999999888887776655442   1


Q ss_pred             ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 009469          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL  372 (534)
Q Consensus       293 ~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~  372 (534)
                      ...+++.+++.|++.|++.+...++..+++.+++|+++|+++.++......+|..+||.+++.+.+..+|+|.|++.++.
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~  185 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG  185 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            22267888899999999988888888999999999999999999999999999999999999999989999999887776


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          373 GSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYN  452 (534)
Q Consensus       373 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~  452 (534)
                      .++..++.+. .++.+++.++... .           .......++.++++|.++...+..++... ......++|.|++
T Consensus       186 ~~~~~~~~~~-l~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~  251 (417)
T PRK10489        186 TFITLLPLLR-LPALPPPPQPREH-P-----------LRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALAD  251 (417)
T ss_pred             HHHHHHHHHh-CCCCCCCCccccc-c-----------hHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHH
Confidence            6655544433 3332221110000 0           00011235567778777666555444332 3556778899999


Q ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          453 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       453 ~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      +.+|.+....+++.+...++.+++.++.+++.||.++++.
T Consensus       252 ~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~  291 (417)
T PRK10489        252 EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL  291 (417)
T ss_pred             hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH
Confidence            8889999999999999999999999999999998665543

>PRK12382 putative transporter; Provisional

Probab=99.92  E-value=1.3e-22  Score=210.53  Aligned_cols=258  Identities=16%  Similarity=0.214  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469          211 LCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~  289 (534)
                      .+.+..++.........+.+|. +.+++|.+..++|++.+++.++..++++++|+++||+|||+++.++.++..++.+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (392)
T PRK12382         19 RIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAY   98 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            3334445555566667777775 578999999999999999999999999999999999999999999988777655432


Q ss_pred             h---hhc---cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          290 P---VAA---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       290 ~---~~~---~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      .   +.+   ..+++.+++.|+++|++.+...+...+++.+++|+++|++++++...+..+|.++||++++++.+.+||+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  178 (392)
T PRK12382         99 LLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFA  178 (392)
T ss_pred             HhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence            2   211   1267889999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      +.+.+..++.++.... ....++.+++++. +                   .+.++.++  .++...+..++...+....
T Consensus       179 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-------------------~~~~~~~~--~~~~~~~~~~l~~~~~~~~  235 (392)
T PRK12382        179 ALALTTMVLPLLAWAF-NGTVRKVPAHAGE-R-------------------PSLWSVVG--LIWKPGLGLALQGVGFAVI  235 (392)
T ss_pred             HHHHHHHHHHHHHHHH-HHhccCCCCCccc-C-------------------chHHHHHH--HHHHhHHHHHHHHHHHhHH
Confidence            8776554443322221 1111211110000 0                   01111211  1222222333334455566


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+.|.|+++ .+++.  .+.......++.++++++.|++.||+++|+...
T Consensus       236 ~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  283 (392)
T PRK12382        236 GTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAI  283 (392)
T ss_pred             HHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehH
Confidence            7788888877 46653  455666677788899999999999999988654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=3.1e-22  Score=214.65  Aligned_cols=291  Identities=15%  Similarity=0.147  Sum_probs=204.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhh-----CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF-----NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      +.++..+.++.++.+..+++...++...+.+..++     ..+..+.+++.+.+.++..++.+++|+++||+|||+++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            34567777788888899999999999888876643     3445677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccC----ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 009469          278 GVIWWSVATVLTPVAARI----GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS  353 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~~~----~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~  353 (534)
                      +.+++.++.++++++++.    +++.++++|++.|++.|...+....+++|++|+++|++++++.+....+|.++++.++
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888887621    1678999999999999999999999999999999999999999999999999999888


Q ss_pred             HHhhc-----------------------ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCC---Chhh-h-HHH-HhhhhC
Q 009469          354 PILIQ-----------------------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE---DPEL-R-AEE-KRHILG  404 (534)
Q Consensus       354 ~~l~~-----------------------~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~---~~~~-~-~~~-~~~~~~  404 (534)
                      ..+..                       ..+||+.+.+.++..++. .+..+..||+|+.   +.+. + ..+ ......
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            76532                       247999997666655543 3334555666542   1111 0 000 000000


Q ss_pred             -----CCcc------ccccccccHHHhhcc---hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHH--
Q 009469          405 -----GSIS------KEAVSVIPWKLILSK---APV----WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL--  464 (534)
Q Consensus       405 -----~~~~------~~~~~~~~~~~ll~~---~~~----~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~--  464 (534)
                           ...+      .++....++++++++   ++.    +...+..++..+.+++...|.|.++++ .|++...++.  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~  329 (502)
T TIGR00887       251 VKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNA  329 (502)
T ss_pred             cccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhH
Confidence                 0000      000011246666642   222    112222333444556667778998876 6886543221  


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          465 ----------FCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       465 ----------l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                                ...+..++.+++.++.++++||+|||++++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~  370 (502)
T TIGR00887       330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM  370 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence                      2333445667788899999999999986554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.92  E-value=3.9e-22  Score=207.61  Aligned_cols=254  Identities=13%  Similarity=0.105  Sum_probs=194.8

Q ss_pred             HHHHhhhhHHHHhHH-HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccC
Q 009469          217 LLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI  295 (534)
Q Consensus       217 ~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~  295 (534)
                      ++.....+...++++ ++.+++|++..++|++.+.+.++..+..+++|+++||+|||+++.++.++.+++.+++.+.+  
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--   97 (400)
T PRK11646         20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--
Confidence            333344444444544 46789999999999999999999999999999999999999999999999999999998887  


Q ss_pred             ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q 009469          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (534)
Q Consensus       296 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i  375 (534)
                      +++.+++.|++.|++.+...++..+++.+++|+++|++++|+......+|..+||++++++. .+||++.|++.+++.++
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~  176 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVL  176 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence            78889999999999998888899999999999999999999999999999999999999998 78999999988877666


Q ss_pred             HHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          376 WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL  455 (534)
Q Consensus       376 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~  455 (534)
                      ..++.....++.++. +.. .               .....++.++++++++...+..+...........++|.|+++. 
T Consensus       177 ~~i~~~~~~~~~~~~-~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-  238 (400)
T PRK11646        177 AAAFNAWLLPAYKLS-TVR-T---------------PVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI-  238 (400)
T ss_pred             HHHHHHHhCCccccc-ccc-h---------------hhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh-
Confidence            555444443332111 000 0               0012456678888887766665554444444566889999885 


Q ss_pred             CCChhhhHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Q 009469          456 KFNLTESGLFCVLPWLTMAVFANMGGWIAD-TLVSKG  491 (534)
Q Consensus       456 g~s~~~~g~l~~~~~~~~iig~~i~g~l~d-r~g~r~  491 (534)
                      +.++.+.+.+.+...++.+++....+++.| |++.++
T Consensus       239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~  275 (400)
T PRK11646        239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH  275 (400)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence            447778888887777766655555555555 454443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.91  E-value=1.9e-22  Score=208.69  Aligned_cols=263  Identities=10%  Similarity=0.017  Sum_probs=200.8

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHH-HHHHHH-HHH
Q 009469          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVI-WWSVAT-VLT  289 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~-~~~i~~-~l~  289 (534)
                      +.+.++..........+++|.+.+++|.+..++|++.+++.+...++++++|+++||+||+........ ...+.. ..+
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            334455666667788889999999999999999999999999999999999999999998543322111 111111 223


Q ss_pred             hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      ..++  +++.+++.|+++|.+.+...+...++..++  +++|++++|......++|.+++|++++.+.+.+|||+.|++.
T Consensus        89 ~~~~--~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        89 AGAH--NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             Hhhh--hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            3445  788999999999998888888888887654  578899999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      +++.++.. +.+...++.+++++. ++ +           +......++.++|+|++|.+.+..++...+......+.|.
T Consensus       165 ~~~~~~~~-~~~~~~~~~~~~~~~-~~-~-----------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       165 TAGLAFML-IGFLIKPTIPPKDAI-PE-D-----------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             HHHHHHHH-HHHHcCCCCCCCccc-cc-c-----------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65533322 222222221111110 00 0           0011124667899999999999999888888899999999


Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      |+++ .|.+..+.+++..+..++.+++.++.+++.||++.|+.+
T Consensus       231 ~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l  273 (382)
T TIGR00902       231 YWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLL  273 (382)
T ss_pred             HHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHH
Confidence            9987 799999999999998899999999999999999998743

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.91  E-value=2.1e-22  Score=207.86  Aligned_cols=262  Identities=20%  Similarity=0.237  Sum_probs=198.0

Q ss_pred             HHHHhhhhHHHHhHHHHHhhhC--CCcchhHHHHHH-----HHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469          217 LLCNMDRVNMSIAILPMSKEFN--WNSTTVGLIQSS-----FFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g--~s~~~~g~i~s~-----~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~  289 (534)
                      +..+++.+.++...+.+.+++.  .+..+.+++.+.     ..++..+++++.|+++||+|||+++.++.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3456777778887777766654  445556654443     333445688999999999999999999999999999999


Q ss_pred             hhhccCChH--------HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----
Q 009469          290 PVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI----  357 (534)
Q Consensus       290 ~~~~~~~~~--------~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~----  357 (534)
                      ++++  ++.        .+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.    
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhCC--ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9887  443        57889999999999999999999999999999999999999999999999998877654    


Q ss_pred             ----cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchh--HHHHHH
Q 009469          358 ----QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP--VWALII  431 (534)
Q Consensus       358 ----~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~l  431 (534)
                          +.++||+.|++.+++.++...+. ...++.++..+   .+++          ++....++++.+++++  ++...+
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  226 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGLYLR-RNLEETPVFEK---AQEK----------HKKKRGPIRETLTKHRKPFLLGLG  226 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHH-HhcCCChhHHH---HHhc----------cccccCCHHHHHHhchHHHHHHHH
Confidence                35789999987766555433322 22222211100   0000          0011234555666655  777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          432 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       432 ~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..++.....+....++|.|+++.+|.+..+.+.+.....++.+++.++.|++.||+++|+...
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  289 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            777777777888889999998878999999999999999999999999999999999987543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.91  E-value=3.6e-22  Score=206.69  Aligned_cols=256  Identities=11%  Similarity=0.110  Sum_probs=195.1

Q ss_pred             HHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCc----hHHHHHHHHHHHHHHHHhh
Q 009469          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK----PVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr----~~l~~g~~~~~i~~~l~~~  291 (534)
                      ++........+.+++|.+.+++|.+..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~   90 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG   90 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence            344445567788888999999999999999999999999999999999999999994    2332222221  1122222


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHH
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~  371 (534)
                      .+  +++.+++.|++.|++.+...+...+++.++  .++|+++++.......+|.++||++++++.+++|||..|++.++
T Consensus        91 ~~--~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         91 AH--SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             cc--cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            34  788899999999999888888888887776  45688889999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (534)
Q Consensus       372 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~  451 (534)
                      ..++..+.. ...++.+++.++   ++.          .......+++++++|.+|.+.+..++..........++|.|+
T Consensus       167 ~~~~~~~~~-~~~~~~~~~~~~---~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  232 (382)
T PRK11128        167 GVASMLLGQ-LLRPTIMPQGES---RQQ----------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW  232 (382)
T ss_pred             HHHHHHHHH-HccCCCCCcccc---ccc----------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            544443332 222322111100   000          000123578899999999988888877777777888889999


Q ss_pred             HHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       452 ~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      ++ .|++..+.+.+.....++.++..++.+++.||+++++.
T Consensus       233 ~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  272 (382)
T PRK11128        233 QA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL  272 (382)
T ss_pred             HH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            77 79999999999998889999999999999999999875

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=3.2e-22  Score=207.89  Aligned_cols=260  Identities=12%  Similarity=0.124  Sum_probs=200.8

Q ss_pred             HHHHHHhhhhHHHHhHH-HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      ..++.........+.++ ++.+++|++..++|++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++.+
T Consensus        15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~   94 (395)
T PRK10054         15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN   94 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence            44445555555555555 46678999999999999999999999999999999999999999999999999988888887


Q ss_pred             cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 009469          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG  373 (534)
Q Consensus       294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~  373 (534)
                        +++.+++++++.|.+.+...+...+++.|.+|+++|++++++.....++|.++||++++++.. .+|++.|++.+++.
T Consensus        95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~  171 (395)
T PRK10054         95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICS  171 (395)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHH
Confidence              788888888888887777788889999999999999999999999999999999999999875 79999999888777


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          374 SIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ  453 (534)
Q Consensus       374 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~  453 (534)
                      ++..++.....++.++++++.+. +               ....+..+++|.++.+.+..++..+.......+.+.|...
T Consensus       172 ~i~~i~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  235 (395)
T PRK10054        172 AFPLVFIQIWVQRSEKAIATETG-S---------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMV  235 (395)
T ss_pred             HHHHHHHHHHHhccccccccchh-h---------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            66655444433332221111000 0               0113557888999888888777777766666677777654


Q ss_pred             h--hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          454 V--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       454 ~--~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      .  .+.+....+.+.....+..+......|++.||.++|+.+
T Consensus       236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l  277 (395)
T PRK10054        236 VADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLM  277 (395)
T ss_pred             hcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHH
Confidence            3  345556667777777777777778889999999888643

>TIGR00901 2A0125 AmpG-related permease

Probab=99.91  E-value=7.2e-22  Score=202.26  Aligned_cols=256  Identities=13%  Similarity=0.068  Sum_probs=196.6

Q ss_pred             hHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----CCchH-HHHHHHHHHHHHHHHhhhcc-CC
Q 009469          224 VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-----GGKPV-LGFGVIWWSVATVLTPVAAR-IG  296 (534)
Q Consensus       224 ~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-----Grr~~-l~~g~~~~~i~~~l~~~~~~-~~  296 (534)
                      ..+++..|.+.+++|+|.+++|+.... .+...+ .+++|+++||+     |||+. ++.+.++.++..+.+++... .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            456678899999999999999999755 455444 89999999998     89886 56777777777666666631 24


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC--------chHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG--------WPSVFYS  368 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g--------w~~~f~i  368 (534)
                      .+.+.+..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+....|        ||+.|++
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i  162 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW  162 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence            55667777788888888889999999999999999999999999999999999999999998888        9999998


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchh---HHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP---VWALIISHFCHNWGTFILLT  445 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~l~~~~~~~~~~~~~~  445 (534)
                      .+++.++..++.++..+++.+..+.. +++...           ....++.+++++.   ++.+.+..++...+.+....
T Consensus       163 ~ai~~l~~~~~~~~~~~e~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (356)
T TIGR00901       163 TALLILPGLLVTLFLAKEPQEDASVP-KPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATV  230 (356)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccc-hhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88877665554444444432211111 000000           1124566777765   77777777777788888889


Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhcccchH
Q 009469          446 WMPTYYNQVLKFNLTESGLFCVLPW-LTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       446 ~lp~~~~~~~g~s~~~~g~l~~~~~-~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ++|.|+++ +|++..+.+.+..... ++.+++.+++|++.||+|+|+.+.
T Consensus       231 ~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~  279 (356)
T TIGR00901       231 LTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALL  279 (356)
T ss_pred             HHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999998 8999999988877665 577899999999999999887544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.91  E-value=1.2e-21  Score=203.48  Aligned_cols=257  Identities=17%  Similarity=0.108  Sum_probs=180.9

Q ss_pred             HHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhCCchHH-HHHHHHHHHHHHHHhhh
Q 009469          216 FLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVL-GFGVIWWSVATVLTPVA  292 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l-~~g~~~~~i~~~l~~~~  292 (534)
                      .++.......+.+.++. +.+++|++..++|++.+...+ +..++++++++ .||+|+|+.+ ..+.++.+++.++++++
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~  102 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            44555555556666666 578899999999999876655 55556655555 9999999875 45566666777777777


Q ss_pred             ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHH
Q 009469          293 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER--SRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG  370 (534)
Q Consensus       293 ~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r--g~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~  370 (534)
                      +  +++.+++.+.+.|...+...+...+++.++.++++|  +...++...+.++|.++||++++++.+++|||+.|++.+
T Consensus       103 ~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~  180 (393)
T PRK15011        103 R--NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA  180 (393)
T ss_pred             h--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence            7  677766665555544456678888888888766655  344578888999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          371 SLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK-APVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       371 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      ++.++..++.+...|+.+++++.... +          .+     .   ..++ +..+......++.......+..++|.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  241 (393)
T PRK15011        181 VAFIVCGVMVWLFLPSMRKELPLATG-T----------LE-----A---PRRNRRDTLLLFVICTLMWGTNSLYIINMPL  241 (393)
T ss_pred             HHHHHHHHHHHhhcCccCCCCccccc-c----------cc-----c---cccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777766666555554322211000 0          00     0   0112 22333333334444455556678999


Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      |+++.+|++..+.+.+.....++.+++.++.|+++||+++|+...
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~  286 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR  286 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            998888999999998888877888899999999999999987543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.90  E-value=3.4e-21  Score=205.55  Aligned_cols=269  Identities=16%  Similarity=0.169  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----CCchH-HHHHHHHHHH
Q 009469          211 LCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-----GGKPV-LGFGVIWWSV  284 (534)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-----Grr~~-l~~g~~~~~i  284 (534)
                      ..++..+..+.........+|.+.++.|.+..+++.. +.....+ ++.+++|+++||+     |||+. ++++.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            3444455666677788888999999999999999986 3333343 6899999999999     99885 6677777777


Q ss_pred             HHHHHhhhc-cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCc
Q 009469          285 ATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGW  362 (534)
Q Consensus       285 ~~~l~~~~~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-~~gw  362 (534)
                      +.+.+++.. ..+++.+.+.+++.|++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..||
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            777776653 23577888899999999999999999999999999999999999999999999999999999998 5799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~  442 (534)
                      |+.|++.+++.++..+..+. .+++++..+..+. .           +.....+++++++++..|...+..++...+...
T Consensus       174 r~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~-~-----------~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~  240 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLL-APEPTDTIPVPKT-L-----------EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAF  240 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCccccccccc-h-----------hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence            99999988877666554443 3433221110000 0           000112466677777777776666666666667


Q ss_pred             HHHHHHHHHHHhhCCChhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          443 LLTWMPTYYNQVLKFNLTESGLFCV-LPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       443 ~~~~lp~~~~~~~g~s~~~~g~l~~-~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ...+.+.|+.+.+|++..+.+.+.. ...++.+++.+++|+++||+++|+.+.
T Consensus       241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~  293 (491)
T PRK11010        241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM  293 (491)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            7778888887778999999999874 556899999999999999999887433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.90  E-value=7.3e-21  Score=198.29  Aligned_cols=266  Identities=13%  Similarity=0.049  Sum_probs=203.2

Q ss_pred             HHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-----CCch-HHHHHHHHHHHHH
Q 009469          213 FSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-----GGKP-VLGFGVIWWSVAT  286 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-----Grr~-~l~~g~~~~~i~~  286 (534)
                      +..++..+.........+|.+.++.|++.+++|++..+...  .+..+++|+++||+     |||+ +++++.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            44566777778888889999999999999999999777665  58999999999999     8775 7888888888888


Q ss_pred             HHHhhhc-cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchH
Q 009469          287 VLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPS  364 (534)
Q Consensus       287 ~l~~~~~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-~gw~~  364 (534)
                      +++++.. ..+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||.
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            7777763 224677777878888888888899999999999999999999999999999999999999999886 59999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  444 (534)
                      .|++.+++.++..+.. ...++++.++++.+. ..+           .....+++++++|.++.+.+..++.........
T Consensus       163 ~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~~~-~~~-----------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~  229 (402)
T PRK11902        163 TYLLMAGLMLAGALTT-LWAPEPEVPARPPRS-LGE-----------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAG  229 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HhcCCCcccccccch-hHH-----------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHH
Confidence            9999888776554433 333333221111100 000           012346778899988887777666665544444


Q ss_pred             HHHHHHHHHhhCCChhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhcccch
Q 009469          445 TWMPTYYNQVLKFNLTESGLFCVLPW-LTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       445 ~~lp~~~~~~~g~s~~~~g~l~~~~~-~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      .+.+.++.+.+|+++.+.+++..... ++.+++.++++++.||+++|+..
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l  279 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL  279 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45555666668999999999876654 56889999999999999988753

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=2.5e-22  Score=215.63  Aligned_cols=257  Identities=19%  Similarity=0.154  Sum_probs=191.7

Q ss_pred             HhHHHHHhhhCCC---cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          228 IAILPMSKEFNWN---STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       228 ~~~~~~~~~~g~s---~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      +..+.+.++++++   ..+.+++.+++.++..++.+++|+++||+|||++++++.++.+++.+++++++  +++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            4667889999999   89999999999999999999999999999999999999999999999999988  899999999


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      ++.|++.+...+...+++.|++|+++|+++.++...+..+|.+++|.++..+.+   ||+.|++.++..++..+.. +..
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999999877654   9999999888777666555 444


Q ss_pred             cCCCCC----ChhhhHHH---H-hhhhC------------CCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 009469          385 YSSPKE----DPELRAEE---K-RHILG------------GSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (534)
Q Consensus       385 ~~~~~~----~~~~~~~~---~-~~~~~------------~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  444 (534)
                      ++.++.    .+..+..+   + .....            ............+++++++|.++...+..++..+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            554321    00000000   0 00000            0000001112467788999888777766655554444333


Q ss_pred             HHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       445 ~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +.++.+... ++.+..   .......+..+++.++.+++.||+|||+.+.
T Consensus       344 ~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~  389 (505)
T TIGR00898       344 YGLVLDLGN-LGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMA  389 (505)
T ss_pred             HHHhccccc-cCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            333444433 455432   3334556777889999999999999997544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=7.4e-21  Score=187.99  Aligned_cols=274  Identities=17%  Similarity=0.211  Sum_probs=229.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      ...++.+...+++.++......+.+|.+.+.|+++..+.+++...+..++.+++++.|++.+|+|+|+.+++|..+++++
T Consensus        12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34556666677777888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh-hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-----
Q 009469          286 TVLTPV-AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-----  359 (534)
Q Consensus       286 ~~l~~~-~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-----  359 (534)
                      +.++.- +...++..++++-++.|.|.+...++++.+++...++++-...+.+.+..+++|..+||++++.++.+     
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            988853 33347888999999999999999999999999999998899999999999999999999999998872     


Q ss_pred             --------------cCchHHHHHHHHHHHHHHHHHHHhh-cCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcch
Q 009469          360 --------------FGWPSVFYSFGSLGSIWFALWLKKA-YSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKA  424 (534)
Q Consensus       360 --------------~gw~~~f~i~~~~~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  424 (534)
                                    -.|+++|.+.+....++.+.....+ |+.++..+...+.               ......+++++|
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~---------------~~~~~~~l~~~~  236 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS---------------GSAGLSSLFQNK  236 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc---------------ccchHHHHHhCh
Confidence                          1377788777766666555544433 2111111111000               001356689999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          425 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .++...++.|++.........|++.|+.+..|++..+++...+..+++.++||+++.++..|+...+.+.
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~La  306 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLA  306 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999999999999999999999999999988999999999999999999999999999999998887543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.89  E-value=3e-21  Score=227.19  Aligned_cols=264  Identities=15%  Similarity=0.162  Sum_probs=196.0

Q ss_pred             hHHHHhHHHHHhhhCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc-cCChHHH
Q 009469          224 VNMSIAILPMSKEFNWNS--TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-RIGLPFL  300 (534)
Q Consensus       224 ~~~~~~~~~~~~~~g~s~--~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~-~~~~~~l  300 (534)
                      .......+.+..+++.+.  ...+++.+++.++++++++++|+++||+|||++++++.++.+++.+++.++. ..+++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l  106 (1146)
T PRK08633         27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA  106 (1146)
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            334444555556666554  4478999999999999999999999999999999998877666655544321 1168899


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--------c-CchHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------F-GWPSVFYSFGS  371 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~--------~-gw~~~f~i~~~  371 (534)
                      +++|++.|++.+...++..+++.|++|+++|++++|+...+..+|.++|+++++++.+.        + +|.+.+.+.++
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  186 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLL  186 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999876        2 34444444443


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (534)
Q Consensus       372 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~  451 (534)
                      ..++..++..+..++.+...........       ..........++.+++++.++...+..++..+.......++|.|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (1146)
T PRK08633        187 AVAVLGLIFAYRLPKVPAAAPEVFDKKK-------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYA  259 (1146)
T ss_pred             HHHHHHHHHHhcCcCCCCCCcccccccc-------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3333333333333433322111100000       000001123466778888888888777777777777888999999


Q ss_pred             HHhhCCChh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          452 NQVLKFNLT-ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       452 ~~~~g~s~~-~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .+.+|++.. ..+++.+...++.+++.++.+++.||+++++.+.
T Consensus       260 ~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~  303 (1146)
T PRK08633        260 KEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVP  303 (1146)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchh
Confidence            998999998 9999999999999999999999999999887544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.89  E-value=3.7e-21  Score=226.05  Aligned_cols=269  Identities=14%  Similarity=0.151  Sum_probs=195.6

Q ss_pred             HHHHHHHHhhhhHHHHhHH-HHHhhhCCCc-chhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHH---HHHHHHHHHH
Q 009469          213 FSAFLLCNMDRVNMSIAIL-PMSKEFNWNS-TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF---GVIWWSVATV  287 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~-~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~---g~~~~~i~~~  287 (534)
                      ++..+..++....+..... .+..+.+.+. ..+++..+++.++++++++++|+++||+|||+++..   +.++.++..+
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~  100 (1140)
T PRK06814         21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAI  100 (1140)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            3334443444333333332 2333333332 457888999999999999999999999999997643   2222222222


Q ss_pred             HHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHH
Q 009469          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (534)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~  367 (534)
                      +.....  +++.++++|+++|++.+...++..+++.+++|+++|++++|+.+++..+|.++||++++++....+|++.|+
T Consensus       101 ~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        101 YGFHLN--SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             HHHHHh--hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            222334  789999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009469          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWM  447 (534)
Q Consensus       368 i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~l  447 (534)
                      +.+++.++.+++. ...++.+...+........         .......++.+.+++.+|...+..++.++....+..++
T Consensus       179 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (1140)
T PRK06814        179 LLMGIAVLGWLAS-LFIPKTGNAAPDLKIDRNI---------IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL  248 (1140)
T ss_pred             HHHHHHHHHHHHH-hhCCCCCCCCCCCeeccch---------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444433333 3333322211111000000         00011246778889999999988888888888888999


Q ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          448 PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       448 p~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      |.|+++.+|.+....+++.+...++.+++.++.|++.++..+++..
T Consensus       249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~  294 (1140)
T PRK06814        249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV  294 (1140)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee
Confidence            9999998999999999999999999999999999999887766543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.88  E-value=2.5e-20  Score=193.87  Aligned_cols=272  Identities=13%  Similarity=0.047  Sum_probs=192.8

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh
Q 009469          212 CFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP  290 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~  290 (534)
                      +....++.......+.+.+|.+ .+++|.++.++|++.+++.++..++++++|+++||+|||+.++.+.+..+++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   86 (396)
T TIGR00882         7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFF   86 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666677777665 567899999999999999999999999999999999999999887766655443321


Q ss_pred             ---hhc---cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchH
Q 009469          291 ---VAA---RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS  364 (534)
Q Consensus       291 ---~~~---~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~  364 (534)
                         +.+   ...+..+++.+++.|++.+...+....+..+..  ++++..+|......++|.++||++++.+.+ .+|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~  163 (396)
T TIGR00882        87 IYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQI  163 (396)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchH
Confidence               111   001334566788888888877777777776653  344567788888889999999999998865 59999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  444 (534)
                      .|++.+++.++..++.+...++.+++ +..  .+ .  ..  .+.+..+..+.++++++|.++.+.+..++....+....
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~--~~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  235 (396)
T TIGR00882       164 VFWLGSGFALILMLLLMFAKPKAPSS-ATV--AN-A--LG--ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFD  235 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchh-hhh--hc-c--cc--cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            99988887777665554433332211 100  00 0  00  00111122356778999998887777766666666666


Q ss_pred             HHHHHHHHHhh---CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          445 TWMPTYYNQVL---KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       445 ~~lp~~~~~~~---g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .+.+.|+.+.+   +.+....+.+.+...+...++.+..+++.||+++|+.+.
T Consensus       236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~  288 (396)
T TIGR00882       236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALL  288 (396)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            77888887754   445566788888888889999999999999999998543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.88  E-value=3e-20  Score=189.82  Aligned_cols=300  Identities=13%  Similarity=0.088  Sum_probs=215.2

Q ss_pred             HhhhhHHHHhHHHHHhhhCCCcch-hHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChH
Q 009469          220 NMDRVNMSIAILPMSKEFNWNSTT-VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (534)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~g~s~~~-~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~  298 (534)
                      --.....+.+.|++.+++|++..+ .|.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..+++++++  ++.
T Consensus        39 ~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~  116 (511)
T TIGR00806        39 AQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVW  116 (511)
T ss_pred             HHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            345677888899999999999999 99999999999999999999999999999999999999999999999998  799


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH---HHHHHH
Q 009469          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF---GSLGSI  375 (534)
Q Consensus       299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~---~~~~~i  375 (534)
                      .+.+.|++.|++.|... +...++..|+|+++|+++.|++.++..+|.+++++++++ +..+|||+-+.+.   .....+
T Consensus       117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~  194 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTF  194 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHH
Confidence            99999999999999998 999999999999999999999999999999999999999 5578999754432   222222


Q ss_pred             HHHHHHHhhcCCCCCChhhhH--------HHHhhhhCCC---cc--ccc-------cccccHHHhhcchhHHHHHHHHHH
Q 009469          376 WFALWLKKAYSSPKEDPELRA--------EEKRHILGGS---IS--KEA-------VSVIPWKLILSKAPVWALIISHFC  435 (534)
Q Consensus       376 ~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~--~~~-------~~~~~~~~ll~~~~~~~~~l~~~~  435 (534)
                      .+++.++ .|..++..-..+.        .+........   ..  .+.       .-...++...+++.++...+...+
T Consensus       195 a~~~a~~-LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~  273 (511)
T TIGR00806       195 SVFLALF-LKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVF  273 (511)
T ss_pred             HHHHHHh-CCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHH
Confidence            3333333 3322221000000        0000000000   00  000       011234555778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 009469          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ  515 (534)
Q Consensus       436 ~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~  515 (534)
                      ...+++.+.+|......+..+-...-.|..-++..+.+.+..+..|++-.++.+..       .+.+.+..++.+..++.
T Consensus       274 a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~-------~l~l~v~s~~~~gll~~  346 (511)
T TIGR00806       274 NSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS-------KLLIAVVSAIQAGLVFW  346 (511)
T ss_pred             HhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH-------HHHHHHHHHHHHHHhhh
Confidence            88888888888877776653322224566677777778888888888744432211       13555555555666666


Q ss_pred             hccccchhHHHHhhhc
Q 009469          516 LSHVRTPAMAVLCMAC  531 (534)
Q Consensus       516 ~~~~~~~~~~~~~~~~  531 (534)
                      .....+.++..+..++
T Consensus       347 m~~t~~Iw~~Y~~yvl  362 (511)
T TIGR00806       347 MSQSHDIWVLYVTYVL  362 (511)
T ss_pred             hhcccchHHHHHHHHH
Confidence            7777777766555443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.88  E-value=4.3e-20  Score=195.88  Aligned_cols=271  Identities=15%  Similarity=0.187  Sum_probs=199.9

Q ss_pred             HHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChH
Q 009469          219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (534)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~  298 (534)
                      ..+.....+..++.+..++|- .....|+.+.+.++..+..++.|+++|.+|||++++.+.++..+|.++++.++  |..
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--~~~  132 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--NMN  132 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--cHH
Confidence            344455556677889999985 47788999999999999999999999999999999999999999999999999  889


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 009469          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i  378 (534)
                      .++++..+.|+|.|... .....++|..|.|.|+.+.++......+...++|.++..+..+.+|||.|++.+++..+.++
T Consensus       133 ~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  133 TFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            99999999999977665 45666899999999998888877766666668888888887778999999999888776665


Q ss_pred             HHHHhhcCCCCCC--h-hhhHHH-Hhhh--h------------------CCCc--------------------------c
Q 009469          379 LWLKKAYSSPKED--P-ELRAEE-KRHI--L------------------GGSI--------------------------S  408 (534)
Q Consensus       379 ~~~~~~~~~~~~~--~-~~~~~~-~~~~--~------------------~~~~--------------------------~  408 (534)
                      +.+++.++++++.  . +....+ -.+.  .                  .+..                          +
T Consensus       212 l~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE  291 (599)
T PF06609_consen  212 LIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWE  291 (599)
T ss_pred             HHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence            5444433222111  1 111111 1000  0                  0110                          0


Q ss_pred             c--c-ccccccHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---hhHHHHHHHHHHHHHHHHHHH
Q 009469          409 K--E-AVSVIPWKLILSK-APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT---ESGLFCVLPWLTMAVFANMGG  481 (534)
Q Consensus       409 ~--~-~~~~~~~~~ll~~-~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~---~~g~l~~~~~~~~iig~~i~g  481 (534)
                      .  . +.+..|. .++++ |.+....+..++....++....+.|......++.+..   ..+++......+..++.++.|
T Consensus       292 ~~~~~~~Pl~P~-~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g  370 (599)
T PF06609_consen  292 WFGAPKDPLFPH-RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILG  370 (599)
T ss_pred             hhccCCCCcCCH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHH
Confidence            0  0 1122333 46776 5566666777777777788888889888887776653   567788888888899999999


Q ss_pred             HHHHHhhcccchH
Q 009469          482 WIADTLVSKGLSI  494 (534)
Q Consensus       482 ~l~dr~g~r~~~i  494 (534)
                      .+..++++-|..+
T Consensus       371 ~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  371 LLFSKIRHIKWQL  383 (599)
T ss_pred             HHHHHccchhHHH
Confidence            9999988777543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3e-22  Score=196.33  Aligned_cols=240  Identities=20%  Similarity=0.163  Sum_probs=211.0

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccc
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~  313 (534)
                      .++.+-+.+++|++++.+.+...+..++.|.+.||+|+|..+++|.+++....+++++..  ++++++++|.++|+|.++
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~  175 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAF  175 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHH
Confidence            344567889999999999999999999999999999999999999999999999999999  899999999999999999


Q ss_pred             hhhHHHHHHhhhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCCh
Q 009469          314 AMPAMNNMLSKWIPVS-ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP  392 (534)
Q Consensus       314 ~~~~~~~~i~~~~~~~-~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~  392 (534)
                      ..++..++++|.||++ +|++++|+...+.++|..+||+++|.+.+..|.+..|.+++++.++-..+.++..+....+.+
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            9999999999999876 479999999999999999999999999999999999999999999888887776654333221


Q ss_pred             hhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHH
Q 009469          393 ELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT  472 (534)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~  472 (534)
                      ...                 +..+++.++++|.++.........+.+.......++.++.+.+..+..+.|+.+....+.
T Consensus       256 ~~~-----------------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~  318 (464)
T KOG3764|consen  256 STE-----------------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS  318 (464)
T ss_pred             ccc-----------------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence            110                 113567789999999988888888888888888899999998886666999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccc
Q 009469          473 MAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       473 ~iig~~i~g~l~dr~g~r~~  492 (534)
                      ..++..+.|.+.||++..++
T Consensus       319 y~ig~~lfg~la~k~~~~~w  338 (464)
T KOG3764|consen  319 YAIGTNLFGKLADKYPHLRW  338 (464)
T ss_pred             hhccCchHHHHHHhcCchhH
Confidence            99999999999999995554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.6e-19  Score=176.06  Aligned_cols=265  Identities=13%  Similarity=0.190  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      |..+....+..+.---..+.+++.++.+.+++|+|.+..|++.++..+...+.+++..++..|+|.++.+.+++++.+++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44444444444444456677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-CchH
Q 009469          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPS  364 (534)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~-gw~~  364 (534)
                      .++-...   +.+.++.+-.+.|.|.+......++++-+.| +++-+..+|+|.....+|..+++.+...+.++. |||.
T Consensus        91 ~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPslIK~~F-pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          91 ILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPSLIKRDF-PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhc-ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            9887765   3667888899999999999999999999999 667899999999999999999999999988887 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 009469          365 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL  444 (534)
Q Consensus       365 ~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  444 (534)
                      .+.+.+.++++.+++++....+.........                  ..+-..++++|..|.+.+.+.++.+.+|...
T Consensus       167 aL~~WAl~allAl~~WlPq~~r~~~~~~~~~------------------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~  228 (395)
T COG2807         167 ALGFWALLALLALLIWLPQALREQAASIATK------------------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVI  228 (395)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccccc------------------cccccccccCchhHHHHHHHHhhHHHHHHHH
Confidence            9999999999888887765322110000000                  0112237899999999999999999999999


Q ss_pred             HHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          445 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       445 ~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      .|+|.++.| .|+|+.++|.+.++..+..++..+....+.+|...++..
T Consensus       229 ~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~  276 (395)
T COG2807         229 GWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL  276 (395)
T ss_pred             HHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            999999999 599999999999999999999999999999987666643

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=8.2e-20  Score=194.22  Aligned_cols=300  Identities=18%  Similarity=0.193  Sum_probs=225.3

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh
Q 009469          212 CFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~  291 (534)
                      .+.+.+++.++..+.....+-+..+..-|+..++++..+..+...+.++++|.++||++||++++.+.++.++..++.++
T Consensus        15 lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~   94 (524)
T PF05977_consen   15 LWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAV   94 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            44555666667777777777777777889999999999999999999999999999999999999998877665544433


Q ss_pred             ---hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 009469          292 ---AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (534)
Q Consensus       292 ---~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i  368 (534)
                         ....+.+.+++.-++.|++.+...|+..+++.+..|+++...++++.+...++..++||.++|.++..+|-.++|.+
T Consensus        95 l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i  174 (524)
T PF05977_consen   95 LAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI  174 (524)
T ss_pred             HHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence               23346788999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      .++..++...+.....++.+ +.+...+.....           -...++.+.++|.+....+..++..+....+...+|
T Consensus       175 nalsfl~~i~~l~~~~~~~~-~~~~~~e~~~~~-----------l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlP  242 (524)
T PF05977_consen  175 NALSFLISILALLRWKPPPP-PSSLPRERFFSA-----------LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLP  242 (524)
T ss_pred             HHHHHHHHHHHHHHcccccc-ccccchhhhhhh-----------HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhh
Confidence            87766655444333332221 111111110000           112456667777777666666666666566667789


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHh
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC  528 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  528 (534)
                      .+.++.+|.++...|++.+..++|+++|.++.+++.+|++++++.         .++.++.++.++.++...+.+..++.
T Consensus       243 l~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv---------~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  243 LFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV---------LLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh---------HHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            999999999999999999999999999999999999998877632         23333444444455555555555544


Q ss_pred             hhcc
Q 009469          529 MACS  532 (534)
Q Consensus       529 ~~~~  532 (534)
                      +++.
T Consensus       314 l~l~  317 (524)
T PF05977_consen  314 LFLA  317 (524)
T ss_pred             HHHH
Confidence            4443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.87  E-value=4.7e-20  Score=193.32  Aligned_cols=268  Identities=15%  Similarity=0.057  Sum_probs=175.4

Q ss_pred             HHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh---h
Q 009469          216 FLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---V  291 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~---~  291 (534)
                      .++.......+.+.++. +.+++|+++.++|++.+++.++..++++++|+++||+|||++++++..+.+++.....   .
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   98 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555 4566999999999999999999999999999999999999999887666554433221   1


Q ss_pred             hcc---CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 009469          292 AAR---IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (534)
Q Consensus       292 ~~~---~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i  368 (534)
                      ...   ..+...++++++.|.+.....+....+..+ . .++++..+|.......+|..++|++++.+.+ .+|++.|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~  175 (420)
T PRK09528         99 APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWL  175 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHH
Confidence            110   001112233444444333333333333322 2 3567888899999999999999999999876 589999998


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      .+++.++..++.+...++++++.... +++.       .+.+.......+..+++|.+|.+.+..++....+.....++|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~  247 (420)
T PRK09528        176 GSGSALILLVLLFFAKPDAPSTAKVA-NALG-------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFP  247 (420)
T ss_pred             HHHHHHHHHHHHhcccccccchhhhc-cchh-------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHH
Confidence            88777666655554443332211100 0000       001111223455678888887776666555555555556677


Q ss_pred             HHHHHhh---CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          449 TYYNQVL---KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       449 ~~~~~~~---g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .|+.+.+   +.+..+.+.+.++..++.+++.++.|++.||+++|+...
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~  296 (420)
T PRK09528        248 NFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALL  296 (420)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH
Confidence            7776643   456667888888888999999999999999999998543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.86  E-value=3.2e-19  Score=189.52  Aligned_cols=279  Identities=12%  Similarity=0.073  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHH-Hhh--hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHHHH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPM-SKE--FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~i~  285 (534)
                      ..+++..++..+..+.+.+.++.+ .++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++++++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            334445556666666666666665 445  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCc---chhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE---RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~---rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      .+++++++  +++.+++.+++.|+|.|...+...+++++++|+++   |+.++++++.+.++|.++||++++++.+++||
T Consensus        93 ~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924        93 HFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             HHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            99998877  67788889999999999999999999999998764   88899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC---CCCCChhhhHHHHhhh-------------------hCCCccc-----------
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYS---SPKEDPELRAEEKRHI-------------------LGGSISK-----------  409 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~---~~~~~~~~~~~~~~~~-------------------~~~~~~~-----------  409 (534)
                      ++.|++.++..++..+.++...+.   .+++......++....                   .......           
T Consensus       171 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (475)
T TIGR00924       171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAV  250 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999998776554443333332221   1111110000000000                   0000000           


Q ss_pred             -------cccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh----hHHHHHHHHHHHHHHHH
Q 009469          410 -------EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE----SGLFCVLPWLTMAVFAN  478 (534)
Q Consensus       410 -------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~----~g~l~~~~~~~~iig~~  478 (534)
                             ...+.....+-.|...+..+.+..++.+..+....+.++.+..+..+.+...    .+++.++..+..++..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p  330 (475)
T TIGR00924       251 IIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSP  330 (475)
T ss_pred             HHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHH
Confidence                   0000000011112223445555555666666677777888887754443222    66788888888888887


Q ss_pred             HHHHHHHHhhcc
Q 009469          479 MGGWIADTLVSK  490 (534)
Q Consensus       479 i~g~l~dr~g~r  490 (534)
                      +..++..++.+|
T Consensus       331 ~~~~~~~~l~~~  342 (475)
T TIGR00924       331 VLAMIWTRLGRK  342 (475)
T ss_pred             HHHHHHHHHHhC
Confidence            766655566554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=2.3e-19  Score=192.84  Aligned_cols=296  Identities=18%  Similarity=0.173  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHhh--hhHHHHhHHHHHhhh-----CCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHH
Q 009469          210 LLCFSAFLLCNMD--RVNMSIAILPMSKEF-----NWNS--TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVI  280 (534)
Q Consensus       210 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----g~s~--~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~  280 (534)
                      +...+..+..+.+  ....++....+.+..     ..+.  .+.+|+.++..++..++++++|+++|++|||+.++++.+
T Consensus        48 ~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~  127 (513)
T KOG0254|consen   48 LVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVV  127 (513)
T ss_pred             HHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3333344444443  344455555555432     1122  345899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 009469          281 WWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-  359 (534)
Q Consensus       281 ~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-  359 (534)
                      ++.++.++++++.  ++++++++|++.|+|.|+...+.+.+++|..|++.||...+..+....+|..++..++....+. 
T Consensus       128 ~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~  205 (513)
T KOG0254|consen  128 LFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVY  205 (513)
T ss_pred             HHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence            9999999999999  8999999999999999999999999999999999999999999999999999995554444322 


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChh-hhHHHHh---hhhCC-Ccccc-----------------ccccccH
Q 009469          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE-LRAEEKR---HILGG-SISKE-----------------AVSVIPW  417 (534)
Q Consensus       360 ~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~---~~~~~-~~~~~-----------------~~~~~~~  417 (534)
                      .+||..+.+..+.+++..+. ..+.|+.|+.--+ .+..+.+   ....+ .....                 ......+
T Consensus       206 ~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (513)
T KOG0254|consen  206 AGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASW  284 (513)
T ss_pred             ccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccH
Confidence            48998888888887777777 6666655532111 0010000   00000 00000                 0000113


Q ss_pred             HHhhc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          418 KLILS----KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       418 ~~ll~----~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +++++    ++.++...+..+.+..+.....+|.+.+++.. |.+... .....+..+..+++.+++.++.||+|||+++
T Consensus       285 ~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll  362 (513)
T KOG0254|consen  285 GELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLL  362 (513)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33332    22334455555555666677788888888874 665443 5555666777788888889999999999988


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009469          494 ITAVRKIMQSIGFLGPA  510 (534)
Q Consensus       494 i~~~~~~~~~~~~~~~~  510 (534)
                      +.+...+..+..++...
T Consensus       363 l~s~~~m~~~~~~~~~~  379 (513)
T KOG0254|consen  363 LFGAAGMSICLVILAVV  379 (513)
T ss_pred             HHhHHHHHHHHHHHHHH
Confidence            87664444444433333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.85  E-value=6.4e-19  Score=187.49  Aligned_cols=166  Identities=17%  Similarity=0.267  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHH-hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSI-AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWS  283 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~  283 (534)
                      ++.+..+++..+...+..+.+.. ...++.+++|++..+.+++.+.+.....+..+++|+++|| +|||++++++.++++
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            44555555555666666655554 4555678899999999999999998889999999999999 999999999999999


Q ss_pred             HHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS--ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      ++.++++++.+ ....++++|+++|+|.|...+...++++|++|++  +|+.++++++.+.++|..+||.+++++.+++|
T Consensus        93 ~g~~~~~~~~~-~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         93 IGYFMTGMSLL-KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             HHHHHHHHhcc-chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999998862 1334558899999999999999999999999877  45789999999999999999999999999999


Q ss_pred             chHHHHHHHHH
Q 009469          362 WPSVFYSFGSL  372 (534)
Q Consensus       362 w~~~f~i~~~~  372 (534)
                      ||+.|++.++.
T Consensus       172 w~~~F~i~~i~  182 (489)
T PRK10207        172 YSVTYNLCGAG  182 (489)
T ss_pred             hHHHHHHHHHH
Confidence            99999986543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.8e-18  Score=177.82  Aligned_cols=252  Identities=18%  Similarity=0.216  Sum_probs=186.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhcc-CChHHHHHHHHHHhhcccchhhHHHHHH
Q 009469          244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNML  322 (534)
Q Consensus       244 ~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~-~~~~~ll~~r~l~Gig~g~~~~~~~~~i  322 (534)
                      .+.+.+++.+|.++|+++.|+++||+|||..+.++.++..++.+++.++.. ..+.+++++|++.|+..|......+-++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999888887776531 2678999999999999999999999999


Q ss_pred             hhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH-hh-cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCC-----Chhhh
Q 009469          323 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI-LI-QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----DPELR  395 (534)
Q Consensus       323 ~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~-l~-~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~-----~~~~~  395 (534)
                      .|..|++.||..-.+...+..+|.+++..++.- +. +.-.|++.+.+..+.+++.+++. .+.|++|+-     .++.+
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCCHHH
Confidence            999999999999999999999999999666532 33 34469988887777766655544 445555542     11111


Q ss_pred             HHHHhhhh-C---------------CCccccccccccHHHhhcchhHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          396 AEEKRHIL-G---------------GSISKEAVSVIPWKLILSKAPVWA----L-IISHFCHNWGTFILLTWMPTYYNQV  454 (534)
Q Consensus       396 ~~~~~~~~-~---------------~~~~~~~~~~~~~~~ll~~~~~~~----~-~l~~~~~~~~~~~~~~~lp~~~~~~  454 (534)
                      ..+..+.. +               ...+..+.+...++++++++....    . .+.......+......|...++++ 
T Consensus       221 A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-  299 (485)
T KOG0569|consen  221 ARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-  299 (485)
T ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-
Confidence            10000000 0               001111124456778888754332    2 222333334556677777778877 


Q ss_pred             hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 009469          455 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAV  497 (534)
Q Consensus       455 ~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~~~  497 (534)
                      .|++..++.+.....++..++.++++.++.||+|||++++.+.
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL  342 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            5999999999999999999999999999999999999887655

>PTZ00207 hypothetical protein; Provisional

Probab=99.83  E-value=5.7e-18  Score=180.92  Aligned_cols=284  Identities=16%  Similarity=0.123  Sum_probs=207.2

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      .++|..+........+. ...+.++.+.+.+.+++|++..+++++.++. ....++.++.|++.||+|+|+++.++.+++
T Consensus        24 ~~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45577666555544433 4455677888899999999999999998874 345567888999999999999999999999


Q ss_pred             HHHHHHHhhhcc----CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH-HHHHHHHhh
Q 009469          283 SVATVLTPVAAR----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVT-GLAVSPILI  357 (534)
Q Consensus       283 ~i~~~l~~~~~~----~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~i-gp~i~~~l~  357 (534)
                      +++.++++++.+    .+++.+.+.|++.|+|.+...+.....+.+||| ++||+++|+...+.++|+++ +++..+++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998721    278999999999999999888999999999995 78999999999999999976 455555443


Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCCh---h--hhHHHHh--h-----------------------------
Q 009469          358 QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP---E--LRAEEKR--H-----------------------------  401 (534)
Q Consensus       358 ~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~---~--~~~~~~~--~-----------------------------  401 (534)
                        .+|++.|++.+++.+++.++++.+.++++....   +  .+++++.  .                             
T Consensus       181 --~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~y  258 (591)
T PTZ00207        181 --DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVF  258 (591)
T ss_pred             --HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHH
Confidence              468888888888888877777766655432110   0  0010000  0                             


Q ss_pred             ------------------------hh------C--------------C-Cc-----------------cc-------c--
Q 009469          402 ------------------------IL------G--------------G-SI-----------------SK-------E--  410 (534)
Q Consensus       402 ------------------------~~------~--------------~-~~-----------------~~-------~--  410 (534)
                                              ..      .              . ..                 +.       +  
T Consensus       259 l~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (591)
T PTZ00207        259 LPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYI  338 (591)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCC
Confidence                                    00      0              0 00                 00       0  


Q ss_pred             -ccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          411 -AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE--SGLFCVLPWLTMAVFANMGGWIADTL  487 (534)
Q Consensus       411 -~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~--~g~l~~~~~~~~iig~~i~g~l~dr~  487 (534)
                       +.....+.+.+++..+|++.+.++|.......+.+.+.++.+..-|.+...  ...+.++..+++.+|++.+|.+...+
T Consensus       339 ~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~  418 (591)
T PTZ00207        339 APQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS  418 (591)
T ss_pred             CCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH
Confidence             000115667778889999999999998888888888888888742763333  33378899999999999999988444


Q ss_pred             hccc
Q 009469          488 VSKG  491 (534)
Q Consensus       488 g~r~  491 (534)
                      .+|+
T Consensus       419 ~~~~  422 (591)
T PTZ00207        419 QKRR  422 (591)
T ss_pred             Hhhc
Confidence            4433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.83  E-value=1.3e-17  Score=173.10  Aligned_cols=269  Identities=12%  Similarity=0.057  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHH--HHHHHHHHHHHHHHH-HHHHhhhCCchHHHHHHHHH-HH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLI--QSSFFWGYLLTQIVG-GIWADKFGGKPVLGFGVIWW-SV  284 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i--~s~~~l~~~~~~~~~-G~l~Dr~Grr~~l~~g~~~~-~i  284 (534)
                      ++.++..++..+.......+.+|.+.++.|.+..++|++  .++..+...+.+|++ ++..||+|||+.+++...+. ++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455666778888888899999999999999999999997  466677777788887 44789999998875555332 22


Q ss_pred             HHHHHh-hhccCC-hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          285 ATVLTP-VAARIG-LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       285 ~~~l~~-~~~~~~-~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      .....+ +....+ ...++...++.++..+...+...++..|..++++++...+....+..+|.++|+...+++.+.+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw  162 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ  162 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            222222 211112 223344445556666777778888888888888888888888888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFI  442 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~  442 (534)
                      |..|++.+++.++..+..+...++.+++++. ...               ...++++++|+|.++...+..++...+...
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  226 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAVASPEA-PLA---------------RRASLFRFFRRPLAWSLLALALLSAMTAVS  226 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-chh---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHH
Confidence            9999999988776666554443332211110 000               012356788899888888888888887888


Q ss_pred             HHHHHHHHHHHhhCCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcccchH
Q 009469          443 LLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       443 ~~~~lp~~~~~~~g~s~~~~g~l~~~~~~-~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ...+.+.|+++ .|+++.+.+.+.....+ ..+++.++.|++.||+|+++...
T Consensus       227 ~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~  278 (390)
T TIGR02718       227 GFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFI  278 (390)
T ss_pred             HHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            88899999988 69999999998887764 66777899999999999987654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.83  E-value=4.9e-19  Score=186.37  Aligned_cols=260  Identities=16%  Similarity=0.108  Sum_probs=191.8

Q ss_pred             hhhHHHH-hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hCCc-hHHHHHHHHHHHHHHHHhhhccC
Q 009469          222 DRVNMSI-AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGK-PVLGFGVIWWSVATVLTPVAARI  295 (534)
Q Consensus       222 ~~~~~~~-~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr----~Grr-~~l~~g~~~~~i~~~l~~~~~~~  295 (534)
                      ....+.. ..+.+.+++|+++.++|++.++..+..++..|+.|+++||    +||| +.++++.+..+++.+++.+.+..
T Consensus        14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~   93 (437)
T TIGR00792        14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF   93 (437)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence            3333443 4455678899999999999999999999999999999998    6774 46778888888888777766522


Q ss_pred             C----hHHHHHHHHHHhhcccchhhHHHHHHhhhc-cCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCch
Q 009469          296 G----LPFLLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWP  363 (534)
Q Consensus       296 ~----~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-------~~gw~  363 (534)
                      +    ...+++.+++.+++.+....+..++..+.. ++++|++..++...+..+|..+++.+.+.+..       ..+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence            1    345667778888888887788888888887 46899999999888888888877766655542       45899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                      +.+++.+++.++..++.+...++++++.+..+            +.+......++.++++|.++.+.+..++...+....
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSEIPKNI------------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCCCCccc------------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999888887777666655555432111000            000011234667889999998888888877777766


Q ss_pred             HHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          444 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+.+.|.+..++ +....+.+.....++.+++.++.++++||+|+|+...
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~  291 (437)
T TIGR00792       242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFA  291 (437)
T ss_pred             cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            6666667665555 4566677777788999999999999999999987644

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=169.95  Aligned_cols=253  Identities=15%  Similarity=0.076  Sum_probs=168.2

Q ss_pred             HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhccc
Q 009469          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEG  312 (534)
Q Consensus       233 ~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g  312 (534)
                      ..+..+.+..-.|++.+.+.+...+.++.+|.++||+|||+++.+|.+..++..++.+++.  |+..+++.|++.|+.-|
T Consensus        59 ~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~kg  136 (451)
T KOG2615|consen   59 IGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFKG  136 (451)
T ss_pred             hCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccC
Confidence            3344445666789999999999999999999999999999999999999999999999998  88777788999999977


Q ss_pred             chhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccC-chHHH--HHHHHHHHHHHHHHHHhhcC
Q 009469          313 VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ---KFG-WPSVF--YSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~---~~g-w~~~f--~i~~~~~~i~~i~~~~~~~~  386 (534)
                      . ..+..++++|++++|+|+.+++.+...+++|.++||++++++..   ..| +...+  ++..++.+.-...+.++.++
T Consensus       137 n-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  137 N-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             c-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            5 47889999999999999999999999999999999999999987   233 22222  11122222212222333444


Q ss_pred             CCCCChhhhHHH-HhhhhCCCccccccccccHHHhhcchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 009469          387 SPKEDPELRAEE-KRHILGGSISKEAVSVIPWKLILSKAPVW-------ALIISHFCHNWGTFILLTWMPTYYNQVLKFN  458 (534)
Q Consensus       387 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s  458 (534)
                      +-+.+++.++.. ..+..+...+....+...-..++++++..       .+.+-.+.+...+..+.++.+.+....+|++
T Consensus       216 TL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~s  295 (451)
T KOG2615|consen  216 TLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYS  295 (451)
T ss_pred             cccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCC
Confidence            322222110000 00000000111111111111234444322       2333334444444445555555556678999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          459 LTESGLFCVLPWLTMAVFANMGGWIADTLV  488 (534)
Q Consensus       459 ~~~~g~l~~~~~~~~iig~~i~g~l~dr~g  488 (534)
                      +.+.|.+++..++.+.+.........+|.+
T Consensus       296 s~~~G~vl~~tGl~m~~~ql~~~~~l~~~~  325 (451)
T KOG2615|consen  296 SMQQGKVLSTTGLLMLVIQLALVPILPRYK  325 (451)
T ss_pred             hhhheeeeehhhHHHHHHHHhccccccccc
Confidence            999999998888888877777666666655

>TIGR00889 2A0110 nucleoside transporter

Probab=99.80  E-value=3.4e-17  Score=171.43  Aligned_cols=259  Identities=10%  Similarity=0.018  Sum_probs=177.8

Q ss_pred             HHHHHHHhhhhHHH-HhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHhh
Q 009469          214 SAFLLCNMDRVNMS-IAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       214 ~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~g~~~~~i~~~l~~~  291 (534)
                      +..+..+.....+. +..+.+.+++|++..++|++.+++.++..++++++|+++||+|+ |+++.++.++..++..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555554 44455677899999999999999999999999999999999965 77888888888888878777


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhh--------ccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW--------IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~--------~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      .+  +++.+++.|++.|++.+...+...++...+        .....|.+.+|      .+|.++||++++.+....+|.
T Consensus        89 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~  160 (418)
T TIGR00889        89 VT--TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI  160 (418)
T ss_pred             hc--CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH
Confidence            76  788888999999998776666655543222        22223444444      378888888888874333354


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFIL  443 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  443 (534)
                       .|++.+++.++..++. ...++.++.+++.+....+           ......+.++|+|.++.+.+..++........
T Consensus       161 -~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  227 (418)
T TIGR00889       161 -QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKV-----------MLGLDAFILFKNKRMAIFFFFSMLLGAPLQIT  227 (418)
T ss_pred             -HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHH-----------HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHH
Confidence             3555555555544433 3344433211111000000           00112455788999888888877776666666


Q ss_pred             HHHHHHHHHHhhCCCh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          444 LTWMPTYYNQVLKFNL--------TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       444 ~~~lp~~~~~~~g~s~--------~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+++.|+++ .|.++        ...+.+.++..+..+++.++.|++.||+|+|++++
T Consensus       228 ~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~  285 (418)
T TIGR00889       228 NIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML  285 (418)
T ss_pred             HHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            7788888877 46543        55688888889999999999999999999998544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.79  E-value=1.3e-16  Score=154.97  Aligned_cols=183  Identities=19%  Similarity=0.296  Sum_probs=156.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHH
Q 009469          202 FPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW  281 (534)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~  281 (534)
                      .+.+|...+..........+-....+.+.|...+..|.+..+..++......+..+++..+|.++|++|||+.+.+..+.
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~  152 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV  152 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence            34567777777777777777666677778888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          282 WSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       282 ~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      .++..++.+.++  |+..+++.|.+.|+|.|+ .|...++-.|..|..+|+.-+-.. ..+.+|.++...+...++.++|
T Consensus       153 t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g  228 (528)
T KOG0253|consen  153 TGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG  228 (528)
T ss_pred             HHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999  888899999999999998 788999999999999999887777 8999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 009469          362 WPSVFYSFGSLGSIWFALWLKKAYSSPK  389 (534)
Q Consensus       362 w~~~f~i~~~~~~i~~i~~~~~~~~~~~  389 (534)
                      |||.+........+.+ .+.+..++.++
T Consensus       229 wr~~l~~~~~pl~~~a-~f~~w~~ESpR  255 (528)
T KOG0253|consen  229 WRYLLFTSSTPLMFAA-RFLVWVYESPR  255 (528)
T ss_pred             HHHHHHHHHhHHHHHH-HHHhhcccCcc
Confidence            9998887775544443 34444555443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=1.9e-17  Score=178.59  Aligned_cols=251  Identities=18%  Similarity=0.155  Sum_probs=177.0

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccc
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~  313 (534)
                      .+.+..+.....+..+++.+|..+|++++|+++||+|||++++++.++.+++.++.++++  |++.+++.|++.|++.++
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~  187 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSG  187 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccc
Confidence            355667888899999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             hhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-
Q 009469          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP-  392 (534)
Q Consensus       314 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~-  392 (534)
                      .......++.|++++++|+.+..+ ......++.+++++++++..  +|||.+++..+..++.+++ +++.++.++... 
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLS  263 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHH
Confidence            999999999999999999999999 88888899999999999887  8999999998888877666 444444443111 


Q ss_pred             -----hhhHHHHhh-hhC-CCcc----------------ccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          393 -----ELRAEEKRH-ILG-GSIS----------------KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       393 -----~~~~~~~~~-~~~-~~~~----------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                           +..+..++. ... ....                ....+...+.++++.+++....+...+..+......+-++.
T Consensus       264 ~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~  343 (521)
T KOG0255|consen  264 KGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL  343 (521)
T ss_pred             cCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence                 000000000 000 0000                00011133566666665444444444433333222222233


Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .... +|.+..   +...+.......+....+...|++|||....
T Consensus       344 ~~~~-lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~  384 (521)
T KOG0255|consen  344 NVSG-LGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLF  384 (521)
T ss_pred             hhhh-cCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHH
Confidence            3322 444433   2333344466666677789999998886433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.77  E-value=3.2e-16  Score=167.62  Aligned_cols=166  Identities=20%  Similarity=0.240  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHhhhhHHHHhHH-HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHHHHHHH
Q 009469          211 LCFSAFLLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~i~~~l  288 (534)
                      .+++..++..+..+.+...++ ++.+++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.++
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            334444455555555555444 4568899999999998888877777777899999999 59999999999999999988


Q ss_pred             HhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHH
Q 009469          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVF  366 (534)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f  366 (534)
                      ++++.+ +.+.+++.+++.|+|.|...+...+++.+++|+++  |..++++++.+.++|.++||.+++++.+++||++.|
T Consensus       105 ~~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        105 VAWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             HHHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            888642 35667788999999999988999999999997654  456889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 009469          367 YSFGSLGSIWF  377 (534)
Q Consensus       367 ~i~~~~~~i~~  377 (534)
                      ++.++..++..
T Consensus       184 ~i~~i~~~i~~  194 (500)
T PRK09584        184 ALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHH
Confidence            98775444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=2.8e-16  Score=157.46  Aligned_cols=285  Identities=16%  Similarity=0.150  Sum_probs=223.8

Q ss_pred             CcccCCchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          198 WWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      ..+..++||.+++...+..+.+.+.+..+++...+....+| +...+-|...+|++.+....+++-|+.|++|-|..+.+
T Consensus        36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            34577899999999999999998888888888888888899 77788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccC----ChH--HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 009469          278 GVIWWSVATVLTPVAARI----GLP--FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA  351 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~~~----~~~--~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~  351 (534)
                      +..+.+++..+-..+...    .++  ....+..+.+.+.-..+.....+..-||++++|..|..+-..+..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            999999999887665421    233  56678888888877777777788889999999999999999999999999999


Q ss_pred             HHHHhhccc------CchH--HHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcc
Q 009469          352 VSPILIQKF------GWPS--VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK  423 (534)
Q Consensus       352 i~~~l~~~~------gw~~--~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  423 (534)
                      +...+..+-      .|-.  .|+..+++.++.+++..+..+++|+.++........         +..-....+..+++
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n  265 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKN  265 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcC
Confidence            988887654      2432  344455555555555555555544444333222211         01123457778999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          424 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +.+.++.+.+.+....++...+.+...+.. .|++...+|.......++++++.++.|.++||.++.+..
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~  334 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT  334 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            999999999888888888877777655554 477778999999999999999999999999999877643

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.74  E-value=3.2e-15  Score=157.39  Aligned_cols=171  Identities=14%  Similarity=0.226  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVA  285 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~  285 (534)
                      .+..++...+...+..+.+...+|.+ .+++|++..+.+++.+.+.....++++++|+++||+ |||++++++.++.+++
T Consensus        10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            34444445555555666566566654 667899999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          286 TVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS--ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       286 ~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      .++++.... +...+++...+.++|.|...+...++++|.+|++  +|..++++.+.+.++|+.++|.+.+++.+.+||+
T Consensus        90 ~lll~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         90 HVVLGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            877765431 2222444444555666777777889999999875  6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009469          364 SVFYSFGSLGSIWFAL  379 (534)
Q Consensus       364 ~~f~i~~~~~~i~~i~  379 (534)
                      +.|.+.++..++..+.
T Consensus       169 ~~F~iaaigm~l~li~  184 (493)
T PRK15462        169 MGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998866544443333

>PRK09669 putative symporter YagG; Provisional

Probab=99.73  E-value=4.7e-16  Score=164.31  Aligned_cols=250  Identities=14%  Similarity=0.077  Sum_probs=173.2

Q ss_pred             hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hCCc-hHHHHHHHHHHHHHHHHhhhccCC----hHH
Q 009469          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGK-PVLGFGVIWWSVATVLTPVAARIG----LPF  299 (534)
Q Consensus       229 ~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr----~Grr-~~l~~g~~~~~i~~~l~~~~~~~~----~~~  299 (534)
                      ...++.+.+|+++.++|++.++..+...+..|+.|+++||    +||| +.++++.+..+++.+++...+..+    ...
T Consensus        32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~  111 (444)
T PRK09669         32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY  111 (444)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            4555788899999999999999999999999999999999    7774 556677777777776555554211    334


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhc-cCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCchHHHHHHHH
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGS  371 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-------~~gw~~~f~i~~~  371 (534)
                      +++..++.+++......+..++.+|+. ++++|.+..++...+..+|..+++.+...+..       ..+|+..+.+.++
T Consensus       112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i  191 (444)
T PRK09669        112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL  191 (444)
T ss_pred             HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            555556667766777778889999998 45789998888888888888777765544432       2467878887777


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          372 LGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY  451 (534)
Q Consensus       372 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~  451 (534)
                      +.++..++.+...+++..++++.               +......++.+++++.++.+.+..++...+........++|.
T Consensus       192 i~~v~~~~~~~~~~e~~~~~~~~---------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~  256 (444)
T PRK09669        192 LGVVLFFCCFFMTKERYTPEVDN---------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYV  256 (444)
T ss_pred             HHHHHHHHHhCCeEEecCCCCcC---------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheee
Confidence            77666655555444432211100               001123467788999998888877776666655555555555


Q ss_pred             HHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          452 NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       452 ~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +...+ ++...+.+.....+..+++.++.+++.||+|+|+...
T Consensus       257 ~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~  298 (444)
T PRK09669        257 NYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFK  298 (444)
T ss_pred             eeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            44333 3334445555666778888889999999999987544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.72  E-value=2.2e-15  Score=157.93  Aligned_cols=280  Identities=14%  Similarity=0.088  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhCCchHHHHH-HH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD----KFGGKPVLGFG-VI  280 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D----r~Grr~~l~~g-~~  280 (534)
                      |.++.++. ..+...+.+....+..+++.+++|.+....+++..+..+...+.+|++|+++|    |+|||+.++++ .+
T Consensus         4 ~~li~~~~-~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         4 RKLLRVAS-VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            44444443 33444556666777777788999999999999999999999999999999999    59999988764 66


Q ss_pred             HHHHHHHHHhhhccCC-------------h--HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcc--hhHHHHHHHHHH
Q 009469          281 WWSVATVLTPVAARIG-------------L--PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER--SRSLAFVYSGMY  343 (534)
Q Consensus       281 ~~~i~~~l~~~~~~~~-------------~--~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r--g~~~gi~~~~~~  343 (534)
                      ..+++.++++++.+..             +  +.++++-.+..++.....++..++++|.+|+++|  +.+.++.+.+.+
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~  162 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA  162 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence            6666667777665210             0  2233333445567778888999999999998865  689999999999


Q ss_pred             HHHHHHHHHHHHh--hccc-------------CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCcc
Q 009469          344 LGSVTGLAVSPIL--IQKF-------------GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSIS  408 (534)
Q Consensus       344 lG~~igp~i~~~l--~~~~-------------gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (534)
                      +|.++|+.+++++  ...+             +.++.|++.+++.++..++.++..+|.+...++...+++.   +.  .
T Consensus       163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~---~~--~  237 (477)
T TIGR01301       163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA---AP--P  237 (477)
T ss_pred             HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc---cc--c
Confidence            9999999999875  2211             4688899888888877777777777765422211100000   00  0


Q ss_pred             ccccccccHHHhhc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChh------h----hHHHHHHHHHH
Q 009469          409 KEAVSVIPWKLILS-----KAPVWALIISHFCHNWGTFILLTWMPTYYNQ-VLKFNLT------E----SGLFCVLPWLT  472 (534)
Q Consensus       409 ~~~~~~~~~~~ll~-----~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~-~~g~s~~------~----~g~l~~~~~~~  472 (534)
                      .+......++++++     .+.++.+++..++.+++.+.+..|.+.|+.+ .++-++.      +    ..+...+..+.
T Consensus       238 ~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~  317 (477)
T TIGR01301       238 SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVV  317 (477)
T ss_pred             cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            00000112233322     4678999999999999999999999888764 5554321      1    12334444555


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 009469          473 MAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       473 ~iig~~i~g~l~dr~g~r~  491 (534)
                      ..+..++..++.+++|+|+
T Consensus       318 ~~i~s~~l~~l~~~~g~~k  336 (477)
T TIGR01301       318 LGITSIGMEKLCRGWGAGK  336 (477)
T ss_pred             HHHHHHHHHHHHHHhccch
Confidence            5677777888899998543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.71  E-value=4.1e-16  Score=163.92  Aligned_cols=253  Identities=17%  Similarity=0.238  Sum_probs=196.8

Q ss_pred             HhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhCCch-HHHHHHHHHHHHHHHHhhh-c-cCC----
Q 009469          228 IAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD----KFGGKP-VLGFGVIWWSVATVLTPVA-A-RIG----  296 (534)
Q Consensus       228 ~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D----r~Grr~-~l~~g~~~~~i~~~l~~~~-~-~~~----  296 (534)
                      ...+.+.+.+|+++..+|++..+..+..++..|+.|.++|    |+|||+ .+++|.+..+++.+++... + ..+    
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            3455577888999999999999999999999999999999    799765 4567888888888877765 3 111    


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-------CchHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-------GWPSVFYS  368 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~-------gw~~~f~i  368 (534)
                      ...+++..++..++......+..++..|+.+ +++|.+..++-..+..+|.++...+.+.+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            2234666677788989999999999999997 578999999988888888876766666665432       58888888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          369 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       369 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      .+++.++..++..+..++.+++.++..             ++..-...++.++++|+++.+.+..++...+........+
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~~-------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~  249 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQE-------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP  249 (428)
T ss_pred             HHHHHHHHhhhhhheeeeccccccccc-------------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH
Confidence            888888887777777666211111110             0111123467789999999999999998888888888889


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +|.+...|.+ ...+.+.....++.+++.++.++++||+|+|+...
T Consensus       250 y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~  294 (428)
T PF13347_consen  250 YYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI  294 (428)
T ss_pred             HHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh
Confidence            9999888866 56677778888999999999999999999998655

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.71  E-value=3.7e-17  Score=153.25  Aligned_cols=283  Identities=17%  Similarity=0.197  Sum_probs=206.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIW  281 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~  281 (534)
                      .+|...++..++..|.+++.+-..+.....+..+.+++.++..++.++|.+...+.+.++|++.|| +|-|...++-+++
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f  119 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF  119 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence            445666666677777777777777888888899999999999999999999999999999999997 6888877777777


Q ss_pred             HHHHHHHHhhhc-cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          282 WSVATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF  360 (534)
Q Consensus       282 ~~i~~~l~~~~~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~  360 (534)
                      ..++.++++.-. ...+|+++++|++.|+|.-....+.+.+..-||..||.+.++|+..+...+|..+--.+.+++.+..
T Consensus       120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            778887776532 1158999999999999988888889999999999999999999999999999998888888887653


Q ss_pred             Cc------hHHH---HHHHHHHHHH-HHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHH
Q 009469          361 GW------PSVF---YSFGSLGSIW-FALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALI  430 (534)
Q Consensus       361 gw------~~~f---~i~~~~~~i~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  430 (534)
                      +-      ....   ..++...+.. ++.....-...++.+.....++  ...+ +    ..+..+.+. + .|++|.+.
T Consensus       200 ~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~--g~~G-e----~pkLtdv~~-f-~ppfw~~~  270 (459)
T KOG4686|consen  200 GRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEE--GFLG-E----EPKLTDVNT-F-YPPFWVLV  270 (459)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhc--Cccc-C----Ccccccccc-c-CccHHHHH
Confidence            31      1111   1111111111 1111111111111110000000  0000 0    000111111 1 47899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          431 ISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       431 l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +..+++..+.+.+.+.-|.++++.+|+|+..++.+.+...+...+..++.|.++||+|++-+.+
T Consensus       271 iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv  334 (459)
T KOG4686|consen  271 IICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWV  334 (459)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence            9999999999999999999999999999999999999999999999999999999999886543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.70  E-value=1.8e-15  Score=161.14  Aligned_cols=267  Identities=12%  Similarity=0.046  Sum_probs=180.3

Q ss_pred             HHHHhhhhHHHHh-HHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHh----hhCC-chHHHHHHHHHHHHHHHHh
Q 009469          217 LLCNMDRVNMSIA-ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD----KFGG-KPVLGFGVIWWSVATVLTP  290 (534)
Q Consensus       217 ~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D----r~Gr-r~~l~~g~~~~~i~~~l~~  290 (534)
                      +...+....+..+ ..++.+.+|+++..+|.+..+..+..++..|+.|.++|    |+|| |+.++++.+..+++.+++.
T Consensus        16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            3344444445544 44467778999999999999999999999999999999    5698 5667778888777766664


Q ss_pred             hhccC--C--hHHHHHHHHHHhhcccchhhHHHHHHhhhc-cCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc------
Q 009469          291 VAARI--G--LPFLLIMRAFMGIGEGVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK------  359 (534)
Q Consensus       291 ~~~~~--~--~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~-~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~------  359 (534)
                      ..+..  +  +..+++..++.+++......+..+++.|+. ++++|.+..++-..+..+|+.+.+.+...+...      
T Consensus        96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~  175 (473)
T PRK10429         96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR  175 (473)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            43311  1  223445556667888888888999999998 588999999987777777766665554433221      


Q ss_pred             -cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHH
Q 009469          360 -FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW  438 (534)
Q Consensus       360 -~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~  438 (534)
                       .+|++...+.+++.++..++.+...++++.+......+          +.+......++.+++||.++.+.+..++...
T Consensus       176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~  245 (473)
T PRK10429        176 GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE----------GSHLTLKDIVALIYKNDQLSCLLGMALAYNI  245 (473)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc----------ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence             24666666666666655555554444432211100000          0001112235556789999888888888777


Q ss_pred             HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      .......+.++|.+...+ +....+.+.....++.+++.++.+++.||+|+|+...
T Consensus       246 ~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~  300 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWA  300 (473)
T ss_pred             HHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            777776776766655433 5556666677777888999999999999999998654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.1e-16  Score=160.00  Aligned_cols=304  Identities=15%  Similarity=0.185  Sum_probs=199.0

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhh-C-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF-N-------WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPV  274 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~  274 (534)
                      ++....+.++.+++|...++...++...+-+...+ |       +++...+.+..+..+|.++|++++|++.|++|||++
T Consensus        37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v  116 (538)
T KOG0252|consen   37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV  116 (538)
T ss_pred             HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            34466778888888999999999988888765544 2       456677899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCC-----hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Q 009469          275 LGFGVIWWSVATVLTPVAARIG-----LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG  349 (534)
Q Consensus       275 l~~g~~~~~i~~~l~~~~~~~~-----~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~ig  349 (534)
                      +...+++++++.+++++....+     ...+...|+++|+|.|+-+|...++.+|...++.||...+.+.+..++|...|
T Consensus       117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG  196 (538)
T KOG0252|consen  117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG  196 (538)
T ss_pred             hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence            9999999999999877664211     45788999999999999999999999999999999999999888888888877


Q ss_pred             HHHHHHhhcc----c-----------CchHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----h-hhhHHHHhhhhCC---
Q 009469          350 LAVSPILIQK----F-----------GWPSVFYSFGSLGSIWFALWLKKAYSSPKED-----P-ELRAEEKRHILGG---  405 (534)
Q Consensus       350 p~i~~~l~~~----~-----------gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~---  405 (534)
                      .+++-.+..-    +           =||..+.+.++..++++..- ...+++++-.     + +....+..+....   
T Consensus       197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R-l~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~  275 (538)
T KOG0252|consen  197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR-LKMPETARYTALVSKKLKQAAGDMKKVLSVDIE  275 (538)
T ss_pred             cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh-hcCCcchhHHHHhhcCHhhhhhccccccccccc
Confidence            7766555421    1           18877766555554433322 2233332211     0 0000000000000   


Q ss_pred             ----Cccccccc---cccHHHhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHH--------HHH
Q 009469          406 ----SISKEAVS---VIPWKLILSK---APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL--------FCV  467 (534)
Q Consensus       406 ----~~~~~~~~---~~~~~~ll~~---~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~--------l~~  467 (534)
                          .......+   ...+...+..   +.++..+...|+.-.+++....+...+++. .|+.+.....        ...
T Consensus       276 ~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~  354 (538)
T KOG0252|consen  276 AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNL  354 (538)
T ss_pred             hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHH
Confidence                00000000   0112222222   345666677788888888888888888876 4765544333        111


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          468 -LPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS  517 (534)
Q Consensus       468 -~~~~~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~~~  517 (534)
                       +...+.+.|..+...++|++||+..         ...+++++.++.+.++
T Consensus       355 iia~~~~vPGyw~tv~~id~iGRk~i---------q~~GF~~~~i~~~~~~  396 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGRKYI---------QLMGFFIMTIFFFVIA  396 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhhHHH---------HHhhHHHHHHHHHHHc
Confidence             1222233355566778999999964         4445555554444443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.66  E-value=9.2e-14  Score=143.75  Aligned_cols=261  Identities=13%  Similarity=0.167  Sum_probs=185.9

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC-CchHHHHHHHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-GKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G-rr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      .+++.+.....+.+.++.+.++.|.+..++|.+.++..+..++.++++|.++||.+ +|+++.+..++.++..+.....+
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~   89 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS   89 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555556666778888889999999999999999999999999999999999986 56777777777777666666666


Q ss_pred             cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHH-HHHhhcccC---chHHHHHH
Q 009469          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV-SPILIQKFG---WPSVFYSF  369 (534)
Q Consensus       294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i-~~~l~~~~g---w~~~f~i~  369 (534)
                        +++.+++..++..+......+...++..+...  +++.-.|-.....++|-+++... ++.+....+   ..+.+++.
T Consensus        90 --~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~  165 (400)
T PF03825_consen   90 --SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIA  165 (400)
T ss_pred             --cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHH
Confidence              67777777888888878788888888888774  45556666666677777666443 233333322   23455555


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      ++..++.....+. .|+.++++......+            +....+...++|+|+++.+.+..++.........++.+.
T Consensus       166 ~~~~~ll~~~~l~-lp~~~~~~~~~~~~~------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~  232 (400)
T PF03825_consen  166 AILSLLLAGFALF-LPKTPPKRSAKESVK------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSI  232 (400)
T ss_pred             HHHHHHHHHHHHh-CCCCccccccCCCcc------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443333333 333332111110000            001112345899999999999999999899999999999


Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      |+++..|.+....+.+.++..+..++.-...+++..|+|.+++
T Consensus       233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l  275 (400)
T PF03825_consen  233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL  275 (400)
T ss_pred             HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999544788888888888888899999999999999998864

>PRK09848 glucuronide transporter; Provisional

Probab=99.65  E-value=2.3e-14  Score=151.56  Aligned_cols=265  Identities=12%  Similarity=0.041  Sum_probs=164.2

Q ss_pred             HHHHHHhhhhHHHH-hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh----CCchH-HHHHHHHHHHHHHH
Q 009469          215 AFLLCNMDRVNMSI-AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF----GGKPV-LGFGVIWWSVATVL  288 (534)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~----Grr~~-l~~g~~~~~i~~~l  288 (534)
                      ..+..........+ ..+++.+.+|+++.++|++.++..+..++..+++|+++||.    |||+. +.++.+...+..++
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~   95 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL   95 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence            33333334333333 34456777899999999999999999999999999999996    66664 45565555444433


Q ss_pred             H-hhh----ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHH-----HHHHHHHHHHHHHHhh
Q 009469          289 T-PVA----ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSG-----MYLGSVTGLAVSPILI  357 (534)
Q Consensus       289 ~-~~~----~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~-----~~lG~~igp~i~~~l~  357 (534)
                      . ...    .......+++..++.+++.+...++..++..+..+ +++|.+..++-..+     ..++..++|.+.+...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g  175 (448)
T PRK09848         96 VFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSP  175 (448)
T ss_pred             HHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3 221    10112223444566777788787777777777664 46788776665443     2345555666655432


Q ss_pred             ccc--CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHH
Q 009469          358 QKF--GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFC  435 (534)
Q Consensus       358 ~~~--gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~  435 (534)
                      ...  +|.....+.+++.++..++.....+++.+++.+.                ......++.++++|.++...+..++
T Consensus       176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~----------------~~~~~~~~~l~~n~~f~~~~~~~~~  239 (448)
T PRK09848        176 EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ----------------PSLKISLQTLKRNRPLFMLCIGALC  239 (448)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC----------------CCHHHHHHHHhCCchHHHHHHHHHH
Confidence            111  1211112222222222222222223321111000                0111246778999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          436 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       436 ~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                      ...+......+.|.|+++.+|.+....++......++.+++.++.+++.||+++|+.+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        240 VLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             HHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            888888888888888888888777666665555567788899999999999999876543

>PRK11462 putative transporter; Provisional

Probab=99.65  E-value=1.1e-13  Score=146.67  Aligned_cols=259  Identities=10%  Similarity=0.030  Sum_probs=179.8

Q ss_pred             HHHhhhhHHHHh-HHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hCCc-hHHHHHHHHHHHHHHHHhh
Q 009469          218 LCNMDRVNMSIA-ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGK-PVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       218 ~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr----~Grr-~~l~~g~~~~~i~~~l~~~  291 (534)
                      ........++.+ ..++.+.+|+++..+|.+..+.-+.-++.-|+.|.++||    +||| +.++++.+..+++.+++..
T Consensus        20 ~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~   99 (460)
T PRK11462         20 ASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS   99 (460)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh
Confidence            333444444443 444678889999999999999999999999999999996    6876 4556777777877776655


Q ss_pred             hccCC----hHHHHHHHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc------
Q 009469          292 AARIG----LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF------  360 (534)
Q Consensus       292 ~~~~~----~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~------  360 (534)
                      .+..+    ...+++.-++..++..+...+..++.+++.+ ++||.+..++...+..+|..+++.+...+....      
T Consensus       100 ~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~  179 (460)
T PRK11462        100 TPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKP  179 (460)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            54211    2335556666788888888888899999987 789999999999999999888877766555433      


Q ss_pred             -CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHH
Q 009469          361 -GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG  439 (534)
Q Consensus       361 -gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~  439 (534)
                       +|+....+.+++.+++..+.+...+++++++++..                .....++.+++++.++.+....++....
T Consensus       180 ~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~----------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~  243 (460)
T PRK11462        180 LGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT----------------SMREDLRDIWQNDQWRIVGLLTIFNILA  243 (460)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCC----------------CHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence             47777777777666665555554444332211000                0112356678888888777666666666


Q ss_pred             HHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          440 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       440 ~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      .........+|.+..+|. ....+.+.....++++++.+++++++||+++|+..
T Consensus       244 ~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~  296 (460)
T PRK11462        244 VCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIF  296 (460)
T ss_pred             HHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            555555555555554453 33445566777788899999999999999988753

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.64  E-value=1.1e-13  Score=140.99  Aligned_cols=292  Identities=13%  Similarity=0.081  Sum_probs=177.9

Q ss_pred             HHHHHHhhhhHHHHhHHHHHh-hhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH--HHHHH-HHh
Q 009469          215 AFLLCNMDRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW--SVATV-LTP  290 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~--~i~~~-l~~  290 (534)
                      ..+...+......++.+.+.+ +.|++.+++|.+.++..+...+.+|+.|.++||+|.||-++....+.  ..+.+ ...
T Consensus        15 ~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v   94 (412)
T PF01306_consen   15 FYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYV   94 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444556666677777655 58999999999999999999999999999999999776544333222  22222 212


Q ss_pred             hhc--cCCh-HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHH
Q 009469          291 VAA--RIGL-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY  367 (534)
Q Consensus       291 ~~~--~~~~-~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~  367 (534)
                      +.+  ..|. ...+++.+..|+......++.-+++.++.  ++.+.-.|-..+..++|.+++..++|.+.+ .+-...||
T Consensus        95 ~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fw  171 (412)
T PF01306_consen   95 FGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFW  171 (412)
T ss_dssp             HHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHH
Confidence            221  1133 22233334445555555566666666654  445666777788899999999999999986 44567788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009469          368 SFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWM  447 (534)
Q Consensus       368 i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~l  447 (534)
                      +.....++..++.+...++.+++.+..+...        .++++.+.+...+++|+|++|.+.+........+..+....
T Consensus       172 i~s~~~~il~lll~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf  243 (412)
T PF01306_consen  172 IASAAAIILLLLLLLLKPDVPPQAEVADALG--------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQF  243 (412)
T ss_dssp             HHHHHHHHHHHHHHSS---SSSSS-SSTTSS--------S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcCchhhhhhcccc--------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665555555544444433322211110000        00111122345678999999999998888777778777778


Q ss_pred             HHHHHHhhC---CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Q 009469          448 PTYYNQVLK---FNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM  524 (534)
Q Consensus       448 p~~~~~~~g---~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  524 (534)
                      +.|+...+.   .+....|++.+..-+..++...+..++.+|+|.|+.++         ++.+++++=....+..++++.
T Consensus       244 ~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll---------lag~i~~iRi~~~~~~~~~~~  314 (412)
T PF01306_consen  244 PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL---------LAGVIMAIRIIGSGFATNPWV  314 (412)
T ss_dssp             HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHT--SHHH
T ss_pred             HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH---------HHHHHHHHHHHHHhhhcchHH
Confidence            888876432   23456788888888888999999999999999998443         333334444444444455544


Q ss_pred             HH
Q 009469          525 AV  526 (534)
Q Consensus       525 ~~  526 (534)
                      +.
T Consensus       315 i~  316 (412)
T PF01306_consen  315 IS  316 (412)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.63  E-value=3.1e-14  Score=152.43  Aligned_cols=285  Identities=17%  Similarity=0.203  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT  286 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~  286 (534)
                      ..+.+..+..+...+....+...+..+.+.|+++..+.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34455555566666666778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhc-----------c-------C--------------------------------ChHHHHHHHHHHhhcccchhh
Q 009469          287 VLTPVAA-----------R-------I--------------------------------GLPFLLIMRAFMGIGEGVAMP  316 (534)
Q Consensus       287 ~l~~~~~-----------~-------~--------------------------------~~~~ll~~r~l~Gig~g~~~~  316 (534)
                      +++++-+           .       .                                -+..++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            8876541           0       0                                022567788999999999999


Q ss_pred             HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc------------------C-chHHHHHHHHHHHHHH
Q 009469          317 AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF------------------G-WPSVFYSFGSLGSIWF  377 (534)
Q Consensus       317 ~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~------------------g-w~~~f~i~~~~~~i~~  377 (534)
                      ...+|+-|...+++-...+|++.....+|+++|-++++++...+                  | |..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987521                  1 4445667777777777


Q ss_pred             HHHHHhhcCCCCCChhhhHHHHhhhhCCCc---ccc------ccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          378 ALWLKKAYSSPKEDPELRAEEKRHILGGSI---SKE------AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP  448 (534)
Q Consensus       378 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp  448 (534)
                      +.+++++++.++..++....+.+.......   ...      ..-....+.+++||.+...+++..+....+.++.+|+|
T Consensus       337 ~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlP  416 (735)
T KOG3626|consen  337 VPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLP  416 (735)
T ss_pred             HHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhH
Confidence            777777666655433211111111101000   000      01123467788999999999999999999999999999


Q ss_pred             HHHHHhhCCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhccc
Q 009469          449 TYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       449 ~~~~~~~g~s~~~~g~l~~~~~~-~~iig~~i~g~l~dr~g~r~  491 (534)
                      -|++.++|.++..+..+.....+ +..+|.+++|++.+|+.-+.
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~  460 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA  460 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence            99999999999999988866655 55677778999999886543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.63  E-value=3e-14  Score=142.95  Aligned_cols=186  Identities=11%  Similarity=0.051  Sum_probs=146.2

Q ss_pred             ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc----------------
Q 009469          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK----------------  359 (534)
Q Consensus       296 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~----------------  359 (534)
                      +++.+++.-++.|.|.+...+..+.++++..+++++++.+++.+.++++|..++|.+++.+...                
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            6889999999999999999999999999999999999999999999999999999999988732                


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHH
Q 009469          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG  439 (534)
Q Consensus       360 ~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~  439 (534)
                      ..|+++|++.+.+.++..+++.+......++ ++. ++...        ++.   ...+.++++|.++...+..+++...
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-~~~-~~~~~--------~~~---~~~~~~~~~~~~~l~~~~~f~yvg~  155 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQE-ADV-ARVSS--------GDT---TQKTSAFQFTHLVLGALGIFVYVGA  155 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-ccc-ccccc--------ccc---cchhhHHhhHHHHHHHHHHHHHHHH
Confidence            3689999977777665555444332111111 110 00000        000   1122356788888888888888888


Q ss_pred             HHHHHHHHHHHHHHh--hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          440 TFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       440 ~~~~~~~lp~~~~~~--~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      ..+...|++.|+.+.  +|+++.+++...+...++.++|+++++++.||+++++.+.
T Consensus       156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~  212 (310)
T TIGR01272       156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLA  212 (310)
T ss_pred             HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            999999999999864  6899999999999999999999999999999999887543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.62  E-value=1.4e-14  Score=153.60  Aligned_cols=279  Identities=11%  Similarity=0.024  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC-----CchHHHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-----GKPVLGFGVIWW  282 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l~~g~~~~  282 (534)
                      .+.++...++..+..........+.+.+++|++.++++...++..+...+-.+ +|+++||++     ||+.++++.++.
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            44455556677777633344455556778999999999999999999988666 999999997     777788887776


Q ss_pred             H-HHHHHHhhhccCCh-HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhH---HHHHHHHHHHHHHHHHHHHHHhh
Q 009469          283 S-VATVLTPVAARIGL-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS---LAFVYSGMYLGSVTGLAVSPILI  357 (534)
Q Consensus       283 ~-i~~~l~~~~~~~~~-~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~---~gi~~~~~~lG~~igp~i~~~l~  357 (534)
                      . ++...++..+  +. ....+..++.+++.+....+.-++..|..+ +++...   .++......+|.++|+.++|.+.
T Consensus       106 ~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       106 SAILYGLLPGKV--SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            3 4333333333  33 344457889999999999999999999997 555443   33444455689999999999999


Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHhhcCCCC-CChhhhHHHH---hhhhCCCccccccccccHHHhhcchhHHHHHHHH
Q 009469          358 QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK-EDPELRAEEK---RHILGGSISKEAVSVIPWKLILSKAPVWALIISH  433 (534)
Q Consensus       358 ~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~  433 (534)
                      +.++|+..|++.+++.++..+..++ .++++. ..+...+.+.   ..................+..+++|.++...+..
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~-~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fi  261 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNL-SKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFI  261 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHh-cccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            9999999999988887776443333 343320 1110000000   0000000000000112344457778887766655


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          434 FC-HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       434 ~~-~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      ++ ..........+ -.+..+.+|+++...|++.....++.+++..+.+++.+|++.|+.
T Consensus       262 fl~~~~~~~~~~~~-f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~  320 (468)
T TIGR00788       262 FLSYANLPGASGSV-FCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL  320 (468)
T ss_pred             HHHHhhcCCCCcee-EEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence            55 22221111111 113334589999999999999999999999999999889988764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.61  E-value=5.9e-19  Score=186.64  Aligned_cols=277  Identities=18%  Similarity=0.202  Sum_probs=184.3

Q ss_pred             HHHHHHhhhhHHHHhHHHHH--hhhCCCc---------chhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          215 AFLLCNMDRVNMSIAILPMS--KEFNWNS---------TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~--~~~g~s~---------~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      +.+..+++...++...+...  ..+..+.         .+.+++.+...++..+|++++|+++||+|||+.+.++.++..
T Consensus         8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~   87 (451)
T PF00083_consen    8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI   87 (451)
T ss_pred             HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence            34566666666655554433  2222222         246889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccC-ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-
Q 009469          284 VATVLTPVAARI-GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-  361 (534)
Q Consensus       284 i~~~l~~~~~~~-~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-  361 (534)
                      ++.++.++++.. +++.++++|++.|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+....+ 
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  167 (451)
T PF00083_consen   88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDN  167 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999988733 678899999999999999999999999999999999999999999999999998888766644344 


Q ss_pred             --chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhh-HHHHhh--------------hhCCCc--cccccccccHHHhhc
Q 009469          362 --WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR-AEEKRH--------------ILGGSI--SKEAVSVIPWKLILS  422 (534)
Q Consensus       362 --w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~--~~~~~~~~~~~~ll~  422 (534)
                        ||+.+++.+++.++..+.. .+.||.|+--.... .++.++              ..+...  ++.......++++++
T Consensus       168 ~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  246 (451)
T PF00083_consen  168 WGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFR  246 (451)
T ss_pred             ccccccccccccccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence              9999888777776554444 44555543211000 000000              000000  000001133555665


Q ss_pred             chh----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          423 KAP----VWALIISHFCH-NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       423 ~~~----~~~~~l~~~~~-~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                      ++.    +........+. ..+......|.+.++++ .+.+..  -.......+...++.+++.++.||+|||++++.
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~  321 (451)
T PF00083_consen  247 NKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLII  321 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccccccccccccc
Confidence            532    22222222222 23334455566666655 566655  223334456666777777899999999986654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.59  E-value=2.4e-13  Score=139.98  Aligned_cols=271  Identities=16%  Similarity=0.123  Sum_probs=206.6

Q ss_pred             HHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hCCc-hHHHHHHHHHHHHH
Q 009469          213 FSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGK-PVLGFGVIWWSVAT  286 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr----~Grr-~~l~~g~~~~~i~~  286 (534)
                      .+.-+............+.. +.+.+|+++..+|.++.+.-+.-++.-|+.|.++||    +||+ +.++++.+..++..
T Consensus        18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~   97 (467)
T COG2211          18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVA   97 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHH
Confidence            33344444444444444444 678889999999999999999999999999999996    6764 56778888888888


Q ss_pred             HHHhhhcc----CChHHHHHHHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 009469          287 VLTPVAAR----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQ---  358 (534)
Q Consensus       287 ~l~~~~~~----~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~---  358 (534)
                      +++..+++    ......++.-++.+++......+..++.+++.+ ++||.+..++-..+..+|..+...+.+.+..   
T Consensus        98 ~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g  177 (467)
T COG2211          98 VLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG  177 (467)
T ss_pred             HHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88887763    234556677788899999988899999999885 6889999999998888887766666555543   


Q ss_pred             ----ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHH
Q 009469          359 ----KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF  434 (534)
Q Consensus       359 ----~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~  434 (534)
                          ..||+...++.+++..+..+++++..+|+..+....++..+           ......+..+++|+++...++..+
T Consensus       178 ~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~-----------~~~~~~~~~~~~Nrp~~~~l~~~l  246 (467)
T COG2211         178 GGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK-----------LKLKDSFLLIFKNRPLLLLLLMNL  246 (467)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc-----------ccHHHHHHHHHccchHHHHHHHHH
Confidence                34788888888888888888888877776653322111000           001123446789999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       435 ~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +...+.........+|.+..+|.+.............+.+++.++..++.+|+|+|++..
T Consensus       247 ~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~  306 (467)
T COG2211         247 LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL  306 (467)
T ss_pred             HHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence            888888888888888888888888888888888888888888999999999999998655

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.58  E-value=2.3e-16  Score=168.56  Aligned_cols=284  Identities=15%  Similarity=0.227  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      +.++++++...+ ..+....+...+..+++.|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-+|.++.+++
T Consensus         3 ~fl~~~~~~~~~-q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g   81 (539)
T PF03137_consen    3 WFLVFLCLLGLF-QMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG   81 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ehHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence            344444444333 3666667778888999999999999999999999999999999999999988888888999999998


Q ss_pred             HHHHhhhc----c--------------------------------------------CChHHHHHHHHHHhhcccchhhH
Q 009469          286 TVLTPVAA----R--------------------------------------------IGLPFLLIMRAFMGIGEGVAMPA  317 (534)
Q Consensus       286 ~~l~~~~~----~--------------------------------------------~~~~~ll~~r~l~Gig~g~~~~~  317 (534)
                      .+++++-+    .                                            .-+..++++.++.|+|.+..++.
T Consensus        82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL  161 (539)
T PF03137_consen   82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL  161 (539)
T ss_dssp             ----------------------------------------------------------------------SSS-------
T ss_pred             HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence            88765321    0                                            01356788999999999999999


Q ss_pred             HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------C-chHHHHHHHHHHHH
Q 009469          318 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF---------------------G-WPSVFYSFGSLGSI  375 (534)
Q Consensus       318 ~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~---------------------g-w~~~f~i~~~~~~i  375 (534)
                      ..+|+-|..++++-+..+|++++...+|+++|-++++.+...+                     | |..-|++.+++.++
T Consensus       162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876421                     1 44445566666666


Q ss_pred             HHHHHHHhhcCCCCCChhhhHH---H-Hh--h-hhCCCcc--------ccccccccHHHhhcchhHHHHHHHHHHHHHHH
Q 009469          376 WFALWLKKAYSSPKEDPELRAE---E-KR--H-ILGGSIS--------KEAVSVIPWKLILSKAPVWALIISHFCHNWGT  440 (534)
Q Consensus       376 ~~i~~~~~~~~~~~~~~~~~~~---~-~~--~-~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~  440 (534)
                      ..+.++.++++.|...+..+..   + +.  . .......        .-+.-....+.+++||.+....++..+.....
T Consensus       242 ~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~  321 (539)
T PF03137_consen  242 SAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIV  321 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            6666666666554441110000   0 00  0 0000000        01112345677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 009469          441 FILLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSK  490 (534)
Q Consensus       441 ~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~-~~iig~~i~g~l~dr~g~r  490 (534)
                      .++.+++|-|++.+++.++..+.++.....+ ++++|.+++|++.+|++-+
T Consensus       322 ~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  322 SGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            9999999999999999999999888766655 6778888999999998644

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.57  E-value=7.4e-12  Score=132.16  Aligned_cols=244  Identities=16%  Similarity=0.079  Sum_probs=183.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH-HHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHH
Q 009469          243 TVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM  321 (534)
Q Consensus       243 ~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~  321 (534)
                      ..++..++..+..++..|+.|.++|+-|+||.++ +..++..++.+++.+....+++...+.-++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999998776654 444555556666666543346555566666667777888899999


Q ss_pred             HhhhccCCcc--------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhccc--------CchHHHH
Q 009469          322 LSKWIPVSER--------------------------SRSLAFVYSGMYLGSVTGLAVSPILIQKF--------GWPSVFY  367 (534)
Q Consensus       322 i~~~~~~~~r--------------------------g~~~gi~~~~~~lG~~igp~i~~~l~~~~--------gw~~~f~  367 (534)
                      +.+..+++++                          ++..+.-.+..++|+++.-++.-.+....        +.|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          89999988888899888877766654322        2477788


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCChh--hhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 009469          368 SFGSLGSIWFALWLKKAYSSPKEDPE--LRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT  445 (534)
Q Consensus       368 i~~~~~~i~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~  445 (534)
                      +.++..++..+..++..|+++++.+.  ....-....        ..-...++++.+.|....+.++.+++.-+...+..
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~--------~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~  302 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF--------KRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS  302 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH--------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777777777777776552111  111100000        00113456677788999999999999999999999


Q ss_pred             HHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cchH
Q 009469          446 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLSI  494 (534)
Q Consensus       446 ~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r--~~~i  494 (534)
                      ....|.++.+|++..+...+..+..+.+++|.++.|++.||+|.|  +.++
T Consensus       303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~  353 (477)
T PF11700_consen  303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL  353 (477)
T ss_pred             HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            999999999999999999999999999999999999999999998  5443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.54  E-value=6.3e-14  Score=122.18  Aligned_cols=136  Identities=26%  Similarity=0.458  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhcc
Q 009469          248 QSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP  327 (534)
Q Consensus       248 ~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~  327 (534)
                      .+.+.++..++.++.|++.||+|||+.+..+.++..++.++..+..  +++.+++.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3456778889999999999999999999999999998888888777  78888999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469          328 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       328 ~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      +++|++++++......+|..++|.+.+.+.+..+|++.+++.+++.++..+..+...+
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP  139 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999888777766666555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.53  E-value=6.4e-12  Score=124.24  Aligned_cols=248  Identities=14%  Similarity=0.145  Sum_probs=169.5

Q ss_pred             hhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHH
Q 009469          222 DRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLL  301 (534)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll  301 (534)
                      .....++..-.+-+++|++..+++.++........+..++.|.++||+|||+.-++.+++++++++... .+  +++.++
T Consensus        49 aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~--~~~~L~  125 (354)
T PF05631_consen   49 ADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SS--NYPVLL  125 (354)
T ss_pred             HHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-cc--ccHHHH
Confidence            334455555555578999999999999999999999999999999999999999999999998886443 34  799999


Q ss_pred             HHHHHHhhcccchhhHHHHHH-hhhc----cCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHH
Q 009469          302 IMRAFMGIGEGVAMPAMNNML-SKWI----PVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGSLG  373 (534)
Q Consensus       302 ~~r~l~Gig~g~~~~~~~~~i-~~~~----~~~~rg~~~gi~~-~~~~lG~~igp~i~~~l~~~~gw--~~~f~i~~~~~  373 (534)
                      ++|++.|++.+..+.+--++. .|.-    |++..+.-++... ...++-.+++.+++.++.+..+.  .++|.....+.
T Consensus       126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l  205 (354)
T PF05631_consen  126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL  205 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            999999999999988887754 3432    2222233333332 23344455566666666665544  67787766666


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          374 SIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ  453 (534)
Q Consensus       374 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~  453 (534)
                      ++..++.....++...+..+..+..+.            -...++.+++||+++.+.+...+.....+.+....++.++.
T Consensus       206 ~~~~~~I~~~W~ENyg~~~~~~~~~~~------------~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~  273 (354)
T PF05631_consen  206 AVAAVLILKTWPENYGDTSSSSSLSGS------------FREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDP  273 (354)
T ss_pred             HHHHHHHHhcccccCCCcccccchHHH------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecC
Confidence            666655554444433221111110000            01235667889999999999999988887776644333332


Q ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          454 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADT  486 (534)
Q Consensus       454 ~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr  486 (534)
                        +-...-.|++++.+.+..++|+.+..++..+
T Consensus       274 --~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  274 --DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             --CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence              1123457899999999999999988765543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.53  E-value=2.3e-13  Score=142.54  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=133.6

Q ss_pred             HHhHHHHHhhhCCCc--------chhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhcc--CC
Q 009469          227 SIAILPMSKEFNWNS--------TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR--IG  296 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~--------~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~--~~  296 (534)
                      ....+.+.++.|.++        ...+.+.++..++..++.++.|+++||+|+|+++.++.++.+++..+......  .+
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~  307 (418)
T TIGR00889       228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFG  307 (418)
T ss_pred             HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence            344455556666443        56799999999999999999999999999999999999999888766665321  12


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhcc------cCchHHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQK------FGWPSVFYSF  369 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~lG~~igp~i~~~l~~~------~gw~~~f~i~  369 (534)
                      ++.+++..++.|++.+...+....++.+++|+++|++++|+.+ ....+|.++||+++|.+.++      +||+++|++.
T Consensus       308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~  387 (418)
T TIGR00889       308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFF  387 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            4566778999999998888888999999999999999999997 57889999999999999987      4699999998


Q ss_pred             HHHHHHHHHHHHHhhcCCC
Q 009469          370 GSLGSIWFALWLKKAYSSP  388 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~  388 (534)
                      +++.++..++.+++.+++.
T Consensus       388 ~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       388 AGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHHhCCcc
Confidence            8888887777777776553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.52  E-value=2.4e-13  Score=139.25  Aligned_cols=150  Identities=12%  Similarity=0.080  Sum_probs=127.7

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      ....+.+.++++.+..+.+++.+++.++..++.++.|++.||+|||+.+.++.++..++.++..+.+..+...+++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            34455566788999889999999999999999999999999999999999999888888877776653223334556777


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~  376 (534)
                      .|++.+...+....++.|.+|+++|++++|+......+|..++|.+.+.+.+..||++.|++.+++.++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            8888887777888899999999999999999999999999999999999999999999998877766554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.52  E-value=3.2e-12  Score=130.68  Aligned_cols=178  Identities=21%  Similarity=0.317  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHH-hHHHHHhhhC----CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSI-AILPMSKEFN----WNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVI  280 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g----~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~  280 (534)
                      +.+..++..-+..-+.++.+.. .+.++..+++    ++.++..-+.+.|.....+.++++|+++||+ |+|+++++|.+
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            3444555566666555554443 4445566666    9999999999999988899999999999995 99999999999


Q ss_pred             HHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCC--cchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          281 WWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS--ERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       281 ~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~--~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      ++++|.++.+.+...+...++++-++.++|.|..-+...++++|.+|++  +|-.++++++++.++|+.++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999998874124667888888899999999999999999999864  47788999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhh
Q 009469          359 KFGWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       359 ~~gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      .+||...|-+.++-..+.++..+...
T Consensus       181 ~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         181 NYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999988877776666655544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.51  E-value=1.7e-12  Score=135.08  Aligned_cols=159  Identities=19%  Similarity=0.202  Sum_probs=131.0

Q ss_pred             HHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 009469          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       226 ~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~  305 (534)
                      .....+.+..+.|.  ...++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.+  +.+.+++..+
T Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  310 (399)
T PRK05122        235 IATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALIGAA  310 (399)
T ss_pred             HHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence            33444554455565  3456777888889999999999999999999999998888888887777776  6777788889


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      +.|++.+..++.....+.+.+|+++|++++|+++....+|..+++.+.+.+.+..||++.|++.+++.++..++.+...+
T Consensus       311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998888888888899999999999999999999999999999999999999999999888877776666555544


Q ss_pred             CCC
Q 009469          386 SSP  388 (534)
Q Consensus       386 ~~~  388 (534)
                      +++
T Consensus       391 ~~~  393 (399)
T PRK05122        391 RAP  393 (399)
T ss_pred             ccc
Confidence            433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.50  E-value=3.2e-12  Score=132.04  Aligned_cols=255  Identities=17%  Similarity=0.208  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhh--hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKE--FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVIW  281 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~g~~~  281 (534)
                      +|+.+.++.+..++.....+++.+..-++.++  .+.+.+..||+.++..++..++++.+|++..|.+. |+.+++|.++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI  111 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence            48888888888888888877777665556666  67788889999999999999999999999999996 8889999999


Q ss_pred             HHHHHHHH-hhh--ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          282 WSVATVLT-PVA--ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       282 ~~i~~~l~-~~~--~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      .+++.++. ++.  ++...+.++++|++.|+|.|. ....-+++++....++|.++++....+..+|.++||.+...+..
T Consensus       112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            99999988 333  222467899999999999775 47788999998889999999999999888888888888776653


Q ss_pred             c--cC-----------chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchh
Q 009469          359 K--FG-----------WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP  425 (534)
Q Consensus       359 ~--~g-----------w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  425 (534)
                      -  -|           +..+-|+.+++.++.+++.....+|..+...+...+...+ .....+.......+      ...
T Consensus       191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d------~~~  263 (488)
T KOG2325|consen  191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEE-EKSDIEKVKKPKLD------WVA  263 (488)
T ss_pred             hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchh-hccchhhhccCChh------HHH
Confidence            1  11           2345566676766666666666565443332221111000 00000000000111      112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Q 009469          426 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCV  467 (534)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~  467 (534)
                      .+...+..+...+......+..+.+....++++..++.....
T Consensus       264 ~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~g  305 (488)
T KOG2325|consen  264 VLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNG  305 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhh
Confidence            334444445555555555666666777778887666544333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.49  E-value=3.2e-12  Score=136.86  Aligned_cols=172  Identities=14%  Similarity=0.132  Sum_probs=124.3

Q ss_pred             HHHHhhhhHHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH-Hhhhcc
Q 009469          217 LLCNMDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL-TPVAAR  294 (534)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l-~~~~~~  294 (534)
                      ++.....+.+....|.+. +++|.+..+.++......++..++.++.|+++||+|||+++.++.++..++.+. ......
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  339 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS  339 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333344445555666654 667998888888888889999999999999999999999988887654433322 222222


Q ss_pred             CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHH
Q 009469          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLG  373 (534)
Q Consensus       295 ~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~-gw~~~f~i~~~~~  373 (534)
                      .+...+++++++.|++.+........++.+++|++.|++++|+.+....+++.++|.+.+++.+.. +|+..+++..+..
T Consensus       340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~  419 (490)
T PRK10642        340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA  419 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            256677888888888777777778888999999999999999866666677889999999988765 4676666655555


Q ss_pred             HHHHHHHHHhhcCCCC
Q 009469          374 SIWFALWLKKAYSSPK  389 (534)
Q Consensus       374 ~i~~i~~~~~~~~~~~  389 (534)
                      ++.++..++ .+++++
T Consensus       420 ~i~~~~~~~-~pes~~  434 (490)
T PRK10642        420 VIGLITGVT-MKETAN  434 (490)
T ss_pred             HHHHHHHHH-hccccC
Confidence            554444443 355443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=3.6e-12  Score=132.47  Aligned_cols=154  Identities=12%  Similarity=0.107  Sum_probs=123.5

Q ss_pred             HHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          226 MSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       226 ~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      +....|. +.+++|++..+.+++.+...+...++.+++|+++||+|+|+.+..+.+...+........+  +.+.+++.+
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~  312 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--SPAILLGLQ  312 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            3344554 4677899999999988888888888999999999999999988877666655554444455  566777888


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK  382 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~  382 (534)
                      ++.+++.+...+....+..|.+| ++|++++++++....+|..++|.++|.+.+.+||++.|++.+++.++.+++.+.
T Consensus       313 ~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        313 LLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            88888777777777788899996 469999999999999999999999999999999999998877766665555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.48  E-value=1.8e-11  Score=122.86  Aligned_cols=247  Identities=13%  Similarity=0.108  Sum_probs=176.8

Q ss_pred             HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC-----CchHH-HHHHHHHHHHHHHHhhhc----c-------C
Q 009469          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-----GKPVL-GFGVIWWSVATVLTPVAA----R-------I  295 (534)
Q Consensus       233 ~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l-~~g~~~~~i~~~l~~~~~----~-------~  295 (534)
                      +..|++++...++.+.++..+... ..+.+|..+|+.+     ||..+ ..|.++.+.+..+.+++.    .       .
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            456889999999999998888765 6889999999998     77554 455666655555544331    1       1


Q ss_pred             Ch-H--HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH---H
Q 009469          296 GL-P--FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS---F  369 (534)
Q Consensus       296 ~~-~--~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i---~  369 (534)
                      .+ +  ...+...+.|+|.+...++..++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+.-.-...+   .
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            11 2  2345566779999999999999999999999999999999999999999999999999887764333222   2


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      +++.++..++..+..+++.+.....           ..+++......++++..+|....+.+..++...+++.-...+-+
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~-----------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEP  233 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAA-----------AERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEP  233 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccC-----------CCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCC
Confidence            2222222222222222211111100           00111112235677788999988888888888888888888888


Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Q 009469          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD-TLVSKG  491 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~d-r~g~r~  491 (534)
                      |--+.+|++..+...+......+.+++..+.|++.. |.++++
T Consensus       234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~  276 (403)
T PF03209_consen  234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR  276 (403)
T ss_pred             chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence            999999999999999999999999999999998876 445544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.48  E-value=1.1e-12  Score=137.42  Aligned_cols=148  Identities=11%  Similarity=0.088  Sum_probs=128.7

Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhh
Q 009469          237 FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMP  316 (534)
Q Consensus       237 ~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~  316 (534)
                      .+.+..++|++.++..++..++.+++|++.||+|+|+.+.++.++.+++.++.++++  +.+.+++.+++.|++.+...+
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~l~g~~~~~~~~  334 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSILKLLHAFEVPFLLV  334 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence            366777889999999999999999999999999999999999999998888888877  677888889999998888778


Q ss_pred             HHHHHHhhhccCCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcC
Q 009469          317 AMNNMLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       317 ~~~~~i~~~~~~~~rg~~~gi-~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      ....++.+.+|++.|++..+. ++....+|.+++|.+.|++.+.+||+..|++.+++.++..++.+...++
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888999999999999888765 6677889999999999999999999999999888877766666655554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.47  E-value=2.8e-12  Score=141.52  Aligned_cols=135  Identities=13%  Similarity=0.093  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhh
Q 009469          246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW  325 (534)
Q Consensus       246 ~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~  325 (534)
                      +...+..++.+++.++.|+++||+|||++++++.++.+++.+++++.+  +...+++.+++.|++.++.+++..++++|+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566788899999999999999999999999999999999888887  666778888888888888889999999999


Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          326 IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       326 ~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      +|+++|++++|+.+++..+|.++||++++.+... +...+|++.+++.++.+++.+++
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999988764 34566776666666555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12382 putative transporter; Provisional

Probab=99.47  E-value=4.2e-12  Score=131.77  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=129.9

Q ss_pred             HHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          225 NMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       225 ~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      ......+.+.++.+.+  ..++....+.++..++.++.|++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  309 (392)
T PRK12382        234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALAGA  309 (392)
T ss_pred             HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHHHH
Confidence            3444455555556654  356667778888889999999999999999999999988888888777766  677778888


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      ++.|++.+...+...+.+.+.+|+++||+++|+++....+|..++|.+.+.+.++.||++.|++.+++.++..++.+..
T Consensus       310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999998888888888999999999999999999999999999999999999999999999999888777766665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=2.2e-12  Score=134.42  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=129.7

Q ss_pred             HHHHhHHHHHhhhCCCcc----hhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          225 NMSIAILPMSKEFNWNST----TVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       225 ~~~~~~~~~~~~~g~s~~----~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      ...+..+.+..+.+.+..    ..+++.++..++..++.+++|++.||+|||+.+.++.++..++.+...+.+  +.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  314 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQL  314 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHH
Confidence            344455555444433333    245666677788889999999999999999999999888887777776666  67778


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~  380 (534)
                      ++.+++.|++.+...+...+.+.+..|+++||+.++++.....+|..+||.++|.+.+..||++.|++.+++.++..++.
T Consensus       315 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        315 GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999988877776666


Q ss_pred             HHhhc
Q 009469          381 LKKAY  385 (534)
Q Consensus       381 ~~~~~  385 (534)
                      +...+
T Consensus       395 ~~~~~  399 (408)
T PRK09874        395 WNSLR  399 (408)
T ss_pred             HHHHH
Confidence            55443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.45  E-value=4.1e-12  Score=128.62  Aligned_cols=162  Identities=23%  Similarity=0.385  Sum_probs=143.0

Q ss_pred             HHHhhhhHHHHhHHHHHhhh-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCch-HHHHHHHHHHHHHHHHhhhccC
Q 009469          218 LCNMDRVNMSIAILPMSKEF-NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP-VLGFGVIWWSVATVLTPVAARI  295 (534)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~-~l~~g~~~~~i~~~l~~~~~~~  295 (534)
                      .............+.+.++. |.+..+.+++.+...++..++.++.|++.||+|+|+ .+.++.++..++.++....+  
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  263 (352)
T cd06174         186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP--  263 (352)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc--
Confidence            33444455555666665554 899999999999999999999999999999999999 99999999999999888877  


Q ss_pred             ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q 009469          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (534)
Q Consensus       296 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i  375 (534)
                      +.+.+++..++.|++.+...+...+++.|..|+++|++.+|+......+|..++|.+.+.+.+..+|++.+++.+++.++
T Consensus       264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i  343 (352)
T cd06174         264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL  343 (352)
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHH
Q 009469          376 WFALWL  381 (534)
Q Consensus       376 ~~i~~~  381 (534)
                      ..++..
T Consensus       344 ~~i~~~  349 (352)
T cd06174         344 AALLLL  349 (352)
T ss_pred             HHHHhe
Confidence            666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.45  E-value=4.2e-12  Score=132.32  Aligned_cols=156  Identities=13%  Similarity=0.025  Sum_probs=127.0

Q ss_pred             HHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          225 NMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       225 ~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      ......|.+.++.|.+..+.+++.+...++..++.++.|++.||+|+|+.+.++.+...++.++..+.+  +.+.+.+..
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  315 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLAG  315 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            344456777778899999999999999999999999999999999999998887777777666666665  566677777


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHHHHH
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWLK  382 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~  382 (534)
                      ++.|++.+...+...+++.+.+|+++|++++|+.+....+|..+||.++|.+.++.+ |...+++.+...++..++.+.
T Consensus       316 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        316 FAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            888888877888889999999999999999999999999999999999999988754 555565555454444444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=5.7e-12  Score=134.04  Aligned_cols=169  Identities=12%  Similarity=0.037  Sum_probs=123.5

Q ss_pred             HHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      ..++............|. +.+++|++..+.++..+...++..++.+++|+++||+|+|+.++....+..++..+..+..
T Consensus       266 ~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~  345 (467)
T PRK09556        266 ANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH  345 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh
Confidence            333333344445555665 5577999999999999999999999999999999999999887665544444332222222


Q ss_pred             cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhc------------cc
Q 009469          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQ------------KF  360 (534)
Q Consensus       294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~------------~~  360 (534)
                      ..+...+.+..++.|++.............|.+|+++||++.|+.+....+ |..++|.+.|++.+            ..
T Consensus       346 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~  425 (467)
T PRK09556        346 ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT  425 (467)
T ss_pred             cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc
Confidence            225555667778888654444444456777999999999999999988886 77999999999999            57


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHh
Q 009469          361 GWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       361 gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      ||+..|++.++..++..++.+..
T Consensus       426 ~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        426 GWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH
Confidence            89999988877766655554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.43  E-value=2e-12  Score=133.24  Aligned_cols=160  Identities=12%  Similarity=0.168  Sum_probs=121.3

Q ss_pred             HHHHHHhhhhHHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH--HHHhh
Q 009469          215 AFLLCNMDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT--VLTPV  291 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~--~l~~~  291 (534)
                      ..+.............|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..+..  ++..+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555666654 7789999999999999999999999999999999999998775554443332  22222


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHH-HHHHHHHHHHHHHHHHHhhcccC-chHHHHHH
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFG-WPSVFYSF  369 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~-~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~  369 (534)
                      ....+.+.+++..++.|++.+...+...+++.|.+|+++|++++++. ..+..+|..++|.+++.+.++.| |++.++..
T Consensus       307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence            22225666677778888888888899999999999999999999984 45667899999999999999988 88777665


Q ss_pred             HHHHH
Q 009469          370 GSLGS  374 (534)
Q Consensus       370 ~~~~~  374 (534)
                      ++..+
T Consensus       387 ~~~~l  391 (394)
T TIGR00883       387 AALAL  391 (394)
T ss_pred             HHHHH
Confidence            54443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.42  E-value=1.3e-11  Score=128.05  Aligned_cols=152  Identities=14%  Similarity=0.067  Sum_probs=122.2

Q ss_pred             HHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH-HhhhccCChHHHHHHHHHHh
Q 009469          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL-TPVAARIGLPFLLIMRAFMG  308 (534)
Q Consensus       230 ~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l-~~~~~~~~~~~ll~~r~l~G  308 (534)
                      .+.+.+++|.+..+.+++.+...++..++.++.|++.||+|+|+++. +..+..++.+. ....+  +.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAAN--SEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhc--hHHHHHHHHHHHH
Confidence            34456668999999999999999999999999999999999886544 44444444333 33444  5677778888999


Q ss_pred             hcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469          309 IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       309 ig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      ++.+...+.....+.+..| ++|++++|++.....+|..+||+++|.+.+++|++..|++.+++.++..++.....+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9887777777788888875 689999999999999999999999999999999999999988888776666655544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.42  E-value=1.3e-11  Score=126.90  Aligned_cols=147  Identities=12%  Similarity=0.103  Sum_probs=122.7

Q ss_pred             HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcc
Q 009469          232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE  311 (534)
Q Consensus       232 ~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~  311 (534)
                      .+.+++|.++.+.+++.+...+...++.++.|++.||+|+|+++.++.++..+..+...+.+  +.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            34677899999999988888777888899999999999999998888777666655555555  5677778888999988


Q ss_pred             cchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 009469          312 GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       312 g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                      +...+....++.|..|+ ++++++++++....+|..++|.+++.+.+..||+..|++.+++.++..++..
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            88888888899999865 6779999999999999999999999999999999999988877766655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.41  E-value=3.6e-12  Score=133.54  Aligned_cols=159  Identities=14%  Similarity=0.032  Sum_probs=134.5

Q ss_pred             HHHhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          226 MSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       226 ~~~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      +....|.+.++ +|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.+  +++.++++.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~  319 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCL  319 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHH
Confidence            34455666555 899999999999999999999999999999998888888888888888877777766  677777888


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      ++.|++.+...+...+++.+.+|++.||+++|++.....+|..+||.+.|.+.+.+|++..+++.++..++..++.....
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhc
Confidence            88899888777778899999999999999999999999999999999999999999999888888877766666655554


Q ss_pred             cC
Q 009469          385 YS  386 (534)
Q Consensus       385 ~~  386 (534)
                      ++
T Consensus       400 ~~  401 (417)
T PRK10489        400 GE  401 (417)
T ss_pred             cc
Confidence            43

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.41  E-value=9.5e-11  Score=117.49  Aligned_cols=244  Identities=17%  Similarity=0.060  Sum_probs=184.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhCCch-HHHHHHHHHHHHHHHHhhhcc-CChHHHHHHHHHHhhcccchhhHHH
Q 009469          242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP-VLGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMN  319 (534)
Q Consensus       242 ~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~-~l~~g~~~~~i~~~l~~~~~~-~~~~~ll~~r~l~Gig~g~~~~~~~  319 (534)
                      +..+...++..+...+..|+.|.++|..|+|| .+-+..++..++.+++.+.+. ..++..++.-++..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            45678888999999999999999999999665 455666666677777777774 3456667777888888888899999


Q ss_pred             HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH--Hh-h---------------cccCchHHHHHHHHHHHHHHHHHH
Q 009469          320 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP--IL-I---------------QKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       320 ~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~--~l-~---------------~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                      +++.+..++++-++..++-.....+|+.+.-++.-  .+ .               +...-|.++.+.++..++..+..+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            99999999988888888877777777766655431  11 1               122357777777777777777777


Q ss_pred             HhhcCCCCCC-hhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 009469          382 KKAYSSPKED-PELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT  460 (534)
Q Consensus       382 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~  460 (534)
                      ...++.++.. +....-...         -+.-...++++.+++.+..+.++.+++.=+..........|....+|++..
T Consensus       218 ~~v~~~~~~~~~~~~~l~~g---------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         218 LNVHDAEKISSPPPTALRNG---------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             hcccccccccccchHHHHHH---------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            7766655322 110000000         000123467788888899999999998889999999999999988999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 009469          461 ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI  494 (534)
Q Consensus       461 ~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i  494 (534)
                      +..++.....+.+++|.++.|++.||+|.|+++.
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~  322 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM  322 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh
Confidence            9999999999999999999999999999997654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=5.6e-12  Score=135.04  Aligned_cols=151  Identities=12%  Similarity=0.142  Sum_probs=117.9

Q ss_pred             HHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          226 MSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       226 ~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      ....+|.+. +++|++..+.+++.+...++..++.++.|+++||+|+|+++.++.++..+..++.......+.+.+.+..
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            445566665 5889999999999999999999999999999999999999888877766665544433322344444445


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~  376 (534)
                      ++.++......+...+++.+.+|+++|++++|+++....+|..+||+++|.+.+.+||++.+.+.+....+.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~  445 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV  445 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            554443334456677889999999999999999999999999999999999999999998887665544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=1.7e-11  Score=126.10  Aligned_cols=163  Identities=17%  Similarity=0.048  Sum_probs=116.0

Q ss_pred             HHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCch--HHHH------HHHHHHHHH
Q 009469          216 FLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP--VLGF------GVIWWSVAT  286 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~--~l~~------g~~~~~i~~  286 (534)
                      .++.......+....|.+ .+++|.+..+.+++.+...++..++.+++|+++||+|||+  ....      +.++..+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM  303 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            333344444455555554 5668999999999999999999999999999999999996  1111      111111111


Q ss_pred             HHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHH
Q 009469          287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSV  365 (534)
Q Consensus       287 ~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~  365 (534)
                      +.....+  +.+..+...++.+++.+ ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..| |++.
T Consensus       304 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~  380 (399)
T TIGR00893       304 FATNYVN--IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA  380 (399)
T ss_pred             HHhccch--hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHH
Confidence            1111111  23333333334444444 788999999999999999999999999999999999999999999988 9999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009469          366 FYSFGSLGSIWFALWL  381 (534)
Q Consensus       366 f~i~~~~~~i~~i~~~  381 (534)
                      |++.+++.++..++.+
T Consensus       381 ~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       381 LMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888877766655543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.40  E-value=1.5e-11  Score=127.29  Aligned_cols=155  Identities=11%  Similarity=0.011  Sum_probs=134.3

Q ss_pred             hhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      .....+....|.+.+++|.+..++|++.++..++..++.++.+++.||+|.|+.+.++.++..+..++.++++  +.+.+
T Consensus       219 ~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~  296 (382)
T TIGR00902       219 GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--AFPLI  296 (382)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--hHHHH
Confidence            3344444556666677999999999999999999999999999999999999999999999999999988887  78888


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL  379 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~  379 (534)
                      ++..++.|+..+...+....++.+. |+++|+++.++++ ...++|.++||.++|++.+++|+ ..|++.+++.++..++
T Consensus       297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 8999999999986 47789999999999999999986 6677777776654433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.40  E-value=7.2e-12  Score=132.59  Aligned_cols=181  Identities=13%  Similarity=0.108  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT  286 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~  286 (534)
                      ..+...++..+.............|.+.+++|.+..+.++......++..++.+++|+++||+|||+.+.++.++.+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33333344444444444455566778888899999888999999999999999999999999999999999888888777


Q ss_pred             HHHhh---hccC------ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          287 VLTPV---AARI------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (534)
Q Consensus       287 ~l~~~---~~~~------~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~  357 (534)
                      +++++   ....      ++..+....++.+.......+....++.|.+|+++|++++++......+|.+++|.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66652   1111      12222222233222222334566677899999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHhhcCC
Q 009469          358 QKFGWPSVFYSFGSLGSIWFALWLKKAYSS  387 (534)
Q Consensus       358 ~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~  387 (534)
                      ++.+|++.|++.++++++..++.++..++.
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecccC
Confidence            999999999998888877777666555543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.39  E-value=2.2e-11  Score=126.04  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=124.9

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      ...+|.+.++.|.+..+++++.++..++..++.++.|++.||+|+|+++..+.++..++.+...  .  . ..++...++
T Consensus       220 ~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~--~-~~~~~~~~l  294 (381)
T PRK03633        220 YGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S--Q-AAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h--h-HHHHHHHHH
Confidence            3456777777899999999999999999999999999999999999999888888777665443  2  1 223456677


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      .|++.....+...+.+.|..|+++++.+.+.+....++|..+||.++|++.+++||++.|++.+.+.++..+..++.
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            78777777889999999999888888888888889999999999999999999999999998888777665554444

>PRK03699 putative transporter; Provisional

Probab=99.38  E-value=3.2e-11  Score=125.41  Aligned_cols=158  Identities=13%  Similarity=0.162  Sum_probs=127.5

Q ss_pred             hhhHHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          222 DRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       222 ~~~~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      ....+....|.+. +++|++..+.+++.+.+.++..++.++.|+++||+++|+++....++.++..++....+  +.+.+
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~  297 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--DPSHL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--CchHH
Confidence            3334445566654 67899999999999999999999999999999999999998888777777666665555  55556


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~  380 (534)
                      .+..++.|++.+..++...++..+..| +++++..+.......+|..++|.+.|++.+..||+..+++.+++.++..+..
T Consensus       298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        298 LYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            667788888877777887888888774 5578888998889999999999999999999999999998887776665544


Q ss_pred             HH
Q 009469          381 LK  382 (534)
Q Consensus       381 ~~  382 (534)
                      +.
T Consensus       377 ~~  378 (394)
T PRK03699        377 IL  378 (394)
T ss_pred             HH
Confidence            43

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.37  E-value=2.8e-11  Score=128.26  Aligned_cols=164  Identities=12%  Similarity=0.043  Sum_probs=112.9

Q ss_pred             hhhHHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--CCchHH-HHHHHHHHHHHHHHhhhccCCh
Q 009469          222 DRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVL-GFGVIWWSVATVLTPVAARIGL  297 (534)
Q Consensus       222 ~~~~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l-~~g~~~~~i~~~l~~~~~~~~~  297 (534)
                      ..+.....+|.+. +++|.+..+.+++..++.++..++.++.|+++||+  +||+.. +....+..++.++..+....+.
T Consensus       268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~  347 (452)
T PRK11273        268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNP  347 (452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccCh
Confidence            3344455666654 55789999999999999999999999999999999  555432 2223333333333323222134


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH-HHHHHHHhhcccCchHHHHHHHHHHHHH
Q 009469          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVT-GLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       298 ~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~i-gp~i~~~l~~~~gw~~~f~i~~~~~~i~  376 (534)
                      +..+++.++.|.+..........+..|.+|+++||+++|+.+....+|+.+ +|.+.+.+.+++||++.|++.++.+++.
T Consensus       348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~  427 (452)
T PRK11273        348 TVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHH
Confidence            444445555555433333334456779999999999999999888888654 7999999999999999999888777666


Q ss_pred             HHHHHHhhc
Q 009469          377 FALWLKKAY  385 (534)
Q Consensus       377 ~i~~~~~~~  385 (534)
                      ++......+
T Consensus       428 ~~~~~~~~~  436 (452)
T PRK11273        428 VILLIVVMI  436 (452)
T ss_pred             HHHHHHHhc
Confidence            555554444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.36  E-value=3.4e-11  Score=126.84  Aligned_cols=167  Identities=13%  Similarity=0.010  Sum_probs=114.5

Q ss_pred             HhhhhHHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--CCc-hHHHHHHHHHHHHHHHHhhhccC
Q 009469          220 NMDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGK-PVLGFGVIWWSVATVLTPVAARI  295 (534)
Q Consensus       220 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~--Grr-~~l~~g~~~~~i~~~l~~~~~~~  295 (534)
                      ......+....|.+. +++|++..+.++..+.+.++..++.++.|+++||+  ++| +......+...+..+........
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFA  335 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccc
Confidence            333344445556554 67899999999999999999999999999999999  333 32222221112111111111211


Q ss_pred             ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q 009469          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (534)
Q Consensus       296 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i  375 (534)
                      +...+.+..++.|++...........+.|.+|+++|++++|+.+....+|..++|.+.+++.+..||+..|++.+++.++
T Consensus       336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~  415 (434)
T PRK11663        336 SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGI  415 (434)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHH
Confidence            33333344444554433333344567789999999999999999999999999999999999999999999998888877


Q ss_pred             HHHHHHHhhcC
Q 009469          376 WFALWLKKAYS  386 (534)
Q Consensus       376 ~~i~~~~~~~~  386 (534)
                      ..+..+...++
T Consensus       416 ~~~~~~~~~~~  426 (434)
T PRK11663        416 SALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHhh
Confidence            76666554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.35  E-value=9.8e-11  Score=121.73  Aligned_cols=166  Identities=13%  Similarity=-0.001  Sum_probs=127.2

Q ss_pred             hhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      ..........|.+.+++|.+..+.++..+++.++..++.++.|++.||+|||+.+.++..+.+++.++....+. +...+
T Consensus       219 ~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  297 (393)
T PRK09705        219 GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL-QLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc-hHHHH
Confidence            34444555566666678999999999999999999999999999999999999998888877777665543331 22222


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~~i  378 (534)
                        .-++.|++.+...+.......+.++ ++++++.+|+.+....++..++|.+.+++.+..| |...|++.++..++..+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              2345688878777877777777775 5689999999999999999999999999999876 77777777766666666


Q ss_pred             HHHHhhcCCCC
Q 009469          379 LWLKKAYSSPK  389 (534)
Q Consensus       379 ~~~~~~~~~~~  389 (534)
                      +.+...+++++
T Consensus       376 ~~~~~~~~~~~  386 (393)
T PRK09705        376 ITLRFAPARFP  386 (393)
T ss_pred             HHHHhcccccc
Confidence            65565555443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.35  E-value=4.8e-11  Score=124.78  Aligned_cols=278  Identities=17%  Similarity=0.119  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcc-hhHHHHHHH----HHHHHHHHHHHHHHHhhhCCchHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNST-TVGLIQSSF----FWGYLLTQIVGGIWADKFGGKPVLGFGVI  280 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~i~s~~----~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~  280 (534)
                      +......++-.+..++.........+.....++.... ..+......    .+...+..+..|.++||+|||..+.+..+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            3444445555555555555555556665555544332 223333333    67788899999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCChHHHHHHHHHHhhc--ccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          281 WWSVATVLTPVAARIGLPFLLIMRAFMGIG--EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       281 ~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig--~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      ...+..++..+..   ||.++    +.|+.  .+.......++++|....++|...+|+.......+.+++|.+++.+..
T Consensus       101 ~~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  101 GTILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            9888888777765   44444    44432  245567888999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCc--cccccccccHHHhhcchhHHHHHHHHHHH
Q 009469          359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSI--SKEAVSVIPWKLILSKAPVWALIISHFCH  436 (534)
Q Consensus       359 ~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~l~~~~~  436 (534)
                      ..|.-.+|++.++..++..+..+...+++..+++... ...........  .............-.+|..+.+++..++.
T Consensus       174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~  252 (463)
T KOG2816|consen  174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLS  252 (463)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-ccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHH
Confidence            9999999999988888888887777777654433321 00000000000  00000001111122345556555555555


Q ss_pred             HHHHHHHHH-HHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHH-HHHHHhhccc
Q 009469          437 NWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG-WIADTLVSKG  491 (534)
Q Consensus       437 ~~~~~~~~~-~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g-~l~dr~g~r~  491 (534)
                      ......-.. .++.|+...++++..+.+.+.+.......++.++.. .+...++.++
T Consensus       253 ~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~  309 (463)
T KOG2816|consen  253 SLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR  309 (463)
T ss_pred             HHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            444433222 446777888999999999888898888888888865 7777788886

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.33  E-value=1.8e-11  Score=127.03  Aligned_cols=139  Identities=16%  Similarity=0.196  Sum_probs=113.4

Q ss_pred             HhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHH-HHhhhccCChHHHHHHHH
Q 009469          228 IAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV-LTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       228 ~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~-l~~~~~~~~~~~ll~~r~  305 (534)
                      ...|. +.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++..+..+ +.....  +.+.+.+..+
T Consensus       259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  336 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA--NVAVLGLGLF  336 (405)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC--chHHHHHHHH
Confidence            33444 5567899999999999999999999999999999999999998888776543333 222323  5556666667


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHH
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYS  368 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i  368 (534)
                      +.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|+++|.+.++.| |+..+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       337 FQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            77777677777888999999999999999999999999999999999999999988 8776654

>TIGR00897 2A0118 polyol permease family

Probab=99.32  E-value=1.4e-10  Score=120.96  Aligned_cols=161  Identities=16%  Similarity=0.210  Sum_probs=122.4

Q ss_pred             HhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH-HHHHHHHHHHHHHhhhc---cC
Q 009469          220 NMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAA---RI  295 (534)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~g~~~~~i~~~l~~~~~---~~  295 (534)
                      ...........|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+.+.+.+   ..
T Consensus       235 ~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  314 (402)
T TIGR00897       235 TIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH  314 (402)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            334444556677777889999999999999999999999999999999999988764 33333333333332211   12


Q ss_pred             ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q 009469          296 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (534)
Q Consensus       296 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i  375 (534)
                      +.+.+++..++.|++.+...+ ....+.+.. +++|++++|+.+....+|..++|.+++.+.+..||...+++.+++.++
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i  392 (402)
T TIGR00897       315 SFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV  392 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            456667788888888776544 456667765 568999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHH
Q 009469          376 WFALWLK  382 (534)
Q Consensus       376 ~~i~~~~  382 (534)
                      ..++.++
T Consensus       393 ~~~~~~~  399 (402)
T TIGR00897       393 SAFLTAF  399 (402)
T ss_pred             HHHHHHH
Confidence            6655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.2e-11  Score=121.80  Aligned_cols=179  Identities=15%  Similarity=0.096  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--CCchHH-HHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVL-GFGVIWWS  283 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l-~~g~~~~~  283 (534)
                      .+..+++..+..+..++.+.--.|. +.|..|.+....++..+++-++.+.+.+++|+++||+  |||..+ ++.+++..
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            3344555566666666666655554 5777899999999999999999999999999999996  666554 55666666


Q ss_pred             HHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCc
Q 009469          284 VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       284 i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~gw  362 (534)
                      ++.+...++++.|+.+..++-++.|+..-+..-.......|..|++.-|++.|+...+..+ |.+.+....+++.+.+||
T Consensus       333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW  412 (448)
T COG2271         333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGW  412 (448)
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCC
Confidence            6666777777667788889999999988888888888889999999999999999999998 899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC
Q 009469          363 PSVFYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       363 ~~~f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      ...|+++.+.+++..++.+.....
T Consensus       413 ~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         413 DGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhh
Confidence            999998887777776666555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.32  E-value=1.9e-11  Score=129.60  Aligned_cols=155  Identities=15%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             hhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--CCchHHHH--HHHHHHHHHHHHhhhccCCh
Q 009469          222 DRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVLGF--GVIWWSVATVLTPVAARIGL  297 (534)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l~~--g~~~~~i~~~l~~~~~~~~~  297 (534)
                      ........++.+.+++|.+..+.+++.++..++..++.++.|+++||.  ++|+...+  +.++.+++.+++.+.+  ++
T Consensus       256 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~  333 (455)
T TIGR00892       256 GFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG--DY  333 (455)
T ss_pred             HccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc--hH
Confidence            333444556666677899999999999999999999999999999984  33433333  3333344444555555  67


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHHH
Q 009469          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIW  376 (534)
Q Consensus       298 ~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~-gw~~~f~i~~~~~~i~  376 (534)
                      +.+++.+++.|++.+...+...+++.+.+|++++++++|+++....+|..+||.++|.+.+.. +|++.|++.+++.++.
T Consensus       334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~  413 (455)
T TIGR00892       334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA  413 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence            888889999999999988999999999999999999999999999999999999999999887 5999999887766554


Q ss_pred             HH
Q 009469          377 FA  378 (534)
Q Consensus       377 ~i  378 (534)
                      .+
T Consensus       414 ~~  415 (455)
T TIGR00892       414 GL  415 (455)
T ss_pred             HH
Confidence            44

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.31  E-value=1.1e-10  Score=122.37  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=108.3

Q ss_pred             HHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 009469          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       226 ~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~  305 (534)
                      +...+|.+.++.|.++.+.+.+.++..++..++.+++|++.||+|||+.+..+.++..++.++.......+...+.+..+
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            44456777677899999999999999999999999999999999999999888877766655544333212322222222


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      ..+++..+..+....++.|.+|+++||+++|+......+|+.++|.+.+++.+.+|+....++.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            2223333334556678899999999999999999999999999999999999988876544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.31  E-value=1.5e-10  Score=123.51  Aligned_cols=167  Identities=15%  Similarity=0.077  Sum_probs=124.2

Q ss_pred             hhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCC--hHHH
Q 009469          223 RVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG--LPFL  300 (534)
Q Consensus       223 ~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~--~~~l  300 (534)
                      .+......|.+.+++|.+....++......+...++.++.|+++||+|||++++++.++.+++.++++.....+  ....
T Consensus       287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            33444556778888998888778887788888899999999999999999999999999888887766442111  1122


Q ss_pred             HHHHHHHhhcccc-hhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh------cccCchHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGV-AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI------QKFGWPSVFYSFGSLG  373 (534)
Q Consensus       301 l~~r~l~Gig~g~-~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~------~~~gw~~~f~i~~~~~  373 (534)
                      +.+.++.+++.+. ..+....+++|.+|+++|++++|+......+|..+++.+.+.+.      +.++|++.|++.+++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHH
Confidence            2333444444433 23667899999999999999999999999999988876665443      5788999999888877


Q ss_pred             HHHHHHHHHhhcCCCC
Q 009469          374 SIWFALWLKKAYSSPK  389 (534)
Q Consensus       374 ~i~~i~~~~~~~~~~~  389 (534)
                      ++.+++.+...++++.
T Consensus       447 ~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        447 VLAALFMWKFVPETKG  462 (479)
T ss_pred             HHHHHHHHhccccCCC
Confidence            7777666665555443

>PRK09952 shikimate transporter; Provisional

Probab=99.30  E-value=1.4e-10  Score=122.24  Aligned_cols=159  Identities=16%  Similarity=0.047  Sum_probs=113.9

Q ss_pred             hHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh--ccCChHHH
Q 009469          224 VNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPFL  300 (534)
Q Consensus       224 ~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~--~~~~~~~l  300 (534)
                      +......|. +.+++|.+......+..+..+...++.+++|+++||+|||+++.++.++.+++.+.+...  ...+.+.+
T Consensus       267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T PRK09952        267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIV  346 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            333444444 456788888766666666677778888999999999999999888877665554333221  11124444


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHH-HHHHHHHHHHHHHHHhhccc--CchHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWF  377 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~lG~~igp~i~~~l~~~~--gw~~~f~i~~~~~~i~~  377 (534)
                      ++..++.+++.+...+...++++|.+|++.|+.+.++.+. +..+|+.++|.+.+++.+..  +|...+...++..++..
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~  426 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            5556666788787788889999999999999999998655 45589999999999998754  47777776666666555


Q ss_pred             HHHHH
Q 009469          378 ALWLK  382 (534)
Q Consensus       378 i~~~~  382 (534)
                      +..+.
T Consensus       427 v~~~~  431 (438)
T PRK09952        427 MTALL  431 (438)
T ss_pred             HHHHH
Confidence            55443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.29  E-value=1.3e-09  Score=116.68  Aligned_cols=155  Identities=15%  Similarity=0.142  Sum_probs=118.9

Q ss_pred             hHHHHHhhhCCCcchhHHHHH-HHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH---hhhccCChHHHHHHH
Q 009469          229 AILPMSKEFNWNSTTVGLIQS-SFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIMR  304 (534)
Q Consensus       229 ~~~~~~~~~g~s~~~~g~i~s-~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~---~~~~~~~~~~ll~~r  304 (534)
                      ..|.+.+++|++..+++++.. ...++..++.+++|+++||+|+|+.+.++.++.++..+++   +... .+.+.+.+.-
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~-~~~~~l~~~~  323 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD-KNLYSMGAAV  323 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence            344456778999999999874 6678999999999999999999988777666555544332   2222 2444445555


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      ++..+..+...+...++..+..+++.+++.+++.+...++|..+++.++|.+.+.+||+..|.+.+++.++..++....+
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555555556777888899999999999999999999999999999999999999999999888877777666555543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2.7e-10  Score=115.29  Aligned_cols=177  Identities=15%  Similarity=0.189  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT  286 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~  286 (534)
                      .+........+........++..-|.+.+..|.+...++++...+.++..++.+++|+++|| +.|+.+....++.++..
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~  290 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALAL  290 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHH
Confidence            33333333334444455556667777888889999999999999999999999999999999 99999988888888877


Q ss_pred             HHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHH
Q 009469          287 VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVF  366 (534)
Q Consensus       287 ~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f  366 (534)
                      +.+.+..+ +.+..++.-++.|++.+.........+++ .-++.+..+.++.....++|..+|..++|.+.+++|+....
T Consensus       291 l~l~~~~~-~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~  368 (394)
T COG2814         291 LALTFTGA-SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATG  368 (394)
T ss_pred             HHHHHhcc-hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            77766653 45566677777888777666666666666 33789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcC
Q 009469          367 YSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       367 ~i~~~~~~i~~i~~~~~~~~  386 (534)
                      ++.+++.++..++.+...+.
T Consensus       369 ~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         369 WVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99998888877776655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.28  E-value=3.3e-10  Score=119.42  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=104.8

Q ss_pred             HHHhhhhHHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHH-HH-hhhcc
Q 009469          218 LCNMDRVNMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATV-LT-PVAAR  294 (534)
Q Consensus       218 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~-l~-~~~~~  294 (534)
                      .............|.+. +.+|.+..+.++....+.++..++.+++|+++||+|||++++++.++.++..+ .. .....
T Consensus       249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  328 (434)
T PRK15075        249 MTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33344445555566654 45799999999999899999999999999999999999988776554433221 11 11122


Q ss_pred             CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHH-HHHHHHHHHHHHHHHhhcccCchH
Q 009469          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWPS  364 (534)
Q Consensus       295 ~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~lG~~igp~i~~~l~~~~gw~~  364 (534)
                      .++..+.+..++.|++.+...+....++.|.+|++.|+.++++... +..+++.++|.+.+++.+..|+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~  399 (434)
T PRK15075        329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA  399 (434)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence            2343344445555666666666677889999999999999999655 444567889999999999888643

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.25  E-value=4.2e-10  Score=116.45  Aligned_cols=147  Identities=17%  Similarity=0.083  Sum_probs=122.1

Q ss_pred             HHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 009469          226 MSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       226 ~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~  305 (534)
                      .....+.+.++.|.+..++|++.+...++..+..++.|++.||+|+|+.+.++.++.+++.++.+..+  +.+.+++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  301 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHH
Confidence            33344555567899999999999999999999999999999999999999999999888887777777  7888888999


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~  376 (534)
                      +.|++.+...+....++.+. +++++++..+++. ....+|..+||.++|.+.+.+|+ ..|+..+++.++.
T Consensus       302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            99999998888888888887 5667789999886 55678889999999999999887 4666666555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.23  E-value=2.9e-10  Score=121.45  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=135.7

Q ss_pred             HHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 009469          227 SIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       227 ~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~  305 (534)
                      ...+|.+ .+.+|.++..+|++.+.+.+|.+++.++.+++.+|+++++++..+.++++++.+.+++++  +.+..++..+
T Consensus       238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--~~~~~~~~l~  315 (524)
T PF05977_consen  238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--SFWLALIALF  315 (524)
T ss_pred             HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--HHHHHHHHHH
Confidence            3456665 467899999999999999999999999999999999999999999999999999999888  7888888889


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                      +.|++.........+.+.+..|++.||++++++.+....+..+|.++.|.+.+.+|.+.++.+.++..++..++.+
T Consensus       316 l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  316 LAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888899999999999999999999999999999999999999999999999998877766555554444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.23  E-value=1.1e-10  Score=119.03  Aligned_cols=133  Identities=17%  Similarity=0.265  Sum_probs=117.6

Q ss_pred             HhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 009469          228 IAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       228 ~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      ...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.+. +.+.+++..++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  310 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFLVLWFA  310 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHH
Confidence            556666554 8999999999999999999999999999999999999999888888877777777663 37778888999


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      .|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.++|.+.+.+|
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999988654

>TIGR00895 2A0115 benzoate transport

Probab=99.23  E-value=1.7e-10  Score=119.14  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=111.8

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhcc
Q 009469          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR  294 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~  294 (534)
                      ..++............|.+.+++|.+..+.+++.++..++..++.++.|++.||+|+|+.+....+......++..... 
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  336 (398)
T TIGR00895       258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF-  336 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh-
Confidence            3334444444555667788888999999999999999999999999999999999999554444433333333332233 


Q ss_pred             CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          295 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (534)
Q Consensus       295 ~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l  356 (534)
                       +.+.+++..++.|++.+...+...+++.+.+|+++|++++|+......+|..+||.++|++
T Consensus       337 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       337 -SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence             5666778888999999999999999999999999999999999999999999999999876

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.23  E-value=7.6e-10  Score=116.96  Aligned_cols=175  Identities=15%  Similarity=0.138  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHhh-hhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCc--hHHHHHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMD-RVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK--PVLGFGVIWWS  283 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr--~~l~~g~~~~~  283 (534)
                      +.+....++.++..-+ .+++.....+..+++|++..+...+..+..+..++|.+++|++.||+|.|  ++++++.+++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            3344444444443333 33444445556779999999999999999999999999999999999999  88888887775


Q ss_pred             HHHHHHhh--------hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009469          284 VATVLTPV--------AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI  355 (534)
Q Consensus       284 i~~~l~~~--------~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~  355 (534)
                      +..+...+        ..  +.+.+++..++.|++.|..++..-++.+++.|+++.+..+|++....-....+||++.+.
T Consensus       361 ~i~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~  438 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGL  438 (477)
T ss_pred             HHHHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444333        23  567788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccC-chHHHHHHHHHHHHHHHHHHHh
Q 009469          356 LIQKFG-WPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       356 l~~~~g-w~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      +.+..| -|+.+....++.++.+++.+..
T Consensus       439 i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  439 ITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999886 7888887777776666665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.21  E-value=2.4e-10  Score=117.09  Aligned_cols=143  Identities=16%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             hHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCC-chH-HHHHH-HHHHHHHHHHhhhccCChHH
Q 009469          224 VNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPV-LGFGV-IWWSVATVLTPVAARIGLPF  299 (534)
Q Consensus       224 ~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~-l~~g~-~~~~i~~~l~~~~~~~~~~~  299 (534)
                      ..+....|. +.+.+|.+..+.+++.+...++..++.++.|++.||+++ |+. +.... ....++..+.......+...
T Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLM  312 (379)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHH
Confidence            334444454 456789999999999999999999999999999998643 332 22211 22222222222222224455


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHH
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVF  366 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f  366 (534)
                      +++..++.|+......+....++.|.+|+++|+++.|+++....+|..++|.+.|.+.+.+||++.|
T Consensus       313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            5666677777666666667788999999999999999999999999999999999999999998754

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.21  E-value=8.3e-10  Score=114.79  Aligned_cols=142  Identities=9%  Similarity=0.077  Sum_probs=120.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhH
Q 009469          238 NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPA  317 (534)
Q Consensus       238 g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~  317 (534)
                      +.+....|++.++..+...++.++.|++.||+|+|+.+.++.++.++..++...++  +.+.+++..++.|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999999998888887777766  6777788899999987776666


Q ss_pred             HHHHHhhhccCCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 009469          318 MNNMLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       318 ~~~~i~~~~~~~~rg~~~gi-~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                      ...++.+..+++.+++..+. ++....+|..+++.++|++.+.+||+..|++.+++.++..++..
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77778888888888887766 66789999999999999999999999999998888777665544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.20  E-value=4e-10  Score=118.88  Aligned_cols=163  Identities=13%  Similarity=0.045  Sum_probs=111.1

Q ss_pred             HHHHhHHHHH-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH---HHHHHHhhhccCChHHH
Q 009469          225 NMSIAILPMS-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS---VATVLTPVAARIGLPFL  300 (534)
Q Consensus       225 ~~~~~~~~~~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~---i~~~l~~~~~~~~~~~l  300 (534)
                      .+....|.+. +..|.++.+.++...++.++..++.+++|+++||+++++....+.++..   ++.+++...+..+.+..
T Consensus       269 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       269 GVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            3444556554 4579999999999999999999999999999999975432223332221   12222222221133333


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHH-HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLG-SVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL  379 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG-~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~  379 (534)
                      .+..++.|++.............+.+|+++|++++|+.+....+| .+++|.+.|.+.+..||.+.|++.+++.++..+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            344455555433332333456789999999999999998887776 4789999999999999999999888777777666


Q ss_pred             HHHhhcCC
Q 009469          380 WLKKAYSS  387 (534)
Q Consensus       380 ~~~~~~~~  387 (534)
                      .+...+++
T Consensus       429 ~~~~~~~~  436 (438)
T TIGR00712       429 LIVVMIGE  436 (438)
T ss_pred             HHHHHhhc
Confidence            66665543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=99.20  E-value=4.5e-10  Score=119.56  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             hhhHHHHhHHHHHh-hhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc-cCChHH
Q 009469          222 DRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-RIGLPF  299 (534)
Q Consensus       222 ~~~~~~~~~~~~~~-~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~-~~~~~~  299 (534)
                      .........|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|+|+++.++.++.+++.++..+.. ..+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (471)
T PRK10504        276 GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYL  355 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            33445556666655 5899999999999999999999999999999999999999999888887776665543 123444


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      +.+..++.|++.+...+....++.+.+|+++++.++++.+....+|..+|+.+++.+.+..|+
T Consensus       356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            455667788888888888999999999999999999999999999999999999998876654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.19  E-value=6.9e-10  Score=115.17  Aligned_cols=150  Identities=17%  Similarity=0.115  Sum_probs=113.0

Q ss_pred             hHHHHHhhhCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh-hc---cCChHHHHHH
Q 009469          229 AILPMSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV-AA---RIGLPFLLIM  303 (534)
Q Consensus       229 ~~~~~~~~~g~s~~~~g~i~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~-~~---~~~~~~ll~~  303 (534)
                      ..+.+.++.|+++.++|++.....+ ...++.++.|++.||+|+|+.+.++.++.++..+.... ..   ..+...++..
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            4455556789999999999888764 66677899999999999999988877665333322221 11   1123334444


Q ss_pred             HHHHhhcccchhhHHHHHHhhhccC-CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 009469          304 RAFMGIGEGVAMPAMNNMLSKWIPV-SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       304 r~l~Gig~g~~~~~~~~~i~~~~~~-~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i  378 (534)
                      .++.+++.+...+...+.+.+..++ +++++.+++.++..++|..+||.++|.+.+..|++..|++.+++.++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            5556667777777888888788766 78999999999999999999999999999999999999887766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.18  E-value=1.8e-09  Score=108.33  Aligned_cols=156  Identities=8%  Similarity=0.072  Sum_probs=118.0

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHh---hhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          212 CFSAFLLCNMDRVNMSIAILPMSK---EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      ..+..++.......+....+.+.+   .+|+++.+.++..+.+..+..++.++.+++.||+|+|+++.++.++.+++.++
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l  224 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG  224 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            344444444344444444444433   36999999999999999999999999999999999999998888888777765


Q ss_pred             HhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHH
Q 009469          289 TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYS  368 (534)
Q Consensus       289 ~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i  368 (534)
                      ....+  +... +..-++.|++.+..+|...+...+.+|+ +.+.+.++. ....+|++++|++.|.+.+..|.++.|++
T Consensus       225 ~~~~~--~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       225 AALTH--GYVA-MWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HHHcC--CHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            55544  3332 3355578999999999999999998854 456677775 56679999999999999999998888875


Q ss_pred             HHHH
Q 009469          369 FGSL  372 (534)
Q Consensus       369 ~~~~  372 (534)
                      ..+.
T Consensus       300 ~~~~  303 (310)
T TIGR01272       300 PVPC  303 (310)
T ss_pred             HHHH
Confidence            4433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10054 putative transporter; Provisional

Probab=99.18  E-value=4.9e-10  Score=116.54  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=123.0

Q ss_pred             hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccch
Q 009469          235 KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVA  314 (534)
Q Consensus       235 ~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~  314 (534)
                      ++.+.+...++++.+.+.+......++.|++.||+++|+.+.++.++..++.++..+..+ +.+.+++..++.|+|.+..
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN-SLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHHHH
Confidence            445667777888888888888888899999999999999999998888888777765431 5666777888999998887


Q ss_pred             hhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 009469          315 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSP  388 (534)
Q Consensus       315 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~  388 (534)
                      .+.....+.+..|++.|+++++..+ ...+|..+||.++|.+.++.|....|++.+....+..++.+...+++|
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            8888899999999999999998765 566899999999999999999888888877776666666554444443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.17  E-value=2e-09  Score=113.41  Aligned_cols=159  Identities=11%  Similarity=0.038  Sum_probs=100.6

Q ss_pred             hhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh--hhccCChHH
Q 009469          223 RVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP--VAARIGLPF  299 (534)
Q Consensus       223 ~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~--~~~~~~~~~  299 (534)
                      .+.+...+|.+ .+++|.+..+.++..++..++..++.++.|+++||+|||+++.++.++.++..+...  .....+...
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            33444555654 566899998999988888888889999999999999999988776665443332221  111112222


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHH
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWF  377 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~~  377 (534)
                      .+..-.+.+++.+...+....+++|++|++.|++++|+.+....+ ++...|.+.+.+ +..| |...+++.++..++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~  417 (432)
T PRK10406        339 AFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAF  417 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Confidence            222222222333334455678899999999999999998875553 344578877755 4455 5445555544444444


Q ss_pred             HHHHH
Q 009469          378 ALWLK  382 (534)
Q Consensus       378 i~~~~  382 (534)
                      +..++
T Consensus       418 ~~~~~  422 (432)
T PRK10406        418 LVSLM  422 (432)
T ss_pred             HHHHH
Confidence            44333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.16  E-value=1e-08  Score=98.38  Aligned_cols=178  Identities=13%  Similarity=0.108  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      ||..+........ .....+.++.+-|.+++.+|++..+...+.+...+|..+ .++.|.+.|++|++.++.+|.+...+
T Consensus         1 rW~~l~a~~~v~~-~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    1 RWLSLVASIWVQL-CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFV   78 (250)
T ss_pred             ChhhHHHHHHHHH-hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4666555555443 445677888999999999999999999999999999886 58889999999999999999999999


Q ss_pred             HHHHHhhhcc-----CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          285 ATVLTPVAAR-----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (534)
Q Consensus       285 ~~~l~~~~~~-----~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~  359 (534)
                      |..+..++-+     .++|.+.+..++.|.+.+....+......+.|| ++||++.|+.-...++++.+-..+...+...
T Consensus        79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            9988776531     356777777778788777766777777778895 6899999999999999998887777766654


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhhcC
Q 009469          360 FGWPSVFYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       360 ~gw~~~f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      -.-. -+.+.+....++.++...+.+.
T Consensus       158 ~~~~-fll~la~~~~~v~l~~~~~vr~  183 (250)
T PF06813_consen  158 DPSS-FLLFLAVLPAVVCLVAMFFVRP  183 (250)
T ss_pred             ChHH-HHHHHHHHHHHHHHHHhhheec
Confidence            2222 2333444444443434344443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.15  E-value=4.4e-09  Score=109.39  Aligned_cols=148  Identities=12%  Similarity=0.039  Sum_probs=115.4

Q ss_pred             hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHH-HHHHHHHHhhhccCChHHHHHHHHHH
Q 009469          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW-WSVATVLTPVAARIGLPFLLIMRAFM  307 (534)
Q Consensus       229 ~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~-~~i~~~l~~~~~~~~~~~ll~~r~l~  307 (534)
                      ..|.+.+++|++..+.+++...+.++..++.++.+++.||.+ |+.++.+.++ .....++.....  +.+.+.+..++.
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~  315 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGS--DKIVATGVAIIW  315 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHH
Confidence            346677888999999999999999999999999999999964 4444444444 333334434444  566777788899


Q ss_pred             hhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 009469          308 GIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (534)
Q Consensus       308 Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~  380 (534)
                      |++.+...+...+++.+..| ++++++.++......+|..+||.++|.+.+..|++..++..+++.++..++.
T Consensus       316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence            99998888888889998885 5677888888888899999999999999999999988887766655544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.15  E-value=3.7e-09  Score=110.27  Aligned_cols=157  Identities=13%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             HhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc---cCChHHHHHH
Q 009469          228 IAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA---RIGLPFLLIM  303 (534)
Q Consensus       228 ~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~---~~~~~~ll~~  303 (534)
                      ...|. +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+..   ..+++.+++.
T Consensus       236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            33444 4567899999999988888888999999999999999999999998888877776665432   2245556777


Q ss_pred             HHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       304 r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      .++.|++.+...+......... ++++||++.++++....+|..+|+.+++.+.+..++....+..++..++..++....
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIF  394 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8888998887766666655444 458999999999999999999999999999888887665555444444443333333


Q ss_pred             hc
Q 009469          384 AY  385 (534)
Q Consensus       384 ~~  385 (534)
                      .+
T Consensus       395 ~~  396 (406)
T PRK15402        395 LK  396 (406)
T ss_pred             hc
Confidence            33

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.14  E-value=1.9e-09  Score=113.52  Aligned_cols=122  Identities=14%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHH
Q 009469          240 NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN  319 (534)
Q Consensus       240 s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~  319 (534)
                      +....+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+.++ +.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS-NLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888889999999999999999999999999999888888777666532 456677777888999998888999


Q ss_pred             HHHhhhcc-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          320 NMLSKWIP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       320 ~~i~~~~~-------~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ++++|..+       ++++|.++|+++....+|..+++.+.+.+.+..||
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99998865       45679999999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.13  E-value=1.3e-09  Score=117.18  Aligned_cols=165  Identities=13%  Similarity=-0.011  Sum_probs=108.6

Q ss_pred             hhhHHHHhHHHHHhhhCCCcchhHH------------HHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469          222 DRVNMSIAILPMSKEFNWNSTTVGL------------IQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~s~~~~g~------------i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~  289 (534)
                      ..+......|.+.++.|.+....+.            ...+..++..++.++.++++||+|||++++++.++.+++.++.
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            3334444577777788876543221            2333445666788899999999999999988888777766655


Q ss_pred             hhhcc--CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Q 009469          290 PVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------  359 (534)
Q Consensus       290 ~~~~~--~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~--------  359 (534)
                      ++...  .+...+...-+...++.....+....+.+|.+|++.|++++|+.+....+|.+++|.+.+.+.+.        
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  462 (502)
T TIGR00887       383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP  462 (502)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence            54321  01111111111112222233456677789999999999999999999999999999999998874        


Q ss_pred             --cCchHHHHHHHHHHHHHHHHHHHhhcCC
Q 009469          360 --FGWPSVFYSFGSLGSIWFALWLKKAYSS  387 (534)
Q Consensus       360 --~gw~~~f~i~~~~~~i~~i~~~~~~~~~  387 (534)
                        .++...|++.+++.++..+.. ++.|++
T Consensus       463 ~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt  491 (502)
T TIGR00887       463 TGIWMGHVLEIFALFMFLGILFT-LLIPET  491 (502)
T ss_pred             ccccchHHHHHHHHHHHHHHHHh-eEeccC
Confidence              345567777777766655543 344543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.13  E-value=5.6e-08  Score=106.33  Aligned_cols=158  Identities=21%  Similarity=0.269  Sum_probs=128.1

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHHHHHHHHhhhccC------ChHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARI------GLPF  299 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~i~~~l~~~~~~~------~~~~  299 (534)
                      ..+..++.+.+|++......+...+.....+.++++|+++|+ +|+++.+.++.+++.++.++.++....      ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            344556667789999999999999999999999999999997 699999999999999999888765311      1223


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhccCC---cchhHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCchHHHHHH
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVS---ERSRSLAFVYSGMYLGSVTGLAVSPILIQK-------FGWPSVFYSF  369 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~---~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-------~gw~~~f~i~  369 (534)
                      .+++-.+.++|.|+.-+...+...|.++++   +|-..+.+++.+.++|..+++.+.+++.+.       .+|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            566777788899999999999999999754   366788889999999999999999988744       3699999988


Q ss_pred             HHHHHHHHHHHHHhh
Q 009469          370 GSLGSIWFALWLKKA  384 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~  384 (534)
                      +++.++.++++....
T Consensus       168 ~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       168 AILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888887777665543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.13  E-value=4.7e-08  Score=99.57  Aligned_cols=292  Identities=12%  Similarity=0.093  Sum_probs=192.2

Q ss_pred             HhHHHHHhh-hCCCcchhH-HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHH
Q 009469          228 IAILPMSKE-FNWNSTTVG-LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       228 ~~~~~~~~~-~g~s~~~~g-~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~  305 (534)
                      ...|++.+. .|++..++. -+.-+..-.+.+..++...+.|..|.|++++++.+...+..+++.+.+  +...+-+.-+
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~  102 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQF  102 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHH
Confidence            344555554 788888875 366666677778888999999999999999999999998888888888  8889999999


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHHHHHh
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~--gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      +.|++.+. ..+..+++-...|+++--++.+...++.-+|..++.+++..+...-  ++....++......+.+++.+++
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99998775 5778899999999999999999999999999999999998887643  34555454444444444444443


Q ss_pred             hcCCCC-----CChhhh---HHHHhhhhC---C-----Cccc--ccc-------ccccHHHhhcchhHHHHHHHHHHHHH
Q 009469          384 AYSSPK-----EDPELR---AEEKRHILG---G-----SISK--EAV-------SVIPWKLILSKAPVWALIISHFCHNW  438 (534)
Q Consensus       384 ~~~~~~-----~~~~~~---~~~~~~~~~---~-----~~~~--~~~-------~~~~~~~ll~~~~~~~~~l~~~~~~~  438 (534)
                      ++.++.     ..+...   +.+.....+   .     ....  ...       -...++...++|.++...+...+...
T Consensus       182 P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atc  261 (412)
T PF01770_consen  182 PMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATC  261 (412)
T ss_pred             CCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence            322110     000000   000000000   0     0000  000       12345566778888888888888888


Q ss_pred             HHHHHHHHHHHHHHHh--hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          439 GTFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL  516 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~--~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~~  516 (534)
                      +++.+.+|......+.  -+-...-.|.+-+...+.+.++.+..|++-.++.+..-       ..+.+..++.+..++..
T Consensus       262 gy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~-------l~l~~~S~l~a~~L~lm  334 (412)
T PF01770_consen  262 GYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE-------LALGVFSLLQAGLLFLM  334 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            8888888888777764  12334446777778888888888888888444444322       23334444444455555


Q ss_pred             ccccchhHHHHhh
Q 009469          517 SHVRTPAMAVLCM  529 (534)
Q Consensus       517 ~~~~~~~~~~~~~  529 (534)
                      ....+.+...+..
T Consensus       335 ~~t~~Iwv~Y~~y  347 (412)
T PF01770_consen  335 SFTGNIWVCYAGY  347 (412)
T ss_pred             HHhhHHHHHHHHH
Confidence            5666665544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.11  E-value=2.4e-09  Score=109.52  Aligned_cols=150  Identities=9%  Similarity=0.057  Sum_probs=130.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhH
Q 009469          238 NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPA  317 (534)
Q Consensus       238 g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~  317 (534)
                      +.+...+|.+.++..+.-++...+..++.+|+|.|+.++++.+++++=.+++++++  +.+.+.+.+.+.|+-.+....+
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~--~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT--NPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHHHHHH
Confidence            44567799999999999999999999999999999999999999999999999999  8899999999999999999999


Q ss_pred             HHHHHhhhccCCcchhHHHHH-HHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 009469          318 MNNMLSKWIPVSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK  389 (534)
Q Consensus       318 ~~~~i~~~~~~~~rg~~~gi~-~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~  389 (534)
                      ..-++++.+|++-.++...+. +...++|.++.+.++|.+.++.|.+.+|++++.+.++..++..+..+++++
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            999999999988888888884 578899999999999999999999999999999888777777776655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.11  E-value=5.8e-09  Score=108.10  Aligned_cols=168  Identities=17%  Similarity=0.242  Sum_probs=130.7

Q ss_pred             HHHhhhhHHHHhHHHHHhhhC-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCC
Q 009469          218 LCNMDRVNMSIAILPMSKEFN-WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG  296 (534)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~  296 (534)
                      +.......+..+.+.+.++.| .+....+.+.++..+.-++.-.+.+++..|+|.|+++.++.+.+++=..+++...+ +
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~  296 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-P  296 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence            334444455556666677777 77888888889999999999999999999999999999999999998888887732 3


Q ss_pred             hHHHHH----HHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHH-HHHHHHHHHHHHHHHhhcccCchH------H
Q 009469          297 LPFLLI----MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWPS------V  365 (534)
Q Consensus       297 ~~~ll~----~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~lG~~igp~i~~~l~~~~gw~~------~  365 (534)
                      .+..++    ...+.|+..+..+.+...++.+.+|++.|+++.+++.+ ..++|.++|..++|++.+++|-+.      .
T Consensus       297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~  376 (400)
T PF03825_consen  297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAV  376 (400)
T ss_pred             cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            333332    34568999999999999999999999999999999887 578999999999999999877443      4


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 009469          366 FYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       366 f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      +.+.+++.++..++++.+.|+
T Consensus       377 ~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  377 FLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhccC
Confidence            444555555555555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.11  E-value=5.7e-09  Score=108.04  Aligned_cols=152  Identities=12%  Similarity=0.009  Sum_probs=109.8

Q ss_pred             hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHh
Q 009469          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMG  308 (534)
Q Consensus       229 ~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~G  308 (534)
                      ..|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+.++.++.+++.++.....+ +.+..++..++.+
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~  300 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG-MKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            345566678999999999999999999999999999999999999999888887777765544321 3445555666666


Q ss_pred             hcccchhhHHHH-HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHh
Q 009469          309 IGEGVAMPAMNN-MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       309 ig~g~~~~~~~~-~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      ++.....++... ...+..+++.++.+  .......+|..+||.++|++.+. .+|++.+++.+++.++........
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            665444444443 34444444444444  34667889999999999999985 689999988776665554444433

>TIGR00898 2A0119 cation transport protein

Probab=99.10  E-value=2.4e-09  Score=115.04  Aligned_cols=136  Identities=14%  Similarity=0.007  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhh
Q 009469          246 LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW  325 (534)
Q Consensus       246 ~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~  325 (534)
                      +...+..+...++.++.+++.||+|||+++.++.++.+++.++..+.+..+.+..++..++.+++.+..++....+.+|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566777888999999999999999999999988888877776633334455555666777777788889999999


Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          326 IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       326 ~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      +|++.|++++|+.+....+|.+++|.+.+ + ...++...+++.+++.++..++.++.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998 4 34556677777777766665555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.09  E-value=3.6e-09  Score=110.33  Aligned_cols=148  Identities=14%  Similarity=0.199  Sum_probs=106.1

Q ss_pred             HHHHHhhhCCCcchhHHHHHHH-HHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH---hhhccCChHHHHHHH-
Q 009469          230 ILPMSKEFNWNSTTVGLIQSSF-FWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIMR-  304 (534)
Q Consensus       230 ~~~~~~~~g~s~~~~g~i~s~~-~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~---~~~~~~~~~~ll~~r-  304 (534)
                      .+.+.+++|+++.+++++.+.. .++..++.+++|++.||+|+|+.+.++.++.++..+..   ++.++ +.+.+++.- 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~  311 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK-HLWTMALAIG  311 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHH
Confidence            3456677899999999988665 45688999999999999999998877776665554333   33321 445444444 


Q ss_pred             ---HHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 009469          305 ---AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       305 ---~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                         ++.|++.+...+....++.+.+|.+    ..+++....++|..+++.++|.+.+.+||++.|.+.++++++..++..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence               3455556666667777777777644    455666666788877777999999999999999988887777655544


Q ss_pred             H
Q 009469          382 K  382 (534)
Q Consensus       382 ~  382 (534)
                      .
T Consensus       388 ~  388 (402)
T PRK11902        388 L  388 (402)
T ss_pred             H
Confidence            3

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.07  E-value=4.2e-09  Score=124.46  Aligned_cols=144  Identities=16%  Similarity=0.209  Sum_probs=120.5

Q ss_pred             HHHHHhhhCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHh
Q 009469          230 ILPMSKEFNWNST-TVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMG  308 (534)
Q Consensus       230 ~~~~~~~~g~s~~-~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~G  308 (534)
                      .+++.+.+|.+.. +.+++.++..++.+++.+++|++.||+++++++.++.++.+++.+++.+..  +.+.++++.++.|
T Consensus       256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g  333 (1146)
T PRK08633        256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVLFFLFG  333 (1146)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Confidence            3445677899998 999999999999999999999999999999999888888888888777776  6777888889999


Q ss_pred             hcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHHHHH
Q 009469          309 IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSI  375 (534)
Q Consensus       309 ig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-~gw~~~f~i~~~~~~i  375 (534)
                      ++.+...+...+++.+.+|++.||+++|+.+....+|.++++.+++.+... +++...|++.+.+.++
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            999988889999999999999999999999999999998888888776542 3455556655544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.07  E-value=3e-09  Score=111.34  Aligned_cols=158  Identities=14%  Similarity=0.130  Sum_probs=108.9

Q ss_pred             HHHHHHHhhhhHHHHhHHHHHhhh--CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchH-HHHHHHHHHHHHHHHh
Q 009469          214 SAFLLCNMDRVNMSIAILPMSKEF--NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPV-LGFGVIWWSVATVLTP  290 (534)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~-l~~g~~~~~i~~~l~~  290 (534)
                      +.+++.....+.+...+|.+.+++  +.+..+.++......++..++.+++|+++||+++|+. +....++..++.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~  328 (412)
T TIGR02332       249 LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS  328 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH
Confidence            333444444555666777777664  5677888999999999999999999999999997774 3444444444332222


Q ss_pred             hhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHH
Q 009469          291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSF  369 (534)
Q Consensus       291 ~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~  369 (534)
                      ...  +....+++-.+.++|.....+.......+.+|+++|++++|+.+....+|.+++|.+.+.+.+..| |++.|++.
T Consensus       329 ~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~  406 (412)
T TIGR02332       329 ATD--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFV  406 (412)
T ss_pred             hcC--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHH
Confidence            222  222222222233333333334444555678999999999999999999999999999999999875 99998876


Q ss_pred             HHHH
Q 009469          370 GSLG  373 (534)
Q Consensus       370 ~~~~  373 (534)
                      +++.
T Consensus       407 ~~~~  410 (412)
T TIGR02332       407 AALL  410 (412)
T ss_pred             HHHH
Confidence            6543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.06  E-value=3.2e-09  Score=111.43  Aligned_cols=264  Identities=13%  Similarity=0.097  Sum_probs=167.8

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC-----CchHHHHHHHHHHHHHHHHhhhcc--CChHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG-----GKPVLGFGVIWWSVATVLTPVAAR--IGLPF  299 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G-----rr~~l~~g~~~~~i~~~l~~~~~~--~~~~~  299 (534)
                      ....+.+.+++|+++.+.....++..+... .-+++|.++|-+.     ||+-++++.++.+++.+.++..+.  .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            445677899999999999998888888875 4677799999863     556677777777666666655442  23555


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhcc--CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIP--VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWF  377 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~--~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~  377 (534)
                      ..+.-++..+|.+....++-+++.|...  ++.||...+.......+|.+++..++|.+.+..++++.|.+.+++..+..
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            6667778888889999999999999884  33478888899999999999999999999999999999998888877776


Q ss_pred             HHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhC
Q 009469          378 ALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALII-SHFCHNWGTFILLTWMPTYYNQVLK  456 (534)
Q Consensus       378 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l-~~~~~~~~~~~~~~~lp~~~~~~~g  456 (534)
                      +..+...++++............+................+..++.+.+|...+ ..++............-.+..+..+
T Consensus       169 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~  248 (433)
T PF03092_consen  169 IVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALG  248 (433)
T ss_pred             HHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEecccc
Confidence            666665554211111100000000000000000111234455667777776655 2222222111110101112223345


Q ss_pred             ---CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          457 ---FNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       457 ---~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                         +++...+.+..+..++.++|..+......+..-|+
T Consensus       249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~  286 (433)
T PF03092_consen  249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR  286 (433)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence               78888887776666777777776665554544443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.05  E-value=2.5e-09  Score=114.05  Aligned_cols=151  Identities=15%  Similarity=0.005  Sum_probs=103.0

Q ss_pred             hHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCch-------HHHHHHHHHHHHHHHHhhhccCChHHH
Q 009469          229 AILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKP-------VLGFGVIWWSVATVLTPVAARIGLPFL  300 (534)
Q Consensus       229 ~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~-------~l~~g~~~~~i~~~l~~~~~~~~~~~l  300 (534)
                      ..|. +.+++|++..+.+++.+++.++..++.+++|+++||+|||+       ++.+..++.++..++.+...  +.+..
T Consensus       274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~--~~~~~  351 (476)
T PLN00028        274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN--SLGAA  351 (476)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc--hHHHH
Confidence            3444 46778999999999999999999999999999999998652       22233333333333333343  44445


Q ss_pred             HHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 009469          301 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW  380 (534)
Q Consensus       301 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~  380 (534)
                      ++..++.+++.+...+...+++.+.. ++++|.+.|+...+..+|+.++|.+.+ .....+|+..|++.+++.++..++.
T Consensus       352 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        352 IVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence            55555666655555555556666665 578999999998877788877776654 2233469999998887777666555


Q ss_pred             HHh
Q 009469          381 LKK  383 (534)
Q Consensus       381 ~~~  383 (534)
                      ++.
T Consensus       430 ~~~  432 (476)
T PLN00028        430 AFI  432 (476)
T ss_pred             Hhe
Confidence            544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.05  E-value=5.5e-09  Score=108.88  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=113.6

Q ss_pred             HhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-hhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 009469          228 IAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-KFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       228 ~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D-r~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      ...|.+.++.+.++.+++++.++..++..++..+.+++.| |++.++.+..+.++.+++.++.++.+  +++.+++..++
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--NLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence            4566666665557788999988887777666666666665 46667777788888888877777776  56666677788


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc---Cc-hHHHHHHHHHHHHHHH
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF---GW-PSVFYSFGSLGSIWFA  378 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~---gw-~~~f~i~~~~~~i~~i  378 (534)
                      .|++.+...+...+++.+..|+++||+++|+.+....+|..+||.++|++.+..   ++ ...+++.+++.++..+
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999998864   33 3444444444444433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.04  E-value=6.9e-09  Score=104.31  Aligned_cols=151  Identities=21%  Similarity=0.224  Sum_probs=126.3

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      .....+-..++|++..++.++.....+..+++++++|+|.||+|.|+++.++.+++.+.++..-+..  .-..++++.++
T Consensus       273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll  350 (438)
T COG2270         273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWILGLL  350 (438)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHH
Confidence            3333344569999999999999999999999999999999999999999999999888877666655  44557778889


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHH
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFAL  379 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~  379 (534)
                      .|+..|..++..-++.++..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++.++.+++
T Consensus       351 ~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         351 VGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             HHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            9999999999999999999999999999999999999999999999999988765 455555555444444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1e-08  Score=106.97  Aligned_cols=188  Identities=15%  Similarity=0.060  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVA  285 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~  285 (534)
                      +...+.+.+......-+.+.+..+...+-++-|++..+.-++.....+...+..+++.++.||+|||+.++++..+..+.
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            33334444444444445555566666788888999999999999999999999999999999999999999999988888


Q ss_pred             HHHHhhhcc---CC--hH--HHHHHHHHHhhccc-chhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          286 TVLTPVAAR---IG--LP--FLLIMRAFMGIGEG-VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (534)
Q Consensus       286 ~~l~~~~~~---~~--~~--~ll~~r~l~Gig~g-~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~  357 (534)
                      .+++.....   ..  +.  ..+++.++..++.+ +.-|...-+.+|.+|++.|..++++......++..+-......+.
T Consensus       349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776654421   11  11  12333333333333 234778889999999999999999999988888888888777777


Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhh
Q 009469          358 QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL  394 (534)
Q Consensus       358 ~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~  394 (534)
                      +.+|- +.|+++.+.+++..+..++..|+++.+....
T Consensus       429 ~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  429 NVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYE  464 (485)
T ss_pred             HHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence            77776 7888888888888888888888877655443

>TIGR00896 CynX cyanate transporter

Probab=99.03  E-value=1.3e-08  Score=104.21  Aligned_cols=136  Identities=13%  Similarity=0.063  Sum_probs=107.9

Q ss_pred             hhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHHHHHHHHHHhhhccCChHHHH
Q 009469          223 RVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLL  301 (534)
Q Consensus       223 ~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll  301 (534)
                      ........|.+.++.|.+..+.+++.++..++..++.++.|++.||+ +||+.+.++.++.+++.+++.+...  .... 
T Consensus       213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-  289 (355)
T TIGR00896       213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM--HGLW-  289 (355)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh--hHHH-
Confidence            33444566777677899999999999999999999999999999999 5666777887888777776666552  2222 


Q ss_pred             HHHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          302 IMRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       302 ~~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      ...++.|++.+..++...+.+.+..+ +++++..+++.+....+|..++|.+.|++.++.|
T Consensus       290 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       290 AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            24567899999888888777776654 4567899999999899999999999999998775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.02  E-value=5.5e-09  Score=111.13  Aligned_cols=173  Identities=17%  Similarity=0.185  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC--CchHHHHHHHHHHHHHH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG--GKPVLGFGVIWWSVATV  287 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G--rr~~l~~g~~~~~i~~~  287 (534)
                      +...+...+..+...+....+|.+.+..+.+..+.+.+.++..+...++.++.|+++|+..  ++.+..++.++.+++.+
T Consensus       301 l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~  380 (509)
T KOG2504|consen  301 LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL  380 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence            3334444555566667777888899999999999999999999999999999999999988  44566777888888888


Q ss_pred             HHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHH
Q 009469          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVF  366 (534)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f  366 (534)
                      .+++++  +++.++..-++.|+..|........++.|+.+.++-..+.|+.....+++.++||+++|.+.+..| |...|
T Consensus       381 ~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f  458 (509)
T KOG2504|consen  381 FLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF  458 (509)
T ss_pred             HHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence            888888  889999999999999999888888899999999999999999999999999999999999999887 99999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 009469          367 YSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       367 ~i~~~~~~i~~i~~~~~~  384 (534)
                      +..++..++...+++...
T Consensus       459 ~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  459 YFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hhcChHHHHHHHHHHHhH
Confidence            998888877776655544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.00  E-value=5.5e-09  Score=104.96  Aligned_cols=173  Identities=15%  Similarity=0.076  Sum_probs=130.6

Q ss_pred             HHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh
Q 009469          213 FSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV  291 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~  291 (534)
                      ++.++......-.++..+|. +.++|+.++.+.|.+...+.+...+..+.+|+++||+|.++++.+....++++..+..+
T Consensus       224 sllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~  303 (417)
T COG2223         224 SLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSL  303 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHc
Confidence            33344444444455555565 58889999999999999999999999999999999999999999888888888877776


Q ss_pred             hcc-----CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHH
Q 009469          292 AAR-----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSV  365 (534)
Q Consensus       292 ~~~-----~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~  365 (534)
                      ...     .+...++..-+..++..|........++..++ +++-|.+.|+..+..++|+..-|...+...+..| +...
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if-~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~  382 (417)
T COG2223         304 FLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIF-PKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGA  382 (417)
T ss_pred             cccccccCcchHHHHHHHHHHHHHhccCcchheeechHHH-HhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHH
Confidence            541     12333333333334444444445567778888 5588999999999999999999999999988887 8888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 009469          366 FYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       366 f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      |+++..+.+++.++.+....+
T Consensus       383 f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         383 FMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999888888877766554433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.00  E-value=9.1e-09  Score=121.55  Aligned_cols=148  Identities=13%  Similarity=0.069  Sum_probs=117.4

Q ss_pred             HhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh--------------
Q 009469          228 IAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--------------  292 (534)
Q Consensus       228 ~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~--------------  292 (534)
                      ...|. +.+.+|.++.+.|++.+.+.++.+++.++.|+++|+.++++.+.++.++.+++.+.+++.              
T Consensus       246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            34455 456689999999999999999999999999999998887777666666655555444432              


Q ss_pred             ----ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCchHHHH
Q 009469          293 ----ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFY  367 (534)
Q Consensus       293 ----~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-~~gw~~~f~  367 (534)
                          ...+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++++.+.. ..++.+.++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence                002566677888899999999999999999999999999999999999999999999999999874 456666666


Q ss_pred             HHHHHHHH
Q 009469          368 SFGSLGSI  375 (534)
Q Consensus       368 i~~~~~~i  375 (534)
                      +.+++.++
T Consensus       406 ~~~~~~~~  413 (1140)
T PRK06814        406 FIALANLI  413 (1140)
T ss_pred             HHHHHHHH
Confidence            55554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.5e-08  Score=95.99  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=109.1

Q ss_pred             HHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHH-HHHHHhhhccCChHHHHHHHHHHh
Q 009469          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSV-ATVLTPVAARIGLPFLLIMRAFMG  308 (534)
Q Consensus       230 ~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i-~~~l~~~~~~~~~~~ll~~r~l~G  308 (534)
                      ...+++.||+|+...+.+.+......++.+++.|.++||+|++...+.+..+..+ +-.+..+..    +.=++...++|
T Consensus       288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----lsPy~~m~~lG  363 (459)
T KOG4686|consen  288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----LSPYTSMTFLG  363 (459)
T ss_pred             HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----ccHHHHHHHHh
Confidence            3447899999999999999988888999999999999999999877666554443 434444432    22345667788


Q ss_pred             hcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC---chHHHHHHHHH
Q 009469          309 IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG---WPSVFYSFGSL  372 (534)
Q Consensus       309 ig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g---w~~~f~i~~~~  372 (534)
                      +..+.........++...|+++.|++.|..+...++|-.+.|++++++.++-|   |--+|.+....
T Consensus       364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~  430 (459)
T KOG4686|consen  364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL  430 (459)
T ss_pred             hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence            88877777778889999999999999999999999999999999999998754   44455443333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.00  E-value=7e-09  Score=110.64  Aligned_cols=134  Identities=13%  Similarity=0.194  Sum_probs=113.5

Q ss_pred             HHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh--hccCChHHHHH
Q 009469          226 MSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV--AARIGLPFLLI  302 (534)
Q Consensus       226 ~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~--~~~~~~~~ll~  302 (534)
                      .....|.+ .+.+|.++.+.+++.....++..++.++.|++.||+|||+++.++.++.+++.++..+  .+..+++.++.
T Consensus       274 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (485)
T TIGR00711       274 SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL  353 (485)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            33455554 4568999999999999999999999999999999999999999999888888877663  23334666777


Q ss_pred             HHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          303 MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (534)
Q Consensus       303 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~  359 (534)
                      ..++.|++.+...++......+..|+++|+.+.|+.+....+|+.+|+.+.+.+.++
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788899999888888888888889999999999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.98  E-value=3.1e-08  Score=103.00  Aligned_cols=146  Identities=17%  Similarity=0.086  Sum_probs=113.4

Q ss_pred             HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcc
Q 009469          232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE  311 (534)
Q Consensus       232 ~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~  311 (534)
                      .+.+.+|.++.+.|++.+...++..+++++.+++.||.++|+++..+.+ .++..++.++.+  +++..++..++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--SLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--HHHHHHHHHHHHHHhh
Confidence            3566789999999999999999999999999999999999988877753 344444445544  5666677778889998


Q ss_pred             cchhhHHHHHHhhhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Q 009469          312 GVAMPAMNNMLSKWIPVSE-RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       312 g~~~~~~~~~i~~~~~~~~-rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                      +...++..+.+.+..|++. +|++.++.+....+|..++..+.+.+ ..+|-+..+++.++..++.+.+..
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            8888888888888765554 79999999999999999999998865 567777766665544444444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.98  E-value=1.3e-08  Score=107.68  Aligned_cols=137  Identities=16%  Similarity=0.145  Sum_probs=107.6

Q ss_pred             HHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHH
Q 009469          226 MSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR  304 (534)
Q Consensus       226 ~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r  304 (534)
                      .....+++ .+.+|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+..+++.+++..
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  326 (448)
T PRK09848        247 VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL  326 (448)
T ss_pred             HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            33344544 44567665555555555567788899999999999999999999999888888777665433566677778


Q ss_pred             HHHhhcccchhhHHHHHHhhhccCC-------cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          305 AFMGIGEGVAMPAMNNMLSKWIPVS-------ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       305 ~l~Gig~g~~~~~~~~~i~~~~~~~-------~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ++.|+|.+...+...++++|..|.+       ++|..+|+.+....+|..+|+.+.+.+.+..|+
T Consensus       327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999988654       358999999999999999999999998876654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.98  E-value=2.8e-08  Score=103.95  Aligned_cols=169  Identities=14%  Similarity=0.052  Sum_probs=114.5

Q ss_pred             HHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh-hc--
Q 009469          217 LLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV-AA--  293 (534)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~-~~--  293 (534)
                      ++.+.....++..+|.+.++ ..+.........+..+...+..+++|+++||+|+|+++.++.++..++.+.... .+  
T Consensus       262 ~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        262 LATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33434444445555555433 223333333344556778888999999999999999999888877776643222 22  


Q ss_pred             -cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccC---------------------CcchhHHHHHHHHHHHHHHHHHH
Q 009469          294 -RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV---------------------SERSRSLAFVYSGMYLGSVTGLA  351 (534)
Q Consensus       294 -~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~---------------------~~rg~~~gi~~~~~~lG~~igp~  351 (534)
                       ..+++.+.+..+...++.|........++.+++|+                     ++-|.+.|+..+...+|+.+-|.
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~  420 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ  420 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence             12355555555555556666666777888888864                     15678899999999999999998


Q ss_pred             HHHHhhcccC-chHHHHHHHHHHHHHHHHHHHhhcC
Q 009469          352 VSPILIQKFG-WPSVFYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       352 i~~~l~~~~g-w~~~f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      +.+...+..| +...|+++.+..+++.++.+....+
T Consensus       421 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        421 AFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888777654 7788888888888887776665443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.97  E-value=1.9e-08  Score=103.65  Aligned_cols=138  Identities=17%  Similarity=0.271  Sum_probs=102.6

Q ss_pred             HHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc---cCChHHHHH
Q 009469          227 SIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA---RIGLPFLLI  302 (534)
Q Consensus       227 ~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~---~~~~~~ll~  302 (534)
                      ....|. +.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.++..++.+++.+..   ..++..+++
T Consensus       226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG  305 (385)
T ss_pred             HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            334454 4567899999999999999999999999999999999999999888887777766655432   113445556


Q ss_pred             HHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCchHHH
Q 009469          303 MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVF  366 (534)
Q Consensus       303 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~gw~~~f  366 (534)
                      ..++.|++.+...+.......|..| ++++++.++.+..... |.+.++. .+.+.+..+|...+
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~  368 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHH
Confidence            6778889888888888888888885 6899999998876655 5555555 44554444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10133 L-fucose transporter; Provisional

Probab=98.97  E-value=2.8e-08  Score=104.85  Aligned_cols=141  Identities=11%  Similarity=0.083  Sum_probs=113.2

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccc
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~  313 (534)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.+  +. ..+..-++.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GH-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--Ch-HHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999888888777666655554  33 234556788999999


Q ss_pred             hhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHHHHH
Q 009469          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFAL  379 (534)
Q Consensus       314 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~~i~  379 (534)
                      .+|...+...+.+|+ +.+.+.++... ..+|+.++|.+.|.+.+..| -+..|++..+..+.....
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            999999999999854 56777887764 44788899999999999887 788887655555444443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.94  E-value=3.8e-08  Score=102.08  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=93.0

Q ss_pred             HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhccc
Q 009469          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEG  312 (534)
Q Consensus       233 ~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g  312 (534)
                      +.+++|.++.+.+++.+...++..++.++.+++.||+|+|+++.++.++..++.++..+.+  +.+..+..-++.++|.+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP--SHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999998888887777765  33333333344444433


Q ss_pred             chhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 009469          313 VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG  373 (534)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~  373 (534)
                      ...+.  ....+..|.++|+   +...+...++..+|+.+++++.+..|+.....+.+.+.
T Consensus       308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            33332  2334444544443   44445556777778888888887778776555544433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.93  E-value=4e-08  Score=104.78  Aligned_cols=143  Identities=11%  Similarity=-0.004  Sum_probs=107.6

Q ss_pred             HhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhh---hccCC
Q 009469          220 NMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---AARIG  296 (534)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~---~~~~~  296 (534)
                      ...........+++.++...+....+++.++..++.+++.+++++++||+|+|+.+.++.++.+++.+...+   ....+
T Consensus       244 ~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (473)
T PRK10429        244 NIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHN  323 (473)
T ss_pred             HHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence            344444455555555554445666777777777888999999999999999999999888876666555432   22224


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhcc-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      .+.+++.-++.|++.+...+...++++|..+       .++.|..+|......-+|..+++.+.|++.+..|+
T Consensus       324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6667777788899999999999999999965       33346688999999999999999999998876654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.92  E-value=1.7e-08  Score=107.30  Aligned_cols=171  Identities=12%  Similarity=0.047  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH--------HHHHHH
Q 009469          211 LCFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVL--------GFGVIW  281 (534)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l--------~~g~~~  281 (534)
                      ...+..+......+.+...+|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  344 (465)
T TIGR00894       265 AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGG  344 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            33344444444445555566654 567899999999999999999999999999999998754321        111111


Q ss_pred             HHHHHHH--HhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          282 WSVATVL--TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK  359 (534)
Q Consensus       282 ~~i~~~l--~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~  359 (534)
                      ...+.++  ..... .+....+++-.+.+.+.+...+.......+..| +.+|.++++.+....+|+.++|.+.+.+.+.
T Consensus       345 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       345 LGPGIFAYALPYLS-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHHHHHHHHHHHcC-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            1111111  11111 133333444445555555455555555567774 5899999999999999999999999998765


Q ss_pred             c---CchHHHHHHHHHHHHHHHHHHHh
Q 009469          360 F---GWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       360 ~---gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      .   +|...|++.+++.++..++....
T Consensus       423 ~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       423 DSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            3   37888888877776665555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.92  E-value=2.4e-08  Score=107.15  Aligned_cols=133  Identities=13%  Similarity=0.121  Sum_probs=112.7

Q ss_pred             HHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc-cCChHHHHHH
Q 009469          226 MSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-RIGLPFLLIM  303 (534)
Q Consensus       226 ~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~-~~~~~~ll~~  303 (534)
                      .....|. ++..+|.++.+.|+....+.++..++.++.|++.||+|+|+++..+.++.+++.+++.+.. ..+.+..++.
T Consensus       278 ~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  357 (495)
T PRK14995        278 FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGL  357 (495)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            3344454 4566899999999999999999999999999999999999999999888887776655432 2245556677


Q ss_pred             HHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       304 r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      .++.|+|.+...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus       358 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        358 MALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999888889999999999999999999999999999999999998865

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.92  E-value=7e-08  Score=99.30  Aligned_cols=158  Identities=11%  Similarity=0.008  Sum_probs=105.2

Q ss_pred             HHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCC---chHHH-HHHHHHHHHHHHHhh
Q 009469          216 FLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG---KPVLG-FGVIWWSVATVLTPV  291 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr---r~~l~-~g~~~~~i~~~l~~~  291 (534)
                      .++.....+.+...+|.+.++.|.+.. .+...++..+...++   .++++||..|   |+... ...++.++..++.++
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~  276 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555667777677777754 555555555544444   4677777654   33333 234444444444444


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHH
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS  371 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~  371 (534)
                      ..  +....++.-.+.|++....++...++.+|.+|++.|++++|+.+....+|++++|++.+.+..  |....|.+.++
T Consensus       277 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~  352 (368)
T TIGR00903       277 EL--NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAI  352 (368)
T ss_pred             cc--ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHH
Confidence            44  333344555666777777777788999999999999999999999999999999999988773  66778888777


Q ss_pred             HHHHHHHHHH
Q 009469          372 LGSIWFALWL  381 (534)
Q Consensus       372 ~~~i~~i~~~  381 (534)
                      ..++..+..+
T Consensus       353 ~~~i~~~~~~  362 (368)
T TIGR00903       353 LITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHH
Confidence            7766655543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.90  E-value=7.2e-09  Score=106.48  Aligned_cols=150  Identities=17%  Similarity=0.177  Sum_probs=135.6

Q ss_pred             HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhccc
Q 009469          233 MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEG  312 (534)
Q Consensus       233 ~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g  312 (534)
                      -.++.+..+...|.+......+-++.-++.+++.+|+|+-+++.+++.+.++=.+..+...  |+|+.+..-+++|+..+
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~a  474 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHA  474 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHH
Confidence            3677887888889888888899999999999999999999999999999999888888888  89999999999999999


Q ss_pred             chhhHHHHHHhhhccCCcchhHHHHHHH-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 009469          313 VAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      ..|.++.+|+++..||+-|..+.+++.. ..++|-.+|.+|+|.+..++|-+..|++.++.+++.+++.....
T Consensus       475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999776 67789999999999999999999999999988887777665443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.89  E-value=9.1e-09  Score=100.97  Aligned_cols=132  Identities=12%  Similarity=0.137  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHH--HHHHHHHHhhcccchhhHHHHHHhhhcc
Q 009469          250 SFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF--LLIMRAFMGIGEGVAMPAMNNMLSKWIP  327 (534)
Q Consensus       250 ~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~--ll~~r~l~Gig~g~~~~~~~~~i~~~~~  327 (534)
                      +..+.-..|.++.+++.||+|||+.|..+.+++++..++...+...|...  +.++|++.    ++.+.+++.|..|.+|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYP  464 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccc
Confidence            33456667889999999999999999999999999998888776544422  33445444    4455667889999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCC
Q 009469          328 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS  387 (534)
Q Consensus       328 ~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~  387 (534)
                      .+-|+.+.|....+..+|+++.|+++ ...+ ..-..+..+.+.++++..+...+++.++
T Consensus       465 TavRatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  465 TAVRATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999999999999998 3322 2333445556666666666665555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.88  E-value=7.3e-06  Score=86.05  Aligned_cols=279  Identities=8%  Similarity=0.028  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCC-----CcchhHHHHHHHHHHHHHH-HHHHHHHHhhhCCchHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNW-----NSTTVGLIQSSFFWGYLLT-QIVGGIWADKFGGKPVLGFGV  279 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~i~s~~~l~~~~~-~~~~G~l~Dr~Grr~~l~~g~  279 (534)
                      +..++...+..|+..+.++.    +-++.+.+.+     +...+.++.+...+...+. .++.+++++|++|++++.+..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            34444445555554444443    3345555554     3457888888887777666 889999999999999987777


Q ss_pred             HHHHHHHHHHhhhc----cC-------------------------ChHHHHHHHHHHhhcccchhh-HHHHHHhhhccCC
Q 009469          280 IWWSVATVLTPVAA----RI-------------------------GLPFLLIMRAFMGIGEGVAMP-AMNNMLSKWIPVS  329 (534)
Q Consensus       280 ~~~~i~~~l~~~~~----~~-------------------------~~~~ll~~r~l~Gig~g~~~~-~~~~~i~~~~~~~  329 (534)
                      ..+.+..+++++.-    +.                         +.|..-+.-+...+-...... .-.++.+|.++.+
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~  161 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID  161 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            66666666655441    00                         122222333344444444554 7788999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcc-------c-Cch----HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHH
Q 009469          330 ERSRSLAFVYSGMYLGSVTGLAVSPILIQK-------F-GWP----SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE  397 (534)
Q Consensus       330 ~rg~~~gi~~~~~~lG~~igp~i~~~l~~~-------~-gw~----~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  397 (534)
                      +-.+-++++..+.++|.++++.+..++.+.       . .|.    +.+.+.++...+...+.....+.. ..++.....
T Consensus       162 qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~  240 (472)
T TIGR00769       162 EAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNP  240 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccch
Confidence            999999999999999999999998887631       1 232    223333333333333333322222 111110000


Q ss_pred             HHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh----hHHHHHHHHHHH
Q 009469          398 EKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE----SGLFCVLPWLTM  473 (534)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~----~g~l~~~~~~~~  473 (534)
                      ++   .......+......++.++++|.++.+++...++......+....-..+.+.+- ++.+    .|.+....++..
T Consensus       241 ~~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~~~~~~f~g~~~~~~gi~t  316 (472)
T TIGR00769       241 AL---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SPNEYSAFMGDFSTWTGVVS  316 (472)
T ss_pred             hh---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
Confidence            00   000111111223467788999988888888888877776666655555665443 3322    233444445556


Q ss_pred             HHHHHHHHHHHHHhhcccch
Q 009469          474 AVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       474 iig~~i~g~l~dr~g~r~~~  493 (534)
                      ++..++.+++.+|+|-+...
T Consensus       317 l~~~l~~~~l~~~~Gw~~~a  336 (472)
T TIGR00769       317 VTMMLLSGNVIRKYGWLTAA  336 (472)
T ss_pred             HHHHHHHHHHHHHhhHHHHH
Confidence            66666778999999877543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.87  E-value=1.4e-08  Score=102.94  Aligned_cols=129  Identities=17%  Similarity=0.280  Sum_probs=108.1

Q ss_pred             hhhHHHHhHHHH-HhhhCCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccC-ChH
Q 009469          222 DRVNMSIAILPM-SKEFNWN-STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLP  298 (534)
Q Consensus       222 ~~~~~~~~~~~~-~~~~g~s-~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~-~~~  298 (534)
                      .........|.+ .+++|.+ ..+.+++.++..++..++.++.|++.||+|+|+.+.+......+..+...+.... +..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            344456666665 8889999 7899999999999999999999999999999888877777777766666554321 345


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH
Q 009469          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL  350 (534)
Q Consensus       299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp  350 (534)
                      ..++..++.|++.+...+...+++.+.+|+++||++.|+.+...++|..+||
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            5666788899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.86  E-value=4.6e-08  Score=100.04  Aligned_cols=123  Identities=14%  Similarity=0.091  Sum_probs=97.7

Q ss_pred             hhhhHHHHhHHHHHhhhCCCcchhHHHHHHHH-HHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh-cc----
Q 009469          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFF-WGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA-AR----  294 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~-l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~-~~----  294 (534)
                      ...+......|.+.+++|.+..+++.+.++.. ++..++.+++|++.||+|+|+.+.++.++.+++..+..+. .+    
T Consensus       223 ~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       223 LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            33334445566665669999999998887665 6778999999999999999999988888877776655443 11    


Q ss_pred             ----CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHH
Q 009469          295 ----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMY  343 (534)
Q Consensus       295 ----~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~  343 (534)
                          .+.+.++.+.++.+++.+...+...+++.+.+|+++||+.+|++++..+
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence                1456677788888999999999999999999999999999999887654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=1e-07  Score=100.17  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=120.4

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      ..++............+++.++ ++.+ ...+++..+..++..++.+++++++||+|+|+++..+.++.+++.++..+..
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  311 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG  311 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH
Confidence            3344444555555556666555 4544 6778888899999999999999999999999999999999999998888775


Q ss_pred             cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccC-------CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV-------SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ..+.+.+++..++.|++.+..++...++++|..+.       ++.|..+|+......+|..+++.+.+.+.+..|+
T Consensus       312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            34788899999999999999999999999999863       3458889999999999999999999988776554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.85  E-value=2.3e-06  Score=83.71  Aligned_cols=155  Identities=30%  Similarity=0.572  Sum_probs=124.7

Q ss_pred             hhhhHHHHhHHHHHhhhCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChH
Q 009469          221 MDRVNMSIAILPMSKEFNWNS--TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~--~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~  298 (534)
                      ..........+.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++++....+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            555566667777777777666  488999999999999999999999999999988888887656666666666522378


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHhhhccC-CcchhHHHHHHH-HHHHHHHHHHHHHHHhhcc--cCchHHHHHHHHHHH
Q 009469          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPV-SERSRSLAFVYS-GMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLGS  374 (534)
Q Consensus       299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~-~~rg~~~gi~~~-~~~lG~~igp~i~~~l~~~--~gw~~~f~i~~~~~~  374 (534)
                      .+++.|++.|++.+...+...+++.+++|+ ++|+...+.... ...+|..++|.+++.+...  .+|++.|.+......
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            899999999999999999999999999977 688999998888 5888889999888777654  578886666555544


Q ss_pred             H
Q 009469          375 I  375 (534)
Q Consensus       375 i  375 (534)
                      .
T Consensus       176 ~  176 (338)
T COG0477         176 L  176 (338)
T ss_pred             H
Confidence            3

>PRK09669 putative symporter YagG; Provisional

Probab=98.84  E-value=2.1e-07  Score=98.42  Aligned_cols=134  Identities=11%  Similarity=0.097  Sum_probs=99.3

Q ss_pred             hHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHh
Q 009469          229 AILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMG  308 (534)
Q Consensus       229 ~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~G  308 (534)
                      ..+++.++.--.+...+.+.....+...++.+++++++||+|+|+.+.++.++.++..+...+.+..+.+.+++..++.|
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  330 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN  330 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            33444333322334445566667788888899999999999999999888876665444333332225666778888999


Q ss_pred             hcccchhhHHHHHHhhhccC-------CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          309 IGEGVAMPAMNNMLSKWIPV-------SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       309 ig~g~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ++.+...+...++++|..+.       +..|..+|+......+|..+|+.+++.+.+..|+
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998852       2346678888889999999999999999887765

>PRK11043 putative transporter; Provisional

Probab=98.83  E-value=3.1e-07  Score=95.59  Aligned_cols=136  Identities=14%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH---hhhccCChHHHHHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIM  303 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~---~~~~~~~~~~ll~~  303 (534)
                      ....|.+.+++|.+..+.++....+.++..++.++.+++.||+|+|+.+....++.+++.+.+   ......+++.+++.
T Consensus       223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            344566677789999999998888889999999999999999999987665555444443322   22111245555566


Q ss_pred             HHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       304 r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      ..+.|++.+..++...+...+..| +++|+++|+++.....++.+++.+.+.+.+.....
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhH
Confidence            677788888888888888777774 68999999999988888889999999887754333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.82  E-value=2.8e-07  Score=98.22  Aligned_cols=176  Identities=14%  Similarity=0.115  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHH-hhhCCCc----chhHHHHHHHHHHHHHHHHHHHHHHhhhCC-----chHH--HH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMS-KEFNWNS----TTVGLIQSSFFWGYLLTQIVGGIWADKFGG-----KPVL--GF  277 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~----~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-----r~~l--~~  277 (534)
                      +..++..++.+.........++.+. ++.+.+.    ...+++.++..+...+.+++..++..+.+|     +...  .+
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~  354 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTL  354 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Confidence            3333334444444444444445443 3334332    226788999988888888886654444443     3333  77


Q ss_pred             HHHHHHHHHHHHhhh-------ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH
Q 009469          278 GVIWWSVATVLTPVA-------ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL  350 (534)
Q Consensus       278 g~~~~~i~~~l~~~~-------~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp  350 (534)
                      |.++.+++.+..++.       ...+++.++...++.|+|.....|...+++.+..|++.||+++|++.....+|..+++
T Consensus       355 G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~  434 (475)
T TIGR00924       355 GMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGG  434 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887776642       0137888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469          351 AVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       351 ~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      .+........+|.+.|...+++.++..++.+...+
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       435 YLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99988877778888888888777776666655433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.79  E-value=2.5e-07  Score=95.22  Aligned_cols=123  Identities=11%  Similarity=0.077  Sum_probs=86.8

Q ss_pred             HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh--ccCChHHHHHHHHHHhh
Q 009469          232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPFLLIMRAFMGI  309 (534)
Q Consensus       232 ~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~--~~~~~~~ll~~r~l~Gi  309 (534)
                      .+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+++.++.++..+..+.....  ...+.+.++++-.+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3566789999999999999999999999999999999999999888877654433222211  11134444444444444


Q ss_pred             cccchhhHHHHHHhhhccCCcchhHHHHHHHH-HHHHHHHHHHHHHH
Q 009469          310 GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSG-MYLGSVTGLAVSPI  355 (534)
Q Consensus       310 g~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~-~~lG~~igp~i~~~  355 (534)
                      +.+.........+.|..| ++++.+.++.... ..+|..+++++++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445555566677777775 7899999987653 45777777776553

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.79  E-value=3.6e-06  Score=87.31  Aligned_cols=284  Identities=9%  Similarity=0.005  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHhhhC-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH----H
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFN-WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS----V  284 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~----i  284 (534)
                      ..+....++...+.-++....+.+..+.. -+---.+...-.-.+..+++++..|.+.||..|.+++..+.++--    +
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~   84 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAA   84 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHH
Confidence            34455666777777778888777666553 244444555555667777888999999999999988666544322    2


Q ss_pred             HHHHHh--hhccC-----Ch--HHHHHHHHHHhhcccc-hhhHHHHHHhhhc------cCCcchhHHHHHHHHHHHHHHH
Q 009469          285 ATVLTP--VAARI-----GL--PFLLIMRAFMGIGEGV-AMPAMNNMLSKWI------PVSERSRSLAFVYSGMYLGSVT  348 (534)
Q Consensus       285 ~~~l~~--~~~~~-----~~--~~ll~~r~l~Gig~g~-~~~~~~~~i~~~~------~~~~rg~~~gi~~~~~~lG~~i  348 (534)
                      ++.+..  +....     +.  ..+++.-.+.|.-.-. ......++--||.      ++..+.+..+.+.-.=-+.-++
T Consensus        85 s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll  164 (432)
T PF06963_consen   85 SCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL  164 (432)
T ss_pred             HHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence            222211  11110     11  1112222222221111 1122223333443      2344556666666667788999


Q ss_pred             HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc---C-CC---CCChhhhHHHHhhhhC-CCccc-----------
Q 009469          349 GLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY---S-SP---KEDPELRAEEKRHILG-GSISK-----------  409 (534)
Q Consensus       349 gp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~---~-~~---~~~~~~~~~~~~~~~~-~~~~~-----------  409 (534)
                      +|++.|.+.+..+.....++.++..++..++=++...   + .|   .+++....+....... .....           
T Consensus       165 aPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (432)
T PF06963_consen  165 APLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNP  244 (432)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccchhhHHHHHHHH
Confidence            9999999999888888887777777666554332211   1 11   1111000000000000 00000           


Q ss_pred             cccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          410 EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS  489 (534)
Q Consensus       410 ~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~  489 (534)
                      -......|+..++.+.+ ...++..+.++...++......|+... |+++...|.+-....+.++.+.++..++.+|+|.
T Consensus       245 ~~~~~~~w~~Y~~q~vf-las~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGl  322 (432)
T PF06963_consen  245 LRTIIRGWRTYFRQPVF-LASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGL  322 (432)
T ss_pred             HHHHhccHHHHHhCHHH-HHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            00112346666666544 444444444555666677888899885 9999999999999999999999999999999997


Q ss_pred             ccchHH
Q 009469          490 KGLSIT  495 (534)
Q Consensus       490 r~~~i~  495 (534)
                      .+.-..
T Consensus       323 vr~G~~  328 (432)
T PF06963_consen  323 VRAGLW  328 (432)
T ss_pred             hhhHHH
Confidence            775443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.78  E-value=5.7e-07  Score=91.21  Aligned_cols=283  Identities=13%  Similarity=0.069  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hCCchH-HHHHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGKPV-LGFGVIW  281 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr----~Grr~~-l~~g~~~  281 (534)
                      +.++......+..-+.+..-..+.+++.+++|++....+.+.....+...+.+|+.|..+||    |||||. +..+.+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            33444444445555566666677888899999999999999998899999999999999996    787765 4566666


Q ss_pred             HHHHHHHHhhhccC---------------ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchh-HHHHHHHHHHHH
Q 009469          282 WSVATVLTPVAARI---------------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSR-SLAFVYSGMYLG  345 (534)
Q Consensus       282 ~~i~~~l~~~~~~~---------------~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~-~~gi~~~~~~lG  345 (534)
                      .+++.++..++...               ....++++.-+.-++.-..+.++-+++.|....+++.+ +++++..+.++|
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            77777777766421               01234444555556666788899999999998777777 999999999999


Q ss_pred             HHHHHHHHHHhhcccCchH--HHHHHHHHHHHHHHH------HHHh-hcCC------CCCChhhhH-HHHhhhhCCCccc
Q 009469          346 SVTGLAVSPILIQKFGWPS--VFYSFGSLGSIWFAL------WLKK-AYSS------PKEDPELRA-EEKRHILGGSISK  409 (534)
Q Consensus       346 ~~igp~i~~~l~~~~gw~~--~f~i~~~~~~i~~i~------~~~~-~~~~------~~~~~~~~~-~~~~~~~~~~~~~  409 (534)
                      +++|..+++++    +|+-  .|.......+.+..+      ...+ ...+      +.+++...+ ...+...... ..
T Consensus       192 nvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~~~~~~~-~~  266 (498)
T KOG0637|consen  192 NVLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTARSKSSKL-PF  266 (498)
T ss_pred             ceeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccccccccCc-ch
Confidence            99998888743    3321  121111111111110      0000 0000      000000000 0000000000 00


Q ss_pred             cccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChhh----------------hHHHHHHHHHH
Q 009469          410 EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ-VLKFNLTE----------------SGLFCVLPWLT  472 (534)
Q Consensus       410 ~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~-~~g~s~~~----------------~g~l~~~~~~~  472 (534)
                      -......+  ...++..+.+++...+.+.+.+.+.-|...++-+ .++-++..                ..+=+.+..+.
T Consensus       267 ~~e~fG~~--~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~  344 (498)
T KOG0637|consen  267 LLEIFGAL--KVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIV  344 (498)
T ss_pred             HHHHhchH--hhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHH
Confidence            00000011  1235778999999999888888877777666643 34433221                12334556667


Q ss_pred             HHHHHHHHHHHHHHhhcccchHHH
Q 009469          473 MAVFANMGGWIADTLVSKGLSITA  496 (534)
Q Consensus       473 ~iig~~i~g~l~dr~g~r~~~i~~  496 (534)
                      ..+.+....++.+|+|-|+....+
T Consensus       345 lgi~S~~~~~l~~~~g~r~~y~~~  368 (498)
T KOG0637|consen  345 LGIYSLLVEKLSRKFGTRKRYWGG  368 (498)
T ss_pred             HHHHHHHHHHHHHhcCcceEEeeh
Confidence            777788889999999955544433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.72  E-value=1.5e-06  Score=85.93  Aligned_cols=175  Identities=14%  Similarity=0.120  Sum_probs=134.8

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIW  281 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~~  281 (534)
                      +..|.+.+...+    ..+..+.+-..+|.+..|-|+|+.+.|++.+...+......+....+.+|. .+|+..+...++
T Consensus       208 ~~aW~vtLfmGl----qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         208 PLAWQVTLFMGL----QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             chhHHHHHHHHh----hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            344555443333    334445566678999999999999999999999999999999999999965 577888888888


Q ss_pred             HHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          282 WSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS-ERSRSLAFVYSGMYLGSVTGLAVSPILIQKF  360 (534)
Q Consensus       282 ~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~-~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~  360 (534)
                      +.++.+.+.+.+...+  ++ .-+++|+|.|..++.+..++.+..+.. +-+.-.|+.+...++=..+||.+.|++.|..
T Consensus       284 ~l~G~~G~~~~P~~~~--~l-w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         284 MLVGLVGLLLAPGQLP--IL-WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHhhhhHH--HH-HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            8888888888773222  22 248999999999999999999988644 4456667777777788889999999999976


Q ss_pred             -CchHHHHHHHHHHHHHHHHHHHhh
Q 009469          361 -GWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       361 -gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                       +|+...+..+...+++.+..+...
T Consensus       361 gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         361 GSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhhcc
Confidence             488888877777766666655543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=4.9e-08  Score=97.10  Aligned_cols=162  Identities=18%  Similarity=0.134  Sum_probs=126.8

Q ss_pred             HhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC--CchHHHHHHHHHHHHHHHHhhhccCC
Q 009469          220 NMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG--GKPVLGFGVIWWSVATVLTPVAARIG  296 (534)
Q Consensus       220 ~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G--rr~~l~~g~~~~~i~~~l~~~~~~~~  296 (534)
                      .......-+.++. +.+.+..+..++|+.+--..+.+.++..+.|.++||++  |-.....+.+...+......+++  +
T Consensus       283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~--~  360 (464)
T KOG3764|consen  283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT--S  360 (464)
T ss_pred             cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh--h
Confidence            3444445555555 46777866679999999999999999999999999999  43334455555566666667777  7


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhccCC------cchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS------ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG  370 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~------~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~  370 (534)
                      +..+++-++..|++.+...+.....+....+.+      -.|...++...++.+|..+||.++|.+.+.+|++|...+.+
T Consensus       361 ~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig  440 (464)
T KOG3764|consen  361 IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG  440 (464)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence            888999888888888877776666666666433      45788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 009469          371 SLGSIWFALWLKK  383 (534)
Q Consensus       371 ~~~~i~~i~~~~~  383 (534)
                      +..++...+...+
T Consensus       441 ~~n~iyapvl~ll  453 (464)
T KOG3764|consen  441 ILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888776665554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.67  E-value=1e-06  Score=91.52  Aligned_cols=128  Identities=15%  Similarity=0.051  Sum_probs=95.2

Q ss_pred             HHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH-HHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhc
Q 009469          232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG  310 (534)
Q Consensus       232 ~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig  310 (534)
                      .+.+.+|.++.+.+++.....++..++.++.+++.||++++.... .+.++..+...........+.+.+++..++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            344558999999999999999999999999999999998333222 1222222222222222212456677778889999


Q ss_pred             ccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          311 EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF  360 (534)
Q Consensus       311 ~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~  360 (534)
                      .+...+...++..+.+| +++|.+.++.+....+|..+++.+++.+....
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            99889999999999885 68899999999999999999999999886653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.64  E-value=1.2e-06  Score=91.58  Aligned_cols=143  Identities=10%  Similarity=0.002  Sum_probs=104.2

Q ss_pred             HHHhHHHHHhhh--CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHH
Q 009469          226 MSIAILPMSKEF--NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM  303 (534)
Q Consensus       226 ~~~~~~~~~~~~--g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~  303 (534)
                      ....++.+.++.  +.+....+...+.+..+..++.++++++.||+++|+++.++.++.++..++..+.+  +.. .+.+
T Consensus       251 ~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--~~~-~~~~  327 (410)
T TIGR00885       251 CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--GHV-GLYC  327 (410)
T ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--ChH-HHHH
Confidence            344455554444  33444445566777788899999999999999999999888888888888777766  433 3566


Q ss_pred             HHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc------CchHHHHHHHHHH
Q 009469          304 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF------GWPSVFYSFGSLG  373 (534)
Q Consensus       304 r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~------gw~~~f~i~~~~~  373 (534)
                      -++.|++.+..+|...++..+..+++.+..+.++..+  .+|+.++|++.|++.|..      +.+..|++..+..
T Consensus       328 l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       328 LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            6777888888999999999999965554334444333  399999999999999954      4677777644433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.63  E-value=3.1e-07  Score=97.64  Aligned_cols=128  Identities=14%  Similarity=0.145  Sum_probs=110.0

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc-c-------CChHHHHHHHH
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-R-------IGLPFLLIMRA  305 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~-~-------~~~~~ll~~r~  305 (534)
                      .+.+|.++.++|++.....++..++..+.+++.+|++.|+++.++.++.+++.+...... .       .+.+.++...+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            356899999999999999999999999999999999999999999999988775543111 0       12334556677


Q ss_pred             HHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          306 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       306 l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      +.+++.+..+.+...++.+..|++.+|+.++++.+..++|..+++.+++.+.+..|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888889999999999999999999999999999999999999999998776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.59  E-value=4.7e-06  Score=88.48  Aligned_cols=136  Identities=12%  Similarity=0.028  Sum_probs=90.2

Q ss_pred             HHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 009469          227 SIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       227 ~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      +....++.++..-++...+++...+.++.+++.+++++++||+|+|+++..+.++.++..++..+.+..+...+++.-++
T Consensus       248 ~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  327 (460)
T PRK11462        248 GGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFV  327 (460)
T ss_pred             HhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            33344443433333445566777888888999999999999999999877655544443434333332223334445566


Q ss_pred             HhhcccchhhHHHHHHhhhcc-------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          307 MGIGEGVAMPAMNNMLSKWIP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~-------~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      .|++.+...+...++++|..+       .++-|..++......-+|..+++.+++.+.+..|+
T Consensus       328 ~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        328 IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            787777766666777887765       22335556777788889999999999988876554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.56  E-value=2.5e-06  Score=88.56  Aligned_cols=148  Identities=15%  Similarity=0.101  Sum_probs=117.4

Q ss_pred             HHHHHHhhhhHHHHhHHHHHh-hhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAILPMSK-EFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      ..++.....+..+....++.+ .+|.+.....+.......+..++.+++.++.+|+|+|+++.++.++++++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            344444555555666565543 3576777777788888888888899999999999999999999999999999998887


Q ss_pred             cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccC-------CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 009469          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV-------SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW  362 (534)
Q Consensus       294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~-------~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw  362 (534)
                      ..+.+.+++..++.++|.+...+...++++|..+-       +.-|...|......=+|..++..+.+++....|+
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55678888888999999999999999999988752       2236777787778888999998888888776553

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=1.5e-05  Score=82.85  Aligned_cols=233  Identities=13%  Similarity=0.044  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhc
Q 009469          247 IQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI  326 (534)
Q Consensus       247 i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~  326 (534)
                      ..++.+..+.+.+++.+.+.|+.|.|+.++++...+....+.+.+.   |-+.+++...+.|+|.+..+.....++++..
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~ylt~~s  131 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYLTSNS  131 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceehhhcC
Confidence            3778888889999999999999999999999999999888776665   4566889999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC--------ch-HH----------HHHHHHHHHHHHHHHHHhhcCC
Q 009469          327 PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG--------WP-SV----------FYSFGSLGSIWFALWLKKAYSS  387 (534)
Q Consensus       327 ~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g--------w~-~~----------f~i~~~~~~i~~i~~~~~~~~~  387 (534)
                      +++.+.+..++..+....+.++|..+...+...-+        -+ +.          ..+.+++..+..+....... .
T Consensus       132 t~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~-~  210 (461)
T KOG3098|consen  132 TRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF-L  210 (461)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee-c
Confidence            99999999999999888888888766554433211        11 11          11111111111111111111 1


Q ss_pred             CCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCC-hhhhHH
Q 009469          388 PKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFN-LTESGL  464 (534)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~--~g~s-~~~~g~  464 (534)
                      +.+......+.. +      ..........-+++++++.+.+....+...+.........|..+.-.  .+.+ ....++
T Consensus       211 p~~~~~~~~~~~-~------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai  283 (461)
T KOG3098|consen  211 PSKDVVNCKSSS-E------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAI  283 (461)
T ss_pred             Cccchhhhhhhc-c------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHH
Confidence            111110000000 0      00000111233456777777777776666555544555555544332  2222 233455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009469          465 FCVLPWLTMAVFANMGGWIADTLVSK  490 (534)
Q Consensus       465 l~~~~~~~~iig~~i~g~l~dr~g~r  490 (534)
                      .....+++.+++.+..+.+.+|.++.
T Consensus       284 ~~~~~g~g~v~~g~~~~~l~~rir~f  309 (461)
T KOG3098|consen  284 YSIGIGLGEVIGGLDFSILSKRIRGF  309 (461)
T ss_pred             HHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence            55566677777778788887766443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.52  E-value=6e-07  Score=91.89  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=87.2

Q ss_pred             HHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccC--ChHHHHH
Q 009469          226 MSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI--GLPFLLI  302 (534)
Q Consensus       226 ~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~--~~~~ll~  302 (534)
                      +....|. +.+.+|.++.+.+++.++..+...++.+++|+++||+|+|+.+..+.++.+.+.++..+....  +.+.+++
T Consensus       244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (366)
T TIGR00886       244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV  323 (366)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            3344444 456789999999999999999999999999999999999988887777766666555543321  3444444


Q ss_pred             HHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHH
Q 009469          303 MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLG  345 (534)
Q Consensus       303 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG  345 (534)
                      ..++.+++.+...+...+++++.+| +++|.++|+.+....+|
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            4455555555556667778888885 69999999988876654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.49  E-value=2.5e-06  Score=91.56  Aligned_cols=139  Identities=13%  Similarity=0.102  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh----hhCCchHHHHHHHHHHHHHHHHhhhcc-------CChHHHHHHHHHHhhccc
Q 009469          244 VGLIQSSFFWGYLLTQIVGGIWAD----KFGGKPVLGFGVIWWSVATVLTPVAAR-------IGLPFLLIMRAFMGIGEG  312 (534)
Q Consensus       244 ~g~i~s~~~l~~~~~~~~~G~l~D----r~Grr~~l~~g~~~~~i~~~l~~~~~~-------~~~~~ll~~r~l~Gig~g  312 (534)
                      .+++.++..+...+..++.+++.+    |++..+.+.+|.++.+++.++.++...       .+.+.++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            567777787777777777654444    445557788999999999888766642       124578889999999999


Q ss_pred             chhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----------ccCchHHHHHHHHHHHHHHHHHHH
Q 009469          313 VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ----------KFGWPSVFYSFGSLGSIWFALWLK  382 (534)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~----------~~gw~~~f~i~~~~~~i~~i~~~~  382 (534)
                      ...|...+++.+..|++.||+++|++.....+|..++..+......          ..+..+.|...+++.++..++++.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877777777666643221          113567777777666555444443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.6e-06  Score=80.42  Aligned_cols=244  Identities=15%  Similarity=0.148  Sum_probs=143.6

Q ss_pred             hhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHH
Q 009469          222 DRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLL  301 (534)
Q Consensus       222 ~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll  301 (534)
                      +....++..-++-+.+|....++|.++........+...+.|.++|+.|||+.-+.-++.+.+++ +.-.++  .+-.++
T Consensus        52 gDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSp--qYkVLm  128 (454)
T KOG4332|consen   52 GDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSP--QYKVLM  128 (454)
T ss_pred             hhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCC--ceEEEe
Confidence            33445566666677889999999998888888888899999999999999997666555555443 233344  677899


Q ss_pred             HHHHHHhhcccchhhHHHHH-HhhhccCCcchhHHHHHH--------HHHHHHHHHHHHHHHHhhccc--CchHHHHHHH
Q 009469          302 IMRAFMGIGEGVAMPAMNNM-LSKWIPVSERSRSLAFVY--------SGMYLGSVTGLAVSPILIQKF--GWPSVFYSFG  370 (534)
Q Consensus       302 ~~r~l~Gig~g~~~~~~~~~-i~~~~~~~~rg~~~gi~~--------~~~~lG~~igp~i~~~l~~~~--gw~~~f~i~~  370 (534)
                      ++|++.|+..+..+.+.-++ +.|.-  ++|+.-.-+..        .+..+-.+++.+.+-.+.+.+  |.-.+|-..+
T Consensus       129 VGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa  206 (454)
T KOG4332|consen  129 VGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA  206 (454)
T ss_pred             ehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence            99999999999888887764 44543  33433222211        233444555666666666654  3445555444


Q ss_pred             HHHHHHHHHHHHhhcC---CCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHH-H
Q 009469          371 SLGSIWFALWLKKAYS---SPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT-W  446 (534)
Q Consensus       371 ~~~~i~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~-~  446 (534)
                      .+..+...+.+....+   +|.+.+.....-+               ...+.+..++++.++.....+.-...+.+.+ |
T Consensus       207 cfLaigmAvil~~W~ENygdps~~kdlltqf~---------------gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLW  271 (454)
T KOG4332|consen  207 CFLAIGMAVILSSWSENYGDPSENKDLLTQFK---------------GAARAIASDEKIALLGAIQSLFEGSMYTFVFLW  271 (454)
T ss_pred             HHHHHHHHHHHhhhhhccCChhhhHHHHHHhh---------------HhHHHHhcchHHHHHHHHHHHHhhhhheeeeee
Confidence            4444444333322221   1211111111100               1233456677776666665555555544433 3


Q ss_pred             HHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          447 MPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV  488 (534)
Q Consensus       447 lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g  488 (534)
                      .|..-.+.   ...--|.+++-+.++.++|.-+..++..|-.
T Consensus       272 TPaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s~  310 (454)
T KOG4332|consen  272 TPALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRSS  310 (454)
T ss_pred             cccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcCC
Confidence            33222111   1123467777777888888887777666543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.45  E-value=1.1e-05  Score=71.66  Aligned_cols=115  Identities=10%  Similarity=0.106  Sum_probs=95.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHH
Q 009469          240 NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN  319 (534)
Q Consensus       240 s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~  319 (534)
                      ++..--.-.++......+.+++.+.+.+++|.|+.+++|.+.+.+-.... +-+  +.+.++.+.++.|++.+..+++..
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhh
Confidence            33333345666777788888899999999999999999999988665544 334  678899999999999999999999


Q ss_pred             HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          320 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (534)
Q Consensus       320 ~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~  357 (534)
                      .++.+...++++++..+++......+.++|.++.-.+.
T Consensus       112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888887766553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.45  E-value=1.9e-05  Score=80.02  Aligned_cols=161  Identities=13%  Similarity=0.100  Sum_probs=125.9

Q ss_pred             hhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-hhCCchHHHHHHHHHHHHHHHHhhhc-cCCh
Q 009469          221 MDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-KFGGKPVLGFGVIWWSVATVLTPVAA-RIGL  297 (534)
Q Consensus       221 ~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D-r~Grr~~l~~g~~~~~i~~~l~~~~~-~~~~  297 (534)
                      +..++.-..+.++ .+.||++..+...+......|..++....|++.. |.+++++..+|+.+.+++..+..++. ..+.
T Consensus       222 ~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~  301 (403)
T PF03209_consen  222 LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSP  301 (403)
T ss_pred             HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3444445555555 6778999999999999999999999999999877 67788888888888877776655442 2256


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc----------cCchHHHH
Q 009469          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK----------FGWPSVFY  367 (534)
Q Consensus       298 ~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~----------~gw~~~f~  367 (534)
                      +.+...-++.|++.|.......+..-+...+++-|..+|.+.....++..++.+++|.+.|.          .+|..+|.
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~  381 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA  381 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            78888999999999999999999999999999999999999999999999999999887663          13445555


Q ss_pred             HHHHHHHHHHHHHH
Q 009469          368 SFGSLGSIWFALWL  381 (534)
Q Consensus       368 i~~~~~~i~~i~~~  381 (534)
                      +-+++.++.+++..
T Consensus       382 lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  382 LEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555544444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.44  E-value=8.4e-06  Score=81.89  Aligned_cols=161  Identities=14%  Similarity=0.198  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh
Q 009469          212 CFSAFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP  290 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~  290 (534)
                      ..+..|+........+..++.+..+ .|.+..+.....+.+..+..+|.+++.++..|+...+.+.+..++..+.++..+
T Consensus       241 gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~  320 (422)
T COG0738         241 GVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA  320 (422)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555666666666666555 888999999999999999999999999999999999999888888888777777


Q ss_pred             hhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHH
Q 009469          291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG  370 (534)
Q Consensus       291 ~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~  370 (534)
                      +..  +.. -+.+-++.|+..+..+|...+.-.+..|  +.....|..-....+|+++-|.+.|++.|..|-...+.+..
T Consensus       321 l~~--g~v-~~~~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~p  395 (422)
T COG0738         321 LIG--GVV-ALYALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVP  395 (422)
T ss_pred             Hhc--ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHH
Confidence            877  533 3445677899999999999999999997  33444444455667899999999999999999887776555


Q ss_pred             HHHHHHH
Q 009469          371 SLGSIWF  377 (534)
Q Consensus       371 ~~~~i~~  377 (534)
                      .++.+..
T Consensus       396 llc~lyV  402 (422)
T COG0738         396 LLCYLYV  402 (422)
T ss_pred             HHHHHHH
Confidence            4444444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.43  E-value=2.5e-05  Score=81.75  Aligned_cols=156  Identities=9%  Similarity=0.027  Sum_probs=99.8

Q ss_pred             hHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhh---ccCChHH
Q 009469          224 VNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA---ARIGLPF  299 (534)
Q Consensus       224 ~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~---~~~~~~~  299 (534)
                      ..+....|.+ .+.+|.++.+.++.......+..++..+.+.+.++.++++.+.....+..++.++....   ...+++.
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~  314 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLW  314 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            3444455654 55569999999999888888888888888887755544444333333333333222211   1113444


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL  379 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~  379 (534)
                      +++..++.++|.+...+......- .-....+|++.++.+.....+..+++.+++++... +-.+.|...+++..+....
T Consensus       315 ~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~  392 (413)
T PRK15403        315 SVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF  392 (413)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence            567777888888877777664321 11233579999999998888899999999988665 5566676666555544444


Q ss_pred             HH
Q 009469          380 WL  381 (534)
Q Consensus       380 ~~  381 (534)
                      .+
T Consensus       393 ~~  394 (413)
T PRK15403        393 TL  394 (413)
T ss_pred             HH
Confidence            33

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.41  E-value=1.4e-05  Score=85.47  Aligned_cols=139  Identities=13%  Similarity=0.060  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCchH-------HHHHHHHHHHHHHHHh-----hhc---cCChHHHHHHHHHHh
Q 009469          244 VGLIQSSFFWGYLLTQIVGGIWADKFGGKPV-------LGFGVIWWSVATVLTP-----VAA---RIGLPFLLIMRAFMG  308 (534)
Q Consensus       244 ~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~-------l~~g~~~~~i~~~l~~-----~~~---~~~~~~ll~~r~l~G  308 (534)
                      ..++.++..+...+..++.+++.||+++|+.       +.+|.++.+++.+..+     +..   ..+.+.++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3566667777787889999999999999974       7777777776664321     221   235666778889999


Q ss_pred             hcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc---------c-CchHHHHHHHHHHHHHHH
Q 009469          309 IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK---------F-GWPSVFYSFGSLGSIWFA  378 (534)
Q Consensus       309 ig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~---------~-gw~~~f~i~~~~~~i~~i  378 (534)
                      +|.+...++..+++.+..|++.++.++|++.....+|..+|..++......         . ...+.|...++..+++.+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888665310         1 135666666666665555


Q ss_pred             HHHH
Q 009469          379 LWLK  382 (534)
Q Consensus       379 ~~~~  382 (534)
                      +++.
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            5444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.38  E-value=3.5e-06  Score=88.76  Aligned_cols=177  Identities=9%  Similarity=0.068  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCc---------hHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK---------PVLGF  277 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr---------~~l~~  277 (534)
                      .+..+++..+........+....|.+ .+.+|.+..+.|++.++..+...+..+++|.++||.-+|         ..-.+
T Consensus       259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i  338 (466)
T KOG2532|consen  259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI  338 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence            34455556666666667777777765 667899999999999999999999999999999998652         22244


Q ss_pred             HHHHHHHHHHHHhhhccCCh-HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          278 GVIWWSVATVLTPVAARIGL-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~~~~~-~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l  356 (534)
                      +....+++.+..++....+. ..++..-+..++. |...+....-..+.. +++-+..+|+.+....+.+.++|.+.+.+
T Consensus       339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~-g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS-GFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc-ccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            55555555666666553122 2222222222222 222222223333334 77889999999999999999999999999


Q ss_pred             hcc---cCchHHHHHHHHHHHHHHHHHHHhhcC
Q 009469          357 IQK---FGWPSVFYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       357 ~~~---~gw~~~f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      ...   ..|+++|++.+++.++..+++.++...
T Consensus       417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~  449 (466)
T KOG2532|consen  417 VTDNTREEWRIVFLIAAGILIVGNIIFLFFGSG  449 (466)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHhchheeEeecC
Confidence            842   369999999999888887666665433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.30  E-value=5.2e-09  Score=110.71  Aligned_cols=165  Identities=13%  Similarity=0.077  Sum_probs=109.7

Q ss_pred             hHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh--h-h-ccC----
Q 009469          224 VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP--V-A-ARI----  295 (534)
Q Consensus       224 ~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~--~-~-~~~----  295 (534)
                      .......+.+.+..+.+..  -+......+...++.++...+.||+|||++++++.++.+++.+.++  . . .+.    
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344455666777777666  1222233344556667777999999999999999888887777664  1 1 111    


Q ss_pred             ChHHHHHHHHHHhhccc-chhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHH
Q 009469          296 GLPFLLIMRAFMGIGEG-VAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS  374 (534)
Q Consensus       296 ~~~~ll~~r~l~Gig~g-~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~  374 (534)
                      ++. .++.-.+..++.+ +..+....+.+|.+|.+.|+++.++......++..+++.+...+.+..+-...+++.+.+.+
T Consensus       348 ~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~  426 (451)
T PF00083_consen  348 SIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL  426 (451)
T ss_pred             ccc-cceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence            111 1222222222222 33455668889999999999999999999999999999988888877663456666676767


Q ss_pred             HHHHHHHHhhcCCCCCC
Q 009469          375 IWFALWLKKAYSSPKED  391 (534)
Q Consensus       375 i~~i~~~~~~~~~~~~~  391 (534)
                      +..++.+++.||+..+.
T Consensus       427 i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  427 IAIIFVYFFLPETKGKT  443 (451)
T ss_pred             HHHhheeEEEeeCCCCC
Confidence            77777777777765443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.27  E-value=6.6e-07  Score=90.75  Aligned_cols=178  Identities=10%  Similarity=-0.007  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHH----HHH-----HHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          207 VVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGL----IQS-----SFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~----i~s-----~~~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      ..++..+...|+.-...+..+..+..+.+..++.+.....    -.+     +...++..+.++...++|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4555566666666666666667777777877776554333    111     2223333455667778999999999999


Q ss_pred             HHHHHHHHHHHHhhhccC--ChHHHHHHHHHHh-hcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009469          278 GVIWWSVATVLTPVAARI--GLPFLLIMRAFMG-IGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (534)
Q Consensus       278 g~~~~~i~~~l~~~~~~~--~~~~ll~~r~l~G-ig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~  354 (534)
                      |.+++++..+..++..+.  +-..++++-.+.. ++.-+.......+.+|.||.+-|+..-|+..+..-.|+++|.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            999999999988877631  1111222222222 1222334455667799999999999999999999999999999999


Q ss_pred             Hhhc-----ccCchHHHHHHHHHHHHHHHHHHHhh
Q 009469          355 ILIQ-----KFGWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       355 ~l~~-----~~gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      ++.+     ..+.++++++++....+..++.+++.
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence            9998     67899999999988877766665554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.24  E-value=3.8e-05  Score=82.84  Aligned_cols=181  Identities=15%  Similarity=0.087  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      ++.+.+..+....+...+..+.+.+.+..|.+... .+...+..+...++..+...+.||+|||+.++.+.+.+.++.++
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~  375 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVI  375 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Confidence            33444444444455555566677777777776544 55555666666777778899999999999999999999999988


Q ss_pred             Hhhhcc-----------CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          289 TPVAAR-----------IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (534)
Q Consensus       289 ~~~~~~-----------~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~  357 (534)
                      ++....           ..+..+....+.......+..+....+.+|.+|.+-|+++.++......+...+-......+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~  455 (513)
T KOG0254|consen  376 LAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFIT  455 (513)
T ss_pred             HHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775421           011222222222222222334555578899999999999999987766665554444444444


Q ss_pred             cccCchHHHHHHHHHHHHHHH-HHHHhhcCCCCC
Q 009469          358 QKFGWPSVFYSFGSLGSIWFA-LWLKKAYSSPKE  390 (534)
Q Consensus       358 ~~~gw~~~f~i~~~~~~i~~i-~~~~~~~~~~~~  390 (534)
                      ...++...|...+..+.+... ..+...|+....
T Consensus       456 ~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  456 EALGIGGTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             HhccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            444455677777766666666 455556655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.22  E-value=9.9e-05  Score=78.01  Aligned_cols=181  Identities=13%  Similarity=-0.030  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHH-H-hhhCCCcc-----h-----hHHHHHHHHHHHHHHHHHHHHHHhhhCC-chH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPM-S-KEFNWNST-----T-----VGLIQSSFFWGYLLTQIVGGIWADKFGG-KPV  274 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~s~~-----~-----~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~  274 (534)
                      .+..++...++.++....+-.+...+ . +.|+-++.     +     -.|....+.+...+.+++.-++.+++|+ |++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            34445555666666555554444443 3 23443221     1     2244555566666777788889999995 677


Q ss_pred             HHHHHHHHHHHHHHHhhhccC--C-----------------hHHHHHHHHHHhhcccchhhHHHHHHhhhccC--Ccchh
Q 009469          275 LGFGVIWWSVATVLTPVAARI--G-----------------LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV--SERSR  333 (534)
Q Consensus       275 l~~g~~~~~i~~~l~~~~~~~--~-----------------~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~--~~rg~  333 (534)
                      ..++.++.+++.+...+....  |                 .+..++...+.|+..+..+..-++++++..++  ++.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            788888888887777654310  0                 25677778889999999999999999999985  45599


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHHHhhcCCC
Q 009469          334 SLAFVYSGMYLGSVTGLAVSPILIQKFG--WPSVFYSFGSLGSIWFALWLKKAYSSP  388 (534)
Q Consensus       334 ~~gi~~~~~~lG~~igp~i~~~l~~~~g--w~~~f~i~~~~~~i~~i~~~~~~~~~~  388 (534)
                      .+|+++.+..+..++..+..|.+.+.+|  -.+++.+.++..++..++.++..|+.+
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999988888666554  566778788888888888777777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.21  E-value=0.0031  Score=66.86  Aligned_cols=284  Identities=10%  Similarity=0.031  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhCCchHHHHHHHHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVLGFGVIWWSV  284 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i  284 (534)
                      +..++.+.+..|+..+.++..-..-..+.-. ...+..+.++=....+ ...+...+..++++++++.+++-+..+.+..
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~  101 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLG  101 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4555555555555544444332221111000 1245556666554444 4455677789999999999987766655555


Q ss_pred             HHHHHhhh--cc-----CC----------------------hHHHHHHHHHHhhcccchhh-HHHHHHhhhccCCcchhH
Q 009469          285 ATVLTPVA--AR-----IG----------------------LPFLLIMRAFMGIGEGVAMP-AMNNMLSKWIPVSERSRS  334 (534)
Q Consensus       285 ~~~l~~~~--~~-----~~----------------------~~~ll~~r~l~Gig~g~~~~-~~~~~i~~~~~~~~rg~~  334 (534)
                      ...++++.  +.     .+                      .|.+.+.-++.-+-.....+ .-..+..|.++.+|-.+.
T Consensus       102 fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRf  181 (491)
T PF03219_consen  102 FFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRF  181 (491)
T ss_pred             HHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            55444432  10     00                      11222222222222233333 457888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc---------ccCchHHHHHHH-HH---HHHHHHHHHHhhcCCCCCChhhhHHHHhh
Q 009469          335 LAFVYSGMYLGSVTGLAVSPILIQ---------KFGWPSVFYSFG-SL---GSIWFALWLKKAYSSPKEDPELRAEEKRH  401 (534)
Q Consensus       335 ~gi~~~~~~lG~~igp~i~~~l~~---------~~gw~~~f~i~~-~~---~~i~~i~~~~~~~~~~~~~~~~~~~~~~~  401 (534)
                      .+++..+.++|.++++.+..++.+         .-.|...+.... ++   +++...+.... .+...+++.......  
T Consensus       182 Ypl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~-~~~vl~~~~~~~~~~--  258 (491)
T PF03219_consen  182 YPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYM-NKNVLTDPRFYPSAK--  258 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCccccchhhh--
Confidence            999999999999999998888877         123543332221 11   11111111122 211111111100000  


Q ss_pred             hhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhh---HHHHHHHHHHHHHHHH
Q 009469          402 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTES---GLFCVLPWLTMAVFAN  478 (534)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~---g~l~~~~~~~~iig~~  478 (534)
                       .......+..-...++.+++.|.+..+++...++......+....-..+++.+.-+...+   |-.....++..++..+
T Consensus       259 -~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~  337 (491)
T PF03219_consen  259 -KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMF  337 (491)
T ss_pred             -cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence             000011111122456778889988888888888888777777766666666543222222   3344555666666667


Q ss_pred             HHHHHHHHhhcccchH
Q 009469          479 MGGWIADTLVSKGLSI  494 (534)
Q Consensus       479 i~g~l~dr~g~r~~~i  494 (534)
                      +++.+.+|+|.+...+
T Consensus       338 l~~~iir~~GW~~~Al  353 (491)
T PF03219_consen  338 LSSNIIRRFGWRTAAL  353 (491)
T ss_pred             HHHHHHHHhhHHHHHH
Confidence            7888888888776433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.19  E-value=0.00016  Score=71.96  Aligned_cols=263  Identities=12%  Similarity=0.022  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-----hhCCchHHHH-HH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-----KFGGKPVLGF-GV  279 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D-----r~Grr~~l~~-g~  279 (534)
                      ...+.++.+.+.+.+.-..... .+|.+.+.-|.|-+..+....++ .. ...-++|.++.|     |+||||..++ +.
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            4455666667777777777777 88988887788877766433222 12 124568888999     9999986432 22


Q ss_pred             HHHHHHHHHHhhhc---------cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHH
Q 009469          280 IWWSVATVLTPVAA---------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGL  350 (534)
Q Consensus       280 ~~~~i~~~l~~~~~---------~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp  350 (534)
                      .+....+.+.+...         .++...+....++.-+..+....+.-.+.-.+..+++.|-+......+...|..++.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            22222222222221         112223333445556666666777777777888888888887776666666666665


Q ss_pred             HHHHHhhc-------ccCch---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCcccccccc
Q 009469          351 AVSPILIQ-------KFGWP---------SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV  414 (534)
Q Consensus       351 ~i~~~l~~-------~~gw~---------~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (534)
                      .+.-.+..       ...|+         .-+++.+.+..+.-.+..+..++.+....+   +....        -....
T Consensus       187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~---e~~~~--------i~~~y  255 (510)
T KOG3574|consen  187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE---ELELG--------IHESY  255 (510)
T ss_pred             ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh---hhhcC--------HHHHH
Confidence            54333322       01222         234445555555554444444433332111   00000        00011


Q ss_pred             ccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          415 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL  487 (534)
Q Consensus       415 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~  487 (534)
                      .-++++++-|.+..++......-.++.+-....+.-+.+ .|++...-+++.    +..+...++.+++.-|+
T Consensus       256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~----v~~~plqI~l~~~~gk~  323 (510)
T KOG3574|consen  256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIA----VPLVPLQIALPLYIGKW  323 (510)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeee----eehhhHHHhhhhhheee
Confidence            234566777778777777777788888878888888888 599998877665    33444444445544444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.15  E-value=0.00054  Score=70.18  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhh
Q 009469          245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK  324 (534)
Q Consensus       245 g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~  324 (534)
                      +.+.-+-.+...+..+++.++.+|+..+.=+.+..++.+++.++.++++  +.+.-+++-++.+++.|..-....++. .
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt-~  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLT-H  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHH-H
Confidence            4466666677778888888899999877767777888899999999988  777788888999999888877777764 4


Q ss_pred             hccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHHHHHhhcC
Q 009469          325 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGSLGSIWFALWLKKAYS  386 (534)
Q Consensus       325 ~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw--~~~f~i~~~~~~i~~i~~~~~~~~  386 (534)
                      .+++    ..++-+.++.+.++++|+..-..+.+ .|+  |.++.+...+.++..+..++..+.
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            5643    35788889999999999988877766 655  667777776666555555544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.11  E-value=1.7e-05  Score=62.24  Aligned_cols=75  Identities=13%  Similarity=0.222  Sum_probs=70.1

Q ss_pred             HHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc
Q 009469          219 CNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      .+..+..+++.+|.+.++.++|..+.||+.+..++|+.+|.+...++.++..+++.+..+.+...+..+.+++..
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356778899999999999999999999999999999999999999999998889999999999999999999887

Note that many members are hypothetical proteins.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.05  E-value=0.024  Score=58.93  Aligned_cols=286  Identities=8%  Similarity=-0.014  Sum_probs=158.6

Q ss_pred             ccCCchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhC---CCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhCCchHH
Q 009469          200 EQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFN---WNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGGKPVL  275 (534)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~i~s~~~l-~~~~~~~~~G~l~Dr~Grr~~l  275 (534)
                      +..+.-|..++...+..++..+.++..-    .+.+.+.   .++..+.++-+...+ +..+..++.+++.+++.+.+++
T Consensus        20 pi~r~E~~kflpl~Ll~f~I~~ny~~lR----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF   95 (509)
T COG3202          20 PIRRYELKKFLPLALLFFCILFNYNLLR----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVF   95 (509)
T ss_pred             eccHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHH
Confidence            3344446666666665565555544333    3444443   456677888888877 6678888999999999999998


Q ss_pred             HHHHHHHHHHHHHHhhhcc-------CC-----------------------hHHHHHHHHHHhhcccchhh-HHHHHHhh
Q 009469          276 GFGVIWWSVATVLTPVAAR-------IG-----------------------LPFLLIMRAFMGIGEGVAMP-AMNNMLSK  324 (534)
Q Consensus       276 ~~g~~~~~i~~~l~~~~~~-------~~-----------------------~~~ll~~r~l~Gig~g~~~~-~~~~~i~~  324 (534)
                      -+-...+....+++++.-.       .+                       .|..-+.-++.-+-.+.... .-.....|
T Consensus        96 ~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe  175 (509)
T COG3202          96 YIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE  175 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666666666554311       01                       12222222222222233333 44567788


Q ss_pred             hccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC----------chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhh
Q 009469          325 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG----------WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL  394 (534)
Q Consensus       325 ~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g----------w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~  394 (534)
                      .+..+|-.+.+++++.+.+++..++..+..++..+..          .+..+.+.++.+.+++.+..+.-+...+.+...
T Consensus       176 itt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~  255 (509)
T COG3202         176 ITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFY  255 (509)
T ss_pred             hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence            8888888999999999999999999988888876321          122233333333333333333222222211111


Q ss_pred             hHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHH---HHHHHHH
Q 009469          395 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL---FCVLPWL  471 (534)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~---l~~~~~~  471 (534)
                       .+....  ......+..-...++.+.+.|.++.+++...++..+...+....-.-.++.+....+...+   +....++
T Consensus       256 -~~~~~k--k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgv  332 (509)
T COG3202         256 -LRAKKK--KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGV  332 (509)
T ss_pred             -HHHhcc--cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHH
Confidence             000000  0000011111234667788888888888888887777666654444444433333333333   3333444


Q ss_pred             H-HHHHHHHHHHHHHHhhcccc
Q 009469          472 T-MAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       472 ~-~iig~~i~g~l~dr~g~r~~  492 (534)
                      . .++...+++-+.+|.|....
T Consensus       333 v~~v~~~~~~s~~ir~~GW~~~  354 (509)
T COG3202         333 VSLVVFLFPGSNLIRRVGWFTG  354 (509)
T ss_pred             HHHHHHHhhhHHHHHHhhHHHH
Confidence            4 34455567788888876643

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.05  E-value=3.7e-05  Score=59.69  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             HHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          214 SAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      ..++........+.|+++.+.++.|+++.++|.+.++..+...++++++|.++||+++++.++.+..++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            344555566667778888888899999999999999999999999999999999999998877665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.93  E-value=0.00018  Score=77.49  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHHH-hhhCCCc---chhHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHH
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPMS-KEFNWNS---TTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVIWW  282 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~---~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~g~~~~  282 (534)
                      .+....+..++.++..+....+.|... .-|+.+.   ...++....+.++..++.++.|.+..++++ |+.++++.+++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            344444555555555556666666643 3455444   357888888999999999999999998876 55566777777


Q ss_pred             HHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          283 SVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       283 ~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      .++.-+++.....|....+..-++.|++.|....+......-..|+++.|.+.|+......+|+.+|..+...+..
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7665555554433455567788899999999888888888888999999999999999999999999887766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.89  E-value=0.00077  Score=71.62  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhh-CCC----cchhHHHHHHHHHHHHHHHHHHHHHHhhhCC--ch----
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEF-NWN----STTVGLIQSSFFWGYLLTQIVGGIWADKFGG--KP----  273 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s----~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr--r~----  273 (534)
                      |...++.+++...+.+..+......+..+.++. +.+    .-..+|..++..+..++.+|+.+++-.|..+  |.    
T Consensus       266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~  345 (493)
T PRK15462        266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW  345 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence            344444444444444444444444444444432 111    1236788899999888888888888777733  21    


Q ss_pred             -HHHHHHHHHHHHHHHHhhhc-------cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHH-HHH
Q 009469          274 -VLGFGVIWWSVATVLTPVAA-------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSG-MYL  344 (534)
Q Consensus       274 -~l~~g~~~~~i~~~l~~~~~-------~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~-~~l  344 (534)
                       =+.+|+++.+++.+++.++.       ..+.+.+++.-++.++|.-+..|...+.+++..|++-||+.||.+... ..+
T Consensus       346 ~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~  425 (493)
T PRK15462        346 GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI  425 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence             16778888888876664321       125566888889999999999999999999999999999999999763 367


Q ss_pred             HHHHHHHHHHHhhcc------------cCchHHHHHHHHHHHHH
Q 009469          345 GSVTGLAVSPILIQK------------FGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       345 G~~igp~i~~~l~~~------------~gw~~~f~i~~~~~~i~  376 (534)
                      |..++..+++.....            ..+...|...+...+++
T Consensus       426 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        426 ANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            777777666655311            12344566666655544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.89  E-value=0.00017  Score=71.92  Aligned_cols=140  Identities=19%  Similarity=0.189  Sum_probs=115.1

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC--CchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcc
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG--GKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE  311 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G--rr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~  311 (534)
                      ...||.++.+.|-+.+...++..+.+....+..||..  -+-.+..++.+..-..++.+.+.  ....+.++-.+..+..
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--TPVVLYLGSTLKSFST  366 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--cchhhhHHHHHHHHHH
Confidence            4678999999999999999999999999999999987  77778888888887788888777  5566788888888888


Q ss_pred             cchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHH
Q 009469          312 GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSI  375 (534)
Q Consensus       312 g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~-gw~~~f~i~~~~~~i  375 (534)
                      +...+....++....|.++||.++|+......++-++||+++|.+.... +-+.++...+.+.++
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~  431 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLI  431 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHH
Confidence            8888999999999999999999999999999999999999998876532 223344433433333

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.87  E-value=0.00015  Score=56.22  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          427 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       427 ~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +.+-...++.+.+...+..|+|.|+++ .|+++.+.|.+.++..+..+++.+++|+++||+++++..
T Consensus         3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen    3 LPLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            344556677777888899999999998 699999999999999999999999999999999999743

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.83  E-value=0.00024  Score=69.89  Aligned_cols=280  Identities=12%  Similarity=0.059  Sum_probs=159.9

Q ss_pred             hhCCCcchhH-HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccch
Q 009469          236 EFNWNSTTVG-LIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVA  314 (534)
Q Consensus       236 ~~g~s~~~~g-~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~  314 (534)
                      +.+++..++. =+.-+..-.+.+.-++.=.+.|-...|+++++-.+...+..++.-+.+  +.+.+=+.-++.|...+. 
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tAa-  111 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATAA-  111 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHHH-
Confidence            3355555443 122222333444445555689999999998877666666666666666  666676777788877553 


Q ss_pred             hhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHHHHHhhcCCCCCCh
Q 009469          315 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGSLGSIWFALWLKKAYSSPKEDP  392 (534)
Q Consensus       315 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw--~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~  392 (534)
                      -.+.++++-...+++++-++.|...++.-.|-.+|..++..++..-.+  ...-++......+..++.++ .|..++..-
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f-LP~v~rSl~  190 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALF-LPRVKRSLY  190 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhh-CCCCchhhh
Confidence            467788888888999999999999999999999999988888764333  32223322222333333333 333222111


Q ss_pred             hhhHHHHhhhhCCCcccccc------------ccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-h
Q 009469          393 ELRAEEKRHILGGSISKEAV------------SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN-L  459 (534)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s-~  459 (534)
                      ....+++....+.++.....            -...+....++|+++.-.+...+...+++.+.+|....-.+...-+ .
T Consensus       191 f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~  270 (433)
T KOG3810|consen  191 FHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPAN  270 (433)
T ss_pred             hhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchh
Confidence            11111110000000000000            0123445567888888888888888888888888777766642111 1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Q 009469          460 TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV  526 (534)
Q Consensus       460 ~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  526 (534)
                      .-.|..=++..+.++++.++.|.+--.+.|.+-       .+++++.+..+..++........++..
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~-------~ll~~~s~~~agllf~m~~t~~Iw~~Y  330 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD-------LLLAVGSAVQAGLLFIMAQTQHIWVCY  330 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchhhH-------HHHHHHHHHhhhhhhhhhcccceehhh
Confidence            123445556667777777778877544444422       244444444454555555555554433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00015  Score=76.93  Aligned_cols=162  Identities=13%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh----hCCchHHHHHHHHHHH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK----FGGKPVLGFGVIWWSV  284 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr----~Grr~~l~~g~~~~~i  284 (534)
                      ...++..++.....+.+...+|.+.++ .|++..+.+.+...+.++.+++.+++|+++||    ..+|..+.....++.+
T Consensus       276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  276 WPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            334455566667777778888887777 56999999999999999999999999999999    6677766666555554


Q ss_pred             HH-HHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcch-hHHHHHHHHHHHHHHH-HHHHHHHhhcccC
Q 009469          285 AT-VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERS-RSLAFVYSGMYLGSVT-GLAVSPILIQKFG  361 (534)
Q Consensus       285 ~~-~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg-~~~gi~~~~~~lG~~i-gp~i~~~l~~~~g  361 (534)
                      .. +......  +.......-+..+.+.....+.+...+++......|. ...+....+.+.++++ +++..+.....++
T Consensus       356 ~g~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~  433 (495)
T KOG2533|consen  356 IGAISLLAAA--VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG  433 (495)
T ss_pred             HHHHHHHhhc--cchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence            44 3333332  2322333333333445555666677777776554443 3333344444444444 4444444455678


Q ss_pred             chHHHHHHHHHH
Q 009469          362 WPSVFYSFGSLG  373 (534)
Q Consensus       362 w~~~f~i~~~~~  373 (534)
                      |.+.|+.....+
T Consensus       434 ~~~~f~~~~~~~  445 (495)
T KOG2533|consen  434 WGAVFYMLVAAC  445 (495)
T ss_pred             hhhHHHHHHHHH
Confidence            888885444333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.73  E-value=0.0058  Score=59.92  Aligned_cols=72  Identities=10%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhc
Q 009469          252 FWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI  326 (534)
Q Consensus       252 ~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~  326 (534)
                      .+..+..+++.+.+..++|-|++++++...+......--. +  .+..++-.....|+|.+..+..-.+++++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~-p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE-P--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-h--hHHhhccHHHhhccccccccccCcceecHHH
Confidence            3444556666678999999999999888877654332211 2  4677888999999999988887777766654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.73  E-value=0.0024  Score=68.97  Aligned_cols=154  Identities=16%  Similarity=0.012  Sum_probs=105.1

Q ss_pred             HHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCCh-HHHHHHHHHHhh
Q 009469          231 LPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL-PFLLIMRAFMGI  309 (534)
Q Consensus       231 ~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~-~~ll~~r~l~Gi  309 (534)
                      ......+|.+..   +................+.+.|++|||..+..+.++..++.++.++...... +..++...+..+
T Consensus       342 ~~~~~~lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
T KOG0255|consen  342 SLNVSGLGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF  418 (521)
T ss_pred             hhhhhhcCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            333444454433   3333333355555566689999999999999999999999999988764322 135555555556


Q ss_pred             cccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 009469          310 GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSP  388 (534)
Q Consensus       310 g~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~  388 (534)
                      +.+..+.....+.+|++|+..|..+.+.......+|.+++|.+...... ......+.+.+.+..+...+...+.|++.
T Consensus       419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            6666677779999999999999999999999999999999998766544 22222222245555555555545555543

>PTZ00207 hypothetical protein; Provisional

Probab=97.70  E-value=0.00058  Score=73.94  Aligned_cols=171  Identities=6%  Similarity=-0.052  Sum_probs=115.9

Q ss_pred             HHHHHHHHHhhhhHHHHhHHHHHhhh-CCCc-chhH-HHHHHHHHHHHHHHHHHHHHHhhh---C-----CchHHHHHHH
Q 009469          212 CFSAFLLCNMDRVNMSIAILPMSKEF-NWNS-TTVG-LIQSSFFWGYLLTQIVGGIWADKF---G-----GKPVLGFGVI  280 (534)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~-~~~g-~i~s~~~l~~~~~~~~~G~l~Dr~---G-----rr~~l~~g~~  280 (534)
                      ++..+++.......+..-+.++.+.+ |.+. .+.. ++.+++.++..+|-+..|.+....   .     +|++.+....
T Consensus       358 l~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~  437 (591)
T PTZ00207        358 LLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPS  437 (591)
T ss_pred             HHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence            33334444333333333455666777 6522 3222 277888888888888888877221   1     1223333333


Q ss_pred             HHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH-HHHHHHhhcc
Q 009469          281 WWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTG-LAVSPILIQK  359 (534)
Q Consensus       281 ~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~ig-p~i~~~l~~~  359 (534)
                      ++.++.+++++..  ....+++.-++.|++.|..++.....++|+|. |+-|+-..+......+|..+. -.+.|.+.|+
T Consensus       438 ~~~~~~lll~~~~--p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~  514 (591)
T PTZ00207        438 VCIITMLTLFLTL--PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQ  514 (591)
T ss_pred             HHHHHHHHHHHHC--CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3666666666664  33578999999999999999999999999997 888988888888888888776 5677777753


Q ss_pred             c----------C---chHHHHHHHHHHHHHHHHHHHhhc
Q 009469          360 F----------G---WPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       360 ~----------g---w~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      -          |   ++.+|++++.++++..++...+..
T Consensus       515 ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~  553 (591)
T PTZ00207        515 QADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHL  553 (591)
T ss_pred             HHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheee
Confidence            1          2   678898888888877776655443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.63  E-value=0.00026  Score=73.04  Aligned_cols=111  Identities=20%  Similarity=0.290  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhccC-------ChHHHHHHHHHHhhcccchhhHHHHHHhhhccCC---cchhHHHHHHHHH
Q 009469          273 PVLGFGVIWWSVATVLTPVAARI-------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS---ERSRSLAFVYSGM  342 (534)
Q Consensus       273 ~~l~~g~~~~~i~~~l~~~~~~~-------~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~---~rg~~~gi~~~~~  342 (534)
                      +++++|.+++++|.+++.++...       ..+.++++.++.++|.|+.-+...++++|.++++   +|...+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788899999999885544211       2357888889999999999999999999999865   4667888899999


Q ss_pred             HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          343 YLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       343 ~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      ++|..+++.+.+++-++.||.+.|.+.++..++..+.++..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888887777666544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.61  E-value=0.00057  Score=71.95  Aligned_cols=125  Identities=15%  Similarity=0.228  Sum_probs=109.1

Q ss_pred             HHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHH-HHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhh
Q 009469          231 LPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGG-IWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGI  309 (534)
Q Consensus       231 ~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G-~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gi  309 (534)
                      -++...++++..+.+...+...+...+++++.. .+...+|-|+++..|++.-.+..++.++++  +.|+++...++.++
T Consensus       266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--ETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHh
Confidence            345677899999999998888888888888877 677889999999999999999999999999  67777777777766


Q ss_pred             cccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          310 GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       310 g~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      . ....++..+.++.+..++++|+++++......+.++++|.+-+.+..
T Consensus       344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            5 56679999999999999999999999999999999999999888754

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.47  E-value=0.0033  Score=68.04  Aligned_cols=179  Identities=15%  Similarity=0.149  Sum_probs=132.7

Q ss_pred             chHHHHHHHHHHHHHHHhhh-hHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDR-VNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIW  281 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~~  281 (534)
                      ..|+..........+..+.. ......+.++..+++.+...+.-....+.-...+.++++++++|-| ||-+++.++.++
T Consensus        34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i  113 (571)
T KOG1237|consen   34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLI  113 (571)
T ss_pred             chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34655554444444444433 2345677788889998888888888888888899999999999985 788999999998


Q ss_pred             HHHHHHHHhhhcc--------------------CC---hHHHHHHHHHHhhcccchhhHHHHHHhhhcc---CC---cch
Q 009469          282 WSVATVLTPVAAR--------------------IG---LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP---VS---ERS  332 (534)
Q Consensus       282 ~~i~~~l~~~~~~--------------------~~---~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~---~~---~rg  332 (534)
                      ..++.++..+...                    .+   ...+.....+..+|.|+.-+...+.-+|-++   ++   .+.
T Consensus       114 ~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  114 SLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            8888655443210                    00   1245666667788999999999999999998   22   223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Q 009469          333 RSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK  382 (534)
Q Consensus       333 ~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~  382 (534)
                      ..+.++....++|..++..+..+.-+..+|.+.|.+..+..++.+++++.
T Consensus       194 ~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  194 SFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            67788888899999999988888878899999998888777776666553

>PRK03612 spermidine synthase; Provisional

Probab=97.44  E-value=0.0096  Score=64.01  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH---HHHHHHhhhcc--CCh-HHHHHHHHHH
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS---VATVLTPVAAR--IGL-PFLLIMRAFM  307 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~---i~~~l~~~~~~--~~~-~~ll~~r~l~  307 (534)
                      .-.+|.+....+.+.+++.+|..+|+.+++++.++.-++... +-..+..   ++..+......  ... ..++...++.
T Consensus        42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445688888999999999999999999999886433222221 1111111   11111111110  011 1223334455


Q ss_pred             hhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCchHHHHHHHHHHHHHHHH
Q 009469          308 GIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFYSFGSLGSIWFAL  379 (534)
Q Consensus       308 Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~-~~gw~~~f~i~~~~~~i~~i~  379 (534)
                      ++..|+..|....+..+.. .++-+...|-.+....+|+++|.++.+++.- .+|-..+.++.+.+.+++.++
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~  192 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV  192 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            6666666666666554432 2345678888999999999999999887654 677655555555555444433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.43  E-value=0.0012  Score=68.76  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=61.7

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHH-HHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFG-VIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g-~~~~~i~~~l~~~~~  293 (534)
                      ..+..+.....+.+.++.+.+++|+++.++|.+.++--+..+++.|++|+++||+-+|+.++++ .+....+.+++.+.+
T Consensus        19 f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~   98 (618)
T KOG3762|consen   19 FYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVP   98 (618)
T ss_pred             eeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeecc
Confidence            3444445556677888889999999999999999999999999999999999999876665554 555555556655553

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.26  E-value=0.011  Score=61.51  Aligned_cols=142  Identities=19%  Similarity=0.183  Sum_probs=104.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhhCCc---h----HHHHHHHHHHHHHHHHhhh--------ccCChHHHHHHHHH
Q 009469          242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGK---P----VLGFGVIWWSVATVLTPVA--------ARIGLPFLLIMRAF  306 (534)
Q Consensus       242 ~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr---~----~l~~g~~~~~i~~~l~~~~--------~~~~~~~ll~~r~l  306 (534)
                      -...|..+...+..++.+|+..++.-+.+++   +    -+-+|+++.+.+.++....        ...+.+.++..-++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457888999998899999888888885544   1    2455666666666554433        12357788899999


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH------hhcccCchHHHHHHHHHHHHHHHHH
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI------LIQKFGWPSVFYSFGSLGSIWFALW  380 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~------l~~~~gw~~~f~i~~~~~~i~~i~~  380 (534)
                      +++|.=+..|...+++....|+.-.+..++.+......|..++..+++.      ..+...-...|+..+...++..++.
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888999999888888888888777763      2233445567777777766666555


Q ss_pred             HHh
Q 009469          381 LKK  383 (534)
Q Consensus       381 ~~~  383 (534)
                      +..
T Consensus       484 ~~~  486 (498)
T COG3104         484 LLL  486 (498)
T ss_pred             HHh
Confidence            443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.94  E-value=0.01  Score=60.93  Aligned_cols=112  Identities=13%  Similarity=0.066  Sum_probs=76.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH-----HHHhhhccCChHHHHHHHHHHhhcccch
Q 009469          240 NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT-----VLTPVAARIGLPFLLIMRAFMGIGEGVA  314 (534)
Q Consensus       240 s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~-----~l~~~~~~~~~~~ll~~r~l~Gig~g~~  314 (534)
                      ...+.-+....|.+|-.++.--...    +.-|++.+...+-.+-..     ...-+.+  +.|.+++.-+..|+..|+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~fip--si~ivf~lif~eGLlGGa~  352 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRFIP--SIWIVFVLIFYEGLLGGAS  352 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhhhHH
Confidence            3456667777777776655332211    222444333332222211     2222334  5777778888999999999


Q ss_pred             hhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          315 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI  357 (534)
Q Consensus       315 ~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~  357 (534)
                      +......+.+-.++++|..++|....+-++|.+++.+++-.+-
T Consensus       353 YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  353 YVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888876653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.086  Score=53.94  Aligned_cols=138  Identities=12%  Similarity=0.021  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH---H
Q 009469          208 VVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS---V  284 (534)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~---i  284 (534)
                      ..+..++..+.....++.+..+.+++.+.+-.+.. .......+.+...+..++...+--+...|....++..++.   +
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il   97 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAIL   97 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455556777777788887777643332 2223333333333333333333333322222111211111   1


Q ss_pred             HHHHHhhh-------ccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 009469          285 ATVLTPVA-------ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLA  351 (534)
Q Consensus       285 ~~~l~~~~-------~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~  351 (534)
                      ..+.+.++       ....+...++.-.+.+++.|..........++. |++.    +.-+.++.++++++..+
T Consensus        98 ~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~y----tqavm~G~a~aG~l~Sl  166 (406)
T KOG1479|consen   98 FIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEY----TQAVMSGQALAGTLTSL  166 (406)
T ss_pred             HHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHH----HHHHHhcchhHhHHHHH
Confidence            11122221       112345566677778888888877777776665 3433    22333444455444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.66  E-value=0.0059  Score=62.63  Aligned_cols=165  Identities=12%  Similarity=-0.049  Sum_probs=102.9

Q ss_pred             hhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHH-Hhhhcc-CCh
Q 009469          221 MDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGG-KPVLGFGVIWWSVATVL-TPVAAR-IGL  297 (534)
Q Consensus       221 ~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Gr-r~~l~~g~~~~~i~~~l-~~~~~~-~~~  297 (534)
                      ...+.....+......-|++....|++.....++..+++.+.|.+.||... |.++.+......++... ..+... ...
T Consensus       280 g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~  359 (480)
T KOG2563|consen  280 GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDS  359 (480)
T ss_pred             HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCce
Confidence            333444444444445557777889999999999999999999999999864 55555555555555322 222221 112


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC---chH-HHHHHHHHH
Q 009469          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG---WPS-VFYSFGSLG  373 (534)
Q Consensus       298 ~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g---w~~-~f~i~~~~~  373 (534)
                      +.+...-.+.|++.....|...-+-.|..-|..-+...|+......+-+++-..+.+.+.+..+   |.+ .-+......
T Consensus       360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  439 (480)
T KOG2563|consen  360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSA  439 (480)
T ss_pred             EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHH
Confidence            3344555666777777788887777777656555677788777666666777777777776655   333 233333333


Q ss_pred             HHHHHHHHHhhc
Q 009469          374 SIWFALWLKKAY  385 (534)
Q Consensus       374 ~i~~i~~~~~~~  385 (534)
                      .+..++..++++
T Consensus       440 ~l~~~lva~~r~  451 (480)
T KOG2563|consen  440 LLGAILVAFFRP  451 (480)
T ss_pred             HHHHHHHhhhhh
Confidence            333444444433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.55  E-value=0.17  Score=53.28  Aligned_cols=51  Identities=14%  Similarity=0.099  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV  352 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i  352 (534)
                      ++..++.-++.|++.+.......++.+ .+|++    .++.+..+.+++++++.++
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            455667777888888888877777766 45443    4556666677777666554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.46  E-value=0.07  Score=55.72  Aligned_cols=270  Identities=11%  Similarity=0.024  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHhhhhHHHHhHHHHHhh--hCCCcchhHHHHHHHHHHHHHHHHHHHHHHh-----hhCCchHHHH------
Q 009469          211 LCFSAFLLCNMDRVNMSIAILPMSKE--FNWNSTTVGLIQSSFFWGYLLTQIVGGIWAD-----KFGGKPVLGF------  277 (534)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~D-----r~Grr~~l~~------  277 (534)
                      ++.+.+++.+.-.......+|.+.++  -+.|-++.+...-+ ...+. .-++|.++.|     |+||||..++      
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            34455666665555544567777666  56777666542111 11111 2344555555     7899987443      


Q ss_pred             HHHHHHHHHHH----------Hhhhcc-------CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHH
Q 009469          278 GVIWWSVATVL----------TPVAAR-------IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS  340 (534)
Q Consensus       278 g~~~~~i~~~l----------~~~~~~-------~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~  340 (534)
                      |..+..++.-+          -....+       .+...+....++.=+-.+..-.+.-.+.-.+..+++++.|..-...
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            33333333222          000000       0111122222233333344444455555566667888877777666


Q ss_pred             HHHHHHHHHHHHHHHhhcc-------------cC---chHHHHHHHHHHHHHHHHHHHhhcCCCCCCh--hhhH----HH
Q 009469          341 GMYLGSVTGLAVSPILIQK-------------FG---WPSVFYSFGSLGSIWFALWLKKAYSSPKEDP--ELRA----EE  398 (534)
Q Consensus       341 ~~~lG~~igp~i~~~l~~~-------------~g---w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~--~~~~----~~  398 (534)
                      +.+.|..++..+.-.+-+.             .|   -..-..+.+.+.++..+...++.+|.+..+.  +.+.    +.
T Consensus       162 G~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~  241 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDG  241 (544)
T ss_pred             HhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCccccccccccc
Confidence            7777776666554444321             11   1112234455555555555555555432211  0000    00


Q ss_pred             HhhhhCC-Ccccc---ccc----c---ccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Q 009469          399 KRHILGG-SISKE---AVS----V---IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCV  467 (534)
Q Consensus       399 ~~~~~~~-~~~~~---~~~----~---~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~  467 (534)
                      ..+.... ..+.+   ...    .   .....+++-|.+..+++.....-.++...-.....=+.+ .|++.+..+++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~l  320 (544)
T PF13000_consen  242 KSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVL  320 (544)
T ss_pred             cccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHH
Confidence            0000000 00000   000    1   123345677888888888888777777666666666777 6999988776654


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 009469          468 LPWLTMAVFANMGGWIADTL  487 (534)
Q Consensus       468 ~~~~~~iig~~i~g~l~dr~  487 (534)
                      +    .+...++.|+++-|+
T Consensus       321 i----~~P~qii~~~~~~Kw  336 (544)
T PF13000_consen  321 I----DFPFQIILPYYIGKW  336 (544)
T ss_pred             H----hhhHHHHHHHHhhhh
Confidence            3    344444555555554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.17  Score=53.01  Aligned_cols=140  Identities=15%  Similarity=0.220  Sum_probs=93.6

Q ss_pred             HHHHHhhhhHHHHhHHHH---HhhhCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHh---hhCCchHHHHHHHHHHHHHHH
Q 009469          216 FLLCNMDRVNMSIAILPM---SKEFNWNST-TVGLIQSSFFWGYLLTQIVGGIWAD---KFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~---~~~~g~s~~-~~g~i~s~~~l~~~~~~~~~G~l~D---r~Grr~~l~~g~~~~~i~~~l  288 (534)
                      .+..+.....+....|.-   ....+.+.. ..++......++..+++.+.+.+.+   ++|+++++.++.++..++.++
T Consensus       249 f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l  328 (461)
T KOG3098|consen  249 FFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL  328 (461)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence            344444444444444442   222232222 2233333444555556666677765   478999999999988888877


Q ss_pred             Hhhhcc----------------CChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Q 009469          289 TPVAAR----------------IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV  352 (534)
Q Consensus       289 ~~~~~~----------------~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i  352 (534)
                      .-+...                .++...++..+++|++-+......+.++++.+ +++|..+.+++-.-..++..++-..
T Consensus       329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            654421                12456778889999999999999999999999 8889999999888888877766655


Q ss_pred             HHHh
Q 009469          353 SPIL  356 (534)
Q Consensus       353 ~~~l  356 (534)
                      ....
T Consensus       408 ~~~~  411 (461)
T KOG3098|consen  408 SPYL  411 (461)
T ss_pred             hhhh
Confidence            5443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.43  E-value=0.013  Score=61.43  Aligned_cols=181  Identities=15%  Similarity=0.159  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHhHH-HHHhhhCCCcchhHHHHHHH----HHHHHHHHHHHHHHH-hhhCCchHHHHH
Q 009469          205 RWVVVLLCFSAFLLCNMDRVNMSIAIL-PMSKEFNWNSTTVGLIQSSF----FWGYLLTQIVGGIWA-DKFGGKPVLGFG  278 (534)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~i~s~~----~l~~~~~~~~~G~l~-Dr~Grr~~l~~g  278 (534)
                      .|...+.++...+.............+ .....++++..+.-+..++.    .+......+..+... -++..|..+..+
T Consensus       260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g  339 (488)
T KOG2325|consen  260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLG  339 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeh
Confidence            477777777777777666666444433 34566777776654443333    222222222223222 233446666666


Q ss_pred             HHHHHHHHHHHhhhc-----------------------------cCChHHHHHH-HHHHhhcccchhhHHHHHHhhhccC
Q 009469          279 VIWWSVATVLTPVAA-----------------------------RIGLPFLLIM-RAFMGIGEGVAMPAMNNMLSKWIPV  328 (534)
Q Consensus       279 ~~~~~i~~~l~~~~~-----------------------------~~~~~~ll~~-r~l~Gig~g~~~~~~~~~i~~~~~~  328 (534)
                      .++......+.....                             ..+++.+++. -++.|++.-.......++-++...+
T Consensus       340 ~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp  419 (488)
T KOG2325|consen  340 FLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP  419 (488)
T ss_pred             HHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC
Confidence            444443333221110                             0012233443 3455666666677788999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469          329 SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       329 ~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      ++++.+.+++.....++..+||++...+....|.|+...+.+...++...++..+.+
T Consensus       420 ~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~  476 (488)
T KOG2325|consen  420 RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK  476 (488)
T ss_pred             ccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888877766666555555444433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.25  E-value=0.16  Score=53.15  Aligned_cols=130  Identities=18%  Similarity=0.068  Sum_probs=95.3

Q ss_pred             HHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh---hhcc-----CC
Q 009469          225 NMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---VAAR-----IG  296 (534)
Q Consensus       225 ~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~---~~~~-----~~  296 (534)
                      .++.....+...-|+++..+|..-+...+....+.++..++.+|+|..+.-.++...-.+...++.   +.+.     .+
T Consensus       276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s  355 (432)
T PF06963_consen  276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS  355 (432)
T ss_pred             cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence            345555566666699999999999999999999999999999999998887777664443333222   2221     12


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 009469          297 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP  354 (534)
Q Consensus       297 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~  354 (534)
                      ...++.+-++.=+|.=+..-...-++.|..|+++||...|.-.+..++-.++-..++-
T Consensus       356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            2334444444446665667788889999999999999999999988888877666544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.18  E-value=0.037  Score=58.30  Aligned_cols=123  Identities=14%  Similarity=0.118  Sum_probs=95.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHh-hhccC-------ChHHHHHHHHHHhhc
Q 009469          239 WNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTP-VAARI-------GLPFLLIMRAFMGIG  310 (534)
Q Consensus       239 ~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~-~~~~~-------~~~~ll~~r~l~Gig  310 (534)
                      .++...+.+..+..++..++..+...+.-++.-|+++.+..++.++..+.-. +....       +.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            7888888888888888888988888888888888888888777766554322 11110       123334445666666


Q ss_pred             ccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          311 EGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       311 ~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      ....+-+...+++++.|+..-|+.+++..+..++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            667777888999999999999999999999999999999999999987665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.17  E-value=0.022  Score=62.94  Aligned_cols=145  Identities=12%  Similarity=0.150  Sum_probs=94.0

Q ss_pred             HHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhCC--chHHHHHHHHHHHHHHHHh
Q 009469          215 AFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFGG--KPVLGFGVIWWSVATVLTP  290 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l-~~~~~~~~~G~l~Dr~Gr--r~~l~~g~~~~~i~~~l~~  290 (534)
                      ..++.......+...+|. +.+.+|+++.+++++.+...+ +.+++.+++|+++||++.  |+++.+++++..++.+++.
T Consensus       338 ~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~  417 (633)
T TIGR00805       338 AQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCS  417 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455556665 456799999999999988776 678999999999999984  4666666666655543311


Q ss_pred             -------------------------------------hhcc---------------------------------------
Q 009469          291 -------------------------------------VAAR---------------------------------------  294 (534)
Q Consensus       291 -------------------------------------~~~~---------------------------------------  294 (534)
                                                           +...                                       
T Consensus       418 ~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi  497 (633)
T TIGR00805       418 PLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCV  497 (633)
T ss_pred             HHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccc
Confidence                                                 0000                                       


Q ss_pred             -----------------CC-hHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHH-HHHHHHHHHHHHHHH
Q 009469          295 -----------------IG-LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPI  355 (534)
Q Consensus       295 -----------------~~-~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~-~~~lG~~igp~i~~~  355 (534)
                                       .+ +..+++.-++..+..+...++...++-+..|+++|..++|+... ..-+|.+-+|++.|+
T Consensus       498 ~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~  577 (633)
T TIGR00805       498 QTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGL  577 (633)
T ss_pred             cCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhh
Confidence                             00 11233333333333344445555566678889999999999776 445688888999998


Q ss_pred             hhcc
Q 009469          356 LIQK  359 (534)
Q Consensus       356 l~~~  359 (534)
                      ++|.
T Consensus       578 ~iD~  581 (633)
T TIGR00805       578 LIDV  581 (633)
T ss_pred             hhhc
Confidence            8874

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.15  E-value=0.052  Score=57.07  Aligned_cols=111  Identities=13%  Similarity=0.044  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCc-hHHHHHHHHHHHHHHHHhhhcc----------CChHHHHHHHHHHhhcccc
Q 009469          245 GLIQSSFFWGYLLTQIVGGIWADKFGGK-PVLGFGVIWWSVATVLTPVAAR----------IGLPFLLIMRAFMGIGEGV  313 (534)
Q Consensus       245 g~i~s~~~l~~~~~~~~~G~l~Dr~Grr-~~l~~g~~~~~i~~~l~~~~~~----------~~~~~ll~~r~l~Gig~g~  313 (534)
                      -.+..++.++-.+|..+..+.. .-++| +.+.+..++-.+...++.++..          .+-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            4566677777777776543321 11222 1333333333333323222210          1345566778899999999


Q ss_pred             hhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL  356 (534)
Q Consensus       314 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l  356 (534)
                      ..+.++.+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999998888888888888888765443

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.09  E-value=0.034  Score=58.32  Aligned_cols=51  Identities=14%  Similarity=0.071  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhhCCChhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          445 TWMPTYYNQVLKFNLTE-SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       445 ~~lp~~~~~~~g~s~~~-~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                      .+...++.+.+|++..+ .|.+...+..+.++..+++|+++||+|.|+++..
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l   97 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVL   97 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            33444555568999999 9999999999999999999999999999986543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.76  E-value=0.028  Score=57.99  Aligned_cols=126  Identities=17%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhC----CchHHHH-------HHHHHHHHHHHHhhhccCChHHHHHHHH
Q 009469          237 FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFG----GKPVLGF-------GVIWWSVATVLTPVAARIGLPFLLIMRA  305 (534)
Q Consensus       237 ~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~G----rr~~l~~-------g~~~~~i~~~l~~~~~~~~~~~ll~~r~  305 (534)
                      .|.+..+.-++..+...+..+|.+++|.++||+-    +-....+       +..+.+...++....+..+.+ +.+..+
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~-~~~il~  356 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMI-FGLILF  356 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence            3545555566778888888999999999999942    2111222       222222222222222322222 233334


Q ss_pred             HHhhcc-cchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhccc-Cch
Q 009469          306 FMGIGE-GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKF-GWP  363 (534)
Q Consensus       306 l~Gig~-g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~-gw~  363 (534)
                      +.|+-. -..++...-+..+..|+++|..++++-.....+ |-.-+|.+.|.+.++. ||+
T Consensus       357 ~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  357 LVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            445432 334556667888999999999999998775554 4555565888888863 555

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.36  E-value=0.16  Score=39.98  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          438 WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       438 ~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                      .+-+.+...+|...++ .++|..+++++.+...++.++|.+...++.++..+++
T Consensus         6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~   58 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR   58 (85)
T ss_pred             hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            3445666778888877 6999999999999999999999999999988866554

Note that many members are hypothetical proteins.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.13  E-value=0.075  Score=50.86  Aligned_cols=101  Identities=18%  Similarity=0.133  Sum_probs=56.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHh---hc--ccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhh
Q 009469          329 SERSRSLAFVYSGMYLGSVTGLAVSPIL---IQ--KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL  403 (534)
Q Consensus       329 ~~rg~~~gi~~~~~~lG~~igp~i~~~l---~~--~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~  403 (534)
                      ++|+....+...+.++|.++..+..-.-   .+  .-.|++++.+.+++.++.+++...+-.+-+...+.. ++++.   
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~-k~~k~---   77 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKE-KQEKE---   77 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc-ccccc---
Confidence            4555555566667777776654332111   11  135999999888888777777666644432222210 11000   


Q ss_pred             CCCccccccccccHHHhhcchhHHHHHHHHHHHH
Q 009469          404 GGSISKEAVSVIPWKLILSKAPVWALIISHFCHN  437 (534)
Q Consensus       404 ~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~  437 (534)
                          +..........+.+|++..|...+......
T Consensus        78 ----~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL  107 (267)
T PF07672_consen   78 ----NSTLSKKPSYKSILKEKETWKWILIYGIWL  107 (267)
T ss_pred             ----cccccccchHHHHHccchHHHHHHHHHHHh
Confidence                001111245778899999888777766544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=94.96  E-value=0.48  Score=47.74  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          454 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       454 ~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      .+|++..+.+.++....+.+++...+.|.++||+|||+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~  101 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA  101 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence            489999999999999999999999999999999999974

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=94.23  E-value=1.1  Score=37.65  Aligned_cols=112  Identities=20%  Similarity=0.175  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHH
Q 009469          340 SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKL  419 (534)
Q Consensus       340 ~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (534)
                      ....++..++.++.+.+.+++|.|..+.....+..+..+..... +                                  
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~----------------------------------   49 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-S----------------------------------   49 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-c----------------------------------
Confidence            34567888888899999999998887765554444333322211 0                                  


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          420 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK--FNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG  491 (534)
Q Consensus       420 ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g--~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~  491 (534)
                           ..+...+..++...+..........+..+...  ......+.......++..++..+.+++.|..+.+.
T Consensus        50 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  118 (141)
T TIGR00880        50 -----NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA  118 (141)
T ss_pred             -----cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHH
Confidence                 01122222222222322222333333333221  12234556666777888888888899988777554

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.75  E-value=0.011  Score=56.10  Aligned_cols=65  Identities=8%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             ccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHH
Q 009469          415 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM  479 (534)
Q Consensus       415 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i  479 (534)
                      .+|..-+++-.+....+...+.-.....-..|++.|..+.++++...-+++-++.++.......+
T Consensus       192 m~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v  256 (412)
T KOG4830|consen  192 MHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMV  256 (412)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhh
Confidence            35666677778888888888888888888889999988877777666666666666655544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.49  E-value=0.021  Score=61.67  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHH-HHHHHHHHHHHHHhhhC--CchHHHHHHHHHHHHHHH
Q 009469          213 FSAFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFW-GYLLTQIVGGIWADKFG--GKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l-~~~~~~~~~G~l~Dr~G--rr~~l~~g~~~~~i~~~l  288 (534)
                      .++..........+..+.|. ++.+|+.++.+.+++.++..+ +.++|.+++|++..|+.  .|..+.+..+...+..++
T Consensus       311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~  390 (539)
T PF03137_consen  311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL  390 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence            33344444555556666665 577899999999988766655 66788999999999985  344433333322222221


Q ss_pred             ------Hhh-----h---ccC--------------------------------------ChHHHHHHHHHHhhcccchhh
Q 009469          289 ------TPV-----A---ARI--------------------------------------GLPFLLIMRAFMGIGEGVAMP  316 (534)
Q Consensus       289 ------~~~-----~---~~~--------------------------------------~~~~ll~~r~l~Gig~g~~~~  316 (534)
                            ..+     +   ..+                                      .+..+++..++.-+..+...+
T Consensus       391 ~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~  470 (539)
T PF03137_consen  391 YSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV  470 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc
Confidence                  000     0   000                                      123344444454455555566


Q ss_pred             HHHHHHhhhccCCcchhHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 009469          317 AMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQK  359 (534)
Q Consensus       317 ~~~~~i~~~~~~~~rg~~~gi~~~-~~~lG~~igp~i~~~l~~~  359 (534)
                      +...++-+.+|+++|..|+|+... ...+|.+-||++.|.++|.
T Consensus       471 p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  471 PSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------
T ss_pred             chheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            666777788999999999999776 4557889999999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=92.33  E-value=0.76  Score=44.35  Aligned_cols=55  Identities=9%  Similarity=0.099  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 009469          439 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT  495 (534)
Q Consensus       439 ~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~i~  495 (534)
                      ..|.+..|-|.. ++.+|++..+...+.....++..+| ++.|.+.|++|.+..+..
T Consensus        17 t~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~i   71 (250)
T PF06813_consen   17 TTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLI   71 (250)
T ss_pred             cccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHH
Confidence            445566665554 4568999999999999999998875 889999999998865443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=92.09  E-value=4  Score=42.27  Aligned_cols=99  Identities=8%  Similarity=-0.027  Sum_probs=71.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHH--HHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhH
Q 009469          240 NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGV--IWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPA  317 (534)
Q Consensus       240 s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~--~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~  317 (534)
                      ...--|.+-++..+...++.+..|++-.++.+-.-+.++.  ++.+...++++..+  +.+...++-++.+.......+.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~--~Iwv~Y~~yIif~~~y~fliTi  360 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG--NIWVCYAGYIIFRSLYMFLITI  360 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344588888888999999999999977776644444333  33344445555555  8888888888888777778888


Q ss_pred             HHHHHhhhccCCcchhHHHHHHH
Q 009469          318 MNNMLSKWIPVSERSRSLAFVYS  340 (534)
Q Consensus       318 ~~~~i~~~~~~~~rg~~~gi~~~  340 (534)
                      +..-++.....+.-|..+|+...
T Consensus       361 A~~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  361 ASFQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHHHHhccccceeeeeeeHHH
Confidence            88888888877777888777554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.01  E-value=0.055  Score=54.23  Aligned_cols=109  Identities=12%  Similarity=0.051  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHHHHHHHHhhhc---c--------CChHHHHHHHHHHhhcccc
Q 009469          246 LIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAA---R--------IGLPFLLIMRAFMGIGEGV  313 (534)
Q Consensus       246 ~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~i~~~l~~~~~---~--------~~~~~ll~~r~l~Gig~g~  313 (534)
                      .++.++.++-.+|..+.++.-=+ ..+|+++ +..+.-.+...++.++.   .        .+-+.+++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            35667888888888877664211 1244443 33333222222222221   0        1234566778889999999


Q ss_pred             hhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009469          314 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI  355 (534)
Q Consensus       314 ~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~  355 (534)
                      ..+..+.+..+..++++|..+-.+......+|-.+|..++-.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             --HHHH------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            989999999999999999888888777777787777766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.32  E-value=18  Score=38.50  Aligned_cols=74  Identities=19%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             HHHHHhhcccchhhHHHHHHhhhcc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 009469          303 MRAFMGIGEGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW  376 (534)
Q Consensus       303 ~r~l~Gig~g~~~~~~~~~i~~~~~-~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~  376 (534)
                      .-++.|+.........-..+.+.+| +++|...+|-+....++..++..++++.+.+++||.....+.-++.++.
T Consensus       272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3345567767777777788888887 4578899999988888888777778899999999998877666555553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=90.71  E-value=20  Score=36.12  Aligned_cols=150  Identities=17%  Similarity=0.143  Sum_probs=84.3

Q ss_pred             HHHHhhh-CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCc-hH---HHHHHHHH---HHHHHHHhhhccCChHHHHH
Q 009469          231 LPMSKEF-NWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGK-PV---LGFGVIWW---SVATVLTPVAARIGLPFLLI  302 (534)
Q Consensus       231 ~~~~~~~-g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr-~~---l~~g~~~~---~i~~~l~~~~~~~~~~~ll~  302 (534)
                      ..+...+ |-+.-+.+++.+.|.....+|+...-++.|.--.- .+   +++|.+.-   .+..+.+++-...+-+.+.+
T Consensus        31 ~tLatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~  110 (508)
T COG4262          31 GTLATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYA  110 (508)
T ss_pred             HHHHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHH
Confidence            3344433 66777889999999999999999888877643222 21   12222221   11122222222224566778


Q ss_pred             HHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cccCchHHHHHHHHHHHHHHHHHH
Q 009469          303 MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-QKFGWPSVFYSFGSLGSIWFALWL  381 (534)
Q Consensus       303 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~-~~~gw~~~f~i~~~~~~i~~i~~~  381 (534)
                      .-++.|.-.|.-.|..+.++..-.  .+-....+.....-.+|.+.+.++-.++. ...|..-.-...+++.++..++.+
T Consensus       111 lt~vIG~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~lllP~LGl~rta~laG~~Nl~aAvv~~  188 (508)
T COG4262         111 LTAVIGVLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVTL  188 (508)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence            888889888998999998887722  11222223333346677776666655543 444543333345555554444333


Q ss_pred             H
Q 009469          382 K  382 (534)
Q Consensus       382 ~  382 (534)
                      +
T Consensus       189 f  189 (508)
T COG4262         189 F  189 (508)
T ss_pred             H
Confidence            3

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.58  E-value=1.7  Score=42.78  Aligned_cols=136  Identities=15%  Similarity=0.110  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhh
Q 009469          245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK  324 (534)
Q Consensus       245 g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~  324 (534)
                      |.+.-.-.+...+..+....+.||+..-.=..+..++.+.+.++.+++.  +.++-+.+-.+..++.|..-..-.++-+ 
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss-  141 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSS-  141 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhc-
Confidence            4444455556666677777788887655445556677788888888888  7788888888888888776554444433 


Q ss_pred             hccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--cCchHHHHHHHHHHHHHHHHHHHhhcCC
Q 009469          325 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLGSIWFALWLKKAYSS  387 (534)
Q Consensus       325 ~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~--~gw~~~f~i~~~~~~i~~i~~~~~~~~~  387 (534)
                      .+++    ...+.+..+.+.++++|..--.++.+.  +.-+.+.++...+.++.....++..+.+
T Consensus       142 ~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  142 RYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             cCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            3322    345566677777777777666666553  4467778777777766666666655544

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=87.38  E-value=56  Score=36.88  Aligned_cols=33  Identities=15%  Similarity=0.108  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 009469          341 GMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG  373 (534)
Q Consensus       341 ~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~  373 (534)
                      +..++.++..+++.+++..++|..++.+.++++
T Consensus       109 ~M~lT~livAL~a~~Li~GL~~~~ALLLGAILA  141 (810)
T TIGR00844       109 VMTSGWLVIALFVWILVPGLNFPASLLMGACIT  141 (810)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhc
Confidence            344455555555555545567777776665554

This model is specific for the fungal members of this family.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=85.51  E-value=3.7  Score=42.78  Aligned_cols=115  Identities=17%  Similarity=0.050  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhh
Q 009469          245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK  324 (534)
Q Consensus       245 g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~  324 (534)
                      .|-..++.+...+.+....++.+|+|-|+.+..+...+.++..+.++.+  +.......+-..|+-.+.....-...++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~--~~~~~~~~~~~~G~~~~~~~~~p~~l~~~  412 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVL--NTYVVLSHRSTAGILSSPLLTVPYGALAL  412 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhh--hHHHHHHHHhhcceeecchhcccHHHHHH
Confidence            4556677888889999999999999988887777776777777777666  55666667777775555444444444443


Q ss_pred             hccCC-----------------------cchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 009469          325 WIPVS-----------------------ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG  361 (534)
Q Consensus       325 ~~~~~-----------------------~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g  361 (534)
                      +.-.+                       .+|...|+.+....+-.++..+..|.+.+.+|
T Consensus       413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence            33111                       23555666677777777776666677666654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=83.24  E-value=15  Score=37.03  Aligned_cols=96  Identities=7%  Similarity=-0.088  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhh
Q 009469          245 GLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK  324 (534)
Q Consensus       245 g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~  324 (534)
                      |..-++..+..+++.+..|.+--.+.|..-++++..-...+.+++.++.+.+.|...++-++.+.-.....+.+..-++.
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            45666677777888899999977776654444333333334444444444477777777777776667777788888888


Q ss_pred             hccCCcchhHHHHHHH
Q 009469          325 WIPVSERSRSLAFVYS  340 (534)
Q Consensus       325 ~~~~~~rg~~~gi~~~  340 (534)
                      -...+.-|..+|+...
T Consensus       354 nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTF  369 (433)
T ss_pred             hhhhhhheeeeehHHH
Confidence            8877777888877554

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=82.44  E-value=81  Score=34.51  Aligned_cols=30  Identities=23%  Similarity=0.109  Sum_probs=17.1

Q ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009469          458 NLTESGLFCVLPWLTMAVFANMGGWIADTL  487 (534)
Q Consensus       458 s~~~~g~l~~~~~~~~iig~~i~g~l~dr~  487 (534)
                      +....++++..++++..+--++.+....++
T Consensus       323 ~~~~g~~~l~~~gLG~~~Plll~~~~~~~~  352 (571)
T PRK00293        323 DLLLGGLTLYLLALGMGLPLILITTFGNKL  352 (571)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455556666666666655555555544444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=82.12  E-value=11  Score=39.89  Aligned_cols=64  Identities=11%  Similarity=0.075  Sum_probs=48.1

Q ss_pred             HHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 009469          300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP  363 (534)
Q Consensus       300 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~  363 (534)
                      +++.-++..+.....+.+..+.-+++.+|.-=|+.|.+.+...++|+---..+.-++++.+.++
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            3445566667777888999999999999999999999999999988765444444455544433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=81.78  E-value=45  Score=31.04  Aligned_cols=50  Identities=16%  Similarity=0.231  Sum_probs=25.1

Q ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHH
Q 009469          324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS  374 (534)
Q Consensus       324 ~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~  374 (534)
                      +++..+++.+.-.......-++-.+|.++++.+.+..+. +..++.+++.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~l~  202 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGF-WALLLPALLLL  202 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence            333334433333444445555566666666667666664 34444443333

The function of this family is unknown although a few members are thought to be membrane proteins.

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=81.07  E-value=54  Score=31.50  Aligned_cols=24  Identities=21%  Similarity=0.092  Sum_probs=14.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhh
Q 009469          361 GWPSVFYSFGSLGSIWFALWLKKA  384 (534)
Q Consensus       361 gw~~~f~i~~~~~~i~~i~~~~~~  384 (534)
                      .-+|++++.+++.++..+-.+..-
T Consensus       128 pr~~T~~~~t~LF~iFGlkmL~eg  151 (294)
T KOG2881|consen  128 PRKYTYYLATALFLIFGLKMLKEG  151 (294)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667766666666555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-66
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-11
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	7e-07
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  221 bits (565), Expect = 1e-66
 Identities = 60/358 (16%), Positives = 124/358 (34%), Gaps = 18/358 (5%)

Query: 182 PSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNS 241
           P +A LP  ++  T         RW + L  F  +    + R N ++A+ P   E  ++ 
Sbjct: 8   PHKARLPAAEIDPTYRRL-----RWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSR 61

Query: 242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPF 299
             +G   S     Y  ++ + G  +D+   +  L  G+I  +   +       A   +  
Sbjct: 62  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 121

Query: 300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQ 358
           + ++    G  +G+  P     +  W    ER   ++       +G  +  L     +  
Sbjct: 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEA-----VS 413
              W +  Y       +           +P+       EE ++      +++A       
Sbjct: 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 241

Query: 414 VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 473
            I  + +L    +W + I++       + +L W PTY  +V  F L +S     L     
Sbjct: 242 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301

Query: 474 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC 531
                + GW++D +       T V      +  +  A  +  ++    P + ++CM  
Sbjct: 302 IPGTLLCGWMSDKVFRGNRGATGVFF----MTLVTIATIVYWMNPAGNPTVDMICMIV 355

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 49/322 (15%), Positives = 111/322 (34%), Gaps = 51/322 (15%)

Query: 226 MSIAI-LP----MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVI 280
           M+  I +P    M+++ N     V  +  ++   Y ++Q+  G  +D+ G +PV+  G+ 
Sbjct: 14  MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73

Query: 281 WWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP--VSERSRSLAFV 338
            + +AT++    + + +  L+   A  G+G GV       ++++ +P  + ER++ L   
Sbjct: 74  IFMLATLVAVTTSSLTV--LIAASAMQGMGTGVGG-----VMARTLPRDLYERTQ-LRHA 125

Query: 339 YSGMYLGSVTGLA--VSPI----LIQKFGWPSVFYS---FGSLGSIWFALWLKKAYSSPK 389
            S   L     ++  ++P+    L   + W + +       +  +   A W+        
Sbjct: 126 NS--LLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM-------- 175

Query: 390 EDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT 449
             PE R  +               +  +K +   +     ++       G          
Sbjct: 176 --PETRPVDAPR---------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV 224

Query: 450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP 509
               VL  +     +  +LP          G W A     +  ++     I   +   G 
Sbjct: 225 LMGAVLGLSSMTVSILFILPIPAAFF----GAWFAGRPNKRFSTLMWQSVICCLLA--GL 278

Query: 510 AFFLTQLSHVRTPAMAVLCMAC 531
             ++     V      ++  A 
Sbjct: 279 LMWIPDWFGVMNVWTLLVPAAL 300

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 48/305 (15%), Positives = 97/305 (31%), Gaps = 38/305 (12%)

Query: 206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIW 265
            +   L  S F L  +      I +    + F   +   GLIQS+F++GY +  I  GI 
Sbjct: 25  IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84

Query: 266 ADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAM--PAMNNMLS 323
             K   K  +  G+  +++   L   AA I   + L +     I  G+     A N  ++
Sbjct: 85  MKKLSYKAGIITGLFLYALGAALFWPAAEIMN-YTLFLVGLFIIAAGLGCLETAANPFVT 143

Query: 324 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-----------------------F 360
              P S     L    +    G++  +     LI                          
Sbjct: 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHS 203

Query: 361 GWPSVFYSFGSLGSIWFALWLKKAYSS-PKEDPELRAEEKRHILGGSISKEAVSVIPWKL 419
              SV   +  + +I   + L    +  P    +  ++ K+     S+S+          
Sbjct: 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSR---------- 253

Query: 420 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL-KFNLTESGLFCVLPWLTMAVFAN 478
           +         +++ FC+        +++  Y  + +       +  +     +   +   
Sbjct: 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313

Query: 479 MGGWI 483
            G W+
Sbjct: 314 TGTWL 318

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 10/181 (5%)

Query: 232 PMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLTP 290
             + + +    T   I + +     L+  +GG  AD+  G +P + +G +   +  ++  
Sbjct: 44  ISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV-- 101

Query: 291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV--YSGMYLGSVT 348
           +A   G   L      + IG G   P ++ ++       +R R   F     G+ LG+  
Sbjct: 102 LALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI 161

Query: 349 GLAVSPILIQKFGWPSVFYSFG---SLGSIWFALWLKK--AYSSPKEDPELRAEEKRHIL 403
              +     +  G+   F        +G + +    KK       +    L  EE + +L
Sbjct: 162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221

Query: 404 G 404
            
Sbjct: 222 V 222

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 15/140 (10%), Positives = 38/140 (27%), Gaps = 8/140 (5%)

Query: 260 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 319
               +  ++ GGK  L       SV  + +  A       ++I++          +    
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCF 334

Query: 320 NMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI--- 375
             ++    V   +      +     L  +    ++  + +  G+   +   G +      
Sbjct: 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL 394

Query: 376 --WFALWLKKAYSSPKEDPE 393
              F L      S  +    
Sbjct: 395 ISVFTLSGPGPLSLLRRQVN 414

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 54/443 (12%), Positives = 107/443 (24%), Gaps = 155/443 (34%)

Query: 148 QSLDVK--EDRICAFYKSDEYD-ITEAKVDSLQSTEI-------PSEAV--LPDGDLQET 195
            + D K  +D   +    +E D I  +K     +  +         E V    +  L+  
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 196 SPW-WEQFPKRWVVVLLCFSAFLLC--NMDRVNMSIAILPMSKEFNWNSTTVGL--IQSS 250
             +             +    ++     +   N   A   +S+   +      L  ++ +
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 251 FFWGYLLTQIVGGIWADKFGGKPVL--------------GFGVIWWSVATVLTPVAARIG 296
                +L   V G       GK  +               F + W ++    +P      
Sbjct: 151 ---KNVLIDGVLGS------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 297 LPFLL--IMRAFMGIGEGVAMPAMN------------------NML-------SKW---- 325
           L  LL  I   +    +  +   +                   N L       +      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 326 ------IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 379
                 I ++ R + +           ++    + I +                      
Sbjct: 262 FNLSCKILLTTRFKQVTDF--------LSAATTTHISLDHHSMT--LTPDEVKS--LLLK 309

Query: 380 WLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG 439
           +L      P++ P                 E ++  P    LS       II+    +  
Sbjct: 310 YLD---CRPQDLPR----------------EVLTTNP--RRLS-------IIAESIRDG- 340

Query: 440 TFILLTWMPTYYNQVLKFNLT---ESGL--------------FCVLP---WLTMAVFANM 479
              L TW    +  V    LT   ES L                V P    +   + + +
Sbjct: 341 ---LATW--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 480 GGW----------IADTLVSKGL 492
             W          + + L    L
Sbjct: 396 --WFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.93
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.8
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.57
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.38
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.36
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.23
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.2
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.9
2xut_A	524	Proton/peptide symporter family protein; transport	98.7

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=4.9e-30  Score=267.61  Aligned_cols=276  Identities=14%  Similarity=0.186  Sum_probs=236.1

Q ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHH
Q 009469          204 KRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWS  283 (534)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~  283 (534)
                      ++|..+..+++..+...+......+..|.+.+++|++..++|++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            34666677777778888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 009469          284 VATVLT---PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-QK  359 (534)
Q Consensus       284 i~~~l~---~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~-~~  359 (534)
                      ++.+++   ++++  +++.+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|.+++|++++.+. +.
T Consensus       103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999998   7777  89999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             cC-------------------------chHHHHHHHHHHHHHHHHHHHhh-cCCCCCChhhhHHHHhhhhCCCccccccc
Q 009469          360 FG-------------------------WPSVFYSFGSLGSIWFALWLKKA-YSSPKEDPELRAEEKRHILGGSISKEAVS  413 (534)
Q Consensus       360 ~g-------------------------w~~~f~i~~~~~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (534)
                      .+                         ||+.|++.+++.++..++.+... ++.+++.++             .+++...
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------~~~~~~~  247 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-------------DAKQGSF  247 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-------------CSSTTSH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc-------------cccccch
Confidence            54                         99999888777766655544432 211111000             0111122


Q ss_pred             cccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          414 VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY-YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       414 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~-~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      ..++++++++|.++...+..++..........++|.| +++.+|++..+++++.....++.++++++.|++.||+++|+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~  327 (438)
T 3o7q_A          248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3457788999999999999999888889999999999 888789999999999999999999999999999999999975


Q ss_pred             hH
Q 009469          493 SI  494 (534)
Q Consensus       493 ~i  494 (534)
                      +.
T Consensus       328 ~~  329 (438)
T 3o7q_A          328 LA  329 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=2.9e-30  Score=270.19  Aligned_cols=287  Identities=16%  Similarity=0.253  Sum_probs=240.8

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +.+|..+..+++..+...+....+.+.+|.+.+++ .+..++|++.+++.++..++.+++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            34577778888888888899999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh----hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          283 SVATVLTPV----AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ  358 (534)
Q Consensus       283 ~i~~~l~~~----~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~  358 (534)
                      +++.+++++    ++  +++.++++|++.|++.+...++..+++.|++|+++|++++++...+..+|.+++|++++++.+
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998    77  788899999999999999999999999999999999999999999999999999999999989


Q ss_pred             ccC-chHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHHh-----hhhCCCccccccccccHHHhhcchhHHHHHHH
Q 009469          359 KFG-WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR-----HILGGSISKEAVSVIPWKLILSKAPVWALIIS  432 (534)
Q Consensus       359 ~~g-w~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~  432 (534)
                      ..| ||+.|++.+++.++..++.++..++.++.......++..     .......+........++.+++++.++.+.+.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  260 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence            898 999999999888777766666666544322111000000     00000000111111124677889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hcccc
Q 009469          433 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL--VSKGL  492 (534)
Q Consensus       433 ~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~--g~r~~  492 (534)
                      .++..++...+..++|.|+++.+|++..+++++.+...++.+++.++.|++.||+  ++|+.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            9999999999999999999988899999999999999999999999999999999  88764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.95  E-value=1.3e-27  Score=244.50  Aligned_cols=262  Identities=14%  Similarity=0.185  Sum_probs=228.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHH
Q 009469          210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~  289 (534)
                      +++++..+...+....+.+.+|.+.+++|.+..+++++.+++.++..++.+++|+++||+|||+++.++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44556667777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      ++++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+..|||+.|++.
T Consensus        83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9988  78999999999999999999999999999999999999999999999999999999999999989999999988


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      +++.++..++.....+++++++++.                +....++++++++|.++...+..++..........++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877766554444444433221110                011234566888999999999999988899999999999


Q ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009469          450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS  489 (534)
Q Consensus       450 ~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~  489 (534)
                      |+++.+|+++.+.+.+.....++.+++.++.+++.||+++
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998889999999999999999999999999999999987

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.93  E-value=5.6e-25  Score=233.15  Aligned_cols=277  Identities=14%  Similarity=0.127  Sum_probs=200.9

Q ss_pred             HHHHHHhhhhHHHH-hHHHHHhh-----hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh-hCCchHHHHHHHHHHHHHH
Q 009469          215 AFLLCNMDRVNMSI-AILPMSKE-----FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADK-FGGKPVLGFGVIWWSVATV  287 (534)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~-----~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr-~Grr~~l~~g~~~~~i~~~  287 (534)
                      ..+...+..+.+.. ..+++.++     +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            33444444444433 34445555     99999999999999999999999999999999 8999999999999999999


Q ss_pred             HHhhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHH
Q 009469          288 LTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV  365 (534)
Q Consensus       288 l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~--rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~  365 (534)
                      ++++++  +++.++++|++.|++.+...+...++++|++|+++  |+.++++++.+..+|..++|.+++.+.+..||++.
T Consensus       101 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  178 (491)
T 4aps_A          101 VLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA  178 (491)
T ss_dssp             HHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999988  88899999999999999999999999999999988  77888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCC-----ChhhhHHHHhhhh--------------------CCCcccc----------
Q 009469          366 FYSFGSLGSIWFALWLKKAYSSPKE-----DPELRAEEKRHIL--------------------GGSISKE----------  410 (534)
Q Consensus       366 f~i~~~~~~i~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------------~~~~~~~----------  410 (534)
                      |++.++..++..++.+...++..++     ......++..+..                    +......          
T Consensus       179 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (491)
T 4aps_A          179 FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAI  258 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHH
Confidence            9998777666655554443321111     1100111111100                    0000000          


Q ss_pred             -----------ccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHH
Q 009469          411 -----------AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM  479 (534)
Q Consensus       411 -----------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i  479 (534)
                                 ...........+....+.+.+..++....+.....++|.|+.+..+.+....+.+.....++.+++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (491)
T 4aps_A          259 AIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPF  338 (491)
T ss_dssp             HHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHH
Confidence                       000000011111223455555555656666667778899999878888778888888999999999999


Q ss_pred             HHHHHHHhhcccch
Q 009469          480 GGWIADTLVSKGLS  493 (534)
Q Consensus       480 ~g~l~dr~g~r~~~  493 (534)
                      .+++.||++||+..
T Consensus       339 ~~~l~~r~~~r~~~  352 (491)
T 4aps_A          339 FAWLWTAWKKNQPS  352 (491)
T ss_dssp             HHHHHHHTTTC---
T ss_pred             HHHHHHHHhccCCC
Confidence            99999999998653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.92  E-value=1.5e-23  Score=221.99  Aligned_cols=287  Identities=18%  Similarity=0.232  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCC--------CcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHH
Q 009469          206 WVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNW--------NSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGF  277 (534)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~  277 (534)
                      |.+.+++.++.++.+++...++.+++.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||+++++
T Consensus        11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~   90 (491)
T 4gc0_A           11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4455556667788888888888899998887743        23467899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh------------------hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHH
Q 009469          278 GVIWWSVATVLTPV------------------AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY  339 (534)
Q Consensus       278 g~~~~~i~~~l~~~------------------~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~  339 (534)
                      +.+++.++.+++++                  ++  +++.++++|+++|+|.|+..+....+++|+.|+++|++..++.+
T Consensus        91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~  168 (491)
T 4gc0_A           91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ  168 (491)
T ss_dssp             HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence            99999999999884                  45  89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccc--------CchHHHHHHHHHHHHHHHHHHHhhcCCCCC-----ChhhhHHHHhhhh---
Q 009469          340 SGMYLGSVTGLAVSPILIQKF--------GWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----DPELRAEEKRHIL---  403 (534)
Q Consensus       340 ~~~~lG~~igp~i~~~l~~~~--------gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~---  403 (534)
                      .+..+|.++++.++..+....        +||+.+.+.++..++ .++..+..++.|+.     +.+...+..+...   
T Consensus       169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999999888776532        355555444444333 33333444544321     1000000000000   


Q ss_pred             -------C-CCccccccccccHHHhhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHH
Q 009469          404 -------G-GSISKEAVSVIPWKLILSKAPVWALIISH-FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA  474 (534)
Q Consensus       404 -------~-~~~~~~~~~~~~~~~ll~~~~~~~~~l~~-~~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~i  474 (534)
                             . .....+..........++.+......... +....+.+.+..|.+.+.+. .+.+.........+..+..+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  326 (491)
T 4gc0_A          248 LATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINL  326 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHH
Confidence                   0 00000000111122233334443333333 33344456666677776666 68888888888888889999


Q ss_pred             HHHHHHHHHHHHhhcccchHHH
Q 009469          475 VFANMGGWIADTLVSKGLSITA  496 (534)
Q Consensus       475 ig~~i~g~l~dr~g~r~~~i~~  496 (534)
                      ++.++.+++.||+|||+.++..
T Consensus       327 ~~~~~~~~l~dr~Grr~~~~~~  348 (491)
T 4gc0_A          327 TFTVLAIMTVDKFGRKPLQIIG  348 (491)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcchhccc
Confidence            9999999999999999866543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.85  E-value=2.5e-21  Score=201.14  Aligned_cols=262  Identities=13%  Similarity=0.048  Sum_probs=171.4

Q ss_pred             hhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHH---HHHhhhccCCh
Q 009469          222 DRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVAT---VLTPVAARIGL  297 (534)
Q Consensus       222 ~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~---~l~~~~~~~~~  297 (534)
                      ......+.+|. +.+++|+++.++|++.+++.++..++++++|+++||+|||++++++.++++++.   +...+.... .
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-~  100 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL-Q  100 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            33444455665 456689999999999999999999999999999999999999998888765532   111222100 0


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHhhhccC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHH
Q 009469          298 PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI  375 (534)
Q Consensus       298 ~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i  375 (534)
                      ..++..+++.|++.+..++.....+.++.++  ++++.+++.......+|..++|.+++++.+ .+|++.|++.++..++
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALI  179 (417)
T ss_dssp             TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence            1123455666665555444444444444433  456777888888889999999999999886 5899999877666443


Q ss_pred             HHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009469          376 WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL  455 (534)
Q Consensus       376 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~~~~  455 (534)
                      ..++.+...+++++..+..   +.     .....+......+++++++|.++.+.+..++....+.....++|.|+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (417)
T 2cfq_A          180 LAVLLFFAKTDAPSSATVA---NA-----VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF  251 (417)
T ss_dssp             HHHHSCSSCCCCSCSSCSS---SS-----SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHcCcccccccccc---cc-----cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333222222221110000   00     000011112234567888999888777666655566666677888887754


Q ss_pred             CC---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          456 KF---NLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       456 g~---s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +.   +....+++..+..++.+++.++.++++||+|+|+.+
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l  292 (417)
T 2cfq_A          252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence            42   234456777777788889999999999999999753

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.80  E-value=2.5e-19  Score=191.25  Aligned_cols=164  Identities=16%  Similarity=0.199  Sum_probs=140.3

Q ss_pred             HHHhhhhHHHHhH-HHHHhhhC------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHHHHHHHHHH
Q 009469          218 LCNMDRVNMSIAI-LPMSKEFN------WNSTTVGLIQSSFFWGYLLTQIVGGIWADKF-GGKPVLGFGVIWWSVATVLT  289 (534)
Q Consensus       218 ~~~~~~~~~~~~~-~~~~~~~g------~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~~l~  289 (534)
                      +..+..+.....+ +++.+++|      ++..+++++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++
T Consensus        23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (524)
T 2xut_A           23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL  102 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            3333333344444 44677889      9999999999999999999999999999999 99999999999999999888


Q ss_pred             hhhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHH---HHHHHHHHHHHHHHHHHHhhcccCchHHH
Q 009469          290 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF---VYSGMYLGSVTGLAVSPILIQKFGWPSVF  366 (534)
Q Consensus       290 ~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi---~~~~~~lG~~igp~i~~~l~~~~gw~~~f  366 (534)
                      ++++ .+++.+++.|++.|++.+...+...+++.|++|+++|+++.++   ++.+..+|.+++|.+++.+.+..||++.|
T Consensus       103 ~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          103 AIFE-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             HHTS-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             HHhc-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            8775 2578899999999999999999999999999999999877666   88999999999999999999989999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009469          367 YSFGSLGSIWFALWLK  382 (534)
Q Consensus       367 ~i~~~~~~i~~i~~~~  382 (534)
                      ++.+++.++..++.+.
T Consensus       182 ~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          182 GIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888877665555444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.57  E-value=4.1e-14  Score=147.34  Aligned_cols=169  Identities=15%  Similarity=0.093  Sum_probs=141.9

Q ss_pred             HHHHHHhhhhHHHHhHHHHHhh-hCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh--CCchHHHHHHHHHH-HHHHHHh
Q 009469          215 AFLLCNMDRVNMSIAILPMSKE-FNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF--GGKPVLGFGVIWWS-VATVLTP  290 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~--Grr~~l~~g~~~~~-i~~~l~~  290 (534)
                      ..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |+|+.+.++.++.. ++.+++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (451)
T 1pw4_A          260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW  339 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            3344444555556667776555 899999999999999999999999999999999  99999888877776 6777766


Q ss_pred             hhccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCchHHHHHH
Q 009469          291 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       291 ~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      +.+..+.+.+++..++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.+.+.+..||++.|++.
T Consensus       340 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  419 (451)
T 1pw4_A          340 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM  419 (451)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred             HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            664336777888888999988888888899999999999999999999999999 9999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHh
Q 009469          370 GSLGSIWFALWLKK  383 (534)
Q Consensus       370 ~~~~~i~~i~~~~~  383 (534)
                      +++.++..++.+..
T Consensus       420 ~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          420 IGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877766665554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.38  E-value=4.4e-12  Score=131.40  Aligned_cols=151  Identities=10%  Similarity=0.028  Sum_probs=122.8

Q ss_pred             hhhhHHHHhHHHH-H-hhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChH
Q 009469          221 MDRVNMSIAILPM-S-KEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP  298 (534)
Q Consensus       221 ~~~~~~~~~~~~~-~-~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~  298 (534)
                      .....+....|.+ . +.+|.+..+.+++.++..++..++.++.|+++||+|||+++.++.++.+++.++..+.+  +.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  349 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHV  349 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHH
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcH
Confidence            3334444455554 4 44599999999999999999999999999999999999999999999988888887776  444


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHHH
Q 009469          299 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIW  376 (534)
Q Consensus       299 ~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~g-w~~~f~i~~~~~~i~  376 (534)
                      .+ +.-++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.++..++.
T Consensus       350 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          350 GL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            43 3447888999999999999999999765 888888877 566999999999999999998 999888765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.36  E-value=3.4e-12  Score=132.10  Aligned_cols=143  Identities=9%  Similarity=0.038  Sum_probs=119.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccchhhHHHH
Q 009469          241 STTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN  320 (534)
Q Consensus       241 ~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~~~~~~~~  320 (534)
                      ...++++.++..++..++.++.|+++||+|||+++.++.++.+++.++.++.+  +.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45668888888888899999999999999999999999888888877777666  6677777777788877766777789


Q ss_pred             HHhhhccCCcchhHHHH-HHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhc
Q 009469          321 MLSKWIPVSERSRSLAF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY  385 (534)
Q Consensus       321 ~i~~~~~~~~rg~~~gi-~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~  385 (534)
                      +++|.+|++.|+++.++ ++....+|..++|.++|++.+..|+...|.+.+++.++..++.+...+
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999 477888999999999999999888888888888777766665544444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.23  E-value=4.3e-10  Score=118.35  Aligned_cols=182  Identities=15%  Similarity=0.066  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH
Q 009469          209 VLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVL  288 (534)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l  288 (534)
                      ........+......+.+....+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+.....++.+.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~  358 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS  358 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence            33334444444455556666777788888888888888888888899999999999999999999999998888887766


Q ss_pred             Hhhhc--cCChHHHHHHHHHHhh-cccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc------c
Q 009469          289 TPVAA--RIGLPFLLIMRAFMGI-GEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ------K  359 (534)
Q Consensus       289 ~~~~~--~~~~~~ll~~r~l~Gi-g~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~------~  359 (534)
                      .+...  .......++.-++... ......+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+      .
T Consensus       359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~  438 (491)
T 4gc0_A          359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH  438 (491)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55432  1122222222222222 1223346678899999999999999999999999999999888776654      3


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009469          360 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKE  390 (534)
Q Consensus       360 ~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~  390 (534)
                      .++.+.|++.++++++..++.+++.||++.+
T Consensus       439 ~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          439 FHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            4677788999998888888888888876544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.20  E-value=7.4e-11  Score=124.29  Aligned_cols=159  Identities=13%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             HHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHH-----HHHHHHHHHHHHHhhhc-------
Q 009469          227 SIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG-----FGVIWWSVATVLTPVAA-------  293 (534)
Q Consensus       227 ~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~-----~g~~~~~i~~~l~~~~~-------  293 (534)
                      ...++.+ .+.++.+....+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++..+..       
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG  382 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3334443 4456777678888889999999999999999999999987655     77777777766665532       


Q ss_pred             cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 009469          294 RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLG  373 (534)
Q Consensus       294 ~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~  373 (534)
                      ..+.+.+++.-++.|++.+...+....++.|.+|+++|++++|+......+|..++|.+.+.+.+ .++.+.|++.+++.
T Consensus       383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~  461 (491)
T 4aps_A          383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGS  461 (491)
T ss_dssp             TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence            12566677788899999999889999999999999999999999999999999999999888765 46777888888777


Q ss_pred             HHHHHHHHHhhcC
Q 009469          374 SIWFALWLKKAYS  386 (534)
Q Consensus       374 ~i~~i~~~~~~~~  386 (534)
                      ++..++.+...++
T Consensus       462 ~~~~~~~~~~~~~  474 (491)
T 4aps_A          462 VVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHH
Confidence            7766666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.90  E-value=3e-10  Score=115.17  Aligned_cols=151  Identities=14%  Similarity=0.016  Sum_probs=112.9

Q ss_pred             HHHHHhhhhHHHHhHHHH-HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHH-HHHHHH--HHhh
Q 009469          216 FLLCNMDRVNMSIAILPM-SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIW-WSVATV--LTPV  291 (534)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~-~~i~~~--l~~~  291 (534)
                      .++.......+....|.+ .+.+|.++.+.+++.+...++..++.++.+++.||+|++  +..+..+ ...+..  ....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~  285 (375)
T 2gfp_A          208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW  285 (375)
T ss_dssp             HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence            344444445555566665 445899999999999999999999999999999999883  2333332 222222  1222


Q ss_pred             hccCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469          292 AARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       292 ~~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      ....+.+.+++..++.|++.+...+...+++.|.+| ++|++++|+.+....+|..++|.+.+.+.+..+|...+++.
T Consensus       286 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          286 FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            111145667777888899999889999999999997 89999999999999999999999999998877777666653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.70  E-value=2.2e-08  Score=106.24  Aligned_cols=143  Identities=10%  Similarity=0.093  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH----hhhCCc----hHHHHHHHHHHHHHHHHhhhc-------cCChHHHHHHHHHH
Q 009469          243 TVGLIQSSFFWGYLLTQIVGGIWA----DKFGGK----PVLGFGVIWWSVATVLTPVAA-------RIGLPFLLIMRAFM  307 (534)
Q Consensus       243 ~~g~i~s~~~l~~~~~~~~~G~l~----Dr~Grr----~~l~~g~~~~~i~~~l~~~~~-------~~~~~~ll~~r~l~  307 (534)
                      ..+++.....++..++.++.+++.    +|.|+|    +.+.++.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666666677777766654    555432    456677788887777766642       12566677788999


Q ss_pred             hhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc--Cc---------hHHHHHHHHHHHHH
Q 009469          308 GIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--GW---------PSVFYSFGSLGSIW  376 (534)
Q Consensus       308 Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~--gw---------~~~f~i~~~~~~i~  376 (534)
                      |++.+...+...+++.+.+|+++||+++|+++....+|..++|.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988742  23         33366666666655


Q ss_pred             HHHHHHhhc
Q 009469          377 FALWLKKAY  385 (534)
Q Consensus       377 ~i~~~~~~~  385 (534)
                      .++.+...+
T Consensus       496 ~~~~~~~~~  504 (524)
T 2xut_A          496 AIVFALYAR  504 (524)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHHHH
Confidence            555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	8e-29
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-10
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	7e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score =  116 bits (291), Expect = 8e-29
 Identities = 59/358 (16%), Positives = 124/358 (34%), Gaps = 18/358 (5%)

Query: 182 PSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNS 241
           P +A LP  ++  T         RW + L  F  +    + R N ++A +P   E  ++ 
Sbjct: 5   PHKARLPAAEIDPTYRRL-----RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQGFSR 58

Query: 242 TTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV--AARIGLPF 299
             +G   S     Y  ++ + G  +D+   +  L  G+I  +   +       A   +  
Sbjct: 59  GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 118

Query: 300 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQ 358
           + ++    G  +G+  P     +  W    ER   ++       +G  +  L     +  
Sbjct: 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178

Query: 359 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV---- 414
              W +  Y       +           +P+       EE ++      +++A       
Sbjct: 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 238

Query: 415 -IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 473
            I  + +L    +W + I++       + +L W PTY  +V  F L +S     L     
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298

Query: 474 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC 531
                + GW++D +       T     +  +  +  A  +  ++    P + ++CM  
Sbjct: 299 IPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIV 352

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 26/245 (10%), Positives = 71/245 (28%), Gaps = 4/245 (1%)

Query: 157 ICAFYKSDEYDITEAKVDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAF 216
             A  +          ++  ++          + +L     + +      ++  +  +  
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259

Query: 217 LLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLG 276
            +  +    +  +   + +  ++           + +  +   ++ G  +DK        
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319

Query: 277 FGVIWWS---VATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSR 333
            GV + +   +AT++  +         +I    +G      +  +     +  P      
Sbjct: 320 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 379

Query: 334 SLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP 392
           +  F     YL GSV   A+    +  FGW   F        +   L +       +   
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439

Query: 393 ELRAE 397
           +L  E
Sbjct: 440 QLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 29/273 (10%), Positives = 73/273 (26%), Gaps = 2/273 (0%)

Query: 210 LLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKF 269
           +     F    +         + +    + + +  G+I ++     LL Q + G+ +DK 
Sbjct: 11  MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 270 GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS 329
           G +  L + +    V      +     L    I+   +  G  +         +    + 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 330 ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK 389
           + SR   F +    +    G A+   ++      +  + F         L +   ++   
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 390 EDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT 449
                           + S +    +  +  L    ++ + +   C             T
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV--SCTYDVFDQQFANFFT 248

Query: 450 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 482
            +    +      G    +  L  A        
Sbjct: 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPL 281

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 17/186 (9%), Positives = 48/186 (25%), Gaps = 3/186 (1%)

Query: 197 PWWEQFPKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYL 256
               + PK W + L         ++     +             +   G + +       
Sbjct: 214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNA 273

Query: 257 LTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMP 316
                  +  ++ GGK  L       SV  + +  A         I++          + 
Sbjct: 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV--ILKTLHMFEVPFLLV 331

Query: 317 AMNNMLSKWIPVSERSRSLAFVYS-GMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI 375
                ++    V   +      +     L  +    ++  + +  G+   +   G +   
Sbjct: 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391

Query: 376 WFALWL 381
           +  + +
Sbjct: 392 FTLISV 397

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.8
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.55
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.46

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.2e-29  Score=261.80  Aligned_cols=290  Identities=16%  Similarity=0.237  Sum_probs=238.7

Q ss_pred             CchHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 009469          203 PKRWVVVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW  282 (534)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~  282 (534)
                      +.+|.++..+++.++..+++...++...|.+. ++|++..++|++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   99 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA   99 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            34688888888888888888888888888775 58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhc--cCChHHHHHHHHHHhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 009469          283 SVATVLTPVAA--RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF  360 (534)
Q Consensus       283 ~i~~~l~~~~~--~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~  360 (534)
                      +++.++++++.  ..+++.+++.|++.|++.+...++..++++|++|+++|++++++.+.+..+|.+++|.+++.+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  179 (447)
T d1pw4a_         100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  179 (447)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence            99998887753  1267889999999999999999999999999999999999999999999999999999998877654


Q ss_pred             -CchHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhHHHH-----hhhhCCCccccccccccHHHhhcchhHHHHHHHHH
Q 009469          361 -GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK-----RHILGGSISKEAVSVIPWKLILSKAPVWALIISHF  434 (534)
Q Consensus       361 -gw~~~f~i~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~  434 (534)
                       +|++.|++.+++.++..++.+...++.++.......++.     .........+........+..++++.++...+..+
T Consensus       180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (447)
T d1pw4a_         180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV  259 (447)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence             799999999888888777777776665443221111110     00001111112222344667788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 009469          435 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS  493 (534)
Q Consensus       435 ~~~~~~~~~~~~lp~~~~~~~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~~  493 (534)
                      +.....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||+++++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred             hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc
Confidence            99999999999999999998999999999999999999999999999999999987643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6e-18  Score=169.85  Aligned_cols=269  Identities=13%  Similarity=0.026  Sum_probs=173.1

Q ss_pred             HHHHHHhhhhHHHHhHHH-HHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhc
Q 009469          215 AFLLCNMDRVNMSIAILP-MSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA  293 (534)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~  293 (534)
                      ..+...+....+.+.+|. +.+++|+|..++|++.+++.++..++++++|+++||+|||++++++.++..++.+++.+..
T Consensus        15 ~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T d1pv7a_          15 FFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhh
Confidence            334444555566677776 5678999999999999999999999999999999999999999999998888887777665


Q ss_pred             cC--ChHHHHHHHHHHhhcccchhhHHHHHHhhhccC--CcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHH
Q 009469          294 RI--GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSF  369 (534)
Q Consensus       294 ~~--~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~--~~rg~~~gi~~~~~~lG~~igp~i~~~l~~~~gw~~~f~i~  369 (534)
                      ..  .....++.+++.+.+.+...........+..++  +++....+........+..++|.+++.+.+. +|++.++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  173 (417)
T d1pv7a_          95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLG  173 (417)
T ss_dssp             HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccch
Confidence            11  112234555666655555555544444444332  3455677778888889999999999988764 556666666


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhHHHHhhhhCCCccccccccccHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009469          370 GSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT  449 (534)
Q Consensus       370 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~lp~  449 (534)
                      .....+..++.+...++.+...+..+.++..        .+..........++++..+......+.............+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (417)
T d1pv7a_         174 SGCALILAVLLFFAKTDAPSSATVANAVGAN--------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN  245 (417)
T ss_dssp             HHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC--------CCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccchhhhhhhhhh--------cccccccccccccccccccchhhhhHHHHHHHHhhhccccc
Confidence            6666655555555555544433332222211        11111122333444555555444444444444444444343


Q ss_pred             HHHHh---hCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 009469          450 YYNQV---LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL  492 (534)
Q Consensus       450 ~~~~~---~g~s~~~~g~l~~~~~~~~iig~~i~g~l~dr~g~r~~  492 (534)
                      +....   .+.+....+.......++..++..+.+++.||+++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~  291 (417)
T d1pv7a_         246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH
T ss_pred             cccccccccccchhhhcccccccccccccchhhhhhhhcccccccc
Confidence            33321   22344556677777788889999999999999999864

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.7e-14  Score=144.11  Aligned_cols=154  Identities=8%  Similarity=0.023  Sum_probs=135.0

Q ss_pred             HhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHhhcccc
Q 009469          234 SKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGV  313 (534)
Q Consensus       234 ~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~l~~~~~~~~~~~ll~~r~l~Gig~g~  313 (534)
                      .++.+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++..+.+  +.+.+++..++.|++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~  328 (417)
T d1pv7a_         251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHHHHHHHH
Confidence            344455666778888899999999999999999999999999999999999999998888  888899999999999999


Q ss_pred             hhhHHHHHHhhhccCCcchhHHHHHH-HHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 009469          314 AMPAMNNMLSKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK  389 (534)
Q Consensus       314 ~~~~~~~~i~~~~~~~~rg~~~gi~~-~~~~lG~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~~~~~~~  389 (534)
                      ..+...+++.|.+|+++|++++++.. ....+|..++|.++|++.+.+||+++|++.+++.++..++.++..+++.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999999865 56779999999999999999999999999998888777777666654433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4.6e-13  Score=136.20  Aligned_cols=154  Identities=14%  Similarity=0.081  Sum_probs=120.8

Q ss_pred             HHHHHhhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH---HHHHHHHhhhccCChHHHHHHHHH
Q 009469          230 ILPMSKEFNWNSTTVGLIQSSFFWGYLLTQIVGGIWADKFGGKPVLGFGVIWW---SVATVLTPVAARIGLPFLLIMRAF  306 (534)
Q Consensus       230 ~~~~~~~~g~s~~~~g~i~s~~~l~~~~~~~~~G~l~Dr~Grr~~l~~g~~~~---~i~~~l~~~~~~~~~~~ll~~r~l  306 (534)
                      ..++.+.++.+..+.++..++..++..++.++.|++.||+++++......+..   .++.++.......+.+..+++-++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (447)
T d1pw4a_         273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV  352 (447)
T ss_dssp             HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred             hhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            34456778999999999999999999999999999999999876544333332   223333333333367777788888


Q ss_pred             HhhcccchhhHHHHHHhhhccCCcchhHHHHHHHHHHH-HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 009469          307 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK  383 (534)
Q Consensus       307 ~Gig~g~~~~~~~~~i~~~~~~~~rg~~~gi~~~~~~l-G~~igp~i~~~l~~~~gw~~~f~i~~~~~~i~~i~~~~~  383 (534)
                      .|++.+...+....++.|.+|++.|++++|+.+....+ |.+++|.+.+++.+.+||+..|++.++..++..++....
T Consensus       353 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  430 (447)
T d1pw4a_         353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  430 (447)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            89988888888999999999999999999999887776 567789999999999999999988777766665555544