Citrus Sinensis ID: 009471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRSFFSRK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccHHHHHHHHHHHHHHHHHHcHcHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHccHcHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHccc
Coil and Loop (DISEMBL)
mvedggngalaNIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEqipshlsdlsshpcfsknALCREQLQAVSKTLKEAIELAELCVKEKyegklrmqsDLDALsgkldlnlhdcglliktgvlgeatlplsvagsstdaeatthgNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAesgscenwlvsegvlpplirlvesgstvgkekATISLQRLSMSAEMARAIVghggvrplieicqtgdSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAyldgplpqesaVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTlpqncrevkrddksvpnlvqlldpspqntaKKYAVACLASLSPSARKLLERLERGRlrsffsrk
Flexible Loop (DISEMBL)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLtatsprireKTVTVICSLAESGSCENWLVSEGVLPPLIRLVesgstvgkekaTISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLtasnenlrrsVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISslvtlpqncrevkrddksvpnlvqlldpspqnTAKKYAVACLASLSPSARKLLErlergrlrsffsrk
Low Complexity Region (SEG)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKagslgaqqaaasalCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSArkllerlergrlrsffsrK
Disordered region (IsUnstruct)
***********NIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVA**************RELLARLQIGHLEAKHKALDSLVEAMK*DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC**************************KYAVACLAS************************
Disordered Region (DISOPRED)
**************SADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD***********LCREQLQAVSKTLKEAIELA***************SDLDALSGKLDLNLHDCGLLIKTGVLGEATLPL**********ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP*****AKKYAVACLASLSPSARKLLERLERGRLRSFFSRK
Disordered Region (DISEMBL)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSV***********HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSL**********CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRSFFSRK
Disordered Region (DISPRO)
******NGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLP********DAE**THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRSFFS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRSFFSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q8GWV5	760	U-box domain-containing p	no	no	0.473	0.332	0.283	1e-14
O22193	826	U-box domain-containing p	no	no	0.507	0.328	0.264	1e-13
Q6CX49	579	Vacuolar protein 8 OS=Klu	yes	no	0.537	0.495	0.239	3e-09
Q9SNC6	660	U-box domain-containing p	no	no	0.546	0.442	0.250	7e-09
P39968	578	Vacuolar protein 8 OS=Sac	yes	no	0.398	0.368	0.264	4e-08
Q5VRH9	611	U-box domain-containing p	no	no	0.380	0.332	0.278	4e-08
Q9FL17	550	U-box domain-containing p	no	no	0.329	0.32	0.242	1e-07
Q6FJV1	582	Vacuolar protein 8 OS=Can	yes	no	0.586	0.537	0.236	1e-07
Q5EFZ4	556	Vacuolar protein 8 OS=Kom	yes	no	0.346	0.332	0.268	4e-07
Q757R0	568	Vacuolar protein 8 OS=Ash	yes	no	0.691	0.649	0.237	1e-06

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 129/268 (48%), Gaps = 15/268 (5%)

Query: 206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
           TA +  IR  T+  I +    G C       G + PL+ L+ S   + +E A  +L  LS
Sbjct: 490 TAAAAEIRHLTINSIENRVHIGRC-------GAITPLLSLLYSEEKLTQEHAVTALLNLS 542

Query: 266 MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVM 324
           +S      IV  G + PL+ +  TG+  ++  +A +L ++S +   R+ + +    +  +
Sbjct: 543 ISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQAL 602

Query: 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ-ESAVGA 383
           + LL  G   G K+ AA  L NL+ +++N  R +V    ++ L+  LD  L   + AV  
Sbjct: 603 VNLLGKGTFRGKKD-AASALFNLSITHDNKAR-IVQAKAVKYLVELLDPDLEMVDKAVAL 660

Query: 384 LRNL--VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEA 440
           L NL  VG   ++ ++  G  P LV  +  GS   ++ AAS L ++C  S +   LV + 
Sbjct: 661 LANLSAVGE-GRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQE 719

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSL 468
           G  P L+ L ++     +E A Q +S  
Sbjct: 720 GAIPPLVALSQSGTQRAKEKAQQLLSHF 747

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 43/314 (13%)

Query: 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216
           ++L+  L+   L+ + +A   L    K +  N + +     I  LV+LL +T    +E  
Sbjct: 544 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 603

Query: 217 VTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276
           VT + +L+ + + +  +   G + PLI ++E+GS+  KE +  +L  LS+  E    I  
Sbjct: 604 VTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQ 663

Query: 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGS 336
            G + PL+++   G    +  AA  L N+S   E + M+ + G V  +I L+D     G 
Sbjct: 664 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAA--GM 721

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVL 396
            + A   L NL         + + EG                      RN +G   QE  
Sbjct: 722 VDKAVAVLANL---------ATIPEG----------------------RNAIG---QE-- 745

Query: 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN 455
              G  P LV V++ GS   ++ AA+AL ++ T S     +V + G  P L+ L ++   
Sbjct: 746 ---GGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTP 802

Query: 456 SVREVAAQAISSLV 469
             RE  AQA+ S  
Sbjct: 803 RARE-KAQALLSYF 815

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6CX49|VAC8_KLULA Vacuolar protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=VAC8 PE=3 SV=3

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
           A  E  +  ++ + R  +  ++ LLT   P+IR  +   + +LA +   +  +V  G L 
Sbjct: 72  AFAEITEKYVSPVSRDVLEPILMLLTNPDPQIRIASCAALGNLAVNNENKLLIVEMGGLE 131

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLI  ++S +   +  A   +  L+   +    I   G + PL ++ ++ +   Q  A  
Sbjct: 132 PLIEQMKSDNVEVQCNAVGCITNLATQDDNKIEIAQSGALVPLTKLARSSNIRVQRNATG 191

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
            L N++   E R+ L + G V V++ LL   +    + Y    L N+ A +E+ RR +  
Sbjct: 192 ALLNMTHSGENRKELVDAGAVPVLVSLLS-SMDADVQYYCTTALSNI-AVDESNRRYLSK 249

Query: 361 EGG--IRSLLAYLDGPLPQE--SAVGALRNLVGSVSQEV-LISLGFFPRLVHVLKAGSLG 415
                +  L++ ++   P+    A  ALRNL    + ++ ++  G  P LV ++++ SL 
Sbjct: 250 HAPKLVTKLVSLMNSTSPRVKCQATLALRNLASDTNYQLEIVRAGGLPDLVQLIQSDSLP 309

Query: 416 AQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471
              A+ + +  +      + L+ +AG  P L+KLL+ + +   E+   A+S+L  L
Sbjct: 310 LVLASVACIRNISIHPLNEGLIVDAGFLPPLVKLLDYQES--EEIQCHAVSTLRNL 363

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 11/303 (3%)

Query: 138 PLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSN 197
           P  V+  S+ AEA       +L+ RL  G+ E +  A   +    K +  N +A+     
Sbjct: 339 PRKVSSFSSPAEAN---KIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGA 395

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           I  LV LL+    RI+E +VT + +L+   + +  +VS G +P ++++++ GS   +E A
Sbjct: 396 IPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENA 455

Query: 258 TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE 317
             +L  LS+  E    I   G + PL+ +   G    +  AA  L N+      +     
Sbjct: 456 AATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIR 515

Query: 318 EGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL--DGP 374
            G++  + +LL + G   G  + A   L  L++  E  +  + S   + SL+ ++    P
Sbjct: 516 AGVIPTLTRLLTEPGS--GMVDEALAILAILSSHPEG-KAIIGSSDAVPSLVEFIRTGSP 572

Query: 375 LPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432
             +E+A   L +L     Q ++ +  LG    L+ +   G+   ++ AA  L R+   AE
Sbjct: 573 RNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAE 632

Query: 433 MKK 435
            +K
Sbjct: 633 QQK 635

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P39968|VAC8_YEAST Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC8 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 10/223 (4%)

Query: 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226
           H+  +  A  +L+  M   E+N   ++    +  LV LL++T P ++    T + ++A  
Sbjct: 180 HIRVQRNATGALLN-MTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVD 238

Query: 227 GSCENWLVSEG--VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284
            +    L      ++  L+ L++S S+  K +AT++L+ L+        IV  GG+  L+
Sbjct: 239 EANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLV 298

Query: 285 EICQTGDSVSQ--AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE 342
           ++ Q+ DS+    A+ AC ++NIS  P    ++ + G +  +++LLD       + +A  
Sbjct: 299 KLIQS-DSIPLVLASVAC-IRNISIHPLNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVS 356

Query: 343 CLQNLTASNENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGA 383
            L+NL AS+E  R+     G +     LA LD P+  +S + A
Sbjct: 357 TLRNLAASSEKNRKEFFESGAVEKCKELA-LDSPVSVQSEISA 398

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 5/208 (2%)

Query: 237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQA 296
           G +P L+ L+ S     +E A  +L  LS+      +IV    +  ++E+ +TG   ++ 
Sbjct: 365 GAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRE 424

Query: 297 AAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356
            AA TL ++S V E +  +   G +  +I LL  G   G K+ AA  + NL     N  R
Sbjct: 425 NAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKD-AATAIFNLCIYQGNKVR 483

Query: 357 SVVSEGGIRSLLAYLDGPLPQ--ESAVGALRNLVGSVSQEVLISLG-FFPRLVHVLKAGS 413
           +V + G +  L+ +L  P     + A+  L  L G+   +++I+     P LV V+K GS
Sbjct: 484 AVKA-GIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGS 542

Query: 414 LGAQQAAASALCRVCTSAEMKKLVGEAG 441
              ++ AA+ L  +C++   + L  +A 
Sbjct: 543 PRNRENAAAILWLLCSADTEQTLAAKAA 570

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 91/177 (51%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           LL +L+   +    +AL S+    + DE + +++     I+AL  L+ +    ++     
Sbjct: 233 LLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKSLIVSRYATVQVNVTA 292

Query: 219 VICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG 278
           V+ +L+   S +  +V  G++PPLI +++ GS   +E +   +  L++  E   AI   G
Sbjct: 293 VLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVLG 352

Query: 279 GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLG 335
           G+ PL+ + + G  +++  +A  L ++S V   R  L + G V +++ ++  G ++G
Sbjct: 353 GLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQMLLGMVSLGQMIG 409

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6FJV1|VAC8_CANGA Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VAC8 PE=3 SV=3

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 30/343 (8%)

Query: 155 NTRELLARLQIGHLEAKH----------KALDSLVE------------AMKEDEKNVLAV 192
           N RE +  L +G+LE K           KAL +LV             A  E  +  +  
Sbjct: 23  NEREAVTLL-LGYLEDKDRLDFYSGGPLKALTTLVYSDNLNLQRSAALAFAEVTEKYVRQ 81

Query: 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTV 252
           + R  +  ++ LL +  P+I+      + +LA +   +  +V  G L PLI  +   +  
Sbjct: 82  VSRDVLEPILILLQSQDPQIQVAACAALGNLAVNNENKLLIVDMGGLEPLINQMMGTNVE 141

Query: 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312
            +  A   +  L+   +    I   G + PL ++ ++     Q  A   L N++   E R
Sbjct: 142 VQCNAVGCITNLATRDDNKHKIATSGALVPLTKLAKSKHIRVQRNATGALLNMTHSEENR 201

Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS-LLAYL 371
           + L   G V V++ LL        + Y    L N+     N ++   +E  + S L++ +
Sbjct: 202 RELVNAGAVPVLVSLLSSND-PDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLM 260

Query: 372 DGPLPQE--SAVGALRNLVGSVSQEV-LISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428
           D P  +    A  ALRNL    S ++ ++  G  P LV+++++ S+    A+ + +  + 
Sbjct: 261 DSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVNLIQSESVPLILASVACIRNIS 320

Query: 429 TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL 471
                + L+ +AG  P L+KLL+ + +   E+   A+S+L  L
Sbjct: 321 IHPLNEGLIVDAGFLPPLVKLLDYRDS--EEIQCHAVSTLRNL 361

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3

 Score = 56.6 bits (135), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 5/190 (2%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSE-GVLPPLIRLVESGSTVGKE 255
           +  LVQLL++T P ++    T + ++A + G+ +    +E  ++  L++L++S S   + 
Sbjct: 211 VPILVQLLSSTDPDVQYYCTTALSNIAVDEGNRKKLASTEPKLISQLVQLMDSTSPRVQC 270

Query: 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQM 314
           +AT++L+ L+  A     IV  GG+  L+ +   T   +  AA AC ++NIS  P    +
Sbjct: 271 QATLALRNLASDANYQLEIVRAGGLPNLVTLLNSTHQPLVLAAVAC-IRNISIHPLNEAL 329

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA-YLDG 373
           + + G +  ++ LLD    +  + +A   L+NL AS+E  R +++  G +       L+ 
Sbjct: 330 IIDAGFLKPLVSLLDYNDNVEIQCHAVSTLRNLAASSERNRLALLESGAVEKCEKLVLNS 389

Query: 374 PLPQESAVGA 383
           P+  +S + A
Sbjct: 390 PISVQSEISA 399

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Pichia pastoris (taxid: 4922)

>sp|Q757R0|VAC8_ASHGO Vacuolar protein 8 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VAC8 PE=3 SV=3

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 172/409 (42%), Gaps = 40/409 (9%)

Query: 155 NTRELLARLQIGHLEAKH----------KALDSLVE------------AMKEDEKNVLAV 192
           N RE +  L +G+LE K           KAL +LV             A  E  +  +  
Sbjct: 23  NEREAVTSL-LGYLEDKDNYDFYSGGPLKALTTLVYSDNLNLQRSAALAFAEITEKYVRP 81

Query: 193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTV 252
           + R  +  ++ LL +  P+I+      + +LA +   +  +V  G L PLI  ++S +  
Sbjct: 82  VDREVLEPILILLQSHDPQIQIAACAALGNLAVNNENKILIVEMGGLEPLIEQMKSNNVE 141

Query: 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312
            +  A   +  L+   +    I   G + PL ++ ++ +   Q  A   L N++   E R
Sbjct: 142 VQCNAVGCITNLATQDDNKAKIAHSGALVPLTKLAKSKNIRVQRNATGALLNMTHSGENR 201

Query: 313 QMLAEEGIVSVMIKLL---DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA 369
           + L + G V V++ LL   D  +    + Y    L N+     N R+   +E  + S L 
Sbjct: 202 KELVDAGAVPVLVSLLSSSDADV----QYYCTTALSNIAVDESNRRKLSQTEPRLVSKLV 257

Query: 370 YL-DGPLPQE--SAVGALRNLVGSVSQEV-LISLGFFPRLVHVLKAGSLGAQQAAASALC 425
            L D P  +    A  ALRNL      ++ ++  G    LV +++  S+    A+ + + 
Sbjct: 258 VLTDSPSARVKCQATLALRNLASDTGYQLEIVRAGGLSHLVKLIQCNSMPLVLASVACIR 317

Query: 426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL---PQNCREVKRDD 482
            +      + L+ +AG    L+KLL+   N   E+   A+S+L  L    +  R+   + 
Sbjct: 318 NISIHPLNEGLIVDAGFLKPLVKLLDYNDN--EEIQCHAVSTLRNLAASSEKNRQEFFES 375

Query: 483 KSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRSFF 531
            +V    QL   SP +   + + AC A L+ +    LE L+   L +  
Sbjct: 376 GAVEKCKQLALVSPISVQSEIS-ACFAILALADNSKLELLDANILEALI 423

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
255541460	561	ubiquitin-protein ligase, putative [Rici	1.0	0.951	0.830	0.0
224130144	560	predicted protein [Populus trichocarpa]	1.0	0.953	0.828	0.0
225453748	560	PREDICTED: uncharacterized protein LOC10	1.0	0.953	0.812	0.0
147822343	560	hypothetical protein VITISV_031028 [Viti	1.0	0.953	0.812	0.0
224063965	560	predicted protein [Populus trichocarpa]	1.0	0.953	0.812	0.0
356506300	565	PREDICTED: U-box domain-containing prote	0.975	0.922	0.808	0.0
353685488	556	armadillo [Phaseolus vulgaris]	0.992	0.953	0.791	0.0
356522654	565	PREDICTED: vacuolar protein 8-like [Glyc	0.998	0.943	0.779	0.0
356532060	559	PREDICTED: vacuolar protein 8-like [Glyc	0.998	0.953	0.787	0.0
449454484	565	PREDICTED: armadillo repeat-containing p	1.0	0.945	0.755	0.0

>gi|255541460|ref|XP_002511794.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223548974|gb|EEF50463.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/561 (83%), Positives = 497/561 (88%), Gaps = 27/561 (4%)

Query: 1   MVEDGGNGALA-NIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLS 59
           MVED G   +  +IQS ++WL HAQELVP+A++KAR++KGFPGRWKMIISKLEQIPSHLS
Sbjct: 1   MVEDRGKAVIEEDIQSVEDWLSHAQELVPLALDKAREVKGFPGRWKMIISKLEQIPSHLS 60

Query: 60  DLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLN 119
           DLSSHPCFSKNALC+EQLQAVSKTLKEAIELAELCV EKYEGKLRMQSDLDALSGKLDLN
Sbjct: 61  DLSSHPCFSKNALCKEQLQAVSKTLKEAIELAELCVGEKYEGKLRMQSDLDALSGKLDLN 120

Query: 120 LHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLV 179
           L DCGLLIKTGVLGE TLPL+VAGSST+ EA  H N REL ARLQIGHLEAKHKALDSLV
Sbjct: 121 LRDCGLLIKTGVLGEVTLPLAVAGSSTEPEAAIHSNIRELFARLQIGHLEAKHKALDSLV 180

Query: 180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239
           E MKEDEK VLAV+GRSNIAALVQLLTATSPR+REKTVTVICSLAESGSCENWLVSEGVL
Sbjct: 181 EVMKEDEKTVLAVLGRSNIAALVQLLTATSPRMREKTVTVICSLAESGSCENWLVSEGVL 240

Query: 240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299
           PPLIRLVESGS VGKEKATISLQRLSMS E ARAIVGHGGVRPLIEIC+TGDSVSQAAAA
Sbjct: 241 PPLIRLVESGSIVGKEKATISLQRLSMSTETARAIVGHGGVRPLIEICRTGDSVSQAAAA 300

Query: 300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
           CTLKNIS VPEVRQ LAEEGIV +MI LLDCGILLGSKEYAAECLQNLTA+N+NLRR V+
Sbjct: 301 CTLKNISVVPEVRQNLAEEGIVKIMINLLDCGILLGSKEYAAECLQNLTATNDNLRRIVI 360

Query: 360 SEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419
           SEGGIRSLLAYLDGPLPQESAVGALRNLV SVS E L++L F PRLVHVLK+GSLGAQQA
Sbjct: 361 SEGGIRSLLAYLDGPLPQESAVGALRNLVSSVSMEQLVTLNFLPRLVHVLKSGSLGAQQA 420

Query: 420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK 479
           AASA+CRVC+S EMKKLVGEAGC PLLIKLLEAK NSVRE +AQAISSLV+LPQNCREVK
Sbjct: 421 AASAICRVCSSTEMKKLVGEAGCIPLLIKLLEAKSNSVREASAQAISSLVSLPQNCREVK 480

Query: 480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------P 513
           ++DKSVPNLVQLLDPSPQNTAKKYAV+CLASLS                          P
Sbjct: 481 KNDKSVPNLVQLLDPSPQNTAKKYAVSCLASLSSSKKCKKLMISYGAIGYLKKLTEMDIP 540

Query: 514 SARKLLERLERGRLRSFFSRK 534
            A+KLLERLERG+LRS FSRK
Sbjct: 541 GAKKLLERLERGKLRSLFSRK 561

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130144|ref|XP_002320763.1| predicted protein [Populus trichocarpa] gi|222861536|gb|EEE99078.1| predicted protein [Populus trichocarpa]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/560 (82%), Positives = 495/560 (88%), Gaps = 26/560 (4%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVED G   L +IQS ++WL HAQELVPVA++KAR++KGFPGRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDRGKEVLVDIQSVEDWLSHAQELVPVALDKAREVKGFPGRWKMIISKLEQIPSRLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCF KNALC+EQLQAVSKTLKEAIELA LC+ E Y GKLRMQSDLDALSGKLDLNL
Sbjct: 61  LSSHPCFFKNALCKEQLQAVSKTLKEAIELAGLCMGENYGGKLRMQSDLDALSGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEATLPL+VA SST+ EA  H NTRELLARLQIGHLEAKH+ALD+LVE
Sbjct: 121 RDCGLLIKTGVLGEATLPLAVASSSTEPEAAIHSNTRELLARLQIGHLEAKHRALDTLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEK VLAV+GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG+LP
Sbjct: 181 VMKEDEKAVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGLLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGSTVGKEKATISLQRLSMSAE ARAIVGHGG+RPLIEIC+TGDSVSQAAAAC
Sbjct: 241 PLIRLVESGSTVGKEKATISLQRLSMSAETARAIVGHGGIRPLIEICRTGDSVSQAAAAC 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ LAEEGIV VMI LLDCGILLGSKEYAAECLQNLTASN+NL+R+V+S
Sbjct: 301 TLKNISAVPEVRQNLAEEGIVKVMINLLDCGILLGSKEYAAECLQNLTASNDNLKRAVIS 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGGIRSLL YLDGPLPQESAVGALRNLV SVS E+LIS GF PRLVHVLK+GSLGAQQAA
Sbjct: 361 EGGIRSLLVYLDGPLPQESAVGALRNLVSSVSTEMLISYGFLPRLVHVLKSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           ASA+CRVCTSAEMKKLVGEAGC PLLIKLLEAK NSVREV+AQAISSLV+L QN R VKR
Sbjct: 421 ASAICRVCTSAEMKKLVGEAGCIPLLIKLLEAKSNSVREVSAQAISSLVSLSQNRRVVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------PS 514
           DDKSVPNLVQLLDP PQNTAKKYAVA LASL+                          P 
Sbjct: 481 DDKSVPNLVQLLDPIPQNTAKKYAVASLASLASTKKCKKLMISYGAIGYLKKLTEMDIPG 540

Query: 515 ARKLLERLERGRLRSFFSRK 534
           ++KLLERLERG+LRS FS+K
Sbjct: 541 SKKLLERLERGKLRSLFSKK 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453748|ref|XP_002269981.1| PREDICTED: uncharacterized protein LOC100250612 [Vitis vinifera]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/560 (81%), Positives = 492/560 (87%), Gaps = 26/560 (4%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDGG+  LA+ QSAD+ L  AQELVPVA++ +R++KGF GRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDGGDEFLADNQSADKLLARAQELVPVALDNSREVKGFLGRWKMIISKLEQIPSCLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKN LC+EQLQAV +TLKE IELAELC+KEKYEGKLRMQSDLD L GKLDLNL
Sbjct: 61  LSSHPCFSKNTLCKEQLQAVLRTLKETIELAELCIKEKYEGKLRMQSDLDGLIGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLL+KTGVLGEA +PL+VAGSS + EA TH N RE LARLQIGHLEAKHKALDSLVE
Sbjct: 121 RDCGLLVKTGVLGEAMMPLTVAGSSAEPEAGTHSNIREFLARLQIGHLEAKHKALDSLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEKNVLAV+GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP
Sbjct: 181 VMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGS VGKEKATISLQRLSMSAE AR+IVGHGGVRPLIEICQT DSVSQAAAA 
Sbjct: 241 PLIRLVESGSAVGKEKATISLQRLSMSAETARSIVGHGGVRPLIEICQTSDSVSQAAAAS 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKN+S VPEVRQ LAEEGI+ VMI LLDCGILLGSKEYAAECLQNLTASNENLRRSV++
Sbjct: 301 TLKNLSVVPEVRQTLAEEGIIKVMINLLDCGILLGSKEYAAECLQNLTASNENLRRSVIT 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSVS EVL+SLGF PRLVHVLK+GSLGAQQAA
Sbjct: 361 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVSMEVLVSLGFLPRLVHVLKSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           ASA+CRVC+S EMKKLVGEAGC PLL+K+LEAK NSVREVA+QA+S LV + QNC+EVKR
Sbjct: 421 ASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKTNSVREVASQALSGLVAISQNCKEVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------PS 514
            DKSVPNLVQLLDPSPQNTAKKYAV+CLA+LS                          P 
Sbjct: 481 GDKSVPNLVQLLDPSPQNTAKKYAVSCLAALSSSKKCKKLMISYGAIGYLKKLNEMDIPG 540

Query: 515 ARKLLERLERGRLRSFFSRK 534
           A+KLLERLERG+LRS F+RK
Sbjct: 541 AKKLLERLERGKLRSLFTRK 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822343|emb|CAN66207.1| hypothetical protein VITISV_031028 [Vitis vinifera]

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/560 (81%), Positives = 491/560 (87%), Gaps = 26/560 (4%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDGG+  LA+ QSAD+ L  AQELVPVA++  R++KGF GRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDGGDEFLADNQSADKLLARAQELVPVALDNXREVKGFLGRWKMIISKLEQIPSCLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKN LC+EQLQAV +TLKE IELAELC+KEKYEGKLRMQSDLD L GKLDLNL
Sbjct: 61  LSSHPCFSKNTLCKEQLQAVLRTLKETIELAELCIKEKYEGKLRMQSDLDGLIGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLL+KTGVLGEA +PL+VAGSS + EA TH N RE LARLQIGHLEAKHKALDSLVE
Sbjct: 121 RDCGLLVKTGVLGEAMMPLTVAGSSAEPEAGTHSNIREFLARLQIGHLEAKHKALDSLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEKNVLAV+GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP
Sbjct: 181 VMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGS VGKEKATISLQRLSMSAE AR+IVGHGGVRPLIEICQT DSVSQAAAA 
Sbjct: 241 PLIRLVESGSAVGKEKATISLQRLSMSAETARSIVGHGGVRPLIEICQTSDSVSQAAAAS 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKN+S VPEVRQ LAEEGI+ VMI LLDCGILLGSKEYAAECLQNLTASNENLRRSV++
Sbjct: 301 TLKNLSVVPEVRQTLAEEGIIKVMINLLDCGILLGSKEYAAECLQNLTASNENLRRSVIT 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSVS EVL+SLGF PRLVHVLK+GSLGAQQAA
Sbjct: 361 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVSMEVLVSLGFLPRLVHVLKSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           ASA+CRVC+S EMKKLVGEAGC PLL+K+LEAK NSVREVA+QA+S LV + QNC+EVKR
Sbjct: 421 ASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKTNSVREVASQALSXLVAISQNCKEVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------PS 514
            DKSVPNLVQLLDPSPQNTAKKYAV+CLA+LS                          P 
Sbjct: 481 GDKSVPNLVQLLDPSPQNTAKKYAVSCLAALSSSKKCKKLMISYGAIGYLKKLNEMDIPG 540

Query: 515 ARKLLERLERGRLRSFFSRK 534
           A+KLLERLERG+LRS F+RK
Sbjct: 541 AKKLLERLERGKLRSLFTRK 560

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063965|ref|XP_002301324.1| predicted protein [Populus trichocarpa] gi|222843050|gb|EEE80597.1| predicted protein [Populus trichocarpa]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/560 (81%), Positives = 490/560 (87%), Gaps = 26/560 (4%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVED G   + +IQS ++WL HAQELVPVAV+KAR++KGFPGRWKMIISKLEQIPS LSD
Sbjct: 1   MVEDRGKEVVVDIQSVEDWLCHAQELVPVAVDKAREVKGFPGRWKMIISKLEQIPSRLSD 60

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKN+LC+EQLQAVSKTLKEAIELA LC+ E Y GKLR QSDLDALSGKLDLNL
Sbjct: 61  LSSHPCFSKNSLCKEQLQAVSKTLKEAIELAILCMGENYCGKLRTQSDLDALSGKLDLNL 120

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEAT+P +VAGSST+ EA  H NTRELLARLQIGHLEAKH+ALD+LVE
Sbjct: 121 RDCGLLIKTGVLGEATMPSAVAGSSTEPEAAIHSNTRELLARLQIGHLEAKHRALDTLVE 180

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
            MKEDEK VLAVMGRSNIAALVQLLTATSP IREKTVT ICSLAESGSCENWLVSEGVLP
Sbjct: 181 VMKEDEKTVLAVMGRSNIAALVQLLTATSPCIREKTVTAICSLAESGSCENWLVSEGVLP 240

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGSTVGKEKATISLQRLSMS E ARAIVGHGGVRPLIEIC+TGDSVSQAAAAC
Sbjct: 241 PLIRLVESGSTVGKEKATISLQRLSMSTETARAIVGHGGVRPLIEICRTGDSVSQAAAAC 300

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ LAEEGIV VMI LLDCGILLGSKEYAAECLQNLTASN+NL+R+V+S
Sbjct: 301 TLKNISAVPEVRQDLAEEGIVKVMINLLDCGILLGSKEYAAECLQNLTASNDNLKRAVIS 360

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGGIRSLL YLDGPLPQESAVGALRNLV S+S E+L+S  F PRLVHVL++GSLGAQQAA
Sbjct: 361 EGGIRSLLVYLDGPLPQESAVGALRNLVSSISMEMLVSYCFLPRLVHVLRSGSLGAQQAA 420

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           A+A+CRVCTSA+MKKLVGEAGC PLLIKLLEAK NSVREV+AQAISSLV+L  N REVKR
Sbjct: 421 ATAICRVCTSADMKKLVGEAGCIPLLIKLLEAKSNSVREVSAQAISSLVSLSHNRREVKR 480

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------PS 514
           DDKSVPNLVQLLDPSPQNTAKKYAVA LASL+                          P 
Sbjct: 481 DDKSVPNLVQLLDPSPQNTAKKYAVASLASLASSKKRKRLMISYGAIGYLKKLTEMDIPG 540

Query: 515 ARKLLERLERGRLRSFFSRK 534
           A+KLLERLE+ +LRS F +K
Sbjct: 541 AKKLLERLEKRKLRSLFGKK 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506300|ref|XP_003521923.1| PREDICTED: U-box domain-containing protein 12-like [Glycine max]

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/547 (80%), Positives = 478/547 (87%), Gaps = 26/547 (4%)

Query: 14  QSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALC 73
           +S ++WLLHAQELVPVA+  AR++KGFPGRWKMIIS LEQIPS LSDLSSHPCFSKNALC
Sbjct: 19  RSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISNLEQIPSRLSDLSSHPCFSKNALC 78

Query: 74  REQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLG 133
           +EQLQAVSKTLKEA+ELAELCVKEKYEGKLRMQSDLDAL GKLDLNL DCGLLIKTGVLG
Sbjct: 79  KEQLQAVSKTLKEAVELAELCVKEKYEGKLRMQSDLDALIGKLDLNLKDCGLLIKTGVLG 138

Query: 134 EATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM 193
           EATLPL+V GS  +++  TH N RELLARLQIGHLEAKHKALD L + MKEDEKNVLAV 
Sbjct: 139 EATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVF 198

Query: 194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVG 253
           GRSNI+ALVQLLTATSPRIREKTVTVICSL ESGSCE WLVSEGVLPPLIRLVESGS VG
Sbjct: 199 GRSNISALVQLLTATSPRIREKTVTVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVG 258

Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313
           KEKAT+SLQRLSMSAE  RAIVGHGGVRPLIEICQ+GDSVSQAAAACTL N+SAVPEVRQ
Sbjct: 259 KEKATLSLQRLSMSAETTRAIVGHGGVRPLIEICQSGDSVSQAAAACTLTNVSAVPEVRQ 318

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373
            LAEEGIV VMI LL+CGILLGSKEYAAECLQNLT SNE LR+SV+SEGG+RSLLAYLDG
Sbjct: 319 ALAEEGIVRVMISLLNCGILLGSKEYAAECLQNLTLSNEYLRKSVISEGGVRSLLAYLDG 378

Query: 374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEM 433
           PLPQESAVGAL+NL+GSVS+E L+SLG  P LVHVLK+GSLGAQQAAAS +CRVC+S EM
Sbjct: 379 PLPQESAVGALKNLIGSVSEETLVSLGLVPCLVHVLKSGSLGAQQAAASIICRVCSSMEM 438

Query: 434 KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLD 493
           KK+VGEAGC PLLIK+LEAK N+ REVAAQAISSL+ L QN REVK+DDKSVPNLVQLLD
Sbjct: 439 KKIVGEAGCIPLLIKMLEAKANNAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLD 498

Query: 494 PSPQNTAKKYAVACLASLSPS--------------------------ARKLLERLERGRL 527
           PSPQNTAKKYAV+CL SLSPS                          A+KLLERLERG+L
Sbjct: 499 PSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKL 558

Query: 528 RSFFSRK 534
           RS FSRK
Sbjct: 559 RSLFSRK 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353685488|gb|AER13165.1| armadillo [Phaseolus vulgaris]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/560 (79%), Positives = 487/560 (86%), Gaps = 30/560 (5%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDG      + +S +EWLLHAQELVPV +EKAR++KGF GRWKMII+KLEQIPS LSD
Sbjct: 1   MVEDGDA---VDARSTEEWLLHAQELVPVVLEKAREVKGFAGRWKMIIAKLEQIPSRLSD 57

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKNALC+EQLQAVSKTL EAIELAELC+KEKYEGKLRMQSDLDAL+GKLDLNL
Sbjct: 58  LSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCMKEKYEGKLRMQSDLDALTGKLDLNL 117

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEATLPL+V+ S  +++   H N RELLARLQIGHLEAKH+ALDS+VE
Sbjct: 118 RDCGLLIKTGVLGEATLPLAVSSSVAESDVAAH-NIRELLARLQIGHLEAKHQALDSVVE 176

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
           AMKEDEK+VLA +GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP
Sbjct: 177 AMKEDEKSVLAALGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 236

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGS VGKEKATISLQRLSMSAE AR IVGHGGV PL+E+CQ GDSVSQAAAAC
Sbjct: 237 PLIRLVESGSAVGKEKATISLQRLSMSAETAREIVGHGGVPPLVELCQIGDSVSQAAAAC 296

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ L+EEGIV +MI LL+CGILLGSKE+AAECLQNLTASNENLRRSV+S
Sbjct: 297 TLKNISAVPEVRQTLSEEGIVRIMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVIS 356

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSV +E L+SLG  PRLVHVLK+GSLGAQQAA
Sbjct: 357 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLVPRLVHVLKSGSLGAQQAA 416

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
            +A+CRVC+S +MKK+VGEAGC PLL+K+LEAK NS REVAAQAI+SL+ + QN REVK+
Sbjct: 417 VAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSAREVAAQAIASLIVVSQNTREVKK 476

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------PS 514
           DDKSVPNLVQLLDPSPQNTAKKYAV CL SLS                          P 
Sbjct: 477 DDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPG 536

Query: 515 ARKLLERLERGRLRSFFSRK 534
           A+KL ERLERG+LRS FS+K
Sbjct: 537 AKKLHERLERGKLRSLFSKK 556

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522654|ref|XP_003529961.1| PREDICTED: vacuolar protein 8-like [Glycine max]

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/559 (77%), Positives = 481/559 (86%), Gaps = 26/559 (4%)

Query: 2   VEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDL 61
           V    + A    +S ++WLLHAQELVPVA+  AR++KGFPGRWKMIISKLEQIP  LSDL
Sbjct: 7   VSKDKDAAAFEARSTEDWLLHAQELVPVALANAREVKGFPGRWKMIISKLEQIPLRLSDL 66

Query: 62  SSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLH 121
           SSHPCFS+NALC+EQLQAVSKTL+EAIELAELCVKEKYEGKLRMQSDLDAL GKLDLNL 
Sbjct: 67  SSHPCFSRNALCKEQLQAVSKTLREAIELAELCVKEKYEGKLRMQSDLDALIGKLDLNLK 126

Query: 122 DCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEA 181
           DCGLLIKTGVLGEA+LPL+V GS  +++  TH N RELLARLQIGHLEAKHKALD L + 
Sbjct: 127 DCGLLIKTGVLGEASLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDV 186

Query: 182 MKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPP 241
           MKEDEKNVLA+ GRSN+AALVQLLTATSPRIREKTV+VICSL ESGSCE WLVSEGVLPP
Sbjct: 187 MKEDEKNVLAIFGRSNVAALVQLLTATSPRIREKTVSVICSLVESGSCEKWLVSEGVLPP 246

Query: 242 LIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT 301
           LIRLVESGS VGKEKAT+SLQRLSMSAE  RAIVGHGGV+PLIE+CQ GDSVSQAAAACT
Sbjct: 247 LIRLVESGSAVGKEKATVSLQRLSMSAETTRAIVGHGGVQPLIELCQNGDSVSQAAAACT 306

Query: 302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361
           L N+SAVPEVRQ LAEEGIV VMI LL+ GILLGSKEYAAECLQNLT+SNE+LR+SVVSE
Sbjct: 307 LTNVSAVPEVRQALAEEGIVRVMINLLNYGILLGSKEYAAECLQNLTSSNEHLRKSVVSE 366

Query: 362 GGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421
           GG+RSLLAYLDGPLPQESAVGAL+NLVGSVS+E L+SLG  P LVHVLK+GSLGAQQA+A
Sbjct: 367 GGVRSLLAYLDGPLPQESAVGALKNLVGSVSEETLVSLGLVPCLVHVLKSGSLGAQQASA 426

Query: 422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD 481
           S +CRVC+S EMKK+VGEAGC PLLIK+L+AK N+ REVAAQAISSL+ L QN REVK+D
Sbjct: 427 SIICRVCSSMEMKKIVGEAGCIPLLIKMLDAKSNTAREVAAQAISSLMVLSQNRREVKKD 486

Query: 482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS--------------------------A 515
           DKSVPNLVQLLDPSPQNTAKKYAV+CL SLSPS                          A
Sbjct: 487 DKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIVGA 546

Query: 516 RKLLERLERGRLRSFFSRK 534
           +KLL+RLERG+LRS FSRK
Sbjct: 547 KKLLQRLERGKLRSLFSRK 565

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532060|ref|XP_003534592.1| PREDICTED: vacuolar protein 8-like [Glycine max]

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/560 (78%), Positives = 490/560 (87%), Gaps = 27/560 (4%)

Query: 1   MVEDGGNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSD 60
           MVEDG   A+ + +S ++WLLHAQELVPV ++KAR++KGF GRWKMI++KLEQIP  LSD
Sbjct: 1   MVEDGDEVAV-DARSTEDWLLHAQELVPVVIDKAREVKGFAGRWKMIVAKLEQIPLRLSD 59

Query: 61  LSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNL 120
           LSSHPCFSKNALC+EQLQAVSKTL EAIELAELC+KEKYEGKLRMQSDLD+LSGKLDLNL
Sbjct: 60  LSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCLKEKYEGKLRMQSDLDSLSGKLDLNL 119

Query: 121 HDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVE 180
            DCGLLIKTGVLGEATLPL+V+ S  +++  T+ N RELLARLQIGHLEAKH+ALDS+VE
Sbjct: 120 RDCGLLIKTGVLGEATLPLAVSSSVAESDVATYNNIRELLARLQIGHLEAKHRALDSVVE 179

Query: 181 AMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLP 240
           AMKEDEK+VL+V+GRSNIAALVQLLTATSPRIREKTVTVI SLAESGSCENWLVSEGVLP
Sbjct: 180 AMKEDEKSVLSVLGRSNIAALVQLLTATSPRIREKTVTVISSLAESGSCENWLVSEGVLP 239

Query: 241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           PLIRLVESGSTVGKEKATISLQRLSMSAE ARAIVGH GVRPL+E+CQ GDSVSQAAAAC
Sbjct: 240 PLIRLVESGSTVGKEKATISLQRLSMSAETARAIVGHSGVRPLVELCQIGDSVSQAAAAC 299

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
           TLKNISAVPEVRQ LAEEGIV VMI LL+CGILLGSKE+AAECLQNLTASNENLRR+V+S
Sbjct: 300 TLKNISAVPEVRQALAEEGIVRVMINLLNCGILLGSKEHAAECLQNLTASNENLRRNVIS 359

Query: 361 EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAA 420
           EGG+RSLLAYLDGPLPQESAVGALRNLVGSV +E L+SLG  PRL HVLK+GSLGAQQAA
Sbjct: 360 EGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLIPRLAHVLKSGSLGAQQAA 419

Query: 421 ASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR 480
           A+A+CRVC+S +MKK+VGEAGC PLL+K+LEAK NSVREVAAQAI+SL+ + QN REVK+
Sbjct: 420 AAAICRVCSSTDMKKMVGEAGCIPLLVKMLEAKSNSVREVAAQAIASLMVVSQNRREVKK 479

Query: 481 DDKSVPNLVQLLDPSPQNTAKKYAVACLASLS--------------------------PS 514
           DDKSVPNLVQLLD SPQNTAKKYAV CL SLS                          P 
Sbjct: 480 DDKSVPNLVQLLDHSPQNTAKKYAVTCLGSLSSCKKCKKLMISYGAIGYLKKLTEMDIPG 539

Query: 515 ARKLLERLERGRLRSFFSRK 534
           A+KL ERLERG+ RS FS+K
Sbjct: 540 AKKLHERLERGKFRSLFSKK 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454484|ref|XP_004144984.1| PREDICTED: armadillo repeat-containing protein 3-like [Cucumis sativus] gi|449472474|ref|XP_004153606.1| PREDICTED: armadillo repeat-containing protein 3-like [Cucumis sativus]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/565 (75%), Positives = 484/565 (85%), Gaps = 31/565 (5%)

Query: 1   MVEDGG-----NGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIP 55
           MVE+G       G  +  +SA+EWLL AQ+LVPVA+EKA ++K FPGRWKMI+SKLEQ+P
Sbjct: 1   MVEEGSVHRSSGGTDSEAESAEEWLLQAQKLVPVALEKALEVKVFPGRWKMIVSKLEQLP 60

Query: 56  SHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGK 115
           S LSDLSSHPCFSKN LC+EQLQAV  +LKE +ELA+LCV+EK+EGKLR+QSDLD+LSGK
Sbjct: 61  SRLSDLSSHPCFSKNVLCKEQLQAVLNSLKETVELAKLCVREKFEGKLRIQSDLDSLSGK 120

Query: 116 LDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKAL 175
           LDLNL DCGLLIKTGVLGEATLPL ++G S+  E+T +GN RELLARLQIGH+EAKH+AL
Sbjct: 121 LDLNLRDCGLLIKTGVLGEATLPLPLSGCSSQWESTDYGNIRELLARLQIGHMEAKHRAL 180

Query: 176 DSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS 235
           DSLVE +KED+ NVL++ GR+N+AALVQLLTATS  IREKT+ +IC LAESGSCENWLVS
Sbjct: 181 DSLVEIIKEDDDNVLSIFGRNNVAALVQLLTATSLCIREKTINLICLLAESGSCENWLVS 240

Query: 236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295
           EGVLPPLIRLVESG+ V KEKA ISLQRLSMSA+ ARAIVGHGGVRPLIE+C+TGDSVSQ
Sbjct: 241 EGVLPPLIRLVESGTAVAKEKAVISLQRLSMSADTARAIVGHGGVRPLIELCKTGDSVSQ 300

Query: 296 AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR 355
           AAAACTLKNISAVPEVRQ LAEEGI+ VMI L+DCGILLGSKEYAAECLQNLTASNE+LR
Sbjct: 301 AAAACTLKNISAVPEVRQTLAEEGIIRVMISLVDCGILLGSKEYAAECLQNLTASNESLR 360

Query: 356 RSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLG 415
           RSV+SEGG+R +LAYLDGPLPQESAVGALRN+V SVS E+L+SLGF PRLVHVLK+GS+G
Sbjct: 361 RSVISEGGLRCILAYLDGPLPQESAVGALRNIVSSVSMELLLSLGFLPRLVHVLKSGSVG 420

Query: 416 AQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC 475
           AQQAAASA+CRVC + EMKKL+GEA C PLLIKLLE+K NSVREVAAQAISSLVTL QNC
Sbjct: 421 AQQAAASAICRVCNTPEMKKLIGEAECIPLLIKLLESKSNSVREVAAQAISSLVTLSQNC 480

Query: 476 REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS----------------------- 512
           REVKRD+KSVPNLVQLLDP PQNTAKKYAVACL SLS                       
Sbjct: 481 REVKRDEKSVPNLVQLLDPIPQNTAKKYAVACLVSLSSSRKCKKLMISYGAIGYLKKLSE 540

Query: 513 ---PSARKLLERLERGRLRSFFSRK 534
              P ++KLLE+LERG+LRS F RK
Sbjct: 541 MDTPGSKKLLEKLERGKLRSLFGRK 565

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2043709	553	AT2G45720 "AT2G45720" [Arabido	0.947	0.915	0.683	1.5e-179
TAIR|locus:2198235	574	AT1G01830 "AT1G01830" [Arabido	0.945	0.879	0.631	4.5e-162
TAIR|locus:2157358	555	AT5G50900 [Arabidopsis thalian	0.936	0.900	0.365	1.1e-73
TAIR|locus:2056529	580	AT2G05810 "AT2G05810" [Arabido	0.865	0.796	0.337	2.3e-55
TAIR|locus:2197654	573	AT1G61350 [Arabidopsis thalian	0.865	0.806	0.304	1.3e-52
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.462	0.297	0.271	8.8e-14
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.468	0.328	0.269	1.3e-13
TAIR|locus:2135788	402	AT4G12710 [Arabidopsis thalian	0.520	0.691	0.257	5.5e-13
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.604	0.558	0.230	2.8e-12
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.595	0.549	0.251	7.6e-12

TAIR|locus:2043709 AT2G45720 "AT2G45720" [Arabidopsis thaliana (taxid:3702)]

 Score = 1743 (618.6 bits), Expect = 1.5e-179, P = 1.5e-179
 Identities = 352/515 (68%), Positives = 419/515 (81%)

Query:     1 MVEDG-GNGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLS 59
             MVE+  GN  L + Q+ ++ LL AQELVP+A+ KAR +KGF  RW++IIS+LE+IP+ LS
Sbjct:     1 MVEEKTGNVTLLD-QTVEDLLLQAQELVPIALSKARTVKGFSSRWRVIISRLEKIPTCLS 59

Query:    60 DLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLN 119
             DLSSHPCFSK+ LC+EQLQAV +TLKE IELA +CV EK EGKL+MQSDLD+LS K+DL+
Sbjct:    60 DLSSHPCFSKHTLCKEQLQAVLETLKETIELANVCVSEKQEGKLKMQSDLDSLSAKIDLS 119

Query:   120 LHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLV 179
             L DCGLL+KTGVLGE T PLS   S+ D E  +    RELLARLQIGHLE+K KAL+ LV
Sbjct:   120 LKDCGLLMKTGVLGEVTKPLS--SSTQDLETFS---VRELLARLQIGHLESKRKALEQLV 174

Query:   180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL 239
             E MKEDEK V+  +GR+N+A+LVQLLTATSP +RE  VTVICSLAESG CENWL+SE  L
Sbjct:   175 EVMKEDEKAVITALGRTNVASLVQLLTATSPSVRENAVTVICSLAESGGCENWLISENAL 234

Query:   240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA 299
             P LIRL+ESGS V KEKA ISLQR+S+S+E +R+IVGHGGV PLIEIC+TGDSVSQ+A+A
Sbjct:   235 PSLIRLLESGSIVAKEKAVISLQRMSISSETSRSIVGHGGVGPLIEICKTGDSVSQSASA 294

Query:   300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
             CTLKNISAVPEVRQ LAEEGIV VMI +L+CGILLGSKEYAAECLQNLT+SNE LRRSV+
Sbjct:   295 CTLKNISAVPEVRQNLAEEGIVKVMINILNCGILLGSKEYAAECLQNLTSSNETLRRSVI 354

Query:   360 SEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKXXXXXXXXX 419
             SE GI++LLAYLDGPLPQES V A+RNLVGSVS E    +   P LVHVLK         
Sbjct:   355 SENGIQTLLAYLDGPLPQESGVAAIRNLVGSVSVETYFKI--IPSLVHVLKSGSIGAQQA 412

Query:   420 XXXXXCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK 479
                  CR+ TS E K+++GE+GC PLLI++LEAK +  REVAAQAI+SLVT+P+NCREVK
Sbjct:   413 AASTICRIATSNETKRMIGESGCIPLLIRMLEAKASGAREVAAQAIASLVTVPRNCREVK 472

Query:   480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514
             RD+KSV +LV LL+PSP N+AKKYAV+ LA+L  S
Sbjct:   473 RDEKSVTSLVMLLEPSPGNSAKKYAVSGLAALCSS 507

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2198235 AT1G01830 "AT1G01830" [Arabidopsis thaliana (taxid:3702)]

 Score = 1578 (560.5 bits), Expect = 4.5e-162, P = 4.5e-162
 Identities = 322/510 (63%), Positives = 391/510 (76%)

Query:     7 NGALANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPC 66
             N  + + QS +EWL     L+P  + KA+ +K F GRWK IISK+EQIP+ LSDLSSHPC
Sbjct:    23 NQMIMDKQSVEEWLSRVNSLIPSVLSKAKTVKKFTGRWKTIISKIEQIPACLSDLSSHPC 82

Query:    67 FSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLL 126
             FSKN LC EQLQ+V+KTL E IELAE C  +KYEGKLRMQSDLD+LSGKLDLNL DCG+L
Sbjct:    83 FSKNKLCNEQLQSVAKTLSEVIELAEQCSTDKYEGKLRMQSDLDSLSGKLDLNLRDCGVL 142

Query:   127 IKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE 186
             IKTGVLGEATLPL ++ SS   E     + +ELLARLQIGHLE+KH AL+SL+ AM+EDE
Sbjct:   143 IKTGVLGEATLPLYISSSS---ETPKISSLKELLARLQIGHLESKHNALESLLGAMQEDE 199

Query:   187 KNVLA-VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRL 245
             K VL  ++GR+N+AALVQLLTATS RIREK V +I  LAESG C+ WL+SEGVLPPL+RL
Sbjct:   200 KMVLMPLIGRANVAALVQLLTATSTRIREKAVNLISVLAESGHCDEWLISEGVLPPLVRL 259

Query:   246 VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI 305
             +ESGS   KEKA I++QRLSM+ E AR I GHGG+ PLI++C+TGDSVSQAA+A  LKN+
Sbjct:   260 IESGSLETKEKAAIAIQRLSMTEENAREIAGHGGITPLIDLCKTGDSVSQAASAAALKNM 319

Query:   306 SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR 365
             SAV E+RQ+LAEEGI+ V I LL+ GILLGS+E+ AECLQNLTA+++ LR ++VSEGG+ 
Sbjct:   320 SAVSELRQLLAEEGIIRVSIDLLNHGILLGSREHMAECLQNLTAASDALREAIVSEGGVP 379

Query:   366 SLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXC 425
             SLLAYLDGPLPQ+ AV ALRNL+ SV+ E+ ++L   PRL HVLK              C
Sbjct:   380 SLLAYLDGPLPQQPAVTALRNLIPSVNPEIWVALNLLPRLRHVLKSGSLGAQQAAASAIC 439

Query:   426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
             R   S E K+LVGE+GC P ++KLLE+K N  RE AAQAI+ LV   +  RE+K+D KSV
Sbjct:   440 RFACSPETKRLVGESGCIPEIVKLLESKSNGCREAAAQAIAGLVAEGRIRRELKKDGKSV 499

Query:   486 -PNLVQLLDPSPQNTAKKYAVACLASLSPS 514
               NLV LLD +P NTAKKYAVA L  +S S
Sbjct:   500 LTNLVMLLDSNPGNTAKKYAVAGLLGMSGS 529

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2157358 AT5G50900 [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 186/509 (36%), Positives = 296/509 (58%)

Query:    13 IQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNAL 72
             + ++D+      E++   ++    +  F  +W  I +KL  + + LSD S     S N L
Sbjct:     3 VPNSDDGDRSLTEVITSLIDSIPNLLSFKCKWSSIRAKLADLKTQLSDFSDFAGSSSNKL 62

Query:    73 CREQLQAVSKTLKEAIELAELCV-KEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGV 131
               + L +V +TL +A+ +A  C   +  EGKL+ QS++D++  +LD ++ D  +LIK+G+
Sbjct:    63 AVDLLVSVRETLNDAVAVAARCEGPDLAEGKLKTQSEVDSVMARLDRHVKDAEVLIKSGL 122

Query:   132 LGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLA 191
             L +  + +S    S+  EA      R L+ RLQIG +E+K+ A+DSL+E ++ED+KNV+ 
Sbjct:   123 LIDNGIVVSGFSISSKKEAVRL-EARNLVIRLQIGGVESKNSAIDSLIELLQEDDKNVMI 181

Query:   192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV--LPPLIRLVESG 249
              + +  +  LV+LL + S  ++EKTV VI  ++   S ++ L++EG+  L  L+R++ESG
Sbjct:   182 CVAQGVVPVLVRLLDSCSLVMKEKTVAVISRISMVESSKHVLIAEGLSLLNHLLRVLESG 241

Query:   250 STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP 309
             S   KEKA ++LQ LS+S E ARAI   GG+  L+EICQ G   SQA AA  L+N++   
Sbjct:   242 SGFAKEKACVALQALSLSKENARAIGCRGGISSLLEICQGGSPGSQAFAAGVLRNLALFG 301

Query:   310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA 369
             E ++   EE  + V+I ++  G  L ++E A  CL NLT+ +E+L  SVV EGGI+ L +
Sbjct:   302 ETKENFVEENAIFVLISMVSSGTSL-AQENAVGCLANLTSGDEDLMISVVREGGIQCLKS 360

Query:   370 YLDGPLPQESA-VGA--LRNL-VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXC 425
             + D     +S  VG   L+NL +  + +EV+IS GF PRLV VL                
Sbjct:   361 FWDSVSSVKSLEVGVVLLKNLALCPIVREVVISEGFIPRLVPVLSCGVLGVRIAAAEAVS 420

Query:   426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
              +  S++ +K +GE+GC   LI +L+ K    +E A++A+S+L+    N +  K+ DK V
Sbjct:   421 SLGFSSKSRKEMGESGCIVPLIDMLDGKAIEEKEAASKALSTLLVCTSNRKIFKKSDKGV 480

Query:   486 PNLVQLLDPSPQNTAKKYAVACLASLSPS 514
              +LVQLLDP  +   K+Y V+ L  L  S
Sbjct:   481 VSLVQLLDPKIKKLDKRYTVSALELLVTS 509

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056529 AT2G05810 "AT2G05810" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 161/477 (33%), Positives = 252/477 (52%)

Query:    37 IKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVK 96
             ++ F GRW+++ SKL  + S LS LS  P +S+N L    L ++   L+    L++ C  
Sbjct:    41 VRSFIGRWQILRSKLFTLNSSLSSLSESPHWSQNPLLHTLLPSLLSNLQRLSSLSDQCSS 100

Query:    97 EKYEG-KLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEAT-LPLSVAGSSTDAEATTHG 154
               + G KL MQSDLD  S  L  ++ D  LL+++GVL +   + LS+   ++D +     
Sbjct:   101 ASFSGGKLLMQSDLDIASSSLSTHISDLDLLLRSGVLHQQNAIVLSLPPPTSDKDDIAFF 160

Query:   155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIR 213
               R+L  RLQIG  E K K+L+SL++ + ++EK+   +    N+  LV LL     P IR
Sbjct:   161 -IRDLFTRLQIGGAEFKKKSLESLLQLLTDNEKSARIIAKEGNVGYLVTLLDLHHHPLIR 219

Query:   214 EKTVTVICSLAESGSCENWLVSE-GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR 272
             E  +  +  L  S +     V E G L PL+RL+E+GS+  K +A I+++ ++     A 
Sbjct:   220 EHALAAVSLLTSSSADSRKTVFEQGGLGPLLRLLETGSSPFKTRAAIAIEAITADPATAW 279

Query:   273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI 332
             AI  +GGV  LIE C++G    Q   A  + NI+AV E+R  LAEEG + V+I+LL  G 
Sbjct:   280 AISAYGGVTVLIEACRSGSKQVQEHIAGAISNIAAVEEIRTTLAEEGAIPVLIQLLISGS 339

Query:   333 LLGSKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLD---GPLPQESAVGALRNL- 387
                 +E  A  +  +++S E  R  +V E GG++ L+  +     P   E  + AL  + 
Sbjct:   340 S-SVQEKTANFISLISSSGEYYRDLIVRERGGLQILIHLVQESSNPDTIEHCLLALSQIS 398

Query:   388 -VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEAGCTPLL 446
              + +VS+ +  S  F  RL  ++K                +  S   K+ V  A C   L
Sbjct:   399 AMETVSRVLSSSTRFIIRLGELIKHGNVILQQISTSLLSNLTISDGNKRAV--ADCLSSL 456

Query:   447 IKLLEA-KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKK 502
             I+L+E+ KP  ++E A +A  SL+T+  N +E+ RD+KSV  LVQ+LDP  +    K
Sbjct:   457 IRLMESPKPAGLQEAATEAAKSLLTVRSNRKELMRDEKSVIRLVQMLDPRNERMNNK 513

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2197654 AT1G61350 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 149/490 (30%), Positives = 266/490 (54%)

Query:    23 AQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSK 82
             A E +   +  +  IK F  +W++I +KL+++ S L  L +       +L    + A+  
Sbjct:    17 AIEAISSLISLSHSIKSFNIKWQLIRTKLQELYSGLDSLRNLNSGFDPSLS-SLISAILI 75

Query:    83 TLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVL--GEATLPLS 140
             +LK+  +LA  CV   + GKL MQSDLD ++GK D +  +   +   G+L  G A + L 
Sbjct:    76 SLKDTYDLATRCVNVSFSGKLLMQSDLDVMAGKFDGHTRNLSRIYSAGILSHGFAIVVLK 135

Query:   141 VAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
               G++   +   +   R+LL R++IG LE K +AL  L EAM+ED++ V  ++  S++  
Sbjct:   136 PNGNACKDDMRFY--IRDLLTRMKIGDLEMKKQALVKLNEAMEEDDRYVKILIEISDMVN 193

Query:   201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATIS 260
             ++     +   I+E++   +  ++  GS  + L+  GV+ PL+R++E+G+ VG+E +   
Sbjct:   194 VLVGFLDSEIGIQEESAKAVFFISGFGSYRDVLIRSGVIGPLVRVLENGNGVGREASARC 253

Query:   261 LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQA-AAAC-TLKNISAVPEVRQ-MLAE 317
             L +L+ ++E A ++  HGGV  L++IC   D   +    +C  L+N+  V E+++ M+ E
Sbjct:   254 LMKLTENSENAWSVSAHGGVSALLKICSCSDFGGELIGTSCGVLRNLVGVEEIKRFMIEE 313

Query:   318 EGIVSVMIKLLDCGILLGSKEY-----AAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372
             +  V+  IKL+      GSKE      + + L ++   +E  R  +V EGGI+ L++ L 
Sbjct:   314 DHTVATFIKLI------GSKEEIVQVNSIDLLLSMCCKDEQTRDILVREGGIQELVSVLS 367

Query:   373 GP------LPQESAVGALRNLV-GSVS-QEVLISLGFFPRLVHVLKXXXXXXXXXXXXXX 424
              P        +E A+ A+ NL  GS      L+   F   L+++L+              
Sbjct:   368 DPNSLSSSKSKEIALRAIDNLCFGSAGCLNALMGCKFLDHLLNLLRNGEISVQESALKVT 427

Query:   425 CRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDK 483
              R+C+   E+K+++GEAG  P L+K L+AK   VRE+A+ A+  L+++P+N ++  +DD 
Sbjct:   428 SRLCSLQEEVKRIMGEAGFMPELVKFLDAKSIDVREMASVALYCLISVPRNRKKFAQDDF 487

Query:   484 SVPNLVQLLD 493
             ++  ++QLLD
Sbjct:   488 NISYILQLLD 497

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 69/254 (27%), Positives = 121/254 (47%)

Query:   157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216
             ++L+  L+   L+ + +A   L    K +  N + +     I  LV+LL +T    +E  
Sbjct:   547 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 606

Query:   217 VTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG 276
             VT + +L+ + + +  +   G + PLI ++E+GS+  KE +  +L  LS+  E    I  
Sbjct:   607 VTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQ 666

Query:   277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGS 336
              G + PL+++   G    +  AA  L N+S   E + M+ + G V  +I L+D     G 
Sbjct:   667 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAA--GM 724

Query:   337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-GPLP-QESAVGALRNLVGSVSQ- 393
              + A   L NL    E  R ++  EGGI  L+  ++ G    +E+A  AL  L  +  + 
Sbjct:   725 VDKAVAVLANLATIPEG-RNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRF 783

Query:   394 -EVLISLGFFPRLV 406
               +++  G  P LV
Sbjct:   784 CNMVLQEGAVPPLV 797

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 72/267 (26%), Positives = 125/267 (46%)

Query:   206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
             TA +  IR  T+  I +    G C       G + PL+ L+ S   + +E A  +L  LS
Sbjct:   490 TAAAAEIRHLTINSIENRVHIGRC-------GAITPLLSLLYSEEKLTQEHAVTALLNLS 542

Query:   266 MSAEMARA-IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGI-VSV 323
             +S E+ +A IV  G + PL+ +  TG+  ++  +A +L ++S +   R+ + +    +  
Sbjct:   543 IS-ELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQA 601

Query:   324 MIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ-ESAVG 382
             ++ LL  G   G K+ AA  L NL+ +++N  R +V    ++ L+  LD  L   + AV 
Sbjct:   602 LVNLLGKGTFRGKKD-AASALFNLSITHDNKAR-IVQAKAVKYLVELLDPDLEMVDKAVA 659

Query:   383 ALRNL--VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCRVC-TSAEMKKLVGE 439
              L NL  VG   ++ ++  G  P LV  +                ++C  S +   LV +
Sbjct:   660 LLANLSAVGE-GRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQ 718

Query:   440 AGCTPLLIKLLEAKPNSVREVAAQAIS 466
              G  P L+ L ++     +E A Q +S
Sbjct:   719 EGAIPPLVALSQSGTQRAKEKAQQLLS 745

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2135788 AT4G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 75/291 (25%), Positives = 137/291 (47%)

Query:   112 LSGKLDLNLH-DCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEA 170
             LS KL   LH D    I+        L  S   SS  ++    G    L+  L   +++A
Sbjct:    50 LSKKL---LHGDLDFRIEAAKEIRKLLRKSPVKSSARSKLADAGVIPPLVPMLFSSNVDA 106

Query:   171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE 230
             +H +L +L+     +E+N + ++    +  L+Q+L   +  +RE     I +L+ + + +
Sbjct:   107 RHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPANK 166

Query:   231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI---C 287
               ++S GV P LI+++ SG+  GK  A  +L  LS   E +  I+    V PLI +   C
Sbjct:   167 AMIISSGVPPLLIQMLSSGTVQGKVDAVTALHNLSACKEYSAPILDAKAVYPLIHLLKEC 226

Query:   288 QTGDSVSQAAAACTLKNISAVPEVRQMLA--EEGIVSVMIKLLDCGILLGSKEYAAECLQ 345
             +     ++ A A     +S   + R  +   E+GI++ +++ ++ G  L S E+A   L 
Sbjct:   227 KKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILT-LVETVEDGSPL-SIEHAVGALL 284

Query:   346 NLTASN-ENLRRSVVSEGGIRSLLAY-LDGPLPQESAVGALRNLVGSVSQE 394
             +L  S+ +  R+ ++ EG I  LL+  +DG          L +L+    +E
Sbjct:   285 SLCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSRDRARVLLDLLRETPRE 335

GO:0005737 "cytoplasm" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 196 (74.1 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 79/343 (23%), Positives = 154/343 (44%)

Query:   167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-E 225
             H+  +  A  +L+  M   E+N   ++    +  LV LL++T P ++    T + ++A +
Sbjct:   180 HIRVQRNATGALLN-MTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVD 238

Query:   226 SGSCENWLVSEG-VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI 284
               + +    +E  ++  L+ L++S S+  K +AT++L+ L+        IV  GG+  L+
Sbjct:   239 EANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLV 298

Query:   285 EICQTGDSVSQ--AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE 342
             ++ Q+ DS+    A+ AC ++NIS  P    ++ + G +  +++LLD       + +A  
Sbjct:   299 KLIQS-DSIPLVLASVAC-IRNISIHPLNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVS 356

Query:   343 CLQNLTASNENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGALRNLVG--SVSQEVLIS 398
              L+NL AS+E  R+     G +     LA LD P+  +S + A   ++    VS+  L+ 
Sbjct:   357 TLRNLAASSEKNRKEFFESGAVEKCKELA-LDSPVSVQSEISACFAILALADVSKLDLLE 415

Query:   399 LGFFPRLVHVLKXXXXXXXXXXXXXXCRVCTSAEMKKLVGEA------GCTPLLIKLLEA 452
                   L+ +                  +C+       + EA      G    LI+ L++
Sbjct:   416 ANILDALIPMTFSQNQEVSGNAAAALANLCSRVNNYTKIIEAWDRPNEGIRGFLIRFLKS 475

Query:   453 KPNSVREVAAQAISSLVTLPQNCRE--VKRDDKSVPNLVQLLD 493
                +   +A   I  L+    +  E  VK DD  +  + ++ D
Sbjct:   476 DYATFEHIALWTILQLLESHNDKVEDLVKNDDDIINGVRKMAD 518

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 192 (72.6 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 83/330 (25%), Positives = 142/330 (43%)

Query:   147 DAEATTHGNTRELLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLL 205
             D           +L  LQ   +E +  A  +L   A+  D K ++  +G   +A L++ +
Sbjct:    99 DVREVDRDTLEPILFLLQSSDIEVQRAASAALGNLAVNADNKVLIVALG--GLAPLIKQM 156

Query:   206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
              + +  ++   V  I +LA     +  +   G L PLIRL +S     +  AT +L  ++
Sbjct:   157 MSPNVEVQCNAVGCITNLATHEDNKAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMT 216

Query:   266 MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA--EEGIVSV 323
              S +  + +V  G +  L+++  + D   Q      L NI+     R+ LA  E  +V  
Sbjct:   217 HSDDNRQQLVNAGAIPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQS 276

Query:   324 MIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP-LPQE-SAV 381
             ++ L+D        + AA  L+NL AS+E  +  +V   G+  LL  L    LP   SAV
Sbjct:   277 LVHLMDSSTPKVQCQ-AALALRNL-ASDEKYQLEIVRAKGLPPLLRLLQSSYLPLILSAV 334

Query:   382 GALRNL-VGSVSQEVLISLGFFPRLVHVLKXXXXXXXXXXXXXXCR--VCTSAEMKKLVG 438
               +RN+ +  +++  +I  GF   LV +L                R    +S   K+LV 
Sbjct:   335 ACIRNISIHPLNESPIIDAGFLKPLVDLLGSTDNEEIQCHAISTLRNLAASSDRNKELVL 394

Query:   439 EAGCTPLLIKLLEAKPNSVREVAAQAISSL 468
             +AG       L+   P +V+     AI+ L
Sbjct:   395 QAGAVQKCKDLVLRVPVTVQSEMTAAIAVL 424

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-11
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-11
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.002
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 358 VVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAGS 413
           V+  GG+ +L++ L       Q  A  AL NL    +   + ++  G  P LV +LK+  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 414 LGAQQAAASALCRVCTSAEMKKL-VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
               +AA  AL  +    E  KL V EAG  P L+ LL++    +++ A  A+S+L +
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 86/336 (25%), Positives = 155/336 (46%), Gaps = 34/336 (10%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L++ L+ G L AK  A   L    KE++  V  ++G   I  L+ LL + S   ++    
Sbjct: 63  LVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG-GCIPPLLSLLKSGSAEAQKAAAE 121

Query: 219 VICSLAESGSCEN----WLVSEGVLPPLIRLVESGSTVGKE---KATISLQRLSMSAE-M 270
            I +++  G  ++       +EGV+P L   ++ G+   K      T +L+ L  S +  
Sbjct: 122 AIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF 181

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKN-ISAVPEVRQMLAEEGIVSVMIKLLD 329
             A +  GGV  L+++  +G+S +QA AA  L   + A       + + G V  ++KLL 
Sbjct: 182 WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLG 241

Query: 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP-----------QE 378
            G  +  +  AA  L+ L++ ++  ++++   GGI +L+     P             QE
Sbjct: 242 QGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE 301

Query: 379 SAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQ-----AAASALCRVCTSAEM 433
           +A+GAL N+ G +S  +++ LG       + ++    A       A A AL    +SAE 
Sbjct: 302 NAMGALANICGGMSA-LILYLG------ELSESPRSPAPIADTLGALAYALMVFDSSAES 354

Query: 434 KKLVGEAGCTPLLIKLLEAK-PNSVREVAAQAISSL 468
            +         +L+KLL+ +    V+E   +A++SL
Sbjct: 355 TRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL 390

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEA 452
           E +I  G  P LV +L +     Q+ AA AL  +   + +  + V EAG  P L++LL++
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           +   V + A  A+ +L   P++ + +  +   VP LV LLD S     +K A   L++L+
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD-SSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)

Query: 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTG 290
            ++  G LP L+ L+ S     + +A  +L  LS  + +  +A+V  GG+  L+++ ++ 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 291 DSVSQAAAACTLKNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
           D     AA   L+N++A PE  + ++ E G V  ++ LLD       ++ A   L NL +
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 34/282 (12%)

Query: 234 VSEGVLPPLIRLVE-----SGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRP-LIEI 286
             +G L  + + +E     S S   KE  T  L  L+ + E AR  +G H    P L+ +
Sbjct: 7   DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSL 66

Query: 287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN 346
            ++G   ++  AA  L  +    ++R  +   G +  ++ LL  G     K  AAE +  
Sbjct: 67  LRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKA-AAEAIYA 125

Query: 347 LT---ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAV-----GALRNLVGSVSQEVLIS 398
           ++    S+    +   +EG + SL   L     Q+  V     GALRNL GS       +
Sbjct: 126 VSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS-------T 178

Query: 399 LGFFPR---------LVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIK 448
            GF+           LV +L +G+  AQ  AAS L R+  + E     V +AG    L+K
Sbjct: 179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLK 238

Query: 449 LLEAKPN-SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV 489
           LL      SVR  AA A+ +L +  +  ++   D   +P L+
Sbjct: 239 LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALI 280

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 81/326 (24%), Positives = 142/326 (43%), Gaps = 17/326 (5%)

Query: 201 LVQLLTATSPR-IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATI 259
           LV+LL     + ++E+ +  + SL  +      L        L+ L+   +   +E+   
Sbjct: 367 LVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426

Query: 260 SLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAE 317
           +L  L      +  A+ G  GV+ LI +        Q  A   L  ++  V E +  +  
Sbjct: 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486

Query: 318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD--GPL 375
            G +  +++LL+ G    +KE +A  L NL   +E++R  V S G + +LL  L   GP 
Sbjct: 487 AGGIPPLVQLLETGSQ-KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPK 545

Query: 376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435
            QE A   L  LV + +    IS     +L  +L      ++      L  V + A ++ 
Sbjct: 546 GQEIAAKTLTKLVRT-ADAATIS-----QLTALLLGDLPESKVHVLDVLGHVLSVASLED 599

Query: 436 LV--GEAGCTPL--LIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQL 491
           LV  G A    L  LI+LL +     +E AA  ++ + +  Q+  E    D+ +   ++L
Sbjct: 600 LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659

Query: 492 LDPSPQNTAKKYAVACLASLSPSARK 517
           L  + +  A + A   LA+LS S ++
Sbjct: 660 LTNNTEAVATQSA-RALAALSRSIKE 684

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD 372
           + + + G +  ++ LL        +  AA  L NL+A N +  ++VV  GG+ +L+  L 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 373 GPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428
                  ++A+ ALRNL       + +++  G  P+LV++L + +   Q+ A  AL  + 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 429 T 429
           +
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 190 LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSE-GVLPPLIRLVES 248
            AV+    + ALV LL+++   ++ +    + +L+   +     V E G LP L++L++S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 249 GSTVGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
                 + A  +L+ L+   E  + IV   GGV  L+ +  + +   Q  A   L N+++
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 47/281 (16%)

Query: 191 AVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENWLVSEGVLPPLIRLVESG 249
           A+     I  LVQLL   S + +E + TV+ +L   S      + S G +P L+ L+++G
Sbjct: 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG 542

Query: 250 STVGKEKATISLQRLSMSAEMA---------------------------------RAIVG 276
              G+E A  +L +L  +A+ A                                   +V 
Sbjct: 543 GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602

Query: 277 HG-----GVRPLIEICQTGDSVSQAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDC 330
            G      +R LI++  +    +Q  AA  L +I S+  ++ + LA + I++  IKLL  
Sbjct: 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTN 662

Query: 331 GILLGSKEYAAECLQNLTAS-NENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGALRNL 387
                + + +A  L  L+ S  EN + S  +E  I+ L  LA        E AV AL NL
Sbjct: 663 NTEAVATQ-SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721

Query: 388 V--GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
           +    V+ E L      P L  VL+ G+L  ++ AA AL +
Sbjct: 722 LSDPEVAAEALAEDIILP-LTRVLREGTLEGKRNAARALAQ 761

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKE 255
           +  L+QLL+++    +EK  +V+  +  S    CE+    E ++ P I+L+ + +     
Sbjct: 611 LRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE-IINPCIKLLTNNTEAVAT 669

Query: 256 KATISLQRLSMSAEMAR--AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ 313
           ++  +L  LS S +  R  +      ++PLI++ ++        A C L N+ + PEV  
Sbjct: 670 QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA 729

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS---NENLRRSVVSEGGIRSLLAY 370
               E I+  + ++L  G L G K  AA  L  L      ++ L+ SV   G + +L+  
Sbjct: 730 EALAEDIILPLTRVLREGTLEG-KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL 788

Query: 371 LDG 373
           L+ 
Sbjct: 789 LNS 791

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
           S E K+ V EAG  P L++LL +    V+E AA A+S+L  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
           S E  +A++  G V PL+++  + D   Q  AA  L N++A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.98
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.86
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.85
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.72
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.71
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.7
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.7
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.69
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.64
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.59
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.57
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.56
PRK09687	280	putative lyase; Provisional	99.54
PRK09687	280	putative lyase; Provisional	99.51
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.46
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.45
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.43
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.32
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.3
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.29
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.28
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.23
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.23
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.2
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.18
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.18
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.17
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.15
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.14
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.07
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.06
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.05
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.01
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.0
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.99
PTZ00429	746	beta-adaptin; Provisional	98.99
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.95
PTZ00429	746	beta-adaptin; Provisional	98.94
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.91
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.89
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.82
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.78
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.77
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.73
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.71
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.57
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.52
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.5
TIGR02270	410	conserved hypothetical protein. Members are found	98.37
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.35
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.35
TIGR02270	410	conserved hypothetical protein. Members are found	98.32
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.3
COG5369	743	Uncharacterized conserved protein [Function unknow	98.27
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.26
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.23
PF05536	543	Neurochondrin: Neurochondrin	98.21
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.19
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.16
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.14
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.14
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.1
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.09
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.08
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.08
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.03
PF05536	543	Neurochondrin: Neurochondrin	97.99
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.99
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.99
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.99
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.96
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.95
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.93
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.91
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.89
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.89
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.88
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.85
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.83
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.81
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.79
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.77
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.76
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.75
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.71
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.71
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.68
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.65
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.65
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.63
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.63
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.6
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.58
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.48
COG5369	743	Uncharacterized conserved protein [Function unknow	97.44
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.38
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.37
KOG3036	293	consensus Protein involved in cell differentiation	97.3
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.29
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.24
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.23
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.18
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.15
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.04
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.03
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.02
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.97
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.94
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.92
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.91
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.9
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.82
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.81
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.76
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.75
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.71
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.65
KOG3036	293	consensus Protein involved in cell differentiation	96.58
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.58
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.57
KOG0567	289	consensus HEAT repeat-containing protein [General	96.5
PF05004	309	IFRD: Interferon-related developmental regulator (	96.48
KOG0567	289	consensus HEAT repeat-containing protein [General	96.4
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.4
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.31
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.31
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.29
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.18
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.18
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.16
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.16
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.07
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.04
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.04
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.95
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.94
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.92
KOG2062	929	consensus 26S proteasome regulatory complex, subun	95.86
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.79
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.69
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.62
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.58
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.56
PF05004	309	IFRD: Interferon-related developmental regulator (	95.56
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.52
KOG2956	516	consensus CLIP-associating protein [General functi	95.52
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.51
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	95.5
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.42
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.42
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.4
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.39
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.1
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.07
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.95
PRK14707	2710	hypothetical protein; Provisional	94.67
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	94.58
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.5
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.45
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.37
PRK14707	2710	hypothetical protein; Provisional	94.35
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	94.32
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.28
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.25
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.23
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.21
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.2
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.88
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.76
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.68
KOG2956	516	consensus CLIP-associating protein [General functi	93.57
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.41
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.36
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.24
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.2
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.96
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.76
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	92.72
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.63
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	92.46
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.02
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.02
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	91.96
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.73
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.65
KOG2025	892	consensus Chromosome condensation complex Condensi	91.52
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.37
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.21
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.18
KOG2025	892	consensus Chromosome condensation complex Condensi	91.09
COG5116	926	RPN2 26S proteasome regulatory complex component [	90.87
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	90.74
KOG2933	334	consensus Uncharacterized conserved protein [Funct	90.46
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	90.44
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	90.02
KOG0414	1251	consensus Chromosome condensation complex Condensi	90.0
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	89.6
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	89.5
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.09
KOG2062	929	consensus 26S proteasome regulatory complex, subun	88.98
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.53
KOG2137	700	consensus Protein kinase [Signal transduction mech	88.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.24
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	87.68
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.9
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	86.57
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.19
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.63
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	85.29
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.8
COG5098	1128	Chromosome condensation complex Condensin, subunit	84.7
KOG1243	690	consensus Protein kinase [General function predict	84.69
COG5656	970	SXM1 Importin, protein involved in nuclear import	84.66
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	84.61
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	84.38
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	84.37
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	84.37
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	84.32
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	84.1
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	83.54
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	83.4
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	83.26
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.04
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.41
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	82.34
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	81.35
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	81.3
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	80.67
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	80.05

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=3.7e-32  Score=310.36  Aligned_cols=366  Identities=25%  Similarity=0.317  Sum_probs=309.3

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--c-hh-
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--S-CE-  230 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~-~~-  230 (534)
                      .|+.|+..|.+++...|..|+..|.++..+ ++++..++..|++++|+.+|++++++.|+.|+.+|.+|+.++  + ++ 
T Consensus        59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~  137 (2102)
T PLN03200         59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGS  137 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhh
Confidence            489999999999999999999999999865 678888888999999999999999999999999999999875  3 34 


Q ss_pred             HHHHhcCCHHHHHHHHccCC---HHHHHHHHHHHHHhhcChhhHH-HHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471          231 NWLVSEGVLPPLIRLVESGS---TVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~~~~~~-~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (534)
                      ..++..|++|+|+.++++++   ..+++.++.+|.+|+.++++.+ .+++.|+++.|+.++.++++..+..|+++|.+++
T Consensus       138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La  217 (2102)
T PLN03200        138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM  217 (2102)
T ss_pred             hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            45668999999999999873   3467788999999999988875 5689999999999999999999999999998888


Q ss_pred             CC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC-----------
Q 009471          307 AV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP-----------  374 (534)
Q Consensus       307 ~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~-----------  374 (534)
                      .. ++.+..+++.|+|+.|+++++++++..+|++|+++|.||+.+++++++.+++.|+++.|++++..+           
T Consensus       218 ss~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~  297 (2102)
T PLN03200        218 MAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQ  297 (2102)
T ss_pred             cCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccch
Confidence            65 678999999999999999998766547899999999999999999999999999999999998642           


Q ss_pred             chHHHHHHHHHHhhcC--c-----------cH--H---------------------------------------------
Q 009471          375 LPQESAVGALRNLVGS--V-----------SQ--E---------------------------------------------  394 (534)
Q Consensus       375 ~~~~~a~~aL~~La~~--~-----------~~--~---------------------------------------------  394 (534)
                      ..++.|+++|.|||..  .           .+  .                                             
T Consensus       298 ~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~  377 (2102)
T PLN03200        298 ALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTK  377 (2102)
T ss_pred             HHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCc
Confidence            2489999999998872  1           00  0                                             


Q ss_pred             ---------------------HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC
Q 009471          395 ---------------------VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA  452 (534)
Q Consensus       395 ---------------------~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~  452 (534)
                                           .+.+.+.++.|+.++...+.++|..++++|++++.+ .+.++.+.+.|++|.|+++|.+
T Consensus       378 ~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s  457 (2102)
T PLN03200        378 LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL  457 (2102)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence                                 001122334445555556678899999999999965 8899999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHH
Q 009471          453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERL  522 (534)
Q Consensus       453 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l  522 (534)
                      .+..+|+.|+++|.+++......+..+.+.|+++.|+++|.++ +..+++.|+++|.|++.+.+.....+
T Consensus       458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV  526 (2102)
T PLN03200        458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACV  526 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            9999999999999999876554455555689999999999876 45799999999999998755544444

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-33  Score=264.68  Aligned_cols=363  Identities=24%  Similarity=0.315  Sum_probs=323.3

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (534)
                      +...++.+..+++.+...+..|..++.+++-.. +++..+++.+|++.|+.-+..+..++|..++.++.+|+..+++|..
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence            345677788899999999999999999998644 3556677889999998888788889999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (534)
                      +...|++.++.++-++.+..+++.+..+|.+|+...++++.++..|++|.|+.+++++++++|..++.++.|++.....|
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence            99999999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhC--cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--hHHHHHHHHHHhh
Q 009471          313 QMLAEEG--IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLV  388 (534)
Q Consensus       313 ~~i~e~g--~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--~~~~a~~aL~~La  388 (534)
                      +.+++.+  .++.|++++.++++ .++-.|..+|+|+++ +...+..+++.|++|.+++++++|.  .-...+.+++|++
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis  320 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS  320 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc
Confidence            9999866  99999999999998 899999999999998 4556668999999999999998853  3455678899999


Q ss_pred             c-CccHHHHHhcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 009471          389 G-SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (534)
Q Consensus       389 ~-~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL  465 (534)
                      - +-+...+.+.||+.+|+++|+.++. ++|..|..+|++|+. ++.+++.+.+.|.+|.+..++.+++..+|.....++
T Consensus       321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~  400 (550)
T KOG4224|consen  321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI  400 (550)
T ss_pred             cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence            8 6677778899999999999998875 599999999999997 588899999999999999999999999999999999


Q ss_pred             HHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHH
Q 009471          466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLE  520 (534)
Q Consensus       466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~  520 (534)
                      ..|+.....+..+ .+.|.++.|+.++.+. +++++.++..+|.|+++......+
T Consensus       401 a~Lal~d~~k~~l-ld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~Yar  453 (550)
T KOG4224|consen  401 AQLALNDNDKEAL-LDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYAR  453 (550)
T ss_pred             HHHHhccccHHHH-hhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHH
Confidence            9997655554444 5679999999999987 558999999999999998444433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-32  Score=276.08  Aligned_cols=357  Identities=18%  Similarity=0.256  Sum_probs=312.9

Q ss_pred             chHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhH
Q 009471          154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN  231 (534)
Q Consensus       154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~  231 (534)
                      ..|+.++..|.. .++..+.+|+.+|.+++.+..+..+.+++.|.||.+++++.+++.++++.|+++|++++.+.+ +|+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd  188 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD  188 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence            679999999974 458999999999999999999988999999999999999999999999999999999999987 999


Q ss_pred             HHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          232 WLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~Ls~~~~~~~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      .+...|++++|+.++..... .....+.|+|.||+.+......+. -...+|.|..++.+.|+++...+||+|.+|+.++
T Consensus       189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~  268 (514)
T KOG0166|consen  189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS  268 (514)
T ss_pred             HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999998765 678899999999998753222222 1455799999999999999999999999999866


Q ss_pred             -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHH
Q 009471          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALR  385 (534)
Q Consensus       310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~  385 (534)
                       +.-+.+++.|+++.|+++|.+... .++..|+++++|++.+++...+.++..|+++.|..++..   ..++..|++++.
T Consensus       269 ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS  347 (514)
T KOG0166|consen  269 NEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS  347 (514)
T ss_pred             hHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence             677778899999999999999887 799999999999999999999999999999999999974   347899999999


Q ss_pred             Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      |++.  ....+.+++.|++|.|+++|++++..+|++|+|+|.|++.+  ++.-+++++.|++++|+++|.-.+..+...+
T Consensus       348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~  427 (514)
T KOG0166|consen  348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVA  427 (514)
T ss_pred             HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHH
Confidence            9998  45667889999999999999999999999999999999965  7888999999999999999998899999999


Q ss_pred             HHHHHHhcCCCc--------chHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          462 AQAISSLVTLPQ--------NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       462 ~~aL~~L~~~~~--------~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      +.+|.++....+        .-...+.+.|++..+-.|=.+. ++++.+.|...+.+--
T Consensus       428 Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he-n~~Iy~~A~~II~~yf  485 (514)
T KOG0166|consen  428 LDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE-NEEIYKKAYKIIDTYF  485 (514)
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc-cHHHHHHHHHHHHHhc
Confidence            999999984422        2345677889988877766665 4578788877776543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.6e-31  Score=305.35  Aligned_cols=350  Identities=22%  Similarity=0.276  Sum_probs=310.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l  233 (534)
                      .++.|+..|..++.+.+.+++..|..++.++++....+.+.|+++.|+++|++++..+|+.|+++|++++... +++..+
T Consensus       405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI  484 (2102)
T PLN03200        405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI  484 (2102)
T ss_pred             chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4667888899999999999999999999988999999999999999999999999999999999999999765 488999


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (534)
                      ++.|++|+|+++|.+++..+++.|+|+|.|++.++++.+.++ ..|++++|+++++++++..+..++++|.|++.+.+..
T Consensus       485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~  564 (2102)
T PLN03200        485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA  564 (2102)
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh
Confidence            999999999999999999999999999999999877766655 6899999999999999999999999999998764432


Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC---ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS---NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~---~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L  387 (534)
                             .++.++.++.+.++ ..+..++.+|.++...   ++..++.....|+++.|.+++++  +..++.|+++|.++
T Consensus       565 -------~I~~Lv~LLlsdd~-~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL  636 (2102)
T PLN03200        565 -------TISQLTALLLGDLP-ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI  636 (2102)
T ss_pred             -------HHHHHHHHhcCCCh-hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                   34778888887776 7888899999888652   22233333467999999999987  66899999999999


Q ss_pred             hc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHH
Q 009471          388 VG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ  463 (534)
Q Consensus       388 a~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~  463 (534)
                      +.  ++..+.++..|++++++.+|++++.++++.++|+|.+++.+  .+.+..+.+.|++++|++++.+.+.++++.|+.
T Consensus       637 ~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~  716 (2102)
T PLN03200        637 FSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC  716 (2102)
T ss_pred             hcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence            98  45567888999999999999999999999999999999964  566677899999999999999999999999999


Q ss_pred             HHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       464 aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +|.+++.+++++.++.. +++++.|+++|.++. ...|++|+++|.+|+.+
T Consensus       717 ALanLl~~~e~~~ei~~-~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        717 ALANLLSDPEVAAEALA-EDIILPLTRVLREGT-LEGKRNAARALAQLLKH  765 (2102)
T ss_pred             HHHHHHcCchHHHHHHh-cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhC
Confidence            99999999999988886 588999999999983 47999999999999977

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-30  Score=262.09  Aligned_cols=359  Identities=20%  Similarity=0.252  Sum_probs=307.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-hhH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-CEN  231 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~~~  231 (534)
                      ....++..+.++++..+..+...+..+..... .....++..|.|+.+|++|... ++.+|..|+++|.+++.... ...
T Consensus        67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~  146 (514)
T KOG0166|consen   67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK  146 (514)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence            37888889999999999999999999975322 2334555669999999999865 49999999999999998764 677


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccCCc
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVP  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~  309 (534)
                      .+++.|++|.+++++.+++..+++.|.|+|.|++.+.+. +..+..+|++++|+.++...++ .....+.|+|.||+.+.
T Consensus       147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk  226 (514)
T KOG0166|consen  147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK  226 (514)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence            888999999999999999999999999999999988655 5577789999999999988776 67789999999999976


Q ss_pred             hHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          310 EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       310 ~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                      .....+.. ..+++.|..++.+.+. ++...++++|.+|+.+..+..+.+++.|+++.|+.+|.+  +.++.+|+++++|
T Consensus       227 ~P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN  305 (514)
T KOG0166|consen  227 NPSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN  305 (514)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence            43333333 6679999999999887 899999999999999888888999999999999999987  5588999999999


Q ss_pred             hhc--CccHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHH
Q 009471          387 LVG--SVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA  462 (534)
Q Consensus       387 La~--~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~  462 (534)
                      ++.  ....+.++..|.++.|..++. +....++++|+|+|.|++.. .+..++++++|.+|.|+.++++.+..+|..|+
T Consensus       306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence            998  345567889999999999998 55567999999999999965 88999999999999999999999999999999


Q ss_pred             HHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhH
Q 009471          463 QAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSA  515 (534)
Q Consensus       463 ~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~  515 (534)
                      ++++|++.. .++.-.++.+.|.++++..+|.-. +..+...+..+|.++-...
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILKVG  438 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHHHH
Confidence            999999943 566666777789999999999655 3355788888888886653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-31  Score=248.37  Aligned_cols=356  Identities=19%  Similarity=0.279  Sum_probs=321.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .+..|+..+.+++-+.+..+...+.+++.. +.++..+...|++.++.++-++.+..+|..+..+|.++....++|+.++
T Consensus       127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV  205 (550)
T KOG4224|consen  127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV  205 (550)
T ss_pred             ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence            356778888888889999999999999876 5577788888999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCC--ChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHG--GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g--~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (534)
                      ..|++|.|+.++++++.+++++++.++.+++.+..+++.+++.+  .++.|+.++.++++.++..|..+|+|++.+.+.+
T Consensus       206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq  285 (550)
T KOG4224|consen  206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ  285 (550)
T ss_pred             ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence            99999999999999999999999999999999988888888876  9999999999999999999999999999999999


Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG  389 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~  389 (534)
                      ..+++.|.+|.++++++++.. ......+.|+.|++. .+-+...+.+.|.+.+|+++|+-   .+.|.+|..+|+||+.
T Consensus       286 ~eiv~ag~lP~lv~Llqs~~~-plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa  363 (550)
T KOG4224|consen  286 REIVEAGSLPLLVELLQSPMG-PLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA  363 (550)
T ss_pred             hHHHhcCCchHHHHHHhCcch-hHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence            999999999999999998887 577788899999997 45555678899999999999953   6699999999999997


Q ss_pred             --CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471          390 --SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (534)
Q Consensus       390 --~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~  467 (534)
                        ..+...+.+.|.++.+..++.++...+|.+...++..|+.++..+.++.+.|.+|.|+.+..+.+.+++..|+.+|.|
T Consensus       364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N  443 (550)
T KOG4224|consen  364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALIN  443 (550)
T ss_pred             hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence              577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcchHHHHhh-----CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          468 LVTLPQNCREVKRD-----DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       468 L~~~~~~~~~~~~~-----~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++.+.++-..++..     .|.-..|++.+.+. +...+..+.+++..|..+
T Consensus       444 lss~v~~YarviEawd~P~~gi~g~L~Rfl~S~-~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  444 LSSDVEHYARVIEAWDHPVQGIQGRLARFLASH-ELTFRHIARWTIQQLLED  494 (550)
T ss_pred             hhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHh
Confidence            99888777666541     23445788988886 446888889999888876

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.98  E-value=2.9e-30  Score=241.16  Aligned_cols=361  Identities=16%  Similarity=0.183  Sum_probs=306.3

Q ss_pred             hhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCC
Q 009471          150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESG  227 (534)
Q Consensus       150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~  227 (534)
                      ..+...+|.+.+.|.++|.+.+.+|...++++++. .......+++.|.||.+++++++. ..-.+-.|+++|.++++..
T Consensus        67 qq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt  146 (526)
T COG5064          67 QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT  146 (526)
T ss_pred             HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence            34455789999999999999999999999999853 223446778999999999999554 4667889999999999876


Q ss_pred             c-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCCh--HHHHHHHHHHH
Q 009471          228 S-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDS--VSQAAAACTLK  303 (534)
Q Consensus       228 ~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~--~~~~~a~~aL~  303 (534)
                      . ..+.++++|.+|.++++|.+++.++++++.|+|.|++.+++. +..+.+.|++++++.++.+..+  .+...+.|+|.
T Consensus       147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLS  226 (526)
T COG5064         147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLS  226 (526)
T ss_pred             ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHH
Confidence            5 566778999999999999999999999999999999998766 4568889999999999987765  66789999999


Q ss_pred             HccCCc---hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC--chHH
Q 009471          304 NISAVP---EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQE  378 (534)
Q Consensus       304 nLa~~~---~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~  378 (534)
                      ||+.+.   ..-..+  ...+|.|.+++.+.++ ++...|++++..|+.+..+..+.+++.|....|+++|.++  .++.
T Consensus       227 NlcRGknP~P~w~~i--sqalpiL~KLiys~D~-evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt  303 (526)
T COG5064         227 NLCRGKNPPPDWSNI--SQALPILAKLIYSRDP-EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT  303 (526)
T ss_pred             HhhCCCCCCCchHHH--HHHHHHHHHHHhhcCH-HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence            999853   222223  3469999999999887 8999999999999998888888999999999999999874  5789


Q ss_pred             HHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCCh
Q 009471          379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPN  455 (534)
Q Consensus       379 ~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~  455 (534)
                      ++++.++|+..  ....+.++..|+++.+..+|.+....++++|||.+.|+.. +.+..+++++.+.+|+|++++...+.
T Consensus       304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~  383 (526)
T COG5064         304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY  383 (526)
T ss_pred             HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence            99999999998  3445678899999999999999989999999999999985 58899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCcch---HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          456 SVREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       456 ~v~~~A~~aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .++..|+|++.+...+..++   -.+.-+.|.+.+|..+|+-.++ .+-.-++-++.|+...
T Consensus       384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN-kiiev~LD~~eniLk~  444 (526)
T COG5064         384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN-KIIEVALDAIENILKV  444 (526)
T ss_pred             HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc-cchhhhHHHHHHHHhh
Confidence            99999999999998664333   3344467999999999998754 4556668888877665

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=2.8e-30  Score=241.25  Aligned_cols=357  Identities=17%  Similarity=0.255  Sum_probs=303.6

Q ss_pred             hchHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          153 HGNTRELLARLQIGHL-EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~-~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      ...|+.++..+..... -.+.+|+.+|.+++++.....+.+++.|+||.++++|.+++.++++.++++|++++++++ +|
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            3468888998854444 448899999999999888777888999999999999999999999999999999999987 99


Q ss_pred             HHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471          231 NWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (534)
                      +.+.+.|++.+++.++.+..  ......+.|+|.||+..  ++.-|.-. ...+|.|.+++-+.|+++...|||++..|+
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYls  271 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLS  271 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence            99999999999999999874  47788999999999864  43333322 234699999999999999999999999999


Q ss_pred             CCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHH
Q 009471          307 AVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA  383 (534)
Q Consensus       307 ~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~a  383 (534)
                      .++ +.-..+.+.|..+.|+++|.+++. .++..++..++|+..+++...+.+++.|.++.+..+|.+  ..++..+|++
T Consensus       272 Dg~~E~i~avld~g~~~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         272 DGPNEKIQAVLDVGIPGRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             cCcHHHHHHHHhcCCcHHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence            988 666778889999999999999887 799999999999999999888899999999999999988  4689999999


Q ss_pred             HHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----hhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       384 L~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~----~~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      +.|++.  .+..+.+++.+.+|+|+++|.+.+..++++|||++.|....    |+..+++.+.|++++|++++.-.+..+
T Consensus       351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki  430 (526)
T COG5064         351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI  430 (526)
T ss_pred             ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence            999998  35567889999999999999999999999999999999864    889999999999999999999777778


Q ss_pred             HHHHHHHHHHhcCCC--------cc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          458 REVAAQAISSLVTLP--------QN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       458 ~~~A~~aL~~L~~~~--------~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      -+.++.++.++....        .|   -..++.+.|++..+..+-++. +..+-..|.+++...-
T Consensus       431 iev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~-n~~iy~KAYsIIe~fF  495 (526)
T COG5064         431 IEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSV-NRTIYDKAYSIIEKFF  495 (526)
T ss_pred             hhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcc-ccHHHHHHHHHHHHHc
Confidence            888899999887432        11   134566788888777776665 4466666666666554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=4.5e-24  Score=226.90  Aligned_cols=353  Identities=19%  Similarity=0.217  Sum_probs=303.3

Q ss_pred             HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC
Q 009471          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS  250 (534)
Q Consensus       171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~  250 (534)
                      .+-+...|.+++. +++....+.+.|+|+.|+++|++++.++...++.+|.+|+...+++..+.+.|+++.|++++.+++
T Consensus       266 lrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~  344 (708)
T PF05804_consen  266 LRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN  344 (708)
T ss_pred             HHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence            3455666788775 667778888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhc
Q 009471          251 TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC  330 (534)
Q Consensus       251 ~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~  330 (534)
                      .+++..+.++|.|||.+++.+..+++.|.+|.|+.+|.+  +..+..++.+|++++..++.+..+...++++.+++++..
T Consensus       345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~  422 (708)
T PF05804_consen  345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLE  422 (708)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHh
Confidence            999999999999999999999999999999999999985  446677999999999999999999999999999999866


Q ss_pred             CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh------------cC-------------------------
Q 009471          331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL------------DG-------------------------  373 (534)
Q Consensus       331 ~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L------------~~-------------------------  373 (534)
                      ++...+....+..+.|++. ++.+.+.+.+.++++.|++..            ++                         
T Consensus       423 ~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~  501 (708)
T PF05804_consen  423 NSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS  501 (708)
T ss_pred             CCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence            5544677778888899887 556666777777777655432            11                         


Q ss_pred             ---CchHHHHHHHHHHhhc-CccHHH-HHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHH
Q 009471          374 ---PLPQESAVGALRNLVG-SVSQEV-LISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLL  446 (534)
Q Consensus       374 ---~~~~~~a~~aL~~La~-~~~~~~-l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~L  446 (534)
                         ++....++++|.||.. +..... +.+.+++|.|...|..+  .+++.-+++..++.++.+++....+.+.|.++.|
T Consensus       502 ~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L  581 (708)
T PF05804_consen  502 GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTL  581 (708)
T ss_pred             CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence               1234568888888886 333344 44689999999999765  3689999999999999999999999999999999


Q ss_pred             HHhhcC--CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHHhh
Q 009471          447 IKLLEA--KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLER  524 (534)
Q Consensus       447 v~ll~~--~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l~~  524 (534)
                      +.++.+  .+.+..-..+.+++.+..+.+.++.++.+.+.+..|+.++++. +..+++.|-.+|--++...+++.+++..
T Consensus       582 i~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~-N~~ir~~~d~~Ldii~e~d~~w~~ri~~  660 (708)
T PF05804_consen  582 IELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDK-NAEIRKVCDNALDIIAEYDEEWAERIRR  660 (708)
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCHHHHHHhhH
Confidence            999974  4688889999999999999999999999888999999999997 5589999999999999999999999988


Q ss_pred             cccc
Q 009471          525 GRLR  528 (534)
Q Consensus       525 ~~~~  528 (534)
                      .||+
T Consensus       661 ~kF~  664 (708)
T PF05804_consen  661 EKFR  664 (708)
T ss_pred             HHHH
Confidence            8775

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=7.6e-20  Score=194.80  Aligned_cols=364  Identities=18%  Similarity=0.187  Sum_probs=293.0

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCC
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTAT---SPRIREKTVTVICSLAESG  227 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~~~  227 (534)
                      ....+.+++..|-.+ ...|.++...+.+|+. +|+|...++ .+..+.+|.+.|+..   +.++....+.++..++...
T Consensus       121 ~~~~~d~yiE~lYe~-~~ek~~~~~~il~La~-~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~  198 (708)
T PF05804_consen  121 SINDLDEYIELLYED-IPEKIRGTSLILQLAR-NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS  198 (708)
T ss_pred             CHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhC-CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence            345577777777644 5668889999999987 455655555 456788999999653   4777778888888888777


Q ss_pred             chhHHHHhcCCHHHHHHHHccC-----------------------------------------CHHHHHHHHHHHHHhhc
Q 009471          228 SCENWLVSEGVLPPLIRLVESG-----------------------------------------STVGKEKATISLQRLSM  266 (534)
Q Consensus       228 ~~~~~l~~~g~i~~Lv~lL~~~-----------------------------------------~~~~~~~A~~~L~~Ls~  266 (534)
                      +....+.+..+-...+++++.+                                         ...+...+...|.||+.
T Consensus       199 ~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe  278 (708)
T PF05804_consen  199 QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAE  278 (708)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666665555444444444210                                         11233456678999999


Q ss_pred             ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471          267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (534)
Q Consensus       267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~  346 (534)
                      ++.+...+...|+++.|+++|..++.++...+...|.+|+...+++..|.+.|+++.|.+++.+++. ..+..++.+|.|
T Consensus       279 d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~-~l~~~aLrlL~N  357 (708)
T PF05804_consen  279 DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE-DLVNVALRLLFN  357 (708)
T ss_pred             ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998886 899999999999


Q ss_pred             HccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHH
Q 009471          347 LTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASAL  424 (534)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL  424 (534)
                      |+. ++..|..+++.|.+|.|+.++.++..+..++.+|.+++. ..++..+..++.++.+++++-+ +++.++..++..+
T Consensus       358 LSf-d~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~  436 (708)
T PF05804_consen  358 LSF-DPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL  436 (708)
T ss_pred             hCc-CHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence            998 678899999999999999999998899999999999999 6677777788999999998754 5677888899999


Q ss_pred             HHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHH
Q 009471          425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA  504 (534)
Q Consensus       425 ~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a  504 (534)
                      .|++.++.+.+.+.+.|+++.|++..-....   ...+..+.|++.++++.+..+.  +.+..|+..+..+++++..-.+
T Consensus       437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~  511 (708)
T PF05804_consen  437 INLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVEC  511 (708)
T ss_pred             HHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHH
Confidence            9999999999999998999999988753322   2345689999988755555554  4788899998887677899999


Q ss_pred             HHHHHhhchhHHHHHHHHhh
Q 009471          505 VACLASLSPSARKLLERLER  524 (534)
Q Consensus       505 ~~~L~~L~~~~k~~~~~l~~  524 (534)
                      +.+|.||+.....+.+-+..
T Consensus       512 LGiLaNL~~~~ld~~~ll~~  531 (708)
T PF05804_consen  512 LGILANLTIPDLDWAQLLQE  531 (708)
T ss_pred             HHHHHhcccCCcCHHHHHHh
Confidence            99999998764444444433

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=7.2e-19  Score=164.99  Aligned_cols=313  Identities=18%  Similarity=0.222  Sum_probs=264.2

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHH
Q 009471          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVSEGVLP  240 (534)
Q Consensus       164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~  240 (534)
                      .+++.....+++.+|..+....|    .+++..+...++.+|..  ++.++....+..+..-+...+ +|..+++.++++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            46777788899999999998777    45677889999998865  457888888888888877655 999999999999


Q ss_pred             HHHHHHccC-CHHHHHHHHHHHHHhhcChh----------hHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCC
Q 009471          241 PLIRLVESG-STVGKEKATISLQRLSMSAE----------MARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       241 ~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~----------~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~  308 (534)
                      .+...|... ...+.+..+++++.|..+++          .++.|++.|+...|++.++. -+|.+....+.+|..|+..
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            999777654 44577889999999987765          45788899999999999875 3789999999999999999


Q ss_pred             chHHHHHHhhCcHHHHHHHhhcCCChhHH---HHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh----cCCchHHHHH
Q 009471          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSK---EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAV  381 (534)
Q Consensus       309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~---~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L----~~~~~~~~a~  381 (534)
                      ++.|+.+.|.|++..++.++.+.+....+   ..++..|+.|+. +++++..+++.||.+.++.++    ++|.+-+.++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            99999999999999999999875443444   567788888885 788899999999999999876    3477888889


Q ss_pred             HHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCC--HHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhcCCChH
Q 009471          382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNS  456 (534)
Q Consensus       382 ~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~  456 (534)
                      .++.-||.  ++....+++.|.-...++.++...  ..+|++|+++++|++ ++.++++.+...| ++.|+....+.++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~t  430 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHET  430 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCcc
Confidence            99999986  788889999999999999997665  589999999999998 4578888777765 99999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcchHHHHhhC
Q 009471          457 VREVAAQAISSLVTLPQNCREVKRDD  482 (534)
Q Consensus       457 v~~~A~~aL~~L~~~~~~~~~~~~~~  482 (534)
                      ++..|-.+|..|..+..++++-....
T Consensus       431 ce~~akaALRDLGc~v~lre~wtg~~  456 (461)
T KOG4199|consen  431 CEAAAKAALRDLGCDVYLREEWTGAE  456 (461)
T ss_pred             HHHHHHHHHHhcCcchhhHHHhcccc
Confidence            99999999999998888887765433

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.85  E-value=2.6e-19  Score=186.34  Aligned_cols=359  Identities=20%  Similarity=0.223  Sum_probs=283.7

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC---c
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG---S  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~---~  228 (534)
                      ....+++.+.+|.+.++..+..|...+..++..+.+.+..+.+.|+|+.|+.+|++.+.+++..|+.+|.||....   +
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            4557899999999999999999999999999999999999999999999999999999999999999999998754   3


Q ss_pred             hhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc--------------CChH
Q 009471          229 CENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--------------GDSV  293 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~--------------~~~~  293 (534)
                      ++-.+.+.++++.++++|+. .|.++++.+..+||||+.++..+..++. .++..|..-+-.              .+..
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            88999999999999999997 6999999999999999999776666553 333444332211              1245


Q ss_pred             HHHHHHHHHHHccC-CchHHHHHHh-hCcHHHHHHHhhc-----CCChhHHHHHHHHHHHHccCCh-----HHHHHHH--
Q 009471          294 SQAAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDC-----GILLGSKEYAAECLQNLTASNE-----NLRRSVV--  359 (534)
Q Consensus       294 ~~~~a~~aL~nLa~-~~~~~~~i~e-~g~i~~L~~ll~~-----~~~~~v~~~a~~~L~~La~~~~-----~~~~~i~--  359 (534)
                      +-..+.++|+|++. +.+.|+.|.+ .|.|..|+..++.     ..+....++|+..|.|+...-+     ..+....  
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            66889999999998 6699999998 8999999988862     2222679999999999987321     0110000  


Q ss_pred             ----------------------------------------------hcCChHHHHHhh---cCCchHHHHHHHHHHhhcC
Q 009471          360 ----------------------------------------------SEGGIRSLLAYL---DGPLPQESAVGALRNLVGS  390 (534)
Q Consensus       360 ----------------------------------------------~~g~l~~L~~~L---~~~~~~~~a~~aL~~La~~  390 (534)
                                                                    +..++..-+.+|   .++.+.+.+.++|.|++..
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                          011133323333   2367889999999999971


Q ss_pred             ------ccHHHH-HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC------ChHH
Q 009471          391 ------VSQEVL-ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK------PNSV  457 (534)
Q Consensus       391 ------~~~~~l-~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~------~~~v  457 (534)
                            ..+..+ ....+++.++++|+.++..|...++.+|.||+.+..++..|. .++++.|++.+...      +.++
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHH
Confidence                  112233 567889999999999999999999999999999999999997 67899999999732      3788


Q ss_pred             HHHHHHHHHHhc-CCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          458 REVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       458 ~~~A~~aL~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      ...++..|.++. ....|.+.+.. .++++.|+-+..+..++..-++|...|-.|=.
T Consensus       629 v~~vc~tl~niv~~~~~nAkdl~~-~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLNAKDLLE-IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHHHh-ccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            899999999999 66788888886 68999999999886544566677666665543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.80  E-value=9.8e-18  Score=174.63  Aligned_cols=330  Identities=20%  Similarity=0.238  Sum_probs=262.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC---hhhHHH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS---AEMARA  273 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~---~~~~~~  273 (534)
                      ++..+..|.+.++.+|-.|+.-+..++..+. .|..+.+.|+|+.|+.+|++.+.+++..|+++|.||...   ++++-.
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            6777888999999999999999999998765 888999999999999999999999999999999999754   457889


Q ss_pred             HHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh---c----C--C----ChhHHHH
Q 009471          274 IVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---C----G--I----LLGSKEY  339 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~---~----~--~----~~~v~~~  339 (534)
                      +.+.+||+.++++++. .|.++++.+.++||||+..+..+..++.. .+..|.+-+-   +    +  .    ...+-.+
T Consensus       315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n  393 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN  393 (717)
T ss_pred             hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence            9999999999999986 79999999999999999998888877764 3555554442   1    1  1    1256789


Q ss_pred             HHHHHHHHccCChHHHHHHHh-cCChHHHHHhhcC--------CchHHHHHHHHHHhhcC-c--cH--------------
Q 009471          340 AAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--------PLPQESAVGALRNLVGS-V--SQ--------------  393 (534)
Q Consensus       340 a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L~~--------~~~~~~a~~aL~~La~~-~--~~--------------  393 (534)
                      +..||+|++......|+.+.+ .|.|+.|+.++++        ....++|+..++||... +  .+              
T Consensus       394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~  473 (717)
T KOG1048|consen  394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP  473 (717)
T ss_pred             hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence            999999999977888888874 6889999988853        45689999999999751 0  00              


Q ss_pred             ----------------HH----------------------HHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC----
Q 009471          394 ----------------EV----------------------LISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTS----  430 (534)
Q Consensus       394 ----------------~~----------------------l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~----  430 (534)
                                      ..                      +....++..-..+| .+.++.+.+.++.+|-|++..    
T Consensus       474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~  553 (717)
T KOG1048|consen  474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW  553 (717)
T ss_pred             cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence                            00                      01112233334444 456789999999999999854    


Q ss_pred             -hhHHHHH-HhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCc-----hhHHHH
Q 009471          431 -AEMKKLV-GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKY  503 (534)
Q Consensus       431 -~~~~~~i-~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~k~~  503 (534)
                       ...+..+ ..+.+.+.|+++++.++..+...++.+|.||+.+..|++.+.+  ..++.|++.|....+     ++....
T Consensus       554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHH
Confidence             3455555 6778999999999999999999999999999999999887774  899999999976533     456677


Q ss_pred             HHHHHHhhchh----HHHHHHHHhhcccccc
Q 009471          504 AVACLASLSPS----ARKLLERLERGRLRSF  530 (534)
Q Consensus       504 a~~~L~~L~~~----~k~~~~~l~~~~~~~~  530 (534)
                      +..+|.++...    ||.+++.=+.++++-|
T Consensus       632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I  662 (717)
T KOG1048|consen  632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLI  662 (717)
T ss_pred             HHHhHHHHHHHhHHHHHHHHhccChHHHHHH
Confidence            88888898855    7777766556665544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.76  E-value=4.9e-15  Score=156.36  Aligned_cols=349  Identities=17%  Similarity=0.204  Sum_probs=279.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcC
Q 009471          159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEG  237 (534)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g  237 (534)
                      ++..|++.+.+....++..|..++...+.  ..+ ..+..+.|...|.++++.+|..++..|.++..+++ ....+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSP--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            88889988888888888888888764332  122 44788999999999999999999999999998776 466777889


Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHH
Q 009471          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLA  316 (534)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~  316 (534)
                      +++.++..+.+++..+...|+.+|.+++.++.....+...+++..|..++...++.+|..++.++.+++.. ++....+.
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~  199 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV  199 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999988888888888899999999988899999999999999875 47777778


Q ss_pred             hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----Cc----hHHHHHHHHHHhh
Q 009471          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PL----PQESAVGALRNLV  388 (534)
Q Consensus       317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~----~~~~a~~aL~~La  388 (534)
                      +.|+++.++..+.+++. -++.+++++|..++. .++..+.+.+.|+++.|..++.+    |.    .....+...++++
T Consensus       200 ~sgll~~ll~eL~~dDi-Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la  277 (503)
T PF10508_consen  200 NSGLLDLLLKELDSDDI-LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA  277 (503)
T ss_pred             hccHHHHHHHHhcCccH-HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence            89999999999998654 689999999999999 67778899999999999999965    31    1234457777777


Q ss_pred             cCccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHH-HhcC-----chHHHHHhhcCCChHHHHH
Q 009471          389 GSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLV-GEAG-----CTPLLIKLLEAKPNSVREV  460 (534)
Q Consensus       389 ~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i-~~~g-----~v~~Lv~ll~~~~~~v~~~  460 (534)
                      .. .+..+.+  ..++..+.+++.+.++..+..|..+++.++.+.+.+..+ ...|     .+..+-....++..+++.+
T Consensus       278 ~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r  356 (503)
T PF10508_consen  278 RV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR  356 (503)
T ss_pred             hc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence            63 2233332  456778888889999999999999999999999988888 4433     3444444455777899999


Q ss_pred             HHHHHHHhcCCCcc--h-------HHHHh--hCCCHH-HHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          461 AAQAISSLVTLPQN--C-------REVKR--DDKSVP-NLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       461 A~~aL~~L~~~~~~--~-------~~~~~--~~~~v~-~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +..+|.++....+.  .       +....  ..+... .++.++... -+++|..+...|..|+..
T Consensus       357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcC
Confidence            99999999643322  1       11111  223444 666777665 348999999999999988

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=3.1e-14  Score=134.14  Aligned_cols=314  Identities=18%  Similarity=0.250  Sum_probs=248.5

Q ss_pred             cCCcHHHHHHHh---cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhh-cC
Q 009471          194 GRSNIAALVQLL---TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLS-MS  267 (534)
Q Consensus       194 ~~g~v~~Lv~lL---~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls-~~  267 (534)
                      +.|..+.++.++   .+++..+...++.+|..+....+   .+++..+...++.+|...  +.++.......+..-+ .+
T Consensus       102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h  178 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH  178 (461)
T ss_pred             cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence            445566555543   44567778888889888887664   567888999999999764  5556555566666654 45


Q ss_pred             hhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCch----------HHHHHHhhCcHHHHHHHhhcCCChhH
Q 009471          268 AEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPE----------VRQMLAEEGIVSVMIKLLDCGILLGS  336 (534)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~----------~~~~i~e~g~i~~L~~ll~~~~~~~v  336 (534)
                      .-+++.|.+.+..+.+...+. .+..++.+..+++++-|..+++          ..+.|..+|++..|++.+..+.++++
T Consensus       179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~  258 (461)
T KOG4199|consen  179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS  258 (461)
T ss_pred             HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence            667888999999999986665 4455678889999999887554          34677788999999999987766678


Q ss_pred             HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---Cc---hHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHH
Q 009471          337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PL---PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVL  409 (534)
Q Consensus       337 ~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~---~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL  409 (534)
                      ....+.+|..|+- .++..+.+.+.||+..|++++++   ..   ....++..|+.|+. ......+++.|+.+.++.++
T Consensus       259 L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~  337 (461)
T KOG4199|consen  259 LVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLA  337 (461)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHH
Confidence            8889999999997 56667799999999999999976   22   34678999999998 67788999999999999988


Q ss_pred             h--cCCHHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhcCC--ChHHHHHHHHHHHHhcCC-CcchHHHHhhCC
Q 009471          410 K--AGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQAISSLVTL-PQNCREVKRDDK  483 (534)
Q Consensus       410 ~--~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~  483 (534)
                      .  +.+|.|.++++.+++-++ +.+++...+++.|+-...++-++..  ...+|..|++++.|++.. .++++.++.  .
T Consensus       338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--~  415 (461)
T KOG4199|consen  338 LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--N  415 (461)
T ss_pred             HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--c
Confidence            3  567999999999999999 6799999999999999999999743  477899999999999966 455566554  7


Q ss_pred             CHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          484 SVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       484 ~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +++.|++.-..+ .++....+-.+|..|--+
T Consensus       416 GiE~Li~~A~~~-h~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  416 GIEKLIRTAKAN-HETCEAAAKAALRDLGCD  445 (461)
T ss_pred             cHHHHHHHHHhc-CccHHHHHHHHHHhcCcc
Confidence            889999888876 346777788888877654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.71  E-value=1.4e-15  Score=164.65  Aligned_cols=351  Identities=19%  Similarity=0.223  Sum_probs=267.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCCc----hh
Q 009471          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS---PRIREKTVTVICSLAESGS----CE  230 (534)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~---~~v~~~A~~~L~~La~~~~----~~  230 (534)
                      .++..+...|   +.+-...|..+.. +++....++..|.++.|+++|-.++   .+.+..|-.+|.+|....+    .|
T Consensus       201 sllsml~t~D---~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R  276 (2195)
T KOG2122|consen  201 SLLSMLGTDD---EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR  276 (2195)
T ss_pred             HHhhhcccCC---HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence            4444444444   4455667777765 4455567788899999999996654   6889999999999988664    23


Q ss_pred             HHHHhcCCHHHHHHHHc-------cC-------CHHHHH-HHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-----
Q 009471          231 NWLVSEGVLPPLIRLVE-------SG-------STVGKE-KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-----  290 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~-------~~-------~~~~~~-~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-----  290 (534)
                      ..+.-..++..+..+..       ..       ...-+. .|..+|..++++.+.+..+.+.|++.++-+++.-.     
T Consensus       277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhg  356 (2195)
T KOG2122|consen  277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHG  356 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            33322233333333221       11       122233 67788999999999999999999999998887521     


Q ss_pred             -------ChHHHHHHHHHHHHccCCc-hHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH-Hh
Q 009471          291 -------DSVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV-VS  360 (534)
Q Consensus       291 -------~~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i-~~  360 (534)
                             ...+|.++..+|.||..++ .++..+.. .|++.+++..|.+..+ ++..-.+.+|+||.-..+.+-..+ -+
T Consensus       357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE  435 (2195)
T KOG2122|consen  357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRE  435 (2195)
T ss_pred             CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHh
Confidence                   2357899999999999977 56665554 8999999999988876 788888899999998555444444 46


Q ss_pred             cCChHHHHHh-hcC--CchHHHHHHHHHHhhc--CccHHHHHh-cCcHHHHHHHHhcC----CHHHHHHHHHHHHHhcCC
Q 009471          361 EGGIRSLLAY-LDG--PLPQESAVGALRNLVG--SVSQEVLIS-LGFFPRLVHVLKAG----SLGAQQAAASALCRVCTS  430 (534)
Q Consensus       361 ~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~--~~~~~~l~~-~~~i~~Lv~lL~~~----~~~v~~~A~~aL~~la~~  430 (534)
                      .|.+..|..+ +++  .......+.+||||+.  .++...|.. .|.+..|+.+|.-.    ...+.+.|-++|.|++..
T Consensus       436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~  515 (2195)
T KOG2122|consen  436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL  515 (2195)
T ss_pred             hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence            7888888886 444  5678899999999998  566666655 78899999999533    457889999999998754


Q ss_pred             ----hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHH
Q 009471          431 ----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA  506 (534)
Q Consensus       431 ----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~  506 (534)
                          +++|+.+.+..++..|++.|++.+..+.-.++++||||....+.-.+++.+.|.|+.|..++++. ...+-..++.
T Consensus       516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaa  594 (2195)
T KOG2122|consen  516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAA  594 (2195)
T ss_pred             hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHH
Confidence                78999999999999999999999999999999999999955444455556689999999999998 4478889999


Q ss_pred             HHHhhchh
Q 009471          507 CLASLSPS  514 (534)
Q Consensus       507 ~L~~L~~~  514 (534)
                      +|.||...
T Consensus       595 ALrNLln~  602 (2195)
T KOG2122|consen  595 ALRNLLNF  602 (2195)
T ss_pred             HHHHHhcC
Confidence            99999765

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.70  E-value=9.5e-14  Score=146.64  Aligned_cols=361  Identities=18%  Similarity=0.170  Sum_probs=275.8

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      ...+.+.+...|.+.++.+|.-++..+..++.+++.....+.+.+.++.++.++.+++..+...|+.+|..++..+...+
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~  154 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE  154 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence            45566777888899999999999999999998888777778888999999999999999999999999999999888777


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE  310 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~  310 (534)
                      .++..+.+..|..++...+..++.++..++.+++.. ++....+...|.++.++..+.++|.-++..++.+|..|+..++
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~  234 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH  234 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence            888999999999999998888999999999999866 5556667778999999999999999999999999999999889


Q ss_pred             HHHHHHhhCcHHHHHHHhhcCCCh----hH-HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHH
Q 009471          311 VRQMLAEEGIVSVMIKLLDCGILL----GS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA  383 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~~~~~~----~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~a  383 (534)
                      +...+.+.|+++.+.+++.+....    .+ ....+...++++..++..- .-.-...+..+.+++++  +..+..|+.+
T Consensus       235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v-~~~~p~~~~~l~~~~~s~d~~~~~~A~dt  313 (503)
T PF10508_consen  235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV-LELYPAFLERLFSMLESQDPTIREVAFDT  313 (503)
T ss_pred             HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            999999999999999999644321    12 2233466677776422211 11112334455566554  6678999999


Q ss_pred             HHHhhc-CccHHHH-Hhc-C----cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--h-------hHHHHHH---hcCchH
Q 009471          384 LRNLVG-SVSQEVL-ISL-G----FFPRLVHVLKAGSLGAQQAAASALCRVCTS--A-------EMKKLVG---EAGCTP  444 (534)
Q Consensus       384 L~~La~-~~~~~~l-~~~-~----~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~-------~~~~~i~---~~g~v~  444 (534)
                      ++.++. .+....+ ... +    ++..+.....++..+++..+..++.++-..  +       ...+.+.   ..+...
T Consensus       314 lg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~  393 (503)
T PF10508_consen  314 LGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLS  393 (503)
T ss_pred             HHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchH
Confidence            999998 4555555 332 2    344555555677889999999999999432  2       1122222   223444


Q ss_pred             -HHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHh-hcCCCC-chhHHHHHHHHHHhhch
Q 009471          445 -LLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ-LLDPSP-QNTAKKYAVACLASLSP  513 (534)
Q Consensus       445 -~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~-lL~~~~-~~~~k~~a~~~L~~L~~  513 (534)
                       .++.+++.+-+++|..+...|..++.++.+.+.+....|.++.|+. -.+++. ..+.|...+.+|.+-..
T Consensus       394 ~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~  465 (503)
T PF10508_consen  394 NLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST  465 (503)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence             7788888888999999999999999999999999988888777763 333332 23355566666664433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.8e-14  Score=141.33  Aligned_cols=373  Identities=16%  Similarity=0.157  Sum_probs=285.6

Q ss_pred             hhchHHHHHHHHhcC--CHHH-HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471          152 THGNTRELLARLQIG--HLEA-KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~--~~~~-~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (534)
                      ....+..+...++.-  ..+. .+-|..-|.+++. +-+....++....|..||+.|+.++.++.......|-.|+-..+
T Consensus       258 Lk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e  336 (791)
T KOG1222|consen  258 LKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE  336 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc
Confidence            344455565555432  2233 3445556677765 34444566677899999999999999999999999999999999


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                      ++..+.+.|++..|+++....+++++......|.|++.+...+..+++.|.+|.|+.++.+.+.  ...|+..|..++.+
T Consensus       337 NK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d  414 (791)
T KOG1222|consen  337 NKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD  414 (791)
T ss_pred             chHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999976443  34578889999999


Q ss_pred             chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCC-------------------------
Q 009471          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-------------------------  363 (534)
Q Consensus       309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~-------------------------  363 (534)
                      ++.+..+....+|+.+++.+-++...++-...+..--|++. +..+.+.+.+..+                         
T Consensus       415 D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSq  493 (791)
T KOG1222|consen  415 DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQ  493 (791)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhh
Confidence            99999999999999999988766654444444433345554 1111111112111                         


Q ss_pred             ------------hHHHHHhhcC---CchHHHHHHHHHHhhcC--ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHH
Q 009471          364 ------------IRSLLAYLDG---PLPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASAL  424 (534)
Q Consensus       364 ------------l~~L~~~L~~---~~~~~~a~~aL~~La~~--~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL  424 (534)
                                  +..|..++.+   ...-..|+++++||..+  +-...+.+...+|.+-..|+.+  ..+++-....++
T Consensus       494 Heg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~  573 (791)
T KOG1222|consen  494 HEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIAC  573 (791)
T ss_pred             ccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHh
Confidence                        2222222322   22456788888888873  3445566789999999999765  357888888899


Q ss_pred             HHhcCChhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHH
Q 009471          425 CRVCTSAEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKK  502 (534)
Q Consensus       425 ~~la~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~  502 (534)
                      +.+++...+...+..+|.++.|++++++  .+.+.......+...+..+...++..+++...-..|+.+++.. +.++|+
T Consensus       574 GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDk-N~eiRk  652 (791)
T KOG1222|consen  574 GTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDK-NAEIRK  652 (791)
T ss_pred             hhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcc-cHHHHH
Confidence            9999999999999999999999999984  3455556666667777777777777888777778899999987 558999


Q ss_pred             HHHHHHHhhchhHHHHHHHHhhccccc
Q 009471          503 YAVACLASLSPSARKLLERLERGRLRS  529 (534)
Q Consensus       503 ~a~~~L~~L~~~~k~~~~~l~~~~~~~  529 (534)
                      -+-.+|--++.+.+++.+++..+|||-
T Consensus       653 VCDn~LdIiae~d~EWAKrI~~EkFrw  679 (791)
T KOG1222|consen  653 VCDNALDIIAEHDKEWAKRIAGEKFRW  679 (791)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhccc
Confidence            999999999999999999999999873

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.69  E-value=2.2e-15  Score=163.19  Aligned_cols=317  Identities=18%  Similarity=0.197  Sum_probs=250.0

Q ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHH----------HHHhcCC------C-HHHHH-
Q 009471          156 TRELLARLQIG---HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAAL----------VQLLTAT------S-PRIRE-  214 (534)
Q Consensus       156 i~~Ll~~L~~~---~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~L----------v~lL~~~------~-~~v~~-  214 (534)
                      ++.|+++|+-.   +.+.+..|-.+|.++....++....=.+...+..|          -.++...      + .+=+. 
T Consensus       237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lc  316 (2195)
T KOG2122|consen  237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLC  316 (2195)
T ss_pred             hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhH
Confidence            56677777643   45678889999999987655433211111222221          1222221      1 22333 


Q ss_pred             HHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc------------CCHHHHHHHHHHHHHhhcChhh-HHHHHh-CCCh
Q 009471          215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVES------------GSTVGKEKATISLQRLSMSAEM-ARAIVG-HGGV  280 (534)
Q Consensus       215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~------------~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~-~g~i  280 (534)
                      .|+.+|..++.+++.|+.+.+.|++..+-+++.-            ....++.+|..+|.||+..+.+ +..++. .|.+
T Consensus       317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM  396 (2195)
T KOG2122|consen  317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM  396 (2195)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence            6778888899999999999999999999998752            1345899999999999987654 666775 8899


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH
Q 009471          281 RPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV  358 (534)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i  358 (534)
                      +.+|..|.+...++....+.+|+||+...  ..++.+.+.|-+..|+...-....+......+.+|+||+.+...++..|
T Consensus       397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i  476 (2195)
T KOG2122|consen  397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI  476 (2195)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence            99999999888889999999999999844  5677777899999988876433333678899999999999888888888


Q ss_pred             Hh-cCChHHHHHhhcC------CchHHHHHHHHHHhhc-----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009471          359 VS-EGGIRSLLAYLDG------PLPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR  426 (534)
Q Consensus       359 ~~-~g~l~~L~~~L~~------~~~~~~a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~  426 (534)
                      .. .|.+.-|+..|..      -.+-+.+-++|+|.+.     .+.++.+.+++.+..|+..|++.+-.+.-++|++|+|
T Consensus       477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN  556 (2195)
T KOG2122|consen  477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN  556 (2195)
T ss_pred             hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence            74 6778888888854      2367899999999987     3455677789999999999999999999999999999


Q ss_pred             hc-CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471          427 VC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (534)
Q Consensus       427 la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~  472 (534)
                      |+ ++++.++++++.|.++.|..++++++..+.+-++.+|.||....
T Consensus       557 LSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  557 LSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            98 67999999999999999999999999999999999999997654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.2e-13  Score=149.29  Aligned_cols=454  Identities=17%  Similarity=0.185  Sum_probs=301.8

Q ss_pred             chhhHHHHHHhcccccccccc-CCCCCCCchhHHHHHHHHHHHHHHHH----HHH----HHhcCCCCCCcchhhhhhHhh
Q 009471           42 GRWKMIISKLEQIPSHLSDLS-SHPCFSKNALCREQLQAVSKTLKEAI----ELA----ELCVKEKYEGKLRMQSDLDAL  112 (534)
Q Consensus        42 ~~~~~i~~k~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~----~~c~~~~~~~~l~~~s~~~~~  112 (534)
                      -.=..||.|++++.+.+..-- +. .||      ++++.+++++.+..    +.+    ..|  +.+-| .+.+.++|.+
T Consensus        91 E~~~~vr~k~~dviAeia~~~l~e-~WP------ell~~L~q~~~S~~~~~rE~al~il~s~--~~~~~-~~~~~~~~~l  160 (1075)
T KOG2171|consen   91 ETEPSVRHKLADVIAEIARNDLPE-KWP------ELLQFLFQSTKSPNPSLRESALLILSSL--PETFG-NTLQPHLDDL  160 (1075)
T ss_pred             ccchHHHHHHHHHHHHHHHhcccc-chH------HHHHHHHHHhcCCCcchhHHHHHHHHhh--hhhhc-cccchhHHHH
Confidence            334578999999999886544 33 699      88888888876432    111    111  01123 3445577778


Q ss_pred             hchhhhhhhchhhHHhhCCCCCCCcccccCCCCchhhhhhhchHHHHHHHH----hcCCHHHHHHHHHHHHHHhhcChHh
Q 009471          113 SGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARL----QIGHLEAKHKALDSLVEAMKEDEKN  188 (534)
Q Consensus       113 ~~~l~~~~~~~~~~~~~g~l~~~~~~v~~~p~~~a~~~~~~~~i~~Ll~~L----~~~~~~~~~~A~~~L~~l~~~~~~~  188 (534)
                      ...|...+.|.+.-+|+-.++.-.+.....+........++..+|.++..+    +.|+.+.-..++..|.+++...++.
T Consensus       161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            888888887777666654442222222222222233344566777777655    4677777889999999999888877


Q ss_pred             HHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCc--hhH-HHHhcCCHHHHHHHHccCC-------------
Q 009471          189 VLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS--CEN-WLVSEGVLPPLIRLVESGS-------------  250 (534)
Q Consensus       189 ~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~--~~~-~l~~~g~i~~Lv~lL~~~~-------------  250 (534)
                      .+..++ ..+...++..++.+  ..+|..|+.+|..+++..+  +|. ...-...++.++.++.+..             
T Consensus       241 l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~de  319 (1075)
T KOG2171|consen  241 LRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDE  319 (1075)
T ss_pred             HHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccc
Confidence            666554 56777777777764  8999999999999999865  221 1122235566666654321             


Q ss_pred             ---HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHH
Q 009471          251 ---TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMI  325 (534)
Q Consensus       251 ---~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~  325 (534)
                         ..-...|..+|-.++.+-..+..+  .-.++.+-.++++.++.-|.+++.+|..++.+..  +.|..  ..+++.++
T Consensus       320 d~~~~~~~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~--~~m~~~l~~Il~~Vl  395 (1075)
T KOG2171|consen  320 DDEETPYRAAEQALDRLALHLGGKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGCS--DVMIGNLPKILPIVL  395 (1075)
T ss_pred             ccccCcHHHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHH
Confidence               113456777777777653322211  1124677788999999999999999999987642  22222  67888899


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHHHh--cC
Q 009471          326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLIS--LG  400 (534)
Q Consensus       326 ~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l~~--~~  400 (534)
                      ..+.++++ .||+.|+.++++++.+....-+...++..++.|+..+++   +.++.+|+.++.|+........+..  .+
T Consensus       396 ~~l~Dphp-rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~  474 (1075)
T KOG2171|consen  396 NGLNDPHP-RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG  474 (1075)
T ss_pred             hhcCCCCH-HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            99999998 899999999999998766555566777888899999977   5689999999999987433333322  34


Q ss_pred             cHH-HHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCC----hHHHHHHHHHHHHhcCCCc
Q 009471          401 FFP-RLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKP----NSVREVAAQAISSLVTLPQ  473 (534)
Q Consensus       401 ~i~-~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~----~~v~~~A~~aL~~L~~~~~  473 (534)
                      ++. .+..+++++.+.+++.++.+|+..|..  .++.+++  ...+|.|.+.++..+    ..+|....+++.-++ ...
T Consensus       475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~-~AV  551 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA-RAV  551 (1075)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH-HHh
Confidence            555 344455788899999999999999854  5666776  557999999998544    456777778887664 444


Q ss_pred             chHHHHhhCC-CHHHHHhhcCC--CCchhHHHHHHHHHHhhchh
Q 009471          474 NCREVKRDDK-SVPNLVQLLDP--SPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       474 ~~~~~~~~~~-~v~~Lv~lL~~--~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +++.|..... .+..+..+-.+  +.+...+.|-.....++|+.
T Consensus       552 Gke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i  595 (1075)
T KOG2171|consen  552 GKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI  595 (1075)
T ss_pred             hhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH
Confidence            5455544322 22222222111  12234678888888888766

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.59  E-value=3.8e-13  Score=130.65  Aligned_cols=319  Identities=11%  Similarity=0.074  Sum_probs=243.3

Q ss_pred             hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHh
Q 009471          193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRL  264 (534)
Q Consensus       193 ~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~L  264 (534)
                      ++.+.++.|.+..++++.++-++..++|+|+|.++ ++|..+.+.|+-..++++|+..       +.+....++..|.|-
T Consensus        84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny  163 (604)
T KOG4500|consen   84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY  163 (604)
T ss_pred             hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence            45578888999999999999999999999999977 4999999999988888888752       234555677778887


Q ss_pred             hcC-hhhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHccCCc-h-HHHHHHhhCcHHHHHHHhhcCCChhHHHH
Q 009471          265 SMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVP-E-VRQMLAEEGIVSVMIKLLDCGILLGSKEY  339 (534)
Q Consensus       265 s~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~-~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~  339 (534)
                      ... ++.+....+.|.++.|...+.-  .+....+.......||.+.. + ......+......+++++.+...++..+.
T Consensus       164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM  243 (604)
T KOG4500|consen  164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM  243 (604)
T ss_pred             hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence            655 5557788899999999888653  23444455555555655422 2 34445567788889999976665578999


Q ss_pred             HHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-Cc--hHHH-------HHHHHHHhhc-CccHHHHHhcC-cHHHHHH
Q 009471          340 AAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PL--PQES-------AVGALRNLVG-SVSQEVLISLG-FFPRLVH  407 (534)
Q Consensus       340 a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~--~~~~-------a~~aL~~La~-~~~~~~l~~~~-~i~~Lv~  407 (534)
                      +...+...+. ++..+-.+.+.|.++.+++++++ +.  -.+.       ++....-|.. .++-+.+.+.+ ++..++.
T Consensus       244 ~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s  322 (604)
T KOG4500|consen  244 IFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES  322 (604)
T ss_pred             HHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence            9999998886 66777788899999999999876 21  1222       2333333333 44555666666 8999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-----CCChHHHHHHHHHHHHhcCCCcchHHHHhhC
Q 009471          408 VLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTLPQNCREVKRDD  482 (534)
Q Consensus       408 lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~  482 (534)
                      .+++.+...+..+.-+|+|+++.++++..+.+.|++..|++++.     +++.+++..++.+|.+++--.+|+..+.. .
T Consensus       323 w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-a  401 (604)
T KOG4500|consen  323 WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-A  401 (604)
T ss_pred             HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-c
Confidence            99999999999999999999999999999999999999999985     45688899999999999988899888887 6


Q ss_pred             CCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          483 KSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       483 ~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      |.+..++..++... +.+...-...+..+-.+
T Consensus       402 GvteaIL~~lk~~~-ppv~fkllgTlrM~~d~  432 (604)
T KOG4500|consen  402 GVTEAILLQLKLAS-PPVTFKLLGTLRMIRDS  432 (604)
T ss_pred             chHHHHHHHHHhcC-CcchHHHHHHHHHHHhc
Confidence            88888888887652 24555555566555555

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.57  E-value=3.9e-13  Score=127.89  Aligned_cols=192  Identities=21%  Similarity=0.244  Sum_probs=164.8

Q ss_pred             HhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471          192 VMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM  270 (534)
Q Consensus       192 i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~  270 (534)
                      +.+.+.++.|+.+|+.. ++.+++.+..++++.+.++.+++.+.+.|+++.+..+|.++++.+++.|.++|.|++.+.++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            35667899999999964 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471          271 ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La  348 (534)
                      +..+-.  .++.+++...+  -+..+|..++++|.||+..++.+..+..  .++.++.++..|+. .++.+++.+|.||+
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~-~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSE-KTKVQVLKVLVNLS  162 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCCh-HHHHHHHHHHHHhc
Confidence            887643  35555554333  3778999999999999988877777754  69999999999997 89999999999999


Q ss_pred             cCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc
Q 009471          349 ASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG  389 (534)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~  389 (534)
                      . ++...+.++..+++..++.+++.   .+....++..+.|+..
T Consensus       163 ~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  163 E-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             c-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            8 56666678888899999999976   4567788888888865

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.56  E-value=9.4e-13  Score=127.92  Aligned_cols=365  Identities=15%  Similarity=0.085  Sum_probs=268.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC----CC---HHHHHHHHHHHHHhhcCCc-h
Q 009471          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA----TS---PRIREKTVTVICSLAESGS-C  229 (534)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~----~~---~~v~~~A~~~L~~La~~~~-~  229 (534)
                      .|.+...+.+.+.-.+..++|.+++.++.+++..+.+.||-..++++|+.    .+   .+.-..+...|.|..-+.+ .
T Consensus        91 ~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l  170 (604)
T KOG4500|consen   91 LLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSREL  170 (604)
T ss_pred             HHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHH
Confidence            33334456778999999999999999999999999999997777777764    22   3455566677777776654 8


Q ss_pred             hHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhc-ChhhHH-HHHhCCChHHHHHHHcc-CChHHHHHHHHHHHH
Q 009471          230 ENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSM-SAEMAR-AIVGHGGVRPLIEICQT-GDSVSQAAAACTLKN  304 (534)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~-~~~~~~-~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~n  304 (534)
                      +..+.+.|+++.|..++.-+  +....+.......+|.. ..++.. ...+......+++++.. -.++....+...|..
T Consensus       171 ~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~  250 (604)
T KOG4500|consen  171 RAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAK  250 (604)
T ss_pred             HHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHH
Confidence            89999999999999888654  55555555444444432 223322 23345556667777764 356778889999999


Q ss_pred             ccCCchHHHHHHhhCcHHHHHHHhhcCCChh-------HHHHHHHHHHHHccCChHHHHHHHhcC-ChHHHHHhhcC--C
Q 009471          305 ISAVPEVRQMLAEEGIVSVMIKLLDCGILLG-------SKEYAAECLQNLTASNENLRRSVVSEG-GIRSLLAYLDG--P  374 (534)
Q Consensus       305 La~~~~~~~~i~e~g~i~~L~~ll~~~~~~~-------v~~~a~~~L~~La~~~~~~~~~i~~~g-~l~~L~~~L~~--~  374 (534)
                      .+.++..+-.+++.|.+..++++++.-....       .-..++....-+..+++..+ .++..+ .++-+...+++  .
T Consensus       251 ~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~d~  329 (604)
T KOG4500|consen  251 AAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSDDS  329 (604)
T ss_pred             HhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCCch
Confidence            9999999999999999999999997622111       22334555555555666654 444444 67777777765  4


Q ss_pred             chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHH
Q 009471          375 LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK-----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIK  448 (534)
Q Consensus       375 ~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~  448 (534)
                      ..+..+.-+|+|+++ ....-.+++.+++..|+.++.     .++..+|..++.+|+|+.-..-++..+..+|..+.+..
T Consensus       330 ~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~  409 (604)
T KOG4500|consen  330 NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILL  409 (604)
T ss_pred             hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHH
Confidence            567888889999999 667788999999999999984     34678999999999999998888999999999999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh--HHHHHHHHh
Q 009471          449 LLEAKPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS--ARKLLERLE  523 (534)
Q Consensus       449 ll~~~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~--~k~~~~~l~  523 (534)
                      +++...|.++..-...+.-+....+ -..++.+.-..+..|+..-.+++-..+.......+.-+..+  .|++..-+.
T Consensus       410 ~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvp  487 (604)
T KOG4500|consen  410 QLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVP  487 (604)
T ss_pred             HHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcc
Confidence            9999889999999998888764444 45566665566777787777765444666677777777777  344444444

>PRK09687 putative lyase; Provisional

Probab=99.54  E-value=1.6e-12  Score=126.52  Aligned_cols=253  Identities=18%  Similarity=0.088  Sum_probs=197.1

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~  275 (534)
                      --++.|..+|.+++..+|..|+.+|..+..          ..+++.+..+++++++.++..|+++|..|...+....   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~---   89 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQD---   89 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchH---
Confidence            458899999999999999999999987753          2357888899999999999999999999976433211   


Q ss_pred             hCCChHHHHHH-HccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471          276 GHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (534)
Q Consensus       276 ~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~  354 (534)
                        ..++.|..+ +.++++.++..++.+|.++.......    ...++..+...+.+.+. .++..++.+|+.+..  +  
T Consensus        90 --~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~-~VR~~a~~aLg~~~~--~--  158 (280)
T PRK09687         90 --NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKST-NVRFAVAFALSVIND--E--  158 (280)
T ss_pred             --HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCH-HHHHHHHHHHhccCC--H--
Confidence              123777766 67889999999999999986532111    12345567677777776 899999999987653  2  


Q ss_pred             HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh
Q 009471          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE  432 (534)
Q Consensus       355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~  432 (534)
                             ..++.|+.++++  +.++..|+.+|+.+...       ....++.|+.++.+.+..|+..|+++|.++..   
T Consensus       159 -------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---  221 (280)
T PRK09687        159 -------AAIPLLINLLKDPNGDVRNWAAFALNSNKYD-------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---  221 (280)
T ss_pred             -------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC---
Confidence                   247889999976  67899999999998431       12467889999999999999999999998653   


Q ss_pred             HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471          433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (534)
Q Consensus       433 ~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~  509 (534)
                             ..++|.|++.+++++  ++..++.+|..+..           ...++.|.++++.+++..++..+..+|-
T Consensus       222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                   256999999998765  67889999999832           2568999999986656678888887764

>PRK09687 putative lyase; Provisional

Probab=99.51  E-value=7.2e-12  Score=121.90  Aligned_cols=252  Identities=18%  Similarity=0.149  Sum_probs=198.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .+..|+..|.+.+..++..|+..|..+-           +...++.+..+++++++.+|..|+++|+.+......     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            4788899999999999999999987763           124577788899999999999999999999764422     


Q ss_pred             hcCCHHHHHHH-HccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471          235 SEGVLPPLIRL-VESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (534)
Q Consensus       235 ~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (534)
                      ....++.|..+ +++.++.++..|+.+|.++.......    ....+..+...+.++++.+|..++.+|.++..      
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------  157 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------  157 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence            12347778776 67789999999999999986432211    01123567777888999999999999976542      


Q ss_pred             HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCc
Q 009471          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSV  391 (534)
Q Consensus       314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~  391 (534)
                          ..+++.|+.++.+.+. .++..|+.+|+.+...++.         .++.|+..+++  +.++..|+.+|+.+-.  
T Consensus       158 ----~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--  221 (280)
T PRK09687        158 ----EAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALRKD--  221 (280)
T ss_pred             ----HHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence                4478999999998887 8999999999999544442         36778888876  6799999999988653  


Q ss_pred             cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHH
Q 009471          392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISS  467 (534)
Q Consensus       392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~  467 (534)
                             ...++.|++.+++++  ++..++.+|+++...          ..+|.|.++++ +++..++..|.++|..
T Consensus       222 -------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        222 -------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             -------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                   357899999998876  677899999998753          46899999997 8899999999998853

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.46  E-value=2.8e-11  Score=136.88  Aligned_cols=273  Identities=21%  Similarity=0.151  Sum_probs=211.9

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .++.|+..|.+.++.+|..|+..|..+.           ..+.++.|+.+|+++++.+|..|+.+|..+....+      
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC------
Confidence            4567888888999999999998888763           23568899999999999999999999988854322      


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHH
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM  314 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (534)
                         ..+.+...|++.++.++..|+.+|..+...           ....|+..|.++++.+|..|+.+|..+..       
T Consensus       685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~~VR~~Av~aL~~~~~-------  743 (897)
T PRK13800        685 ---PAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDHRVRIEAVRALVSVDD-------  743 (897)
T ss_pred             ---chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence               135777889999999999999999887532           23457788999999999999999987532       


Q ss_pred             HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCcc
Q 009471          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVS  392 (534)
Q Consensus       315 i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~  392 (534)
                            .+.+..++.+++. .+|..++.+|..+.....         ..++.|..++++  +.+|..|+.+|+.+..+  
T Consensus       744 ------~~~l~~~l~D~~~-~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~--  805 (897)
T PRK13800        744 ------VESVAGAATDENR-EVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCP--  805 (897)
T ss_pred             ------cHHHHHHhcCCCH-HHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--
Confidence                  2346677888876 899999999999875322         226778888876  56899999999988652  


Q ss_pred             HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471          393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (534)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~  472 (534)
                            ...+..+...|.+.++.|+..|+.+|..+..          ...++.|+.++.+++..||..|..+|..+.. .
T Consensus       806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~  868 (897)
T PRK13800        806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-D  868 (897)
T ss_pred             ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-C
Confidence                  1134668888999999999999999998753          2457999999999999999999999998721 1


Q ss_pred             cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHh
Q 009471          473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS  510 (534)
Q Consensus       473 ~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~  510 (534)
                      +         ...+.|...++.+ +..++..|..+|.+
T Consensus       869 ~---------~a~~~L~~al~D~-d~~Vr~~A~~aL~~  896 (897)
T PRK13800        869 P---------AARDALTTALTDS-DADVRAYARRALAH  896 (897)
T ss_pred             H---------HHHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence            1         2345666777765 55799999988864

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.45  E-value=1.1e-10  Score=118.21  Aligned_cols=318  Identities=15%  Similarity=0.128  Sum_probs=235.6

Q ss_pred             hchHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcC-----CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471          153 HGNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-----SNIAALVQLLTATSPRIREKTVTVICSLAES  226 (534)
Q Consensus       153 ~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-----g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (534)
                      ..++..++..++ +.+++.....+.-+.+++.+++.....+.+.     +...+++.+|..+|..+...|..+|..+...
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            345666777775 4567778888888888888888766666653     5678888999999999999999999999765


Q ss_pred             Cchh-HHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHH
Q 009471          227 GSCE-NWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTL  302 (534)
Q Consensus       227 ~~~~-~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL  302 (534)
                      .... ......-.++.+...+++. +...+..++.+|..|...++.+..+.+.+|++.|+.+++..  +...+..++-++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            4311 1111111334555666654 56778889999999999999999999999999999999763  457789999999


Q ss_pred             HHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC------hHHHHHHHhcCChHHHHHhhcC---
Q 009471          303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN------ENLRRSVVSEGGIRSLLAYLDG---  373 (534)
Q Consensus       303 ~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~------~~~~~~i~~~g~l~~L~~~L~~---  373 (534)
                      |-|+..++....+.+.+.++.++++++....+.+.+-++.+|.|+...+      ......+++.|.. ++++.|..   
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk~  290 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRKY  290 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCCC
Confidence            9999988877777778999999999987776688999999999999843      1233455555554 45555432   


Q ss_pred             --CchH-------HHHHHHHHHhhc----------------C---------ccHHHHHhcC--cHHHHHHHHh-cCCHHH
Q 009471          374 --PLPQ-------ESAVGALRNLVG----------------S---------VSQEVLISLG--FFPRLVHVLK-AGSLGA  416 (534)
Q Consensus       374 --~~~~-------~~a~~aL~~La~----------------~---------~~~~~l~~~~--~i~~Lv~lL~-~~~~~v  416 (534)
                        +++.       +.--.-+..+++                +         ++...+-+.+  .+..|+++|. +.++.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence              2221       111122222221                0         2233454444  3788999994 667888


Q ss_pred             HHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          417 QQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       417 ~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ..-||.=|+.+++. |..+..+.+.|+=..+++++.+++++++..|+.++..|..+
T Consensus       371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            89999999999975 88999998899999999999999999999999999887543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1e-10  Score=115.36  Aligned_cols=363  Identities=15%  Similarity=0.157  Sum_probs=256.2

Q ss_pred             hhhhHhhhchhhhhhhchhhHHhhCCCCCCCcccccCCCCchh--hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 009471          106 QSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDA--EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMK  183 (534)
Q Consensus       106 ~s~~~~~~~~l~~~~~~~~~~~~~g~l~~~~~~v~~~p~~~a~--~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~  183 (534)
                      ..+.|.+..++...+..-..+++....     .+.-......-  +.-....|.-|+..|...+.+...-...-|..+.-
T Consensus       259 k~e~dr~~kklk~~~~KQeqLLrva~y-----lLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI  333 (791)
T KOG1222|consen  259 KEEIDRLNKKLKTAIRKQEQLLRVAVY-----LLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI  333 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence            456677777776666655555554321     11111111111  22234578888888888876666555555555543


Q ss_pred             cChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009471          184 EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR  263 (534)
Q Consensus       184 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~  263 (534)
                       -.+++..+.+.|.|+.|+++....+++++...+..+.+++.+...+..++..|.+|.+..+|.+...  ...|...|+.
T Consensus       334 -f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh  410 (791)
T KOG1222|consen  334 -FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH  410 (791)
T ss_pred             -hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence             3346667778899999999999999999999999999999999999999999999999999987643  4567889999


Q ss_pred             hhcChhhHHHHHhCCChHHHHHHHccC-ChHHH--------------------------------------HHHHHHHHH
Q 009471          264 LSMSAEMARAIVGHGGVRPLIEICQTG-DSVSQ--------------------------------------AAAACTLKN  304 (534)
Q Consensus       264 Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~--------------------------------------~~a~~aL~n  304 (534)
                      ++.+++.+..+....+|+.+++.+-.+ +.++-                                      ..-...++|
T Consensus       411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRn  490 (791)
T KOG1222|consen  411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRN  490 (791)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHH
Confidence            999988888787778888777654322 11110                                      123456677


Q ss_pred             ccCCch-HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHH
Q 009471          305 ISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQES  379 (534)
Q Consensus       305 La~~~~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~  379 (534)
                      ++..+. .+..+++  .+..|...+...++++....|+++++|++..+-.-...+-+...+|.+-+.|..    ++.+-.
T Consensus       491 iSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~  568 (791)
T KOG1222|consen  491 ISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQ  568 (791)
T ss_pred             hhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhH
Confidence            777653 4444444  255666666665554567778888888887555555555678889999888864    456666


Q ss_pred             HHHHHHHhhcC-ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhHHHHHHhcC-chHHHHHhhcCCCh
Q 009471          380 AVGALRNLVGS-VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAG-CTPLLIKLLEAKPN  455 (534)
Q Consensus       380 a~~aL~~La~~-~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~~~~~~i~~~g-~v~~Lv~ll~~~~~  455 (534)
                      .+-+++.++.. .+...+...++++.|+++|+..  +.+...+...+...+..++-.++.++... .-..|++++++++.
T Consensus       569 ~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~  648 (791)
T KOG1222|consen  569 IVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNA  648 (791)
T ss_pred             HHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccH
Confidence            77777888874 4445555688999999999754  56777777888888888877788776654 55689999999999


Q ss_pred             HHHHHHHHHHHHhcCC-CcchHHH
Q 009471          456 SVREVAAQAISSLVTL-PQNCREV  478 (534)
Q Consensus       456 ~v~~~A~~aL~~L~~~-~~~~~~~  478 (534)
                      ++|+..-.+|--++.+ .+-.+.+
T Consensus       649 eiRkVCDn~LdIiae~d~EWAKrI  672 (791)
T KOG1222|consen  649 EIRKVCDNALDIIAEHDKEWAKRI  672 (791)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999888854 3444444

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.43  E-value=1.1e-11  Score=117.85  Aligned_cols=193  Identities=18%  Similarity=0.220  Sum_probs=165.8

Q ss_pred             HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-Ccc
Q 009471          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVS  392 (534)
Q Consensus       316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~  392 (534)
                      .+.+-++.|+.+|+...++.+++.++.++.+.+. ++.++..+.+.|+++.+..++++  +.+++.|+.+|.|++. .++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4567789999999866555899999999999876 77889999999999999999987  5689999999999998 455


Q ss_pred             HHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          393 QEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      ...+-.  .++.+++.+.+.  +..+|..++++|.+|+...+++..+.  ++++.++.++..++..++..++.+|.+|+.
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            555432  578888766544  57999999999999998888877774  479999999999999999999999999999


Q ss_pred             CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .+...++++. .+.+..++.+++.+...++-..++..+.|+..+
T Consensus       164 np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  164 NPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             CHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999999988 478899999999986667888999999999877

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.32  E-value=2.8e-10  Score=116.64  Aligned_cols=365  Identities=15%  Similarity=0.104  Sum_probs=228.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGS-CENWL  233 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~-~~~~l  233 (534)
                      ..++..+...+++....|..-..+++.+.++.+..+++.|.++.|+.++...+  ++.+...+.++..+...++ ....+
T Consensus        12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            45677788889999999999999998877777777889999999999998765  6777666677777766554 77888


Q ss_pred             HhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhhcChhhHHHHH---hCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          234 VSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMSAEMARAIV---GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~~~~~~~l~---~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      .+.+.++.|+++|.+.+ ..+++...+++..+....+......   ....+..+..+...+.......-+....+++..+
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence            89999999999999988 7899999999999976654332211   1222333333332122222222222222222222


Q ss_pred             hHHHHHHhhCcHHHH------------------------------------HHHh---------------hcCCChhHHH
Q 009471          310 EVRQMLAEEGIVSVM------------------------------------IKLL---------------DCGILLGSKE  338 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L------------------------------------~~ll---------------~~~~~~~v~~  338 (534)
                      +.+..+.+.|+.+.+                                    +.++               ++++. ..+.
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~-s~~l  250 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF-SERL  250 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc-cHHH
Confidence            222222222222222                                    2222               12222 3344


Q ss_pred             HHHHHHHHHccCC-------------hHHHHHHH--------------------------------------hcCChHHH
Q 009471          339 YAAECLQNLTASN-------------ENLRRSVV--------------------------------------SEGGIRSL  367 (534)
Q Consensus       339 ~a~~~L~~La~~~-------------~~~~~~i~--------------------------------------~~g~l~~L  367 (534)
                      .++.++.++...+             +..-..+.                                      ++..++.+
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            4555555544322             00000000                                      00011111


Q ss_pred             HHhh------------------------------------------------------cCCchHHHHHHHHHHhhcC--c
Q 009471          368 LAYL------------------------------------------------------DGPLPQESAVGALRNLVGS--V  391 (534)
Q Consensus       368 ~~~L------------------------------------------------------~~~~~~~~a~~aL~~La~~--~  391 (534)
                      .+++                                                      .+.+....++-++.++++.  .
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            1110                                                      0001122333333333331  0


Q ss_pred             cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       392 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      -+..+-...++.+|++++..++..++..+.++|+|+.-. ...+..+.+.|||..+.+++.+.++.++..+.++|+++.-
T Consensus       411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            111122356789999999889999999999999999954 8889999999999999999999999999999999999985


Q ss_pred             CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHH
Q 009471          471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERL  522 (534)
Q Consensus       471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l  522 (534)
                      ...+-..+.-..+.-..++..+-.+++-.+++++...|.||+-+.++.++-+
T Consensus       491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl  542 (678)
T KOG1293|consen  491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL  542 (678)
T ss_pred             cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence            5544444333345556666666666677899999999999998866666554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.30  E-value=7.8e-10  Score=125.23  Aligned_cols=246  Identities=20%  Similarity=0.172  Sum_probs=194.7

Q ss_pred             cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009471          194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA  273 (534)
Q Consensus       194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~  273 (534)
                      +...++.|+..|+++++.+|..|+..|..+..          .+.++.|+..|++.+..++..|+.+|..+....+    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            33568899999999999999999999998752          3458999999999999999999999988853221    


Q ss_pred             HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                           ..+.|...+.++++.+|..++.+|..+...           -...++..+.+.+. .++..|+.+|..+-.    
T Consensus       685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~----  743 (897)
T PRK13800        685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALGDPDH-RVRIEAVRALVSVDD----  743 (897)
T ss_pred             -----chHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhcCCCH-HHHHHHHHHHhcccC----
Confidence                 125677888899999999999999876532           13456778888887 899999999988632    


Q ss_pred             HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh
Q 009471          354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA  431 (534)
Q Consensus       354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~  431 (534)
                                .+.|...+.+  +.+|..++.+|..+....       ...++.|..++++.++.|+..|+.+|.++...+
T Consensus       744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~  806 (897)
T PRK13800        744 ----------VESVAGAATDENREVRIAVAKGLATLGAGG-------APAGDAVRALTGDPDPLVRAAALAALAELGCPP  806 (897)
T ss_pred             ----------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc
Confidence                      2345667765  678999999999987531       223788999999999999999999999986541


Q ss_pred             hHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhh
Q 009471          432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (534)
Q Consensus       432 ~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L  511 (534)
                               ..++.++..+.+.++.+|..|+.+|..+.           ....++.|+.+|++. +..+|..|+.+|..+
T Consensus       807 ---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~  865 (897)
T PRK13800        807 ---------DDVAAATAALRASAWQVRQGAARALAGAA-----------ADVAVPALVEALTDP-HLDVRKAAVLALTRW  865 (897)
T ss_pred             ---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc-----------ccchHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence                     22456788899999999999999998763           234568899999776 557999999999997


Q ss_pred             c
Q 009471          512 S  512 (534)
Q Consensus       512 ~  512 (534)
                      .
T Consensus       866 ~  866 (897)
T PRK13800        866 P  866 (897)
T ss_pred             C
Confidence            3

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.29  E-value=7.9e-11  Score=99.73  Aligned_cols=116  Identities=22%  Similarity=0.352  Sum_probs=106.3

Q ss_pred             HhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471          192 VMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM  270 (534)
Q Consensus       192 i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~  270 (534)
                      +++.|+++.++++++++++.++..++.+|.+++.+ ++.+..+++.|+++.++.+|.++++.++..++++|++++.+.+.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            56789999999999999999999999999999998 45888888999999999999999999999999999999988644


Q ss_pred             -HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          271 -ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       271 -~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                       ...+...|+++.|++++.+.+..++..++++|+||+.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence             5567789999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.28  E-value=8.9e-11  Score=99.41  Aligned_cols=117  Identities=27%  Similarity=0.414  Sum_probs=107.1

Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-  309 (534)
                      .+++.|+++.++.+|.++++.+++.++++|.+++.+ ++....+.+.|+++.++.++.++++.++..++++|+|++.++ 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467889999999999999999999999999999988 677888888999999999999999999999999999999976 


Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      .....+.+.|+++.+++++.+++. .+++.++.+|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence            567777889999999999998876 899999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.7e-09  Score=111.72  Aligned_cols=359  Identities=20%  Similarity=0.262  Sum_probs=251.6

Q ss_pred             HHHHHHHHHHHHhhcChHhHHHHhc----CCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHH
Q 009471          170 AKHKALDSLVEAMKEDEKNVLAVMG----RSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR  244 (534)
Q Consensus       170 ~~~~A~~~L~~l~~~~~~~~~~i~~----~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~  244 (534)
                      ...-++.+|.++...+|+-...+-.    .|..+.+...+.. .++.++..|+.++..+..+.++...++..|++..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            4566888999999888854332221    2667777777765 5689999999999999999999999999999999999


Q ss_pred             HHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHH-HccCChHHHHHHHHHHHHccCCc--hHHHHH------
Q 009471          245 LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISAVP--EVRQML------  315 (534)
Q Consensus       245 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~~~--~~~~~i------  315 (534)
                      +|.+. +..++.+..+|+.|+.+.+..+.-.++||+..+..+ |.+.++..|..++..+..|..++  .-+..|      
T Consensus      1821 lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred             HHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence            99875 567999999999999999999988899998888765 66778888999999999998754  212111      


Q ss_pred             -------HhhCcHHHHHHHhhcC--CCh-----hHHHHHHHHHHHHccC-------------------------------
Q 009471          316 -------AEEGIVSVMIKLLDCG--ILL-----GSKEYAAECLQNLTAS-------------------------------  350 (534)
Q Consensus       316 -------~e~g~i~~L~~ll~~~--~~~-----~v~~~a~~~L~~La~~-------------------------------  350 (534)
                             ...|- ...+..++..  +++     ..+......+..++..                               
T Consensus      1900 P~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aV 1978 (2235)
T KOG1789|consen 1900 PEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAV 1978 (2235)
T ss_pred             hHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCccc
Confidence                   11221 3444555322  110     1222333334444320                               


Q ss_pred             -ChHHHHHHHh------------cCChHHHHHhhcC--C--chHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc
Q 009471          351 -NENLRRSVVS------------EGGIRSLLAYLDG--P--LPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA  411 (534)
Q Consensus       351 -~~~~~~~i~~------------~g~l~~L~~~L~~--~--~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~  411 (534)
                       ...+|..+.+            .+.+++++.++..  |  ...+.-..++..|.+  +.-.+.+-..|.+|.++..+..
T Consensus      1979 GG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~ 2058 (2235)
T KOG1789|consen 1979 GGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCL 2058 (2235)
T ss_pred             chhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHh
Confidence             0011211111            2334555555532  2  233444555666665  4555667778999999999987


Q ss_pred             CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHH---hhCCCHHHH
Q 009471          412 GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK---RDDKSVPNL  488 (534)
Q Consensus       412 ~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~---~~~~~v~~L  488 (534)
                      .+..+-..|++.|..|+.+.-+.++|....++..++..+.. ......-|+++|..+..  .++.+++   -..|.++.|
T Consensus      2059 ~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~--r~~~eLVAQ~LK~gLvpyL 2135 (2235)
T KOG1789|consen 2059 QNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMK--RNTGELVAQMLKCGLVPYL 2135 (2235)
T ss_pred             cCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHH--HhHHHHHHHHhccCcHHHH
Confidence            77677789999999999999999999888888888888873 45566789999998875  3333333   257999999


Q ss_pred             HhhcCCCC------chhHHHHHHHHHHhhchh---HHHHHHHHhhccccccccC
Q 009471          489 VQLLDPSP------QNTAKKYAVACLASLSPS---ARKLLERLERGRLRSFFSR  533 (534)
Q Consensus       489 v~lL~~~~------~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~~~~~~~~  533 (534)
                      +++|+...      ....+.....+|......   ..+..|.|.++-.||-|+.
T Consensus      2136 L~LLd~~tL~~~~~~aas~A~Iv~aLk~~~~~l~vg~kV~EILd~S~VWSAfKD 2189 (2235)
T KOG1789|consen 2136 LQLLDSSTLNGVSNGAAARAEIVDALKSAILDLKVGQKVAEILDKSPVWSAFKD 2189 (2235)
T ss_pred             HHHhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence            99998642      223455556666666555   7889999999999998864

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=4.3e-10  Score=114.94  Aligned_cols=425  Identities=16%  Similarity=0.126  Sum_probs=262.0

Q ss_pred             cccccchHHHHHHHHHHhHHHHHhhhcccCccchhhHHHHHHhccccccccccCCCCCCCchh--HHHHHHHHHHHHHHH
Q 009471           10 LANIQSADEWLLHAQELVPVAVEKARQIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNAL--CREQLQAVSKTLKEA   87 (534)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~   87 (534)
                      +..|++-++.|++..+++..-.+--.+++      .....|++++..       +|+|...=.  +-+.-..-..| +.+
T Consensus         2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~~~------~~~~~~leq~~~-------~pdfnnYL~~IL~~~~~~d~~~-Rs~   67 (885)
T KOG2023|consen    2 AMTWQPDEQGLQQLAQLLKNSQSPNSETR------NNVQEKLEQFNL-------FPDFNNYLIYILIRAKSEDVPT-RSL   67 (885)
T ss_pred             CCCCcccHHHHHHHHHHHHhccCCChHHH------HHHHHHHHHHhc-------ccchhceeeEEEecccccchhH-HHH
Confidence            34678889998887777655433322221      234455555543       454442211  01111111111 222


Q ss_pred             HHHHHHhcCCCCCC--cchhhhhhHhhhchhhhhhhchhhHHhh--CCCCCCCcccccCCCCchhhhhhhchHHHHHHHH
Q 009471           88 IELAELCVKEKYEG--KLRMQSDLDALSGKLDLNLHDCGLLIKT--GVLGEATLPLSVAGSSTDAEATTHGNTRELLARL  163 (534)
Q Consensus        88 ~~l~~~c~~~~~~~--~l~~~s~~~~~~~~l~~~~~~~~~~~~~--g~l~~~~~~v~~~p~~~a~~~~~~~~i~~Ll~~L  163 (534)
                      ..|--|-   +..|  ....+.+++-+.+..-..++|.+.++|.  |++-  ..++ +..    ....-...++.|...|
T Consensus        68 aGLlLKN---nvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivI--TTI~-s~~----~~~~wpelLp~L~~~L  137 (885)
T KOG2023|consen   68 AGLLLKN---NVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVI--TTIA-STG----GLQHWPELLPQLCELL  137 (885)
T ss_pred             hhhhHhc---cccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhhee--eeee-ccc----ccccchhHHHHHHHHh
Confidence            2333222   2211  1233457778888888889998888873  2220  0111 111    1111244678888889


Q ss_pred             hcCCHHHHHHHHHHHHHHhhcChHhHHHHh-cC---CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCH
Q 009471          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GR---SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL  239 (534)
Q Consensus       164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~---g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i  239 (534)
                      .+.+.....-|..+|.+++.++.+....-+ ..   -.+|.++++.+++++.+|..|+.++..+.-....--...-...+
T Consensus       138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl  217 (885)
T KOG2023|consen  138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL  217 (885)
T ss_pred             cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence            888888899999999999987665433211 11   24899999999999999999999998886654321111112346


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--
Q 009471          240 PPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--  317 (534)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--  317 (534)
                      ..+..+-.+.++++|...|.+|..|......+-.-.-.+.++.++..-++.|..+-..||.....++..+-.+..+..  
T Consensus       218 e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l  297 (885)
T KOG2023|consen  218 EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL  297 (885)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH
Confidence            777777788999999999999999876433222111256678888888888999999999999999998844443333  


Q ss_pred             hCcHHHHHHHhhcCC-C------------------------------------------------------hhHHHHHHH
Q 009471          318 EGIVSVMIKLLDCGI-L------------------------------------------------------LGSKEYAAE  342 (534)
Q Consensus       318 ~g~i~~L~~ll~~~~-~------------------------------------------------------~~v~~~a~~  342 (534)
                      ...+|.|++-+...+ +                                                      -..|..++.
T Consensus       298 ~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAA  377 (885)
T KOG2023|consen  298 DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAA  377 (885)
T ss_pred             HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHH
Confidence            456666664332111 0                                                      013333444


Q ss_pred             HHHHHccCChHHHHHHHhcCChHHHHHhhcC------CchHHHHHHHHHHhhcCccHHHHHh--cCcHHHHHHHHhcCCH
Q 009471          343 CLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSL  414 (534)
Q Consensus       343 ~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~~a~~aL~~La~~~~~~~l~~--~~~i~~Lv~lL~~~~~  414 (534)
                      +|--++.        ++....++.++.+++.      -.+++.++-+++.++.. +-+-++.  ...+|.|+.+|.++.+
T Consensus       378 aLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkp  448 (885)
T KOG2023|consen  378 ALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKP  448 (885)
T ss_pred             HHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCcc
Confidence            4444432        2334456666666643      24789999999999872 1111222  2468899999999999


Q ss_pred             HHHHHHHHHHHHhcCC---hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          415 GAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       415 ~v~~~A~~aL~~la~~---~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      -|+..+||+|.+.+..   .+..+.+  ...+..|++.+-+++..||++|+.+...+-
T Consensus       449 lVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  449 LVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             ceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999864   2222333  123444445555788999999999998884

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.20  E-value=1.5e-08  Score=109.07  Aligned_cols=320  Identities=18%  Similarity=0.175  Sum_probs=211.8

Q ss_pred             HHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC
Q 009471          160 LARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG  237 (534)
Q Consensus       160 l~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g  237 (534)
                      -..+.+.  +...+.+++..|..+...+.+.     + -+....++++.+.+...+..+--++..+...++..-.+    
T Consensus        10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-----~-~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----   79 (526)
T PF01602_consen   10 AKILNSFKIDISKKKEALKKLIYLMMLGYDI-----S-FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----   79 (526)
T ss_dssp             HHHHHCSSTHHHHHHHHHHHHHHHHHTT--------G-STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-----c-hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----
Confidence            3344444  6777888888877775433321     1 56777888888888888888888888887766532222    


Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHH
Q 009471          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA  316 (534)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~  316 (534)
                      ++..+.+=|.++++.++..|..++.++. +++....+.     +.+.+++.+++|.+|..|+.++.++.. .|+.   +.
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~l~-----~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEPLI-----PDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHHHH-----HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhHHH-----HHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HH
Confidence            4677777788888888999999999887 455555553     788888888899999988888888775 2221   11


Q ss_pred             hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHH
Q 009471          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQE  394 (534)
Q Consensus       317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~  394 (534)
                      .. .++.+.+++.+.++ .++..|+.++..+ ..++.....+ -...+..|.+++..  |..+..++..+..++......
T Consensus       151 ~~-~~~~l~~lL~d~~~-~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  151 DE-LIPKLKQLLSDKDP-SVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             GG-HHHHHHHHTTHSSH-HHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             HH-HHHHHhhhccCCcc-hhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence            12 57888888877775 7888888888888 2233221111 11123444444433  567888888888887622111


Q ss_pred             HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc
Q 009471          395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN  474 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~  474 (534)
                      . ....+++.+..++++.++.|..+++.++..+...+...     ..+++.|++++.+++++++..++..|..++...  
T Consensus       227 ~-~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--  298 (526)
T PF01602_consen  227 A-DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--  298 (526)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--
T ss_pred             h-hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhccc--
Confidence            1 01456788888888888888888888888888765522     334888888888888889988888888887544  


Q ss_pred             hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          475 CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       475 ~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                       ...+.   .....+..+..+++..+|..++.+|.+++..
T Consensus       299 -~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  299 -PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             -HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             -chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence             22222   1222233444333457888888888888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=1.8e-09  Score=116.21  Aligned_cols=330  Identities=18%  Similarity=0.186  Sum_probs=224.8

Q ss_pred             hhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 009471          151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      -....++.+...+.+.++.+|..|+.++..+...+|+...   .. .++.+.++|.++++.++..|+.++..+ ..++..
T Consensus       111 ~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~  185 (526)
T PF01602_consen  111 MAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS  185 (526)
T ss_dssp             HHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH
T ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch
Confidence            3445677777888899999999999999999887775422   22 588899999888999999999999988 222110


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE  310 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~  310 (534)
                      ..-.-...+..|.+++...++..+.....+|..++...+....-  ...++.+..++++.++.+...++.++..+...+.
T Consensus       186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~  263 (526)
T PF01602_consen  186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE  263 (526)
T ss_dssp             HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred             hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH
Confidence            00111223455555566788888988999988887654332200  2235888888888888899999999998887655


Q ss_pred             HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-C--CchHHHHHHHHHHh
Q 009471          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVGALRNL  387 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-~--~~~~~~a~~aL~~L  387 (534)
                           .-..+++.+..++.+.+. .++..++.+|..++..++   ..+.   .....+..+. +  +.++..++..|..+
T Consensus       264 -----~~~~~~~~L~~lL~s~~~-nvr~~~L~~L~~l~~~~~---~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l  331 (526)
T PF01602_consen  264 -----LLQKAINPLIKLLSSSDP-NVRYIALDSLSQLAQSNP---PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKL  331 (526)
T ss_dssp             -----HHHHHHHHHHHHHTSSSH-HHHHHHHHHHHHHCCHCH---HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred             -----HHHhhHHHHHHHhhcccc-hhehhHHHHHHHhhcccc---hhhh---hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence                 334568889999986665 799999999999998551   1222   1222233333 2  56889999999999


Q ss_pred             hcCccHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 009471          388 VGSVSQEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (534)
Q Consensus       388 a~~~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL  465 (534)
                      +.+.+...     +++.|...+ ...+++++..++..++.++.. +.....     +++.+++++...+..+...+...+
T Consensus       332 ~~~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i  401 (526)
T PF01602_consen  332 ANESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYVSNEIINVI  401 (526)
T ss_dssp             --HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGCHCHHHHHH
T ss_pred             ccccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccccchHHHHH
Confidence            98544433     578888888 455888999999999998843 332333     367778888766667777777777


Q ss_pred             HHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       466 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ..+....++....     .+..|+..++.-..+..+..++++++..+..
T Consensus       402 ~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~  445 (526)
T PF01602_consen  402 RDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGEL  445 (526)
T ss_dssp             HHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred             HHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence            7776443332221     2566777777654556777888888776655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=6.2e-08  Score=101.27  Aligned_cols=361  Identities=17%  Similarity=0.172  Sum_probs=257.7

Q ss_pred             hchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc-
Q 009471          153 HGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS-  228 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~-  228 (534)
                      ..+|+.|+.++.+.. .+.|+.|+..|..+++   +++ ..+...|+++|++.|...  |+++...++.++.++..+++ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            447999999997665 7889999999999875   454 445568899999999774  69999999999999977652 


Q ss_pred             ------hh----------HHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHH-hCCChHHHHHHHc
Q 009471          229 ------CE----------NWL-VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIV-GHGGVRPLIEICQ  288 (534)
Q Consensus       229 ------~~----------~~l-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~-~~g~i~~Lv~ll~  288 (534)
                            .+          +.+ -..+.|..++..++..+-.+|..+...+.++-.+  .+.+..+. ..-||..|+.++.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  11          222 2447899999999999999999999999998554  34455544 4899999999999


Q ss_pred             cCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCC--C-hhHHHHHHHHHHHHccCChHHHHHHHhcCCh
Q 009471          289 TGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGI--L-LGSKEYAAECLQNLTASNENLRRSVVSEGGI  364 (534)
Q Consensus       289 ~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~--~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l  364 (534)
                      +....+|..+.-.|..|+.+. .+++.++-++++..|+.+++...  + .-|.+.|+..|.||-..+..++..+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            999999999999999999866 55555555999999999996432  1 1478999999999999999999888889999


Q ss_pred             HHHHHhhcC----C-c-----h-----HHHHHHHHHHhhcCcc--------HHHHHhcCcHHHHHHHHhcC--CHHHHHH
Q 009471          365 RSLLAYLDG----P-L-----P-----QESAVGALRNLVGSVS--------QEVLISLGFFPRLVHVLKAG--SLGAQQA  419 (534)
Q Consensus       365 ~~L~~~L~~----~-~-----~-----~~~a~~aL~~La~~~~--------~~~l~~~~~i~~Lv~lL~~~--~~~v~~~  419 (534)
                      |.|.++|.-    + +     .     ...++.+++.+..+.+        ...+...+++..|..++-+.  ..+++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            999988742    1 1     1     2356777777777422        23556788899999888665  3589999


Q ss_pred             HHHHHHHhcCC-hhHHHHHHhcC----------chHHHHHhhcC-CChHHHHHHHHHHHHhc-CCCcchHHHHhh-----
Q 009471          420 AASALCRVCTS-AEMKKLVGEAG----------CTPLLIKLLEA-KPNSVREVAAQAISSLV-TLPQNCREVKRD-----  481 (534)
Q Consensus       420 A~~aL~~la~~-~~~~~~i~~~g----------~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~-~~~~~~~~~~~~-----  481 (534)
                      +..+++++.++ ..+...+.+..          .+-.++.+..+ ..+..|.+...++..+. .+....+.++..     
T Consensus       337 siitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~  416 (970)
T KOG0946|consen  337 SIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSS  416 (970)
T ss_pred             HHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence            99999999976 55566654421          11223333333 45667777777776555 445566655541     


Q ss_pred             ---CC-CH---HHHHhhcCCCCchhHHHHHHHHHHhhchhHHHH
Q 009471          482 ---DK-SV---PNLVQLLDPSPQNTAKKYAVACLASLSPSARKL  518 (534)
Q Consensus       482 ---~~-~v---~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~  518 (534)
                         -+ .+   ..++..+.+. +...-.++..+|+++.....+.
T Consensus       417 ~nst~Nsl~ag~l~~~~l~s~-d~~~nwFt~v~lmh~l~dn~~~  459 (970)
T KOG0946|consen  417 TNSTSNSLSAGQLLLVGLSST-DSLDNWFTAVILMHLLQDNDQL  459 (970)
T ss_pred             ccccccchhhhhHHHHhhccc-hHHHHHHHHHHHHHHHHHhHHH
Confidence               01 11   1122333332 2234456666777766554333

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.17  E-value=1e-08  Score=105.36  Aligned_cols=325  Identities=18%  Similarity=0.144  Sum_probs=210.2

Q ss_pred             chHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCc--
Q 009471          154 GNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS--  228 (534)
Q Consensus       154 ~~i~~Ll~~L~~--~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~--  228 (534)
                      ..++.++..++.  +.++.+.+....+..++.+.......+.+.+..+.|.++|.++| ..+++..++++..+-+..+  
T Consensus        51 GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q  130 (678)
T KOG1293|consen   51 GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQ  130 (678)
T ss_pred             cchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccc
Confidence            346777776654  45666777777888888888888888999899999999999999 8899999999999987664  


Q ss_pred             -hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHH---H
Q 009471          229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK---N  304 (534)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~---n  304 (534)
                       .........++..+.-++.-+.......-+....+++...+++..+..+|..+.+.-++..-+...|..+..+++   +
T Consensus       131 ~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~  210 (678)
T KOG1293|consen  131 DKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDR  210 (678)
T ss_pred             ccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccce
Confidence             223333334555555555424444445555555666666666666666666665554444333444444444444   3


Q ss_pred             ccCCc-hHHH----HHHhhCc---------------------HHHHHHHhhcCCC-------------------------
Q 009471          305 ISAVP-EVRQ----MLAEEGI---------------------VSVMIKLLDCGIL-------------------------  333 (534)
Q Consensus       305 La~~~-~~~~----~i~e~g~---------------------i~~L~~ll~~~~~-------------------------  333 (534)
                      +..++ ....    ...+.|+                     ..+++.+++.+.+                         
T Consensus       211 iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~  290 (678)
T KOG1293|consen  211 ILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIV  290 (678)
T ss_pred             eeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhhe
Confidence            22221 1000    0000111                     1122222221100                         


Q ss_pred             --------------------------------------------------------------------------------
Q 009471          334 --------------------------------------------------------------------------------  333 (534)
Q Consensus       334 --------------------------------------------------------------------------------  333 (534)
                                                                                                      
T Consensus       291 l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~  370 (678)
T KOG1293|consen  291 LMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLK  370 (678)
T ss_pred             eecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHH
Confidence                                                                                            


Q ss_pred             --------------------hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--hHHHHHHHHHHhhc--
Q 009471          334 --------------------LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVG--  389 (534)
Q Consensus       334 --------------------~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--~~~~a~~aL~~La~--  389 (534)
                                          ......++.++.+++..-...|...-...+.++|++++.+|+  +...++++|.|+..  
T Consensus       371 k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef  450 (678)
T KOG1293|consen  371 KEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF  450 (678)
T ss_pred             HHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc
Confidence                                011222233333333222222222223567888999987765  67889999999997  


Q ss_pred             CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (534)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~  467 (534)
                      .+-+..++..|+++.+..++.+.++.++..+.|+|+++..+  ++.+......=+...+..+.++++..||+.+...|.|
T Consensus       451 s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN  530 (678)
T KOG1293|consen  451 SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN  530 (678)
T ss_pred             ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999865  4445555444457788888999999999999999999


Q ss_pred             hcCCCcchHHH
Q 009471          468 LVTLPQNCREV  478 (534)
Q Consensus       468 L~~~~~~~~~~  478 (534)
                      +..+....-.+
T Consensus       531 l~c~~~~svdf  541 (678)
T KOG1293|consen  531 LTCNSRKSVDF  541 (678)
T ss_pred             hhcCcHHHHHH
Confidence            98775554443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.15  E-value=1.5e-08  Score=102.87  Aligned_cols=272  Identities=11%  Similarity=0.090  Sum_probs=195.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      ...++..|..+|.-....|+..|..++...+.........-..+.+...++.+ +...+..++.+|..+...+++|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            45566777888888899999999998865443211111111344556666654 47888899999999999999999999


Q ss_pred             hcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccCCc--
Q 009471          235 SEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISAVP--  309 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~~~--  309 (534)
                      +.++++.|+.+|+..  +...+..++-++|-||.+++....+...+.|+.|+.+++.. -..+.+-++.+|+|+...+  
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            999999999999873  56889999999999999988777777899999999999864 4456788999999998843  


Q ss_pred             -----hHHHHHHhhCcHHHHHHHhhcCC-ChhHHH-------HHHHHHHHHccCChHHHH--------------------
Q 009471          310 -----EVRQMLAEEGIVSVMIKLLDCGI-LLGSKE-------YAAECLQNLTASNENLRR--------------------  356 (534)
Q Consensus       310 -----~~~~~i~e~g~i~~L~~ll~~~~-~~~v~~-------~a~~~L~~La~~~~~~~~--------------------  356 (534)
                           .....|++.|+.+.+-.+....- ++++.+       .--..+..+++ .+....                    
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp~H~se~FW~  341 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSPVHKSEKFWR  341 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCCCCCCchHHH
Confidence                 24456677776665544443221 222222       22222333343 111111                    


Q ss_pred             ----HHHhc--CChHHHHHhhc---CCchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471          357 ----SVVSE--GGIRSLLAYLD---GPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (534)
Q Consensus       357 ----~i~~~--g~l~~L~~~L~---~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (534)
                          .+-+.  ..+..|+++|+   +|.+...||.=|+.+++  |..+..+-..|+=..+++++.+++++|+.+|+.++.
T Consensus       342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ  421 (429)
T cd00256         342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ  421 (429)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                11111  23677888885   26778899999999998  667777777899999999999999999999999998


Q ss_pred             Hhc
Q 009471          426 RVC  428 (534)
Q Consensus       426 ~la  428 (534)
                      .|-
T Consensus       422 klm  424 (429)
T cd00256         422 KLM  424 (429)
T ss_pred             HHH
Confidence            874

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.2e-08  Score=107.20  Aligned_cols=251  Identities=18%  Similarity=0.182  Sum_probs=199.5

Q ss_pred             hHHHHHHHHhcC-CHHHHHHHHHHHHHHhh-cChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCc-hh
Q 009471          155 NTRELLARLQIG-HLEAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       155 ~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      -+..|+.-|+.. |+..+.+|+..|.+++. .+++....+.-...||.|+.+|++++ .+++..|+++|.++++--+ ..
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            477888888765 88889999999988763 56655544444467999999999975 9999999999999998654 78


Q ss_pred             HHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC--
Q 009471          231 NWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--  307 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--  307 (534)
                      ..+++.++||.|+.-|. -.-.++.+++..+|..++..  .-.++.+.|++...+.++..-+..+|+.|+.+-.|+|.  
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88999999999997554 46888999999999999874  34567889999999999988888899999999999987  


Q ss_pred             CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc---CChHHHHHHHhcCChHHHHHhhcC------CchHH
Q 009471          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG------PLPQE  378 (534)
Q Consensus       308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~  378 (534)
                      .++.-..++|  .+|.|..+|...+. ...+.++-|+..++.   +.+..-+.+...|.+....+++.-      ..+..
T Consensus       326 ~sd~f~~v~e--alPlL~~lLs~~D~-k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  326 RSDEFHFVME--ALPLLTPLLSYQDK-KPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             CCccchHHHH--HHHHHHHHHhhccc-hhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            3344455554  59999999998887 789999999999887   345566778888988888888742      23456


Q ss_pred             HHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHh
Q 009471          379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLK  410 (534)
Q Consensus       379 ~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~  410 (534)
                      ..++.+.-+|.  +.....+...++...|..+|.
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence            67777777776  344556677888888888884

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.09  E-value=7.5e-08  Score=94.50  Aligned_cols=317  Identities=17%  Similarity=0.139  Sum_probs=229.7

Q ss_pred             chHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHh------cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471          154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVM------GRSNIAALVQLLTATSPRIREKTVTVICSLAES  226 (534)
Q Consensus       154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~------~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (534)
                      ..+..++..+.. ..++.....+.-+-+++.++......+-      ....-...+.+|...+.-+.+.+.+++..++..
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence            446666666653 4566677777778888876664433332      123367889999999999999999999999877


Q ss_pred             CchhHHHHhcC-CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHH
Q 009471          227 GSCENWLVSEG-VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTL  302 (534)
Q Consensus       227 ~~~~~~l~~~g-~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL  302 (534)
                      ..++-...+-. ....|-..+.+ .+++....++++|..+...++.+..++..+|+..++..+.+  .+-.++...+.++
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            65322111111 12333445555 57778889999999999999999999999999999998843  3667889999999


Q ss_pred             HHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh------HHHHHHHhcCChHHHHHhhcC---
Q 009471          303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE------NLRRSVVSEGGIRSLLAYLDG---  373 (534)
Q Consensus       303 ~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~------~~~~~i~~~g~l~~L~~~L~~---  373 (534)
                      |.|+.++...+.+..-+.++.|.+++++...+.|..-++.++.|+....+      .....++..+ ++.-++.|+.   
T Consensus       225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKY  303 (442)
T ss_pred             HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCC
Confidence            99999998888887789999999999887766888899999999998653      2223344444 4444455432   


Q ss_pred             --Cch-------HHHHHHHHHHhhc----------------C---------ccHHHHHh--cCcHHHHHHHHhcC-CHHH
Q 009471          374 --PLP-------QESAVGALRNLVG----------------S---------VSQEVLIS--LGFFPRLVHVLKAG-SLGA  416 (534)
Q Consensus       374 --~~~-------~~~a~~aL~~La~----------------~---------~~~~~l~~--~~~i~~Lv~lL~~~-~~~v  416 (534)
                        +++       ++.--.....|++                |         ++...+.+  ..++..|+++|+.. +|.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence              221       1111111122221                0         23334444  34588999999765 4888


Q ss_pred             HHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          417 QQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       417 ~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ..-|+.=|+.+.++ |+.+..+.+.|+=..+++++++++++|+..|..|+..|..+
T Consensus       384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            89999999999975 99999999999999999999999999999999999887643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.07  E-value=4.9e-09  Score=104.51  Aligned_cols=213  Identities=20%  Similarity=0.225  Sum_probs=158.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc------CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG------RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~------~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      .++..+ +.+.+.....+..+.+++.+++.....+..      .....+++++++++|..++..|+..|..+....+.+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~  140 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS  140 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence            444444 578888999999999999888866555543      1257889999999999999999999999988776443


Q ss_pred             HHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH-----cc--CChHHHHHHHH
Q 009471          232 WLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-----QT--GDSVSQAAAAC  300 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll-----~~--~~~~~~~~a~~  300 (534)
                      .-...+.++.++..+.+    .+...+..++.+|.+|...++.+..+.+.|+++.++.++     .+  .+..++..++-
T Consensus       141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            33335667888888876    344567899999999999999999999999999999999     22  34567799999


Q ss_pred             HHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH-HHHHHHhcCChHHHHHhh
Q 009471          301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-LRRSVVSEGGIRSLLAYL  371 (534)
Q Consensus       301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~-~~~~i~~~g~l~~L~~~L  371 (534)
                      ++|.|+..++....+...+.++.++++++....+.+.+-++.++.|+....+. +...++..|+++.+-.+.
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            99999999999999999999999999998887778999999999999986553 555666666555554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=8.6e-08  Score=104.66  Aligned_cols=349  Identities=18%  Similarity=0.167  Sum_probs=218.5

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l  233 (534)
                      .++-|++..+++++..|..|+..|..+...-.......++ ...+.+.+.+.+++..+|..|++++..++...+ ++...
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~  197 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEV  197 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence            4555566668999999999999998886432211111111 234555556666665599999999999987553 22222


Q ss_pred             Hh-cCCHHHHHHHH----ccCCHHHHHHHHHHHHHhhcChhh--HHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHH
Q 009471          234 VS-EGVLPPLIRLV----ESGSTVGKEKATISLQRLSMSAEM--ARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKN  304 (534)
Q Consensus       234 ~~-~g~i~~Lv~lL----~~~~~~~~~~A~~~L~~Ls~~~~~--~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~n  304 (534)
                      .. ...+|.++..+    +.++.+....+..+|..+....+.  +..+.  ..+..-+.+..+  -++.+|..|+..|..
T Consensus       198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs  275 (1075)
T KOG2171|consen  198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVS  275 (1075)
T ss_pred             HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            21 13456565555    456666677788888888765433  22221  123333444443  367899999999998


Q ss_pred             ccCCc-hHHHHHHh--hCcHHHHHHHhhcCCCh---------------hHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471          305 ISAVP-EVRQMLAE--EGIVSVMIKLLDCGILL---------------GSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (534)
Q Consensus       305 La~~~-~~~~~i~e--~g~i~~L~~ll~~~~~~---------------~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (534)
                      ++... ..++.-..  ...++.++.++.+....               .....|..+|-.++.+-+..       -+++.
T Consensus       276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~-------~v~p~  348 (1075)
T KOG2171|consen  276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK-------QVLPP  348 (1075)
T ss_pred             HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh-------hehHH
Confidence            88752 22222222  33455555555422210               13445556666665532221       12444


Q ss_pred             HH----HhhcCC--chHHHHHHHHHHhhcCccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH
Q 009471          367 LL----AYLDGP--LPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL  436 (534)
Q Consensus       367 L~----~~L~~~--~~~~~a~~aL~~La~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~  436 (534)
                      ++    .++.++  .-|..++.+|+.++.. +.+.+..  ..+++.++..|++++|.||..|+.+++.++.+  ++..+.
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EG-c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEG-CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            44    445664  4578889999888862 2222222  45788888889999999999999999999976  665555


Q ss_pred             HHhcCchHHHHHhhcC-CChHHHHHHHHHHHHhcCCCcch--HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          437 VGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTLPQNC--REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       437 i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~~~~~--~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      .. .-.++.|+..+.+ .++.++..|+.+|-+++..-.+.  ..+..  +.+.+++.+|..++...++..++.++.+.+.
T Consensus       428 ~~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  428 HH-ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSSKPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HH-HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            42 2456788888874 56799999999999998543332  22222  4555456566555466799999999999998


Q ss_pred             hHHH
Q 009471          514 SARK  517 (534)
Q Consensus       514 ~~k~  517 (534)
                      .+++
T Consensus       505 AA~~  508 (1075)
T KOG2171|consen  505 AAQE  508 (1075)
T ss_pred             HHhh
Confidence            8544

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=6.4e-08  Score=99.38  Aligned_cols=411  Identities=15%  Similarity=0.146  Sum_probs=253.0

Q ss_pred             HHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhhhhHhhhchhhhhhhchhh
Q 009471           46 MIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGL  125 (534)
Q Consensus        46 ~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~c~~~~~~~~l~~~s~~~~~~~~l~~~~~~~~~  125 (534)
                      .||+-++-+.+-+.+-..-..|+      ++|+.+.+.|....  -.-|     .|      .|++    |..--+|...
T Consensus       105 lIr~tvGivITTI~s~~~~~~wp------elLp~L~~~L~s~d--~n~~-----Eg------A~~A----L~KIcEDsa~  161 (885)
T KOG2023|consen  105 LIRATVGIVITTIASTGGLQHWP------ELLPQLCELLDSPD--YNTC-----EG------AFGA----LQKICEDSAQ  161 (885)
T ss_pred             HHHhhhhheeeeeecccccccch------hHHHHHHHHhcCCc--cccc-----ch------hHHH----HHHHHhhhHH
Confidence            56666666666665555555676      66666666555332  0111     12      2222    2222333333


Q ss_pred             HHhhCCCCCCCcccccCCCCchhhhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh
Q 009471          126 LIKTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL  205 (534)
Q Consensus       126 ~~~~g~l~~~~~~v~~~p~~~a~~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL  205 (534)
                      .+.+..+                +.+....++.+++..++.++..|..|+..+....-........-++ ..++.+..+-
T Consensus       162 ~lds~~~----------------~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD-~Fle~lFala  224 (885)
T KOG2023|consen  162 FLDSDVL----------------TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHID-KFLEILFALA  224 (885)
T ss_pred             HHhhhcc----------------cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHH-HHHHHHHHHc
Confidence            3332222                2346778999999999999999999999998887655544333333 5577777777


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHH
Q 009471          206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPL  283 (534)
Q Consensus       206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~L  283 (534)
                      .+++++||...+.++..|.+..+.|-.=--.+++..++..-.+.+..+.-.||.....++..+..+..+..  ...+|.|
T Consensus       225 nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL  304 (885)
T KOG2023|consen  225 NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVL  304 (885)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence            88889999999999999987654332222236677888888888999999999999999998855544432  3445555


Q ss_pred             HHHHccC--------------------------------------------------------ChHHHHHHHHHHHHccC
Q 009471          284 IEICQTG--------------------------------------------------------DSVSQAAAACTLKNISA  307 (534)
Q Consensus       284 v~ll~~~--------------------------------------------------------~~~~~~~a~~aL~nLa~  307 (534)
                      ++=+.-.                                                        ++..|+-.+.+|--|+ 
T Consensus       305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-  383 (885)
T KOG2023|consen  305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-  383 (885)
T ss_pred             HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-
Confidence            5322210                                                        0223433333333222 


Q ss_pred             CchHHHHHHhhCcHHHHHHHh----hcCCChhHHHHHHHHHHHHccCChHHHHHHHhc--CChHHHHHhhcC--CchHHH
Q 009471          308 VPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQNLTASNENLRRSVVSE--GGIRSLLAYLDG--PLPQES  379 (534)
Q Consensus       308 ~~~~~~~i~e~g~i~~L~~ll----~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~--g~l~~L~~~L~~--~~~~~~  379 (534)
                            .+.....++.++.++    .++.. .+++.++-+++.|+.+   +-+-++..  ..++.++++|++  |-+|..
T Consensus       384 ------nvf~~elL~~l~PlLk~~L~~~~W-~vrEagvLAlGAIAEG---cM~g~~p~LpeLip~l~~~L~DKkplVRsI  453 (885)
T KOG2023|consen  384 ------NVFGDELLPILLPLLKEHLSSEEW-KVREAGVLALGAIAEG---CMQGFVPHLPELIPFLLSLLDDKKPLVRSI  453 (885)
T ss_pred             ------HhhHHHHHHHHHHHHHHHcCcchh-hhhhhhHHHHHHHHHH---HhhhcccchHHHHHHHHHHhccCccceeee
Confidence                  223344555555555    45555 7899999999999963   22222211  247778888877  778999


Q ss_pred             HHHHHHHhhc---CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhh---c
Q 009471          380 AVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLL---E  451 (534)
Q Consensus       380 a~~aL~~La~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll---~  451 (534)
                      .||+|...+.   .+..++... .++..|++.+-+++..||+.|+.++..+-..  ++...++  ...+..|+..+   +
T Consensus       454 TCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l--~~IL~~l~~af~kYQ  530 (885)
T KOG2023|consen  454 TCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL--EYILDQLVFAFGKYQ  530 (885)
T ss_pred             eeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHh
Confidence            9999999886   333323222 1344445555578889999999999888643  2332222  11233333333   2


Q ss_pred             CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHh---hcCCCCchhHHHHHHHHHHhhchh
Q 009471          452 AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ---LLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       452 ~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~---lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .++--+-.-|.+.|..=+++.-|...+++  -.+++|++   +|..++  ..-.--..||.+++..
T Consensus       531 ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiq--iLmPPLi~KW~~lsd~D--KdLfPLLEClSsia~A  592 (885)
T KOG2023|consen  531 KKNLLILYDAIGTLADSVGHALNKPAYIQ--ILMPPLIEKWELLSDSD--KDLFPLLECLSSIASA  592 (885)
T ss_pred             hcceehHHHHHHHHHHHHHHhcCcHHHHH--HhccHHHHHHHhcCccc--chHHHHHHHHHHHHHH
Confidence            45555666778888877777888888777  57788874   444432  1223445666666655

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.01  E-value=1.9e-08  Score=100.22  Aligned_cols=221  Identities=17%  Similarity=0.189  Sum_probs=154.2

Q ss_pred             cHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCch-hHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009471          197 NIAALVQLLTA--TSPRIREKTVTVICSLAESGSC-ENWLVS------EGVLPPLIRLVESGSTVGKEKATISLQRLSMS  267 (534)
Q Consensus       197 ~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~~-~~~l~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~  267 (534)
                      .+..++.+|+.  +++++.+..+..+..+..+++. ...+..      .....+++++++.++..++..++..|..+...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            36666666655  4689999999999999887763 333333      13789999999999999999999999999766


Q ss_pred             hhhHHHHHhCCChHHHHHHHcc----CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh------hcCCChhHH
Q 009471          268 AEMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL------DCGILLGSK  337 (534)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll------~~~~~~~v~  337 (534)
                      .+....-...+.++.++..+.+    ++...+..++.+|.+|...++.|..+.+.++++.+.+++      .+......+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            4443332223445777777664    345567899999999999999999999999999999999      334444789


Q ss_pred             HHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-Cc--cHHHHHhcCcHHHHHHHHhc
Q 009471          338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SV--SQEVLISLGFFPRLVHVLKA  411 (534)
Q Consensus       338 ~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~--~~~~l~~~~~i~~Lv~lL~~  411 (534)
                      ++++.|++.++. ++.....+.+.+.++.|.++++.   ..+...++.++.||.. ..  ....++..++++.+-.+...
T Consensus       216 Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  216 YQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred             HHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence            999999999998 56666778888899999999865   4578899999999998 33  56677777766665555532


Q ss_pred             --CCHHHHH
Q 009471          412 --GSLGAQQ  418 (534)
Q Consensus       412 --~~~~v~~  418 (534)
                        .|+++.+
T Consensus       295 k~~Dedl~e  303 (312)
T PF03224_consen  295 KWSDEDLTE  303 (312)
T ss_dssp             --SSHHHHH
T ss_pred             CCCCHHHHH
Confidence              2555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=8.7e-07  Score=92.92  Aligned_cols=314  Identities=16%  Similarity=0.175  Sum_probs=234.7

Q ss_pred             cHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChh----
Q 009471          197 NIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAE----  269 (534)
Q Consensus       197 ~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~----  269 (534)
                      -|+.|+.-..+.. .+=|..|++.|-.++..  +|.. +...++++|+..|+..  +++....+..++.++..+++    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            4777777666655 77899999999888753  3443 4556799999999875  88899999999999976653    


Q ss_pred             --h-----------HHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHccC--CchHHHHHHh-hCcHHHHHHHhhcCC
Q 009471          270 --M-----------ARAIV-GHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE-EGIVSVMIKLLDCGI  332 (534)
Q Consensus       270 --~-----------~~~l~-~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e-~g~i~~L~~ll~~~~  332 (534)
                        +           +..|. ..+.|..|+..+...|-.+|..+...|.++-.  ..+.+..+.. +-+|..++.++.+..
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr  179 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR  179 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence              1           12333 37789999999999999999999999999876  3488888776 778999999999887


Q ss_pred             ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC------CchHHHHHHHHHHhhc--CccHHHHHhcCcHHH
Q 009471          333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPR  404 (534)
Q Consensus       333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~------~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~  404 (534)
                      . -+|..++-.|..++.+++..+..+.=++..+.|+.++..      .-+.+.|+..|-||-.  ..+...+.+.+.+++
T Consensus       180 E-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  180 E-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             h-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            6 689999999999999999998888888999999999965      2368899999999998  467778889999999


Q ss_pred             HHHHHhc---CCH--------HH--HHHHHHHHHHhcCC-------hhHHHHHHhcCchHHHHHhhcCC--ChHHHHHHH
Q 009471          405 LVHVLKA---GSL--------GA--QQAAASALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAA  462 (534)
Q Consensus       405 Lv~lL~~---~~~--------~v--~~~A~~aL~~la~~-------~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~A~  462 (534)
                      |.++|..   ++.        .|  ...++.++..+...       ..+.+.+...+++..|+.++-++  +.+++..+.
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi  338 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI  338 (970)
T ss_pred             HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence            9988842   221        11  23566677777643       23457888899999999998755  578899999


Q ss_pred             HHHHHhc-CCCcchHHHHhh----CC-CHHHHH----hhcCCCCchhHHHHHHHHHHhhchh
Q 009471          463 QAISSLV-TLPQNCREVKRD----DK-SVPNLV----QLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       463 ~aL~~L~-~~~~~~~~~~~~----~~-~v~~Lv----~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .+++... ++..|..+|..-    .. ..+.++    .+..+...-..|.....++.+....
T Consensus       339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d  400 (970)
T KOG0946|consen  339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD  400 (970)
T ss_pred             HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence            9999888 557777777651    11 122222    3333332334666666666666655

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.99  E-value=4e-08  Score=97.00  Aligned_cols=265  Identities=18%  Similarity=0.204  Sum_probs=194.7

Q ss_pred             HHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcC
Q 009471          191 AVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMS  267 (534)
Q Consensus       191 ~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~  267 (534)
                      .+...|+.+.|++++.+++  ..+|..+.+.|..+...+ +++.++..| +..++.+-+. ..++.+...+..|.+|..+
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            4556699999999999998  456999999998886544 777787777 6666666654 4777888999999999887


Q ss_pred             h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471          268 A-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL  344 (534)
Q Consensus       268 ~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L  344 (534)
                      + +.+..+++.||+..++--|+..+|.+..+++-+|.|++...  +.++.|++..+-..|+.+..+.++ -.+.+|+-+.
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe-l~R~~AClAV  331 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE-LLRLHACLAV  331 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH-HHHHHHHHHH
Confidence            4 55788999999999999999999999999999999998744  889999999999999999877765 5799999999


Q ss_pred             HHHccCChHHHHHHHhcCChH---HHHHhhcCCchHHHHHHHHHHhhcC-ccHHHHHhcCcHHHHHHHHhcCCHHHHHHH
Q 009471          345 QNLTASNENLRRSVVSEGGIR---SLLAYLDGPLPQESAVGALRNLVGS-VSQEVLISLGFFPRLVHVLKAGSLGAQQAA  420 (534)
Q Consensus       345 ~~La~~~~~~~~~i~~~g~l~---~L~~~L~~~~~~~~a~~aL~~La~~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A  420 (534)
                      ..|+. +.+....+-+.|.+.   +++..++..           .+++. ....+=.....+.+|+.+|++.--+.|..+
T Consensus       332 ~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~-----------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~  399 (832)
T KOG3678|consen  332 AVLAT-NKEVEREVRKSGTLALVEPLVASLDPG-----------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIG  399 (832)
T ss_pred             hhhhh-hhhhhHHHhhccchhhhhhhhhccCcc-----------hhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhH
Confidence            99997 455555666666544   344433321           11110 000000113457889999987766666665


Q ss_pred             HHHHHHhcC--C-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          421 ASALCRVCT--S-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       421 ~~aL~~la~--~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      +.-++.=+.  + ..--+.+.+-|.|+.|-++..+++......|.++|..+..
T Consensus       400 AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  400 AFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            554443221  2 2223556677999999999998888778889999988753

>PTZ00429 beta-adaptin; Provisional

Probab=98.99  E-value=1e-06  Score=96.25  Aligned_cols=290  Identities=13%  Similarity=0.118  Sum_probs=204.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .+.++-..|++.+...|.+++..+........+.      ..+.+..++++.+++.+++...--.+.+++...+....+ 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-  105 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-  105 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence            4667777888889888999999887776433221      134566777888999999999999999988755432222 


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHH
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM  314 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (534)
                         ++..+.+=+.+.++.+|..|.++++++.. ++....+     ++.+.+.+.+.+|-+|..|+.++.++-....  ..
T Consensus       106 ---aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~i~e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el  174 (746)
T PTZ00429        106 ---AVNTFLQDTTNSSPVVRALAVRTMMCIRV-SSVLEYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL  174 (746)
T ss_pred             ---HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence               47888888889999999999999998765 3344444     3778888899999999999999999875322  23


Q ss_pred             HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCcc
Q 009471          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVS  392 (534)
Q Consensus       315 i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~  392 (534)
                      +.+.+.++.+.+++.+.++ .++.+|+.+|..+...++..  .-...+.+..++..+.+  +..|...+.+|.... +..
T Consensus       175 v~~~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~-P~~  250 (746)
T PTZ00429        175 FYQQDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR-PSD  250 (746)
T ss_pred             ccccchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCC
Confidence            3456788899999988887 89999999999998654421  11223335566666653  667777777775433 222


Q ss_pred             HHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      ...  ...++..+...|++.++.|...|++++.++...  ++..+.+. ....++|+.++ +.++++|..++..|..++.
T Consensus       251 ~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        251 KES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             cHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence            222  134678888889999999999999999999854  33322221 11235566664 4567788888777766654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=7.2e-08  Score=93.47  Aligned_cols=182  Identities=20%  Similarity=0.231  Sum_probs=158.1

Q ss_pred             CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHH
Q 009471          249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKL  327 (534)
Q Consensus       249 ~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~l  327 (534)
                      .+.+-++.|..-|..+..+-+++..+...||...++.++.+.++.+|..|+++|...+. +|..+..+.+.|+++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            36777889999999999999999999999999999999999999999999999999988 56899999999999999999


Q ss_pred             hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhc--CccHHHHHhcCc
Q 009471          328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLGF  401 (534)
Q Consensus       328 l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~--~~~~~~l~~~~~  401 (534)
                      +.+.++..++..|+.++..+-..++.....+...+|...|..++++    ...+..++..+..+..  ......+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            9876665789999999999999999999999999999999999976    3467889999999987  233344556777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          402 FPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                      ...+..+..+.+..+.+.+..++..+...
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            77778888888889999999888877643

>PTZ00429 beta-adaptin; Provisional

Probab=98.94  E-value=2.8e-06  Score=92.86  Aligned_cols=328  Identities=13%  Similarity=0.120  Sum_probs=219.9

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (534)
                      ...+..+.+.+...++.+|..|+-++.++...+++   .+.+.|.++.|.++|.++++.+...|+.+|..+....+.. .
T Consensus       139 e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l  214 (746)
T PTZ00429        139 EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-I  214 (746)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-h
Confidence            33456666777888999999999999999876663   3345678999999999999999999999999998765422 2


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--h
Q 009471          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--E  310 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~  310 (534)
                      -...+.+..++..+.+.++..+-....+|......++. ..   ...+..+...+++.++.+...|+.++.++....  +
T Consensus       215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~-e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~  290 (746)
T PTZ00429        215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE-SA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE  290 (746)
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH-HH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence            22334466677777777777787777777654322111 11   233577788888999999999999999998642  2


Q ss_pred             HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHHHhhc
Q 009471          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG  389 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~  389 (534)
                      ...... ......++.++ ++++ +++..++..|..+....+.    ++... +..++...++ ..++...+.+|..++.
T Consensus       291 ~~~~~~-~rl~~pLv~L~-ss~~-eiqyvaLr~I~~i~~~~P~----lf~~~-~~~Ff~~~~Dp~yIK~~KLeIL~~Lan  362 (746)
T PTZ00429        291 LIERCT-VRVNTALLTLS-RRDA-ETQYIVCKNIHALLVIFPN----LLRTN-LDSFYVRYSDPPFVKLEKLRLLLKLVT  362 (746)
T ss_pred             HHHHHH-HHHHHHHHHhh-CCCc-cHHHHHHHHHHHHHHHCHH----HHHHH-HHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence            222221 22335566664 3444 7999999999888875542    23221 4444444455 4478899999999998


Q ss_pred             CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (534)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L  468 (534)
                      +.+...+     +.-|.++..+.+.+++..+..++++++.. +....     .++..|++++..+.. +...+..++.++
T Consensus       363 e~Nv~~I-----L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~I  431 (746)
T PTZ00429        363 PSVAPEI-----LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDI  431 (746)
T ss_pred             cccHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHH
Confidence            6666554     46677778788899999999999999853 43333     347788888875443 344567777777


Q ss_pred             cCCCcchHHHHhhCCCHHHHHhhcC--CCCchhHHHHHHHHHHhhchh
Q 009471          469 VTLPQNCREVKRDDKSVPNLVQLLD--PSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ...-++..       .+..|+..+.  .-.++..|...+|+|...+..
T Consensus       432 lrkyP~~~-------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~  472 (746)
T PTZ00429        432 VRKYPELL-------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF  472 (746)
T ss_pred             HHHCccHH-------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence            64433321       2344444331  112345777778888776644

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2e-07  Score=90.39  Aligned_cols=184  Identities=19%  Similarity=0.235  Sum_probs=152.4

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHH
Q 009471          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL  242 (534)
Q Consensus       164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L  242 (534)
                      .+.+.+.+..|+..|..++. +-++...++..||..+++..+++++..+|+.|+++|+..+.+++ ....+.+.|+++.|
T Consensus        93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45678999999999999986 44566788899999999999999999999999999999999887 88899999999999


Q ss_pred             HHHHccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHccCCc-hHHHHHHh
Q 009471          243 IRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNISAVP-EVRQMLAE  317 (534)
Q Consensus       243 v~lL~~~-~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~-~~~~~i~e  317 (534)
                      +..+.+. +..++..|..+++.+-.+ ++....|...+|...|..++++  .+...+..++..+.++.... ..+..+..
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999876 556778999999999876 5556778888999999999998  46667788999999988754 34444445


Q ss_pred             hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      .+....+..+....+. ++.+.++.++..+..
T Consensus       252 ~~f~~~~~~l~~~l~~-~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDF-EVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccch-hhhHHHHHHHHHHHH
Confidence            6766777777777776 788888888777665

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.1e-06  Score=80.53  Aligned_cols=316  Identities=15%  Similarity=0.149  Sum_probs=221.5

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM  270 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~  270 (534)
                      ...+.|-.-|.+++..++..++..++.+.++.+     ....+++.++++.++..+..++.++...|...+..++..++.
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence            556777777888889999999999999988765     234556889999999999999999999999999999999888


Q ss_pred             HHHHHhCCChHHH--HHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009471          271 ARAIVGHGGVRPL--IEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (534)
Q Consensus       271 ~~~l~~~g~i~~L--v~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L  347 (534)
                      -..+...+....+  ..+-...+.-.|...+..+..+.+ .++........|.+..|..-+....+.-++.++++....+
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            8888776555443  444444566677888888888776 4577777777898888877776533325788999999999


Q ss_pred             ccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHH----Hhhc-CccHHHHHh--cCcHHHHHHHHhcCCHHH
Q 009471          348 TASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALR----NLVG-SVSQEVLIS--LGFFPRLVHVLKAGSLGA  416 (534)
Q Consensus       348 a~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~----~La~-~~~~~~l~~--~~~i~~Lv~lL~~~~~~v  416 (534)
                      +. .++.|+.+-++|.++.+.+++..    |--...++...+    +.+- ....+.+.+  .-+++..++++...+++.
T Consensus       242 ae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  242 AE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            96 56778888899999999999854    222333333333    3332 223344433  234667778888999999


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhh----cCCChHHHHHHHHHHHHhcCC---CcchH----------HHH
Q 009471          417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL----EAKPNSVREVAAQAISSLVTL---PQNCR----------EVK  479 (534)
Q Consensus       417 ~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll----~~~~~~v~~~A~~aL~~L~~~---~~~~~----------~~~  479 (534)
                      ++.|..+++-|..+.+.++.+...| .|..-.++    +.....-++.+..+|.++++.   ++++.          .++
T Consensus       321 ieaAiDalGilGSnteGadlllkTg-ppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  321 IEAAIDALGILGSNTEGADLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHHhccCCcchhHHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            9999999999999988888887766 33333332    322234466777777777743   22221          000


Q ss_pred             -----hh--CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          480 -----RD--DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       480 -----~~--~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                           +.  .+-.......++.. .++++..+...++.++..
T Consensus       400 fdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaq  440 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQ  440 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcC
Confidence                 10  12223334445443 447899999999998876

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=9.9e-08  Score=100.46  Aligned_cols=200  Identities=21%  Similarity=0.209  Sum_probs=160.5

Q ss_pred             hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHH
Q 009471          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQE  394 (534)
Q Consensus       318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~  394 (534)
                      .-++|.|+.++++++..++...|+++|.+|+..-+.-...++++++||.|+.-|..   -++.|.++.+|-.|++.. ..
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~  288 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PK  288 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cH
Confidence            55799999999988777999999999999999888877889999999999987654   678999999999999832 35


Q ss_pred             HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-
Q 009471          395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-  471 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-  471 (534)
                      .++..|.+...+.++.--+..+|+.|+.+..|+|.+  ++--..+.  ..+|.|..++...+..+.+.++.++++++.. 
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence            678899999999999888899999999999999975  44444443  4699999999999999999999999999833 


Q ss_pred             --CcchHHHHhhCCCHHHHHhhcCCCC---chhHHHHHHHHHHhhchhHHHHHH
Q 009471          472 --PQNCREVKRDDKSVPNLVQLLDPSP---QNTAKKYAVACLASLSPSARKLLE  520 (534)
Q Consensus       472 --~~~~~~~~~~~~~v~~Lv~lL~~~~---~~~~k~~a~~~L~~L~~~~k~~~~  520 (534)
                        .++.-+.+-.++.+....+||.-.+   +......-+..|..++++..-+++
T Consensus       367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~  420 (1051)
T KOG0168|consen  367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFR  420 (1051)
T ss_pred             ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHH
Confidence              3444444446899999999997653   233556667777778777333333

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.78  E-value=1.5e-06  Score=85.47  Aligned_cols=271  Identities=13%  Similarity=0.087  Sum_probs=191.7

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCc----HHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSN----IAALVQLLTA-TSPRIREKTVTVICSLAESG  227 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~----v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~  227 (534)
                      +......+..|..++.-....+...+..++......    ++.+.    ...|-..+++ .+++...-++++|..+...+
T Consensus       113 ~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~  188 (442)
T KOG2759|consen  113 RTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD  188 (442)
T ss_pred             ccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc
Confidence            333556677777777766666666666666533321    11112    2334445555 55788899999999999999


Q ss_pred             chhHHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHH
Q 009471          228 SCENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKN  304 (534)
Q Consensus       228 ~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~-~~~~~~a~~aL~n  304 (534)
                      +.|..++.++++..+++.+.+  .+..++...+-+++-|+.++..++.+...+.|+.|..+++... ..+.+-++.+++|
T Consensus       189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~N  268 (442)
T KOG2759|consen  189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRN  268 (442)
T ss_pred             chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999943  3888999999999999999999988877899999999998643 4566788999999


Q ss_pred             ccCCc-------hHHHHHHhhCcHHHHHHHhhcCC-ChhHH-------HHHHHHHHHHccCChHHHHHHH----------
Q 009471          305 ISAVP-------EVRQMLAEEGIVSVMIKLLDCGI-LLGSK-------EYAAECLQNLTASNENLRRSVV----------  359 (534)
Q Consensus       305 La~~~-------~~~~~i~e~g~i~~L~~ll~~~~-~~~v~-------~~a~~~L~~La~~~~~~~~~i~----------  359 (534)
                      +....       +....|+..++.+.+-.+-+.+- ++++.       +.--.-...+++. ++....+.          
T Consensus       269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSF-DeY~sEl~sG~L~WSP~H  347 (442)
T KOG2759|consen  269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSF-DEYKSELRSGRLEWSPVH  347 (442)
T ss_pred             HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHhCCcCCCccc
Confidence            98754       34455666665555544443222 22222       2222223333331 11111111          


Q ss_pred             --------------h--cCChHHHHHhhcC---CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHH
Q 009471          360 --------------S--EGGIRSLLAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQ  418 (534)
Q Consensus       360 --------------~--~g~l~~L~~~L~~---~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~  418 (534)
                                    +  -..+..|+.+|+.   |.+...|+.=|+...+  |+....+...|+=..++++|.+++++|+.
T Consensus       348 k~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry  427 (442)
T KOG2759|consen  348 KSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY  427 (442)
T ss_pred             cccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH
Confidence                          1  1346778888864   6678889999999998  78888888899999999999999999999


Q ss_pred             HHHHHHHHhc
Q 009471          419 AAASALCRVC  428 (534)
Q Consensus       419 ~A~~aL~~la  428 (534)
                      +|+.++..+-
T Consensus       428 ~ALlavQ~lm  437 (442)
T KOG2759|consen  428 HALLAVQKLM  437 (442)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.3e-06  Score=79.55  Aligned_cols=354  Identities=15%  Similarity=0.168  Sum_probs=238.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHh----HHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN----VLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~----~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      +.+.|-.-|..++..+|.-++..+..++.+.+.+    ...+++.+..+.++..+..+|.++...|...+..++..+..-
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal  162 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL  162 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence            3455555566778888999999999998876633    234567889999999999999999999999999999999888


Q ss_pred             HHHHhcCCHHHH--HHHHccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHcc
Q 009471          231 NWLVSEGVLPPL--IRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNIS  306 (534)
Q Consensus       231 ~~l~~~g~i~~L--v~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa  306 (534)
                      +.++..+....+  .++--..+.-++......+..+.. +++.....-..|.+..|..-++. .|.-++..+......|+
T Consensus       163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa  242 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA  242 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence            888888766554  334444566678888888877754 45556666668888888777765 67778888999999999


Q ss_pred             CCchHHHHHHhhCcHHHHHHHhhcCCC-hhHHHHHHHHHHHHccCChHHHHHHHhcC-------ChHHHHHhh--cCCch
Q 009471          307 AVPEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENLRRSVVSEG-------GIRSLLAYL--DGPLP  376 (534)
Q Consensus       307 ~~~~~~~~i~e~g~i~~L~~ll~~~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g-------~l~~L~~~L--~~~~~  376 (534)
                      ..+..++.+..+|.|+.+..++...+. +--+..++.....+-. +... ..+..+.       .++..++++  ++|+.
T Consensus       243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg-keai-mdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG-KEAI-MDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc-chHH-hhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            988889999999999999999853332 1234444444444332 1111 0111111       133333443  34888


Q ss_pred             HHHHHHHHHHhhc-CccHHHHHhcCc--HHHHHHHHhcC-CHHHHHHHHHHHHHhcCC----h----h------HHHHHH
Q 009471          377 QESAVGALRNLVG-SVSQEVLISLGF--FPRLVHVLKAG-SLGAQQAAASALCRVCTS----A----E------MKKLVG  438 (534)
Q Consensus       377 ~~~a~~aL~~La~-~~~~~~l~~~~~--i~~Lv~lL~~~-~~~v~~~A~~aL~~la~~----~----~------~~~~i~  438 (534)
                      ++.|+.+++.+-+ .+..+.+..+|-  ..+++.-.-+. ...-|..+..+|.+++..    +    +      .+..+.
T Consensus       321 ieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif  400 (524)
T KOG4413|consen  321 IEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF  400 (524)
T ss_pred             HHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence            9999999999998 556666666553  33333333222 235567777888888753    1    1      111222


Q ss_pred             hc-------CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCC-C-CchhHHHHHHHHHH
Q 009471          439 EA-------GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP-S-PQNTAKKYAVACLA  509 (534)
Q Consensus       439 ~~-------g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~-~~~~~k~~a~~~L~  509 (534)
                      +.       .-...+..+++.+.++++..+...+..++..+...++++...+.+...+.--.. . -..+.|..+++++.
T Consensus       401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAia  480 (524)
T KOG4413|consen  401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA  480 (524)
T ss_pred             HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence            11       234456677778899999999999999999999999999887877765533221 1 12235555555554


Q ss_pred             h
Q 009471          510 S  510 (534)
Q Consensus       510 ~  510 (534)
                      +
T Consensus       481 e  481 (524)
T KOG4413|consen  481 E  481 (524)
T ss_pred             H
Confidence            4

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=2.4e-06  Score=80.74  Aligned_cols=292  Identities=19%  Similarity=0.222  Sum_probs=193.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh--cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ...++..+++.++.++..|+..+..+... . . +.+.  +...++.+.++++..++  .+.|+.+|.|++.++..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~-~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G-L-QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-c-h-hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence            45688889999999999999999999865 1 1 2222  23458888999988776  778889999999999888888


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-------CCChHHHHHHHccCCh--HHHHHHHHHHHH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-------HGGVRPLIEICQTGDS--VSQAAAACTLKN  304 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-------~g~i~~Lv~ll~~~~~--~~~~~a~~aL~n  304 (534)
                      .+. .+..++..+.+.........+..|.||+..++....+..       .|.++.....+..+-.  .--.+.+-++.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            777 778888888877666778889999999998777654432       3444455555654322  223567788999


Q ss_pred             ccCCchHHHHHHhhCcHHH--HHHHhhcCCChhH-HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHH
Q 009471          305 ISAVPEVRQMLAEEGIVSV--MIKLLDCGILLGS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAV  381 (534)
Q Consensus       305 La~~~~~~~~i~e~g~i~~--L~~ll~~~~~~~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~  381 (534)
                      |+..+..|..+.+...++.  +..+ .+.+. .+ +...++.|.|+|+..... ..+... .+..+-             
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s-~vRr~GvagtlkN~cFd~~~h-~~lL~e-~~~lLp-------------  221 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDS-QVRRGGVAGTLKNCCFDAKLH-EVLLDE-SINLLP-------------  221 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcc-cccch-hhhccchHHHHHhhhccchhH-HHHhcc-hHHHHH-------------
Confidence            9999999999888653332  2222 23232 34 556889999999854433 333331 122221             


Q ss_pred             HHHHHhhcCc--cHHHHHhcCcHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CC
Q 009471          382 GALRNLVGSV--SQEVLISLGFFPRLVHVLK-----AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AK  453 (534)
Q Consensus       382 ~aL~~La~~~--~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~  453 (534)
                      ..|.-++.+.  +.+.+  .+.-..| ++|.     ..++.+++.-..+|.-|+.....|+.+++.|+-+.+-.+=+ .+
T Consensus       222 ~iLlPlagpee~sEEdm--~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~  298 (353)
T KOG2973|consen  222 AILLPLAGPEELSEEDM--AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEE  298 (353)
T ss_pred             HHHhhcCCccccCHHHH--hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCC
Confidence            2222233311  11111  1222333 6663     45789999999999999999999999999886665555544 45


Q ss_pred             ChHHHHHHHHHHHHhcCCCc
Q 009471          454 PNSVREVAAQAISSLVTLPQ  473 (534)
Q Consensus       454 ~~~v~~~A~~aL~~L~~~~~  473 (534)
                      ++++++..-.....+....+
T Consensus       299 ded~~~ace~vvq~Lv~~e~  318 (353)
T KOG2973|consen  299 DEDIREACEQVVQMLVRLEP  318 (353)
T ss_pred             cHHHHHHHHHHHHHHHhccc
Confidence            67776665555555544333

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=4.6e-06  Score=78.92  Aligned_cols=260  Identities=17%  Similarity=0.205  Sum_probs=178.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH--hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471          239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV--GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA  316 (534)
Q Consensus       239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~--~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (534)
                      ...++.++.+.++.++..|..-+..++..  .-+.+.  +.-.++.+..++...++  -..|+.+|.|++..++.++.+.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            34578899999999999999999999876  222222  24456778888887666  5678999999999999999988


Q ss_pred             hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh-----cCChHHHHHhh-cC----CchHHHHHHHHHH
Q 009471          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-----EGGIRSLLAYL-DG----PLPQESAVGALRN  386 (534)
Q Consensus       317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-----~g~l~~L~~~L-~~----~~~~~~a~~aL~~  386 (534)
                      .. .+..++..+.++.. ..-...+..|.|++..++........     ..++..++... +.    ..--....-++.|
T Consensus        81 ~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            87 88888888887766 67888999999999977665543332     13444444443 33    1224556778888


Q ss_pred             hhc-CccHHHHHhcCc--HHHHHHHHhcCCHHHH-HHHHHHHHHhcCChhHHHHHHhcCchHHHH---------------
Q 009471          387 LVG-SVSQEVLISLGF--FPRLVHVLKAGSLGAQ-QAAASALCRVCTSAEMKKLVGEAGCTPLLI---------------  447 (534)
Q Consensus       387 La~-~~~~~~l~~~~~--i~~Lv~lL~~~~~~v~-~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv---------------  447 (534)
                      |++ ...+..+.+...  ...++.+ .+.+..++ ...+++|.|.+....+...+...+ +..|.               
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~-~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDES-INLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcch-HHHHHHHHhhcCCccccCHH
Confidence            887 555655555442  2223333 33445555 456788888887655555544422 22222               


Q ss_pred             ---------Hhhc-----CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCC-chhHHHHHHHHH
Q 009471          448 ---------KLLE-----AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP-QNTAKKYAVACL  508 (534)
Q Consensus       448 ---------~ll~-----~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~~~k~~a~~~L  508 (534)
                               +++.     .+++.+|.+-.++|..|+....+|+.+..  .++.++++.++... +++++..+-...
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~--kgvYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS--KGVYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh--cCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence                     3332     35689999999999999999999887765  78899999998874 444555544433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.57  E-value=4.5e-06  Score=82.84  Aligned_cols=241  Identities=19%  Similarity=0.194  Sum_probs=176.4

Q ss_pred             HHHHHhCCChHHHHHHHccCChHH--HHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471          271 ARAIVGHGGVRPLIEICQTGDSVS--QAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~~~~~~--~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La  348 (534)
                      +..+...|++..|++++..++.+.  +..|...|..+.. .++++.++..| +..++.+.+...+.+.+...+.+|.++-
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            345666899999999999876654  7888888887664 47888888866 6666666655555578899999999999


Q ss_pred             cCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc---CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 009471          349 ASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA  423 (534)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~a  423 (534)
                      .+++...+.++..|+++.++-..+.  |.+..+|.-+|+|++.   ......+++...-+.|+.+-.+.+.-.+..||.+
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA  330 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA  330 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence            9999999999999999998887754  7888999999999997   3556788898899999998888888999999999


Q ss_pred             HHHhcCChhHHHHHHhcCc---hHHHHHh----------------------------hcCCChHHHHHHHHHHHHhc--C
Q 009471          424 LCRVCTSAEMKKLVGEAGC---TPLLIKL----------------------------LEAKPNSVREVAAQAISSLV--T  470 (534)
Q Consensus       424 L~~la~~~~~~~~i~~~g~---v~~Lv~l----------------------------l~~~~~~v~~~A~~aL~~L~--~  470 (534)
                      ++.++.+.++-+.+...|.   +++|+..                            +++..-+.|..++.-++.=+  .
T Consensus       331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIK  410 (832)
T KOG3678|consen  331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIK  410 (832)
T ss_pred             HhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHH
Confidence            9999988776666655553   2333333                            33222222222222222111  1


Q ss_pred             CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ...+.-..+++-|.+..|-++..+. ++..-++|..+|+-+-+.
T Consensus       411 s~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  411 SLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE  453 (832)
T ss_pred             HhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence            2345556677778888888887754 556778888888877655

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.4e-05  Score=84.01  Aligned_cols=311  Identities=16%  Similarity=0.142  Sum_probs=204.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHH-HH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMAR-AI  274 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~-~l  274 (534)
                      ++.+-+-++++|..-|+.|+.+++.+-..++ .+..=...+++|.++.++.+.+-.++..++|+|..++.. ++.+. ..
T Consensus       366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~  445 (859)
T KOG1241|consen  366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE  445 (859)
T ss_pred             HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh
Confidence            3333335677889999999999999987765 444445668899999999999999999999999999875 32221 12


Q ss_pred             HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-----hH-HHHHHh---hCcHHHHHHHhh--cCCChhHHHHHHHH
Q 009471          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-----EV-RQMLAE---EGIVSVMIKLLD--CGILLGSKEYAAEC  343 (534)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-----~~-~~~i~e---~g~i~~L~~ll~--~~~~~~v~~~a~~~  343 (534)
                      .-.+.++.++.-+. ..|.+-..+||++.+|+..-     .+ .....+   ..++..|++.-.  +++....|..+..+
T Consensus       446 ~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA  524 (859)
T KOG1241|consen  446 LLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA  524 (859)
T ss_pred             hhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence            22344555655554 47889999999999998421     11 111111   123334444432  33434679999999


Q ss_pred             HHHHccCChHHHHHHHhcC---ChHHHHH-----hhcC------CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHH
Q 009471          344 LQNLTASNENLRRSVVSEG---GIRSLLA-----YLDG------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVH  407 (534)
Q Consensus       344 L~~La~~~~~~~~~i~~~g---~l~~L~~-----~L~~------~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~  407 (534)
                      |+.+....+...-.++..-   ....|-+     .+..      .+++..-+.+|..+.+  ...... ....++..+++
T Consensus       525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~-~~d~iM~lflr  603 (859)
T KOG1241|consen  525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE-VSDQIMGLFLR  603 (859)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHHH
Confidence            9999875543222221110   1111111     2211      2456777888888876  222222 23446788888


Q ss_pred             HHhc-CCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcCC-CcchHHHHhhC
Q 009471          408 VLKA-GSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTL-PQNCREVKRDD  482 (534)
Q Consensus       408 lL~~-~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~  482 (534)
                      ++++ ++..+++.|..+++.++.+  ..+.+++  ..+.|.|..-++ ..+..+...|.+....|+.. ..+...+..  
T Consensus       604 i~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d--  679 (859)
T KOG1241|consen  604 IFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD--  679 (859)
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH--
Confidence            8887 5567899999999999865  6777777  557888877774 55677888888888888744 334344433  


Q ss_pred             CCHHHHHhhcCCCC-chhHHHHHHHHHHhhchh
Q 009471          483 KSVPNLVQLLDPSP-QNTAKKYAVACLASLSPS  514 (534)
Q Consensus       483 ~~v~~Lv~lL~~~~-~~~~k~~a~~~L~~L~~~  514 (534)
                      ..+..|++.|.++. ...+|-..++++..++..
T Consensus       680 ~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla  712 (859)
T KOG1241|consen  680 ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA  712 (859)
T ss_pred             HHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence            67788999999872 345888888888888766

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=2.8e-05  Score=80.52  Aligned_cols=336  Identities=15%  Similarity=0.108  Sum_probs=210.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHH-HHHHHHHHHHHhhcCCchhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPR-IREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~-v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ..+.+.+.+.+++...+..+...+..+..+..-  ..+.+.+.+..|.+.+.+.... -++.+.-+......+-.   ..
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~  209 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PP  209 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CC
Confidence            455566667777888888888888888765542  2445567888888888776533 33323222222222111   11


Q ss_pred             HhcCCHHHHHHH---HccCCHHHHHHHHHHHHHhhcC-h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          234 VSEGVLPPLIRL---VESGSTVGKEKATISLQRLSMS-A-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       234 ~~~g~i~~Lv~l---L~~~~~~~~~~A~~~L~~Ls~~-~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                      ++..+++.+-.+   ..+....++..|..+...+-.. + .....+     ++.++.-+.+..|..+.+++..|..++..
T Consensus       210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~l-----lpsll~~l~~~kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLL-----LPSLLGSLLEAKWRTKMASLELLGAMADC  284 (569)
T ss_pred             CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHh-----hhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            233334444444   4455777888777776665322 2 222222     25555444445888999999999998876


Q ss_pred             chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc--CChHHHHHHHhcCChHHHHHhhcCCc-hHHHHHHHHH
Q 009471          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPL-PQESAVGALR  385 (534)
Q Consensus       309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~~L~~~~-~~~~a~~aL~  385 (534)
                      ...+-......++|.+.+.+.+..+ ++++.+..+|..++.  .++...      ..++.|++.+.+|. ....++..|+
T Consensus       285 ap~qLs~~lp~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~~~~~e~~~~L~  357 (569)
T KOG1242|consen  285 APKQLSLCLPDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPSCYTPECLDSLG  357 (569)
T ss_pred             chHHHHHHHhHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcccchHHHHHhhc
Confidence            6555566668899999999998887 899999999999987  233322      13778888888876 5666666666


Q ss_pred             Hhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh----HHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471          386 NLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE----MKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (534)
Q Consensus       386 ~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~----~~~~i~~~g~v~~Lv~ll~~~~~~v~~~  460 (534)
                      .=.. ...... .-.-++|.|-+-+...+....+.++.++.|++.--+    ....+  ...+|.|-..+....|++|..
T Consensus       358 ~ttFV~~V~~p-sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR~v  434 (569)
T KOG1242|consen  358 ATTFVAEVDAP-SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVRAV  434 (569)
T ss_pred             ceeeeeeecch-hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHHHH
Confidence            5544 111000 001135556666677788899999999999996422    22333  224556666666678999999


Q ss_pred             HHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          461 AAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       461 A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +..+|+.+.....+...    .+.++.+...+.+......+..+...|..+..+
T Consensus       435 aarAL~~l~e~~g~~~f----~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~  484 (569)
T KOG1242|consen  435 AARALGALLERLGEVSF----DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG  484 (569)
T ss_pred             HHHHHHHHHHHHHhhcc----cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence            99999988655444332    355666776665543333444555555444443

>TIGR02270 conserved hypothetical protein

Probab=98.37  E-value=6.9e-05  Score=76.73  Aligned_cols=218  Identities=16%  Similarity=0.091  Sum_probs=139.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhC
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH  277 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~  277 (534)
                      +..|+..|.+.++.++..++.+|+.+-.          ....+.|+.+|++.++.++..+..++....           .
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------H  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------c
Confidence            6778888887777788888888865432          234677778888888877777766665522           1


Q ss_pred             CChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHH
Q 009471          278 GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS  357 (534)
Q Consensus       278 g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~  357 (534)
                      ...+.+..++++.++.++..++.+|..+..          ...++.|...+.+.++ .++..|+.++..+..  +.    
T Consensus       147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~-~VR~aA~~al~~lG~--~~----  209 (410)
T TIGR02270       147 DPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDP-EVRFAALEAGLLAGS--RL----  209 (410)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCH-HHHHHHHHHHHHcCC--Hh----
Confidence            123567777888888888888888876553          3445556666666665 788888888866643  21    


Q ss_pred             HHhcCChHHHHHhhcC-CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHH
Q 009471          358 VVSEGGIRSLLAYLDG-PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKL  436 (534)
Q Consensus       358 i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~  436 (534)
                           .+..+..+... ...+...+.++..+..        ....++.|..+++...  ++..++.+++.+..       
T Consensus       210 -----A~~~l~~~~~~~g~~~~~~l~~~lal~~--------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------  267 (410)
T TIGR02270       210 -----AWGVCRRFQVLEGGPHRQRLLVLLAVAG--------GPDAQAWLRELLQAAA--TRREALRAVGLVGD-------  267 (410)
T ss_pred             -----HHHHHHHHHhccCccHHHHHHHHHHhCC--------chhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------
Confidence                 13344443322 2222222222222222        1246777888876644  88888888887764       


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471          437 VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR  480 (534)
Q Consensus       437 i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (534)
                         ...++.|++.+....  ++..|.+++..|.+-.-....+..
T Consensus       268 ---p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~l~~~~l~~  306 (410)
T TIGR02270       268 ---VEAAPWCLEAMREPP--WARLAGEAFSLITGMDVALEELAG  306 (410)
T ss_pred             ---cchHHHHHHHhcCcH--HHHHHHHHHHHhhCCCcchhhhcc
Confidence               356888888887443  888899999888766555455543

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.35  E-value=6.7e-06  Score=68.31  Aligned_cols=131  Identities=18%  Similarity=0.130  Sum_probs=111.9

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009471          198 IAALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG  276 (534)
Q Consensus       198 v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~  276 (534)
                      +..|+.-. ...+.+.++....-|.|++.++.+...+.+.++++.++..|+..+..+.+.+...|+|+|.++.++..|.+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e   97 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE   97 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH
Confidence            44444332 34578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHh
Q 009471          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLL  328 (534)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll  328 (534)
                      .+|++..+..+.++...+...++.++..|+..+ ..+..+....++..+...-
T Consensus        98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen   98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            999999999999988888999999999999865 5666666666666655443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.35  E-value=0.00019  Score=72.67  Aligned_cols=326  Identities=17%  Similarity=0.146  Sum_probs=212.2

Q ss_pred             HHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC--CHH
Q 009471          175 LDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG--STV  252 (534)
Q Consensus       175 ~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~  252 (534)
                      +..|..+.+..+.-+..+.-....+.+..++-+++.++|..+.+++..+..+.+.-..+.+.++--.+++-|..+  +..
T Consensus         4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~   83 (371)
T PF14664_consen    4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV   83 (371)
T ss_pred             HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence            456677777777554444333345555544444459999999999999999999888999999888888888765  444


Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC
Q 009471          253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI  332 (534)
Q Consensus       253 ~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~  332 (534)
                      -+++|...+..+...+..... ...|.+..++.+..+.++..+..|..+|+.++..  +-+.+.+.|++..+++.+-++.
T Consensus        84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~  160 (371)
T PF14664_consen   84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGS  160 (371)
T ss_pred             HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhcc
Confidence            678999999888665333222 2456679999999999999999999999999873  2245567999999999998877


Q ss_pred             ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC-----------chHHHHHHHHHHhhcC-ccHHHHH-h-
Q 009471          333 LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP-----------LPQESAVGALRNLVGS-VSQEVLI-S-  398 (534)
Q Consensus       333 ~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~-----------~~~~~a~~aL~~La~~-~~~~~l~-~-  398 (534)
                      . +..+..+.++..+-. ++..|+.+...--++.++.-+.+.           +....+..++..+-++ ..--.+. + 
T Consensus       161 ~-~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~  238 (371)
T PF14664_consen  161 F-SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND  238 (371)
T ss_pred             H-hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            6 688888888888886 667776665545566666654331           1223344444444331 1111111 1 


Q ss_pred             cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH------HHhcCchHHHHHhh----------cC---CChH-
Q 009471          399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL------VGEAGCTPLLIKLL----------EA---KPNS-  456 (534)
Q Consensus       399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~------i~~~g~v~~Lv~ll----------~~---~~~~-  456 (534)
                      ...+..|+..|..+++.++......+..+-+-  +.....      +...|.+..-.++-          ..   +..+ 
T Consensus       239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l  318 (371)
T PF14664_consen  239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNL  318 (371)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccH
Confidence            24688899999999999999999999988642  221111      11112210001111          00   0111 


Q ss_pred             HHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHH
Q 009471          457 VREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR  516 (534)
Q Consensus       457 v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k  516 (534)
                      +..+.+-.+.-           +-+.|.++.|+++...+++......|...|..+-.-+.
T Consensus       319 ~~~y~aLll~i-----------li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~  367 (371)
T PF14664_consen  319 VNHYLALLLAI-----------LIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLAS  367 (371)
T ss_pred             HHHHHHHHHHH-----------HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            11222222222           23579999999999998666788888888877655443

>TIGR02270 conserved hypothetical protein

Probab=98.32  E-value=0.00011  Score=75.22  Aligned_cols=210  Identities=16%  Similarity=0.029  Sum_probs=153.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS  235 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (534)
                      +..++..|...++.++..++.+|..+-           ..+..+.|+.+|++.++.+|..++.++....           
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence            677777777777777877777776532           2356888999999999999998887777632           


Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (534)
                      ....+.+..+|++.++.++..|+.+|..+..          ...++.|...+.+.++.++..|++++..+..        
T Consensus       146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--------  207 (410)
T TIGR02270       146 HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--------  207 (410)
T ss_pred             cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence            2236789999999999999999999999754          3445678888999999999999999976643        


Q ss_pred             HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHH
Q 009471          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEV  395 (534)
Q Consensus       316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~  395 (534)
                        ..++..+..+...... ........++... . ++         ..++.|..+++++.++..++.+++.+-.      
T Consensus       208 --~~A~~~l~~~~~~~g~-~~~~~l~~~lal~-~-~~---------~a~~~L~~ll~d~~vr~~a~~AlG~lg~------  267 (410)
T TIGR02270       208 --RLAWGVCRRFQVLEGG-PHRQRLLVLLAVA-G-GP---------DAQAWLRELLQAAATRREALRAVGLVGD------  267 (410)
T ss_pred             --HhHHHHHHHHHhccCc-cHHHHHHHHHHhC-C-ch---------hHHHHHHHHhcChhhHHHHHHHHHHcCC------
Confidence              2345555553333332 2333333333332 1 22         3477888899888899999999998764      


Q ss_pred             HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                         ...++.|+..+....  +...|..++..|+.-
T Consensus       268 ---p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       268 ---VEAAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             ---cchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence               346788888885443  999999999999864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=0.00033  Score=73.92  Aligned_cols=343  Identities=15%  Similarity=0.145  Sum_probs=209.0

Q ss_pred             HhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc------------hh
Q 009471          163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS------------CE  230 (534)
Q Consensus       163 L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~------------~~  230 (534)
                      -++.|.+.+..|+..|..+..-.-++...-++....+.-+.-++++++++...+++.=++++..+-            ..
T Consensus       226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~  305 (859)
T KOG1241|consen  226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGL  305 (859)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            367788889999999999876443333333343445555667788899999999999888876431            00


Q ss_pred             ----HHHH---hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHH
Q 009471          231 ----NWLV---SEGVLPPLIRLVESG-------STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVS  294 (534)
Q Consensus       231 ----~~l~---~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~  294 (534)
                          ..+.   -.+++|.|+++|...       +......|..+|.-++..  ++...     .+++-+-+-++++|+.-
T Consensus       306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-----~Vl~Fiee~i~~pdwr~  380 (859)
T KOG1241|consen  306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-----HVLPFIEENIQNPDWRN  380 (859)
T ss_pred             CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-----hhHHHHHHhcCCcchhh
Confidence                1111   125778888888652       223444555556555432  22111     12233334677899999


Q ss_pred             HHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHH-HHHhcCChHHHHHhhc
Q 009471          295 QAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR-SVVSEGGIRSLLAYLD  372 (534)
Q Consensus       295 ~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~-~i~~~g~l~~L~~~L~  372 (534)
                      +..++.++..+-.++ ..+-.=...++++.++.++.++.. -++..+.++++.++...++.+. ...-...++.+++-|.
T Consensus       381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl-~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~  459 (859)
T KOG1241|consen  381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL-WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN  459 (859)
T ss_pred             hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh-hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence            999999999998877 334444457889999999986665 6889999999999986554321 1223345666777666


Q ss_pred             C-CchHHHHHHHHHHhhc--C----cc-HHHHHhcCcHHHHHHH-Hh-----c-CCHHHHHHHHHHHHHhcCC-hhHH-H
Q 009471          373 G-PLPQESAVGALRNLVG--S----VS-QEVLISLGFFPRLVHV-LK-----A-GSLGAQQAAASALCRVCTS-AEMK-K  435 (534)
Q Consensus       373 ~-~~~~~~a~~aL~~La~--~----~~-~~~l~~~~~i~~Lv~l-L~-----~-~~~~v~~~A~~aL~~la~~-~~~~-~  435 (534)
                      + |.+-.+++|++.+|+.  .    .+ ...... .+.+.++.- +.     + .....|..|-.+|..+..+ ++.. .
T Consensus       460 DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~  538 (859)
T KOG1241|consen  460 DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP  538 (859)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence            5 8999999999999995  1    11 001111 233444433 22     1 2357888999999999865 3322 2


Q ss_pred             HHHhc--CchHHHHHhhc-----C----CChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchhHHHH
Q 009471          436 LVGEA--GCTPLLIKLLE-----A----KPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY  503 (534)
Q Consensus       436 ~i~~~--g~v~~Lv~ll~-----~----~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~  503 (534)
                      .+...  -.+..|-+.++     .    ...+++..-+..|..+... .+..++...  ..+..+++++++..+..+..-
T Consensus       539 ~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d--~iM~lflri~~s~~s~~v~e~  616 (859)
T KOG1241|consen  539 MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD--QIMGLFLRIFESKRSAVVHEE  616 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH--HHHHHHHHHHcCCccccchHH
Confidence            22110  01111222221     1    1255677777777777633 444444433  567788899998533345555


Q ss_pred             HHHHHHhhchh
Q 009471          504 AVACLASLSPS  514 (534)
Q Consensus       504 a~~~L~~L~~~  514 (534)
                      |..++..|+.+
T Consensus       617 a~laV~tl~~~  627 (859)
T KOG1241|consen  617 AFLAVSTLAES  627 (859)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=3.9e-06  Score=84.66  Aligned_cols=270  Identities=16%  Similarity=0.146  Sum_probs=184.3

Q ss_pred             HHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh
Q 009471          190 LAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA  268 (534)
Q Consensus       190 ~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~  268 (534)
                      .-+.+...++.|+++|+.++..+.--+...++++.-. +.-+..+.+.|++..|+.++.+.+..++....|.|+++-.+.
T Consensus       425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3445667899999999998777777778888888654 447888999999999999999988899999999999997764


Q ss_pred             hh--HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc----hHHHHHHh----hCcHHHHHHHhhcCCChhHHH
Q 009471          269 EM--ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP----EVRQMLAE----EGIVSVMIKLLDCGILLGSKE  338 (534)
Q Consensus       269 ~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~----~~~~~i~e----~g~i~~L~~ll~~~~~~~v~~  338 (534)
                      ++  +-.+.+..|+..++.++.++...++..+...|+|+..+.    +.+..+..    .-....+++.++..++.+ ..
T Consensus       505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~-i~  583 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME-IL  583 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh-hh
Confidence            43  456778899999999999999999999999999998743    22222211    124566777777777744 45


Q ss_pred             HHHHHHHHHccCChHHHHHHH-hcCChHHHHHhhcC--------Cc-----hHHHHHHHHHHhhcCccHHHHHhcCcHHH
Q 009471          339 YAAECLQNLTASNENLRRSVV-SEGGIRSLLAYLDG--------PL-----PQESAVGALRNLVGSVSQEVLISLGFFPR  404 (534)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L~~--------~~-----~~~~a~~aL~~La~~~~~~~l~~~~~i~~  404 (534)
                      ..+..|.+++..++..+..+. ++..+..+..+|..        |+     +.-+-.....++..+        .+...+
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~--------~d~f~r  655 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN--------SDKFKR  655 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccccc--------cccccc
Confidence            557888888888888887766 44555555555532        11     111111222222210        112222


Q ss_pred             HHH------HHh----cCCHHHHHHHHHHHHHhcCC----h------hHHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 009471          405 LVH------VLK----AGSLGAQQAAASALCRVCTS----A------EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA  464 (534)
Q Consensus       405 Lv~------lL~----~~~~~v~~~A~~aL~~la~~----~------~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~a  464 (534)
                      .+.      -.+    ..+.+.-.+..|.+.|+.-.    +      +-.+.+.+.|+-+.|+++....++.+|+.+-.+
T Consensus       656 ~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~ta  735 (743)
T COG5369         656 LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTA  735 (743)
T ss_pred             ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHH
Confidence            221      111    12345667777877776532    1      344556667766677777777888999999999


Q ss_pred             HHHh
Q 009471          465 ISSL  468 (534)
Q Consensus       465 L~~L  468 (534)
                      |.++
T Consensus       736 L~~l  739 (743)
T COG5369         736 LENL  739 (743)
T ss_pred             HHhh
Confidence            9887

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.0011  Score=70.61  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=83.8

Q ss_pred             hhhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 009471          148 AEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG  227 (534)
Q Consensus       148 ~~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~  227 (534)
                      +.|-.+...++.-+.++..++..|.+|+-+...+....|+...     -.++..-++|.+.+..|...++..+..++...
T Consensus       136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~  210 (866)
T KOG1062|consen  136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----HFVIAFRKLLCEKHHGVLIAGLHLITELCKIS  210 (866)
T ss_pred             CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence            3455667777777888999999999999999999888776543     34667777787777778888888888887764


Q ss_pred             c-hhHHHHhcCCHHHHHHHHcc---------------CCHHHHHHHHHHHHHhhcChhhH
Q 009471          228 S-CENWLVSEGVLPPLIRLVES---------------GSTVGKEKATISLQRLSMSAEMA  271 (534)
Q Consensus       228 ~-~~~~l~~~g~i~~Lv~lL~~---------------~~~~~~~~A~~~L~~Ls~~~~~~  271 (534)
                      + .-..+.+  .++.++..|+.               .+|.++....+.|.-|..++...
T Consensus       211 ~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~da  268 (866)
T KOG1062|consen  211 PDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADA  268 (866)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccH
Confidence            3 2222222  56667776652               36778888888888887765443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00023  Score=72.62  Aligned_cols=314  Identities=17%  Similarity=0.172  Sum_probs=193.0

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHh---------------------------------HHHHhcC-C-
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN---------------------------------VLAVMGR-S-  196 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~---------------------------------~~~i~~~-g-  196 (534)
                      ....+++.+.+....+...+..|+++|.++++-....                                 .+.++.+ . 
T Consensus        82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~  161 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS  161 (675)
T ss_pred             HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence            4566788888888888888888998887765421110                                 0122211 1 


Q ss_pred             --cHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh
Q 009471          197 --NIAALVQLLTA----TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM  270 (534)
Q Consensus       197 --~v~~Lv~lL~~----~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~  270 (534)
                        .++.++.+|+.    .++..|...+.-|..|-..++..-.-.-...++-|...|.+++.+++..+-.++.++-..-.+
T Consensus       162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s  241 (675)
T KOG0212|consen  162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS  241 (675)
T ss_pred             ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence              14455555543    467788888887777766554221111234678888999999999997776665554321111


Q ss_pred             HHHHHh-CCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHH---HHH
Q 009471          271 ARAIVG-HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAEC---LQN  346 (534)
Q Consensus       271 ~~~l~~-~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~---L~~  346 (534)
                      .....+ ...++.++..++++++.++..|..-+.....-+...-...-.|++..++..+.+......++.+...   +..
T Consensus       242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~  321 (675)
T KOG0212|consen  242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK  321 (675)
T ss_pred             CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence            111112 3456888999999999999888776666655332222222366677777777655542344444322   333


Q ss_pred             HccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 009471          347 LTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA  423 (534)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~a  423 (534)
                      +.. .+...+.+--...++.+.+.+.+  .+++..++.-+..|-. ..+.-......+.+.|+.-|.+.+..|...+...
T Consensus       322 l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l  400 (675)
T KOG0212|consen  322 LVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL  400 (675)
T ss_pred             HHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence            332 12222121112345666667755  5677777777777766 4444445567789999999999999999999999


Q ss_pred             HHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          424 LCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       424 L~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      +.++|.+++....   -.++..|.++......-+..++.-++..|+
T Consensus       401 la~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC  443 (675)
T KOG0212|consen  401 LASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC  443 (675)
T ss_pred             HHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence            9999987544322   123445555555555556777888888876

>PF05536 Neurochondrin: Neurochondrin

Probab=98.21  E-value=0.0001  Score=78.63  Aligned_cols=230  Identities=19%  Similarity=0.182  Sum_probs=163.2

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH---hHHHHhcCCcHHHHHHHhcC-------CCHHHHHHHHHHHHHhh
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEK---NVLAVMGRSNIAALVQLLTA-------TSPRIREKTVTVICSLA  224 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~---~~~~i~~~g~v~~Lv~lL~~-------~~~~v~~~A~~~L~~La  224 (534)
                      .+.+.+..|+..+.+.|..++.-+.+++..++.   .++.+.+.=|.+.|-++|++       +....+..|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            478889999999988899999999999886663   33456677778899999987       23678899999999999


Q ss_pred             cCCch--hHHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          225 ESGSC--ENWLVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       225 ~~~~~--~~~l~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                      .+++.  ...++  +-||.|++++.+.+. .+...+..+|..++.+++.+..+.+.|+++.|++.+.+ .+.....+..+
T Consensus        86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            97762  23333  459999999988776 89999999999999999999999999999999999987 66677888888


Q ss_pred             HHHccCCchHHHHHHh-----hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH-HHHHHhcCChHH----HHHhh
Q 009471          302 LKNISAVPEVRQMLAE-----EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL-RRSVVSEGGIRS----LLAYL  371 (534)
Q Consensus       302 L~nLa~~~~~~~~i~e-----~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~-~~~i~~~g~l~~----L~~~L  371 (534)
                      |.++....+.. ...+     ..+++.+...+..... ..+...+..|..+-...+.. ........-++.    +..++
T Consensus       163 L~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~-~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  163 LLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHG-EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            88877633211 1111     2345556666655554 56777788888887644211 111222233333    33444


Q ss_pred             cC---CchHHHHHHHHHHhhc
Q 009471          372 DG---PLPQESAVGALRNLVG  389 (534)
Q Consensus       372 ~~---~~~~~~a~~aL~~La~  389 (534)
                      ++   +.-|..++....++..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            44   3456666666666554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.0014  Score=69.74  Aligned_cols=317  Identities=14%  Similarity=0.136  Sum_probs=164.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC
Q 009471          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG  237 (534)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g  237 (534)
                      +.+..+.+++--.|+-.--+..-++.++.+....     .+..+.+=|++++.-+.-.|+.+|++++..+-.|+      
T Consensus        74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllL-----ltNslknDL~s~nq~vVglAL~alg~i~s~Emard------  142 (866)
T KOG1062|consen   74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLL-----LTNSLKNDLNSSNQYVVGLALCALGNICSPEMARD------  142 (866)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHH-----HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHH------
Confidence            3455666666555555444444444444332211     14455555677888899999999999987665544      


Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHH
Q 009471          238 VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQML  315 (534)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i  315 (534)
                      +.|-+.++|+..++.++..|+-|...+-.. ++....|     ++....+|.+.+..+...+...+..++.. ++.-..+
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~f  217 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYF  217 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHH
Confidence            367788899999999999999888887554 3333333     24455555555555555555555555542 3333333


Q ss_pred             HhhCcHHHHHHHhh----cCC----------ChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--------
Q 009471          316 AEEGIVSVMIKLLD----CGI----------LLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--------  373 (534)
Q Consensus       316 ~e~g~i~~L~~ll~----~~~----------~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--------  373 (534)
                      .+  .++-++..|+    .+-          ++-.|...+..|+-+-.++++..+.+.     +.|-++..+        
T Consensus       218 r~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN~G  290 (866)
T KOG1062|consen  218 RD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKNAG  290 (866)
T ss_pred             HH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhcccccccch
Confidence            32  3333444333    111          114566666666666665554443332     122222221        


Q ss_pred             CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC
Q 009471          374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA  452 (534)
Q Consensus       374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~  452 (534)
                      ..+...|+.++..+-.+..-..    -.+..|-++|.+.+..++..|+..|...... +...+.   +  =..+++.+++
T Consensus       291 nAILYE~V~TI~~I~~~~~Lrv----lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~D  361 (866)
T KOG1062|consen  291 NAILYECVRTIMDIRSNSGLRV----LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKD  361 (866)
T ss_pred             hHHHHHHHHHHHhccCCchHHH----HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcC
Confidence            1123333333333332111100    1244455555555555555555555555532 111100   0  1233455666


Q ss_pred             CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          453 KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       453 ~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++..++.+|++.++.| .+..|.+.+++      .|+..|+.. +++.|...+.-+..+++.
T Consensus       362 pD~SIkrralELs~~l-vn~~Nv~~mv~------eLl~fL~~~-d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  362 PDVSIKRRALELSYAL-VNESNVRVMVK------ELLEFLESS-DEDFKADIASKIAELAEK  415 (866)
T ss_pred             CcHHHHHHHHHHHHHH-hccccHHHHHH------HHHHHHHhc-cHHHHHHHHHHHHHHHHh
Confidence            6666666666655555 45555444443      244444444 334555555555555443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00015  Score=76.80  Aligned_cols=334  Identities=17%  Similarity=0.134  Sum_probs=186.3

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      ..-.+.++...++.+++.+|..+.....++-..++   ..+.+.|.++.|-.++.++++.+...|+.+|..+.+...+..
T Consensus       119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~  195 (734)
T KOG1061|consen  119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN  195 (734)
T ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence            44567888889999999999999998888876555   456678999999999999999999999999999987664311


Q ss_pred             -HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          232 -WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       232 -~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                       .....-.+..++..+...+...+.....++.+=...++ ....++     ..+...+.+.++.+...+..++.++....
T Consensus       196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~-----~r~~p~Lqh~n~avvlsavKv~l~~~~~~  270 (734)
T KOG1061|consen  196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDIC-----ERLTPRLQHANSAVVLSAVKVILQLVKYL  270 (734)
T ss_pred             cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHH-----HHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence             11111123333344443333333333333333323333 233443     56666677777777777777777776533


Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG  389 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~  389 (534)
                      ...........-+.++-++..+.  +.+..++.-+..+-...+..    +....---++++.+.--++..=+.++..++.
T Consensus       271 ~~~~~~~~~K~~~pl~tlls~~~--e~qyvaLrNi~lil~~~p~~----~~~~~~~Ff~kynDPiYvK~eKleil~~la~  344 (734)
T KOG1061|consen  271 KQVNELLFKKVAPPLVTLLSSES--EIQYVALRNINLILQKRPEI----LKVEIKVFFCKYNDPIYVKLEKLEILIELAN  344 (734)
T ss_pred             HHHHHHHHHHhcccceeeecccc--hhhHHHHhhHHHHHHhChHH----HHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence            22223333445556666665544  46665555554444433321    1100000001111111234444555555554


Q ss_pred             CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      ..+..+     ++.-+...-..-+.+..+.+.+++++++...+-.     .+++..|+++++.+-..+...+...++.+.
T Consensus       345 ~~nl~q-----vl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dil  414 (734)
T KOG1061|consen  345 DANLAQ-----VLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDIL  414 (734)
T ss_pred             HhHHHH-----HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence            322222     3444445555556677777777777776431111     566777777777555555556666666666


Q ss_pred             CCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       470 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ..-++.-+     ..+..+...+++=.+++.|.+-+|.+.--+..
T Consensus       415 RkyP~~~~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~  454 (734)
T KOG1061|consen  415 RKYPNKYE-----SVVAILCENLDSLQEPEAKAALIWILGEYAER  454 (734)
T ss_pred             hcCCCchh-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence            44333211     12233334444433445666666666655544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0016  Score=69.14  Aligned_cols=139  Identities=13%  Similarity=0.162  Sum_probs=95.0

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      ...+++..+....+.+.+.|.-.--.|...+.++++-  .+   =-|..+-+-|+++++.+|..|+++|..+-.      
T Consensus        69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--AL---LSIntfQk~L~DpN~LiRasALRvlSsIRv------  137 (968)
T KOG1060|consen   69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--AL---LSINTFQKALKDPNQLIRASALRVLSSIRV------  137 (968)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc--ee---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch------
Confidence            4557888888889999999988888888888776643  11   238889999999999999999999876521      


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (534)
                      .++..=++-.+-+...+..+.+|..|+.++-.|= .+++.+.++.     ..+-.+|.+.+|.+...|+.+...+|
T Consensus       138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhc
Confidence            1111112233334455678889999999998883 4455454443     55556677776666655555554444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=4.4e-05  Score=77.72  Aligned_cols=312  Identities=15%  Similarity=0.146  Sum_probs=202.4

Q ss_pred             CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh--hhHH
Q 009471          195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMAR  272 (534)
Q Consensus       195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--~~~~  272 (534)
                      ++.+++.+..+.+++..+|-.|+..+.+++.-........-..+...+.++..+.+..++. ++..|-.+-.+-  +...
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~  161 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAS  161 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccccc
Confidence            3779999999999999999999999999986544333333344577788888777776664 555665554321  1121


Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH----c
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL----T  348 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L----a  348 (534)
                      .|.-.+.||.|-+.+...+|..|.....-|.-|-..|+....=.-...++-|+..|.+.++ +++..+=.+|.++    .
T Consensus       162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~-eVr~~~~t~l~~fL~eI~  240 (675)
T KOG0212|consen  162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSD-EVRTLTDTLLSEFLAEIR  240 (675)
T ss_pred             ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHh
Confidence            3333445566666666778999988888887776666432221225677888899988887 7886655544443    3


Q ss_pred             cCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHH-HHHHHH---
Q 009471          349 ASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLG-AQQAAA---  421 (534)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~-v~~~A~---  421 (534)
                      +.....    --...++.++.-+.+  +.+|..|+.-|..+.. +...-...-.|++..++.++.+.++. ++..+.   
T Consensus       241 s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  241 SSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             cCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            322211    123346666666655  5678888888877776 32222233456677777777665542 333332   


Q ss_pred             HHHHHhcCChhHHHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471          422 SALCRVCTSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTA  500 (534)
Q Consensus       422 ~aL~~la~~~~~~~~i~~~-g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~  500 (534)
                      ..+..+...+.....+ +. ..+..|.+.+.+...+.|..++.-+..|-...+|.-.... +.....|+.-|... +.++
T Consensus       317 ~~l~~l~s~~~~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~-sd~v  393 (675)
T KOG0212|consen  317 GLLLKLVSSERLKEEI-DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDR-SDEV  393 (675)
T ss_pred             HHHHHHHhhhhhcccc-chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCc-hhHH
Confidence            3344454443333332 22 3577888888889999999999989888777777444433 46777888777765 3478


Q ss_pred             HHHHHHHHHhhchhH
Q 009471          501 KKYAVACLASLSPSA  515 (534)
Q Consensus       501 k~~a~~~L~~L~~~~  515 (534)
                      ...+...+.+++.+.
T Consensus       394 vl~~L~lla~i~~s~  408 (675)
T KOG0212|consen  394 VLLALSLLASICSSS  408 (675)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            899999999999883

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0042  Score=66.12  Aligned_cols=280  Identities=13%  Similarity=0.123  Sum_probs=189.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS  235 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (534)
                      -.+|.+.|.+.....+.+|+..+..+...+.+. .     ...|..|+...+.+.+++...---|...|+..++-..+  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-S-----~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-S-----LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH-H-----HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence            356788889999999999999998887544432 1     34678888888999999999888888888877643222  


Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHH
Q 009471          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQM  314 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~  314 (534)
                        -|..+-+-|+++++.+|..|.++|..+-...-. ..     .+-++-+...+..+.+|..|+.++-.|-. +++.+.+
T Consensus       109 --SIntfQk~L~DpN~LiRasALRvlSsIRvp~Ia-PI-----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  109 --SINTFQKALKDPNQLIRASALRVLSSIRVPMIA-PI-----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             --eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHH-HH-----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence              377888899999999999888888876442111 11     11333455667889999999999988866 4454444


Q ss_pred             HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcC--
Q 009471          315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS--  390 (534)
Q Consensus       315 i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~--  390 (534)
                      +     +..+-.+|.+.++ -|.-.|+.+.-.+|-..    -.+++ +-...+.+++.+  ...|...+..|..-|+.  
T Consensus       181 L-----~e~I~~LLaD~sp-lVvgsAv~AF~evCPer----ldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l  249 (968)
T KOG1060|consen  181 L-----EEVIKKLLADRSP-LVVGSAVMAFEEVCPER----LDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQL  249 (968)
T ss_pred             H-----HHHHHHHhcCCCC-cchhHHHHHHHHhchhH----HHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcC
Confidence            3     4455566677776 78899999999888521    12222 235667777755  55677777777776661  


Q ss_pred             --c-cHHHHHh---------------------cCcHHHH----HHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCc
Q 009471          391 --V-SQEVLIS---------------------LGFFPRL----VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGC  442 (534)
Q Consensus       391 --~-~~~~l~~---------------------~~~i~~L----v~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~  442 (534)
                        + ......+                     ..-+..|    -.+|.+.++.|...++.+.+.++-..+.      .++
T Consensus       250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i  323 (968)
T KOG1060|consen  250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKI  323 (968)
T ss_pred             CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHH
Confidence              1 1000111                     1112223    3356788899999999999999854322      234


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          443 TPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       443 v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      ++.|+++|.+ +.++|...+..+..++
T Consensus       324 ~kaLvrLLrs-~~~vqyvvL~nIa~~s  349 (968)
T KOG1060|consen  324 AKALVRLLRS-NREVQYVVLQNIATIS  349 (968)
T ss_pred             HHHHHHHHhc-CCcchhhhHHHHHHHH
Confidence            7888888874 4567777766666665

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.09  E-value=2.8e-05  Score=64.73  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471          238 VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA  316 (534)
Q Consensus       238 ~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (534)
                      .+..|+.-... .+.+.+++...-|.|.+-++.|-..+.+.+++..++.-+..++......+.+.|+|+|.++.+.+.|.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~   96 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR   96 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence            35555554443 58889999999999999988888889999999999999999999999999999999999999999999


Q ss_pred             hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh
Q 009471          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY  370 (534)
Q Consensus       317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~  370 (534)
                      +.++++.++..+.++.. .+...++..+..|+.+.-..|..+....++..+.++
T Consensus        97 ea~g~plii~~lssp~e-~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   97 EALGLPLIIFVLSSPPE-ITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             HhcCCceEEeecCCChH-HHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            99999999999988876 789999999999998777777777665555555444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.08  E-value=0.0011  Score=67.16  Aligned_cols=307  Identities=18%  Similarity=0.163  Sum_probs=192.8

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      .....+...+-+++.+++..+.+.++.+.. +++....+.+.+.--.++.-|..+  +..-|++|++.+..+.......+
T Consensus        25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~  103 (371)
T PF14664_consen   25 FFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK  103 (371)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence            345555555556667888777777777775 555667777766655566666654  36789999999999987654322


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchH
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (534)
                      . +..|++..++.+.++.++..+..+..+|..++..++  +.+...||++.|++.+.++........+.++..+-..|..
T Consensus       104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t  180 (371)
T PF14664_consen  104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT  180 (371)
T ss_pred             c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence            2 256789999999999999999999999999987432  4566799999999999887777888999999999999988


Q ss_pred             HHHHHhhCcHHHHHHHhhcC------CCh--hHHHHHHHHHHHHccCChHHHHHHHh-cCChHHHHHhhcCC--chHHHH
Q 009471          312 RQMLAEEGIVSVMIKLLDCG------ILL--GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDGP--LPQESA  380 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~------~~~--~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L~~~--~~~~~a  380 (534)
                      |+.+...--+..++.-+.+.      +..  +.-..+..++..+-...+..--.-.+ ..++..|+..|.-|  +++...
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I  260 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI  260 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence            88776533344444443222      111  12334445555544433332211111 25688888888764  488888


Q ss_pred             HHHHHHhhc---CccHH------HHHhcCcHHHHHHHHhcCCHHHHHHHHHHH-------HHhcCC--hhHHHHHHhcCc
Q 009471          381 VGALRNLVG---SVSQE------VLISLGFFPRLVHVLKAGSLGAQQAAASAL-------CRVCTS--AEMKKLVGEAGC  442 (534)
Q Consensus       381 ~~aL~~La~---~~~~~------~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL-------~~la~~--~~~~~~i~~~g~  442 (534)
                      +..+..+-.   +.-.+      .....+.+..--++- ++.    ......+       .++..+  .=.-..+.++|.
T Consensus       261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~-~~~----~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL  335 (371)
T PF14664_consen  261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLS-SGF----AEAKSILPHRSSKRPNLVNHYLALLLAILIEAGL  335 (371)
T ss_pred             HHHHHHHHCCCCCCcccchhhcccccccccccchhhhc-ccc----cccccccCccccccccHHHHHHHHHHHHHHHcCh
Confidence            888888776   11111      111122210000111 000    0000000       000000  112235578999


Q ss_pred             hHHHHHhhcCC-ChHHHHHHHHHHHHhc
Q 009471          443 TPLLIKLLEAK-PNSVREVAAQAISSLV  469 (534)
Q Consensus       443 v~~Lv~ll~~~-~~~v~~~A~~aL~~L~  469 (534)
                      ++.|+++..+. +..+...|...|..+.
T Consensus       336 ~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  336 LEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            99999999865 8888899988888764

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00066  Score=71.29  Aligned_cols=300  Identities=14%  Similarity=0.169  Sum_probs=173.8

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      .+..-++++..|.+.-+..|.+|+-.+..+.-.=|+.   +.  ...|.|++-|.++|+.|+-.|+.+++.|+..++ +-
T Consensus       142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            4556788999999999999999999998887544433   32  357899999999999999999999999998654 21


Q ss_pred             H--------HHHhc-------------------------CCHHHHHHHHccCC-HHHHHHHHHHHHH--hhcC-hhhHHH
Q 009471          231 N--------WLVSE-------------------------GVLPPLIRLVESGS-TVGKEKATISLQR--LSMS-AEMARA  273 (534)
Q Consensus       231 ~--------~l~~~-------------------------g~i~~Lv~lL~~~~-~~~~~~A~~~L~~--Ls~~-~~~~~~  273 (534)
                      -        .++..                         ..+++|..++++.. +.+...+..++-.  ++.. +++-..
T Consensus       217 L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as  296 (877)
T KOG1059|consen  217 LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS  296 (877)
T ss_pred             ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH
Confidence            1        11111                         23444444444431 1122222222211  1111 111100


Q ss_pred             HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~  352 (534)
                      +  .-++..|-.++.+.|+..+..++-+++.+...+ ..-...     -+.++..|.+.+. .++..|+..|.-+..  .
T Consensus       297 i--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~-SIRlrALdLl~gmVs--k  366 (877)
T KOG1059|consen  297 I--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDE-SIRLRALDLLYGMVS--K  366 (877)
T ss_pred             H--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCc-hhHHHHHHHHHHHhh--h
Confidence            0  012456666777889999999999999888733 222211     3456777877777 899999999999985  3


Q ss_pred             HHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHHHhcCc-HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          353 NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVLISLGF-FPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l~~~~~-i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      .+-..|     +..|+..+..   ...+...+.-+..+|+..+-+.+.+-.+ +..|+++.+-.....=...+.-+..++
T Consensus       367 kNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~  441 (877)
T KOG1059|consen  367 KNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA  441 (877)
T ss_pred             hhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence            333333     3455555432   3467777777777777545555544333 555666654322211122222333444


Q ss_pred             -CChhHHHHHHhcCchHHHHHhhc-----------CCChHHHHHHHHHHHHhcCCCcchH
Q 009471          429 -TSAEMKKLVGEAGCTPLLIKLLE-----------AKPNSVREVAAQAISSLVTLPQNCR  476 (534)
Q Consensus       429 -~~~~~~~~i~~~g~v~~Lv~ll~-----------~~~~~v~~~A~~aL~~L~~~~~~~~  476 (534)
                       +-+..|...     |..+..++.           +.-.++-.+|+|++.-.+...+|..
T Consensus       442 iRV~~iR~fs-----V~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~  496 (877)
T KOG1059|consen  442 IRVPSIRPFS-----VSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPN  496 (877)
T ss_pred             eechhhhHhH-----HHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHH
Confidence             223333332     222222222           1235677788888887765555433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.0013  Score=67.50  Aligned_cols=295  Identities=15%  Similarity=0.184  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC
Q 009471          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS  250 (534)
Q Consensus       171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~  250 (534)
                      ...-.+...+++..+++.+..     ..|.|-..|++.-.-+...+++.++.++...-.-+.+  ...+..|-.+|++..
T Consensus       244 ~V~lvr~~~~ll~~n~q~~~q-----~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~--~~~vs~L~~fL~s~r  316 (898)
T COG5240         244 GVLLVRATVELLKENSQALLQ-----LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV--DQTVSSLRTFLKSTR  316 (898)
T ss_pred             heehHHHHHHHHHhChHHHHH-----HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcch
Confidence            333444555566555544332     2556666777666788899999999988765211111  124777777888888


Q ss_pred             HHHHHHHHHHHHHhhcChhhHHHH--------H-hC-C--ChHHHHHHHccCChHHHH-------------------HHH
Q 009471          251 TVGKEKATISLQRLSMSAEMARAI--------V-GH-G--GVRPLIEICQTGDSVSQA-------------------AAA  299 (534)
Q Consensus       251 ~~~~~~A~~~L~~Ls~~~~~~~~l--------~-~~-g--~i~~Lv~ll~~~~~~~~~-------------------~a~  299 (534)
                      ...+-.|.++|..|+...+.+-..        + +. .  ..-++..+|+.++.+...                   .+.
T Consensus       317 v~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i  396 (898)
T COG5240         317 VVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI  396 (898)
T ss_pred             HHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH
Confidence            889999999999998764432211        1 10 0  112233444444433221                   122


Q ss_pred             HHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHH
Q 009471          300 CTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQE  378 (534)
Q Consensus       300 ~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~  378 (534)
                      .+++.|+. .|.-+.     ..+..|...|.+.-..+-+..++.+|..+....+..++.+     ++.|..++++.+.-+
T Consensus       397 da~rsLsl~Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~~  466 (898)
T COG5240         397 DALRSLSLLFPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYHQ  466 (898)
T ss_pred             HHHHHHHhhCcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchhH
Confidence            22222222 111111     1233333333222222456666666666655554444333     455566666555555


Q ss_pred             HHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh---hHHHHHHhcCchHHHHHhhcCC
Q 009471          379 SAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA---EMKKLVGEAGCTPLLIKLLEAK  453 (534)
Q Consensus       379 ~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~---~~~~~i~~~g~v~~Lv~ll~~~  453 (534)
                      .+++.|+-|..  +...   ....++..+.+-+--.+.-++..|..+|.+++.+.   -..+.     ....|-+.+++.
T Consensus       467 I~vrIL~iLG~EgP~a~---~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~~~lkRclnD~  538 (898)
T COG5240         467 ITVRILGILGREGPRAK---TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS-----VENALKRCLNDQ  538 (898)
T ss_pred             HHHHHHHHhcccCCCCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HHHHHHHHhhcc
Confidence            55555555554  1111   01223555555444566789999999999998652   12222     245677788899


Q ss_pred             ChHHHHHHHHHHHHhcCCCcchHHHHhh--CCCHHHHHhh
Q 009471          454 PNSVREVAAQAISSLVTLPQNCREVKRD--DKSVPNLVQL  491 (534)
Q Consensus       454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~--~~~v~~Lv~l  491 (534)
                      +.++|..|..+|.++ .....+..++..  -+.++.|..-
T Consensus       539 DdeVRdrAsf~l~~~-~~~da~~pl~~sd~~~dipsle~~  577 (898)
T COG5240         539 DDEVRDRASFLLRNM-RLSDACEPLFSSDELGDIPSLELE  577 (898)
T ss_pred             cHHHHHHHHHHHHhh-hhhhhhhccccccccCCcchhHHh
Confidence            999999999999998 444444443332  2344554433

>PF05536 Neurochondrin: Neurochondrin

Probab=97.99  E-value=0.00058  Score=72.85  Aligned_cols=229  Identities=16%  Similarity=0.106  Sum_probs=156.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hhHHHHhcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhh
Q 009471          197 NIAALVQLLTATSPRIREKTVTVICSLAESGS----CENWLVSEGVLPPLIRLVESG-------STVGKEKATISLQRLS  265 (534)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~~~l~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~~Ls  265 (534)
                      .++..+++|+..+++-|-.++..+.++....+    .++.+.+.=+.+.+-++|+++       ....+.-|..+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            46777888998887777788888888887655    345677887889999999883       3456778889999999


Q ss_pred             cChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471          266 MSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECL  344 (534)
Q Consensus       266 ~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L  344 (534)
                      ..++.+..----+-||.|++++...+. .+...++.+|..++..++.++.+.+.|+++.|++.+.++.  ...+.++.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~--~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS--FQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc--chHHHHHHHH
Confidence            877665322123557999999988777 8999999999999999999999999999999999998854  5799999999


Q ss_pred             HHHccCChHHHHHHHhcCC----hHHHHHhhcC--CchHHHHHHHHHHhhcCcc---HHHHHhcCc----HHHHHHHHhc
Q 009471          345 QNLTASNENLRRSVVSEGG----IRSLLAYLDG--PLPQESAVGALRNLVGSVS---QEVLISLGF----FPRLVHVLKA  411 (534)
Q Consensus       345 ~~La~~~~~~~~~i~~~g~----l~~L~~~L~~--~~~~~~a~~aL~~La~~~~---~~~l~~~~~----i~~Lv~lL~~  411 (534)
                      .+++......... -+...    ++.+-..+..  ...+...+..|..+-....   ........+    ...+..++++
T Consensus       164 ~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            9988743311000 11112    2233333322  3456677888888776221   111222333    3445556666


Q ss_pred             CC-HHHHHHHHHHHHHhc
Q 009471          412 GS-LGAQQAAASALCRVC  428 (534)
Q Consensus       412 ~~-~~v~~~A~~aL~~la  428 (534)
                      +- +.-+..+......|.
T Consensus       243 r~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLL  260 (543)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            54 444555554444443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00025  Score=75.25  Aligned_cols=145  Identities=14%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      +-..+++++..+++.|.+.|.-.--.+.+.+...|..     ..+.+..+++=..++++.+|..|++.++.+.... ..+
T Consensus        47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-i~e  120 (734)
T KOG1061|consen   47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-ITE  120 (734)
T ss_pred             hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-HHH
Confidence            4456888999999999998888888888888776643     2256888888788889999999999888775443 222


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                           -.+.++.+.+++.++.++..++.+..++-.  .+.......|.++.|-.++.+.+|.+...|..+|..+...+
T Consensus       121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             -----HHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence                 248899999999999999999988888743  34555667888999999999999999999999999887643

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00071  Score=71.07  Aligned_cols=220  Identities=15%  Similarity=0.153  Sum_probs=156.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHH
Q 009471          239 LPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLA  316 (534)
Q Consensus       239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~  316 (534)
                      -+-++.+|.+..+.++..|..+++.+... ++..+.     .+|.|++=|.++||.++.+|+.+++.|+. +|.+.-.  
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--  218 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--  218 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--
Confidence            56677899999999999999999998765 333222     23999999999999999999999999998 5554333  


Q ss_pred             hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC---chHHHHHHHHH--Hhhc-C
Q 009471          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP---LPQESAVGALR--NLVG-S  390 (534)
Q Consensus       317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~---~~~~~a~~aL~--~La~-~  390 (534)
                         .-|.+++++...+..=+....+...++|+--.+....     ..+++|.+++.+.   .+...|+.++.  ++.. .
T Consensus       219 ---LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~  290 (877)
T KOG1059|consen  219 ---LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM  290 (877)
T ss_pred             ---ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence               3578888886444324677778888888876666554     3478899988763   23333333332  2222 1


Q ss_pred             ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      ......+. -.+..|-.++.+.|+.++..++-+++.+.. ++....+.     -..+++.+.++++.+|-.|+..|..+.
T Consensus       291 ~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  291 SDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMV  364 (877)
T ss_pred             CCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            11111111 146778888899999999999999999984 35443332     456788999999999999999999984


Q ss_pred             CCCcchHHHHh
Q 009471          470 TLPQNCREVKR  480 (534)
Q Consensus       470 ~~~~~~~~~~~  480 (534)
                       ...|..++++
T Consensus       365 -skkNl~eIVk  374 (877)
T KOG1059|consen  365 -SKKNLMEIVK  374 (877)
T ss_pred             -hhhhHHHHHH
Confidence             5566666554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.0025  Score=65.47  Aligned_cols=304  Identities=14%  Similarity=0.130  Sum_probs=189.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCCh
Q 009471          203 QLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGV  280 (534)
Q Consensus       203 ~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i  280 (534)
                      +-+++++..-|+.|+.+++.+-..+.  ++..++ ...+|.+...+.++.-.++..++|++..++.+-  ...+...|-+
T Consensus       373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl  449 (858)
T COG5215         373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHL  449 (858)
T ss_pred             HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccc
Confidence            34667788999999999999977653  444443 356888888888888889999999999987542  2223334444


Q ss_pred             HHHHHHHc---cCChHHHHHHHHHHHHccCCc-hH----HHHHHh--hCcHHHHHHHhh-cCCChhHHHHHHHHHHHHcc
Q 009471          281 RPLIEICQ---TGDSVSQAAAACTLKNISAVP-EV----RQMLAE--EGIVSVMIKLLD-CGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       281 ~~Lv~ll~---~~~~~~~~~a~~aL~nLa~~~-~~----~~~i~e--~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~  349 (534)
                      +..+.-+-   ...|.....++|...|+...- +.    -..+..  ..++..|++-.+ .+++...|..+..+|+.+..
T Consensus       450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~  529 (858)
T COG5215         450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL  529 (858)
T ss_pred             cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            44443322   235777788899988887631 11    111111  223344443332 12222566666666666654


Q ss_pred             CC-hHHHHHHHh---------cCChHHHHHhhc--C----CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc
Q 009471          350 SN-ENLRRSVVS---------EGGIRSLLAYLD--G----PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA  411 (534)
Q Consensus       350 ~~-~~~~~~i~~---------~g~l~~L~~~L~--~----~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~  411 (534)
                      .. +.....+..         ...+..+-+.+.  +    .+++.+-+++|..+.+  +...+. ++...+..++++|++
T Consensus       530 ~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les  608 (858)
T COG5215         530 ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILES  608 (858)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhc
Confidence            22 222221111         112222222221  1    3466777777777776  211111 233467788888887


Q ss_pred             CC-HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHH
Q 009471          412 GS-LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPN  487 (534)
Q Consensus       412 ~~-~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~  487 (534)
                      .+ ..+-.....++.+|+.+  +.+-++.  ..++|.|.+-++..+..+...|...+..|+.. ......+..  ..+..
T Consensus       609 ~~~t~~~~dV~~aIsal~~sl~e~Fe~y~--~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d--~~ms~  684 (858)
T COG5215         609 TKPTTAFGDVYTAISALSTSLEERFEQYA--SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYAD--VLMSS  684 (858)
T ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHH
Confidence            75 45667788889999876  3344444  67899999999888888889999999999743 334344333  56789


Q ss_pred             HHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471          488 LVQLLDPS-PQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       488 Lv~lL~~~-~~~~~k~~a~~~L~~L~~~  514 (534)
                      |+|+|+++ ...++|...++++..++..
T Consensus       685 LvQ~lss~~~~R~lKPaiLSvFgDIAla  712 (858)
T COG5215         685 LVQCLSSEATHRDLKPAILSVFGDIALA  712 (858)
T ss_pred             HHHHhcChhhccccchHHHHHHHHHHHH
Confidence            99999987 2345788888888887765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.96  E-value=0.003  Score=63.78  Aligned_cols=245  Identities=26%  Similarity=0.276  Sum_probs=168.6

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .+..++..+.+.+...+..|...+..+-           ....++.+..++.+.++.+|..|+.+|+.+....       
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~-------  105 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPE-------  105 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-------
Confidence            4677888888888888988887755432           2246899999999999999999999887775333       


Q ss_pred             hcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCCh------------HHHHHHHHH
Q 009471          235 SEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS------------VSQAAAACT  301 (534)
Q Consensus       235 ~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~------------~~~~~a~~a  301 (534)
                         .++.++.++. +++..++..++++|..+...          .++..++..+.+...            .++..+...
T Consensus       106 ---a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~  172 (335)
T COG1413         106 ---AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA  172 (335)
T ss_pred             ---HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence               4899999999 58999999999999997542          225677777776542            244444444


Q ss_pred             HHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHH
Q 009471          302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (534)
Q Consensus       302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~  379 (534)
                      |..+          .+...++.+.+.+.+... .++..+..+|..+...+         ....+.+...+.+  ..++..
T Consensus       173 l~~~----------~~~~~~~~l~~~l~~~~~-~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~  232 (335)
T COG1413         173 LGEL----------GDPEAIPLLIELLEDEDA-DVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKA  232 (335)
T ss_pred             HHHc----------CChhhhHHHHHHHhCchH-HHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHH
Confidence            4433          235567888888888876 78999999999988754         2234556666665  346667


Q ss_pred             HHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHH
Q 009471          380 AVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE  459 (534)
Q Consensus       380 a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~  459 (534)
                      ++.+++.+-.         ...+..+...+...+..+...+...+...-.          ......+...+.+....++.
T Consensus       233 ~~~~l~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~  293 (335)
T COG1413         233 ALLALGEIGD---------EEAVDALAKALEDEDVILALLAAAALGALDL----------AEAALPLLLLLIDEANAVRL  293 (335)
T ss_pred             HHHHhcccCc---------chhHHHHHHHHhccchHHHHHHHHHhcccCc----------hhhHHHHHHHhhcchhhHHH
Confidence            7776666543         2246777777877777666666655541110          12344555566666677777


Q ss_pred             HHHHHHHHhc
Q 009471          460 VAAQAISSLV  469 (534)
Q Consensus       460 ~A~~aL~~L~  469 (534)
                      .+..++....
T Consensus       294 ~~~~~l~~~~  303 (335)
T COG1413         294 EAALALGQIG  303 (335)
T ss_pred             HHHHHHHhhc
Confidence            7777776664

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.0026  Score=69.36  Aligned_cols=134  Identities=17%  Similarity=0.211  Sum_probs=106.0

Q ss_pred             HHHHHHHHHccC-CchHHHHHHh----hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh
Q 009471          296 AAAACTLKNISA-VPEVRQMLAE----EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY  370 (534)
Q Consensus       296 ~~a~~aL~nLa~-~~~~~~~i~e----~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~  370 (534)
                      ..++.+|.|+.. +|+....+..    -|.++.++.++.......++..|+..+..++. +..+-..+...+++..|+++
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHH
Confidence            467888888765 5554443332    56788888888755544799999999988887 56666778888899999999


Q ss_pred             hcC-CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC
Q 009471          371 LDG-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       371 L~~-~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~  430 (534)
                      |.+ |..|+.++.+|..|++ +.......+.|++..+..++ .+.++..+..|+..+.+|...
T Consensus      1822 LHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1822 LHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            988 9999999999999998 56666777888888888766 566789999999999999754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.93  E-value=0.00077  Score=70.94  Aligned_cols=258  Identities=16%  Similarity=0.127  Sum_probs=166.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch---hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARA  273 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~  273 (534)
                      +...+..|++..+.+|++|+..++.++.--..   .+.+...|+  .|...|....+++......++..+...-.. +..
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            55566678888999999999999999754332   223333443  366778888888887777777766432211 110


Q ss_pred             HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h---HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~---~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      ---.+.+|.|..+|++....++..+...+..++... +   .|+-|   .+---|+++|..... +++.++...++.|+.
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK-~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKK-EIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence            001455799999999999999999999999998743 3   22222   233446777776665 899999999999885


Q ss_pred             CChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471          350 SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (534)
Q Consensus       350 ~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~  429 (534)
                      .       +--..++..   +|++-.+++.-.++-..++-.-..+.-.-..++|.|++=-+.++..||.-.+++++.|-.
T Consensus       955 a-------IGPqdVLat---LlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fe 1024 (1172)
T KOG0213|consen  955 A-------IGPQDVLAT---LLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFE 1024 (1172)
T ss_pred             h-------cCHHHHHHH---HHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHH
Confidence            1       211122333   344433332221111111110000000012357777777778888999999999999875


Q ss_pred             C--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc
Q 009471          430 S--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ  473 (534)
Q Consensus       430 ~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~  473 (534)
                      .  +-.++++  .-..|.|.+-+.+.+..-|.-|+.++.+|+....
T Consensus      1025 yigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1025 YIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             HHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence            4  4445555  3457888888888888889999999999997644

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.0065  Score=60.71  Aligned_cols=254  Identities=19%  Similarity=0.165  Sum_probs=178.9

Q ss_pred             HHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh------hhH----HHHHhCCChHHHH
Q 009471          215 KTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMA----RAIVGHGGVRPLI  284 (534)
Q Consensus       215 ~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~~~----~~l~~~g~i~~Lv  284 (534)
                      ..+.-+-.++..++--..+++.++++.|+.+|...+.++.......|..|+..+      +.+    .++++.+.++.|+
T Consensus       103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            344556677888887778999999999999999999999999999999998532      333    3456677788887


Q ss_pred             HHHccCCh------HHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccCChHHHH
Q 009471          285 EICQTGDS------VSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRR  356 (534)
Q Consensus       285 ~ll~~~~~------~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~~~~~~~  356 (534)
                      .-+..-|.      .........+-|+.. .++.+..+++.|.+..|+.-+. .......+..|.++|.-+-..+..++.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            76653222      334567778888887 4588999999999999888553 323325688899999999887777887


Q ss_pred             HHHhcCChHHHHHhhc-----CC---chHHH---HHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHH
Q 009471          357 SVVSEGGIRSLLAYLD-----GP---LPQES---AVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL  424 (534)
Q Consensus       357 ~i~~~g~l~~L~~~L~-----~~---~~~~~---a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL  424 (534)
                      ..-.-.|+..+++-+.     +|   +-++.   ...+|+.+.. +.++..+....++....-+++. ....+..+.++|
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL  341 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL  341 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence            7788899999988762     33   23444   4444444444 6788888877777655555555 445677788888


Q ss_pred             HHhcCC---hhHHHHHHhcCchHHHHHhhc-CC---------ChHHHHHHHHHHHHhc
Q 009471          425 CRVCTS---AEMKKLVGEAGCTPLLIKLLE-AK---------PNSVREVAAQAISSLV  469 (534)
Q Consensus       425 ~~la~~---~~~~~~i~~~g~v~~Lv~ll~-~~---------~~~v~~~A~~aL~~L~  469 (534)
                      -....+   ..++..+++.+|...+..+.- .+         ..+.-+..+..|+++.
T Consensus       342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~  399 (536)
T KOG2734|consen  342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL  399 (536)
T ss_pred             HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence            887655   357777778777776666543 11         1334456666666665

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.89  E-value=2e-05  Score=52.63  Aligned_cols=41  Identities=39%  Similarity=0.570  Sum_probs=38.2

Q ss_pred             ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       267 ~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                      +++++..+.+.|+++.|+.++.++++.++..|+++|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.01  Score=62.46  Aligned_cols=338  Identities=14%  Similarity=0.098  Sum_probs=192.7

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCch
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSC  229 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~  229 (534)
                      +...+..+..-|.+.|+...--|+..+.++-..  +.+..+.  ..|+   ++|-+++  +-++..|+-+|..|-...+ 
T Consensus       109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp-  180 (938)
T KOG1077|consen  109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP-  180 (938)
T ss_pred             HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc-
Confidence            344445555556666666666666666665321  1222221  2233   5666654  6788888888888866543 


Q ss_pred             hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc-------------CChHHHH
Q 009471          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-------------GDSVSQA  296 (534)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~-------------~~~~~~~  296 (534)
                       +.+-..+-...++.+|++.+..+...+...+..|+...+.....+-.-.+..|..++..             +.|=.+.
T Consensus       181 -Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v  259 (938)
T KOG1077|consen  181 -DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV  259 (938)
T ss_pred             -cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence             12222345788999999988888878888888887653322211112223444444332             2455677


Q ss_pred             HHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCC-hhH-----HHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471          297 AAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGIL-LGS-----KEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (534)
Q Consensus       297 ~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~-~~v-----~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (534)
                      ..++.|.+.-..+  ..+..+.+  ++..++...++... ..+     +...+.-.-+++.+-+.-.+.+.  ..+..|-
T Consensus       260 Kl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg  335 (938)
T KOG1077|consen  260 KLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG  335 (938)
T ss_pred             HHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence            7888887774422  34444432  34444444432211 112     22223333334433222222222  2366777


Q ss_pred             HhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchH
Q 009471          369 AYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTP  444 (534)
Q Consensus       369 ~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~  444 (534)
                      +++.+  +.+|--++..+..|+. ....+.+-.+  .+.++..|+ ..|..+++.|+..|..||..+ +.+.+     +.
T Consensus       336 ~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~I-----V~  407 (938)
T KOG1077|consen  336 QFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQI-----VA  407 (938)
T ss_pred             HHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHH-----HH
Confidence            88876  6789999999999998 3344444333  788899998 778999999999999998643 34444     56


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhcC-CCcch----HHH---------HhhCCCHHHHHhhcCCCCchhHHHHHHHHHHh
Q 009471          445 LLIKLLEAKPNSVREVAAQAISSLVT-LPQNC----REV---------KRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS  510 (534)
Q Consensus       445 ~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~----~~~---------~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~  510 (534)
                      .|.+.+...+..+|+...-=..-|+. ...+-    ..+         ..+++.+-.++|..-.+  ++++.||+..+..
T Consensus       408 elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNn--edlq~yaak~~fe  485 (938)
T KOG1077|consen  408 ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNN--EDLQGYAAKRLFE  485 (938)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecc--hhhhHHHHHHHHH
Confidence            67778877777777665444444431 11111    100         11334555666666654  3678888766655


Q ss_pred             hc
Q 009471          511 LS  512 (534)
Q Consensus       511 L~  512 (534)
                      .-
T Consensus       486 ~L  487 (938)
T KOG1077|consen  486 YL  487 (938)
T ss_pred             HH
Confidence            43

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.88  E-value=3e-05  Score=51.74  Aligned_cols=41  Identities=29%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             ChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471          185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE  225 (534)
Q Consensus       185 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (534)
                      +++++..+++.|+++.|+++|+++++++++.|+++|++|+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=0.0012  Score=68.66  Aligned_cols=281  Identities=15%  Similarity=0.087  Sum_probs=170.5

Q ss_pred             hhhhhhchHHHHHHHHhcCCHHHHHH-HHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC---CCHHHHHHHHHHHHHh
Q 009471          148 AEATTHGNTRELLARLQIGHLEAKHK-ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA---TSPRIREKTVTVICSL  223 (534)
Q Consensus       148 ~~~~~~~~i~~Ll~~L~~~~~~~~~~-A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~---~~~~v~~~A~~~L~~L  223 (534)
                      ........+..+...++......+.+ ++.+.......-.    ...+...++.+-.++.+   ....+|+.|..+...+
T Consensus       168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai  243 (569)
T KOG1242|consen  168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAI  243 (569)
T ss_pred             hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHH
Confidence            34444555666666665544444333 2222222221110    12344555555555543   4588998888777766


Q ss_pred             hcCC--chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          224 AESG--SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       224 a~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                      -..-  ...+.     .+++++.-+.+.....+..++..+..|....+..-...-...+|.+.+.+-+..++++..+..+
T Consensus       244 ~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~  318 (569)
T KOG1242|consen  244 MRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIET  318 (569)
T ss_pred             HHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHH
Confidence            4422  12222     2566665555557778889999999998877777777778999999999999999999999999


Q ss_pred             HHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh----c--CCc
Q 009471          302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----D--GPL  375 (534)
Q Consensus       302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L----~--~~~  375 (534)
                      |.+++...++.. |  ...+|.+++.+.++..  -...++..|..-+.-      ..++.-.+..++.++    .  +..
T Consensus       319 l~~~~svidN~d-I--~~~ip~Lld~l~dp~~--~~~e~~~~L~~ttFV------~~V~~psLalmvpiL~R~l~eRst~  387 (569)
T KOG1242|consen  319 LLKFGSVIDNPD-I--QKIIPTLLDALADPSC--YTPECLDSLGATTFV------AEVDAPSLALMVPILKRGLAERSTS  387 (569)
T ss_pred             HHHHHHhhccHH-H--HHHHHHHHHHhcCccc--chHHHHHhhcceeee------eeecchhHHHHHHHHHHHHhhccch
Confidence            999987554444 1  2357778888776663  233344444433321      011122233333333    2  256


Q ss_pred             hHHHHHHHHHHhhc-CccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc
Q 009471          376 PQESAVGALRNLVG-SVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE  451 (534)
Q Consensus       376 ~~~~a~~aL~~La~-~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~  451 (534)
                      .+..++.+++|+|. -+.+..+..  ...+|.|-..+....|++|..++++|+.+-........   .+.+|.+...+.
T Consensus       388 ~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~  463 (569)
T KOG1242|consen  388 IKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLT  463 (569)
T ss_pred             hhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhc
Confidence            78899999999998 334433322  23455566666666899999999999887643221111   455666666664

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0027  Score=66.28  Aligned_cols=281  Identities=16%  Similarity=0.153  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHhhcCCc----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH
Q 009471          212 IREKTVTVICSLAESGS----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC  287 (534)
Q Consensus       212 v~~~A~~~L~~La~~~~----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll  287 (534)
                      .+..+......++..+.    .++.     +...+..+..+.+..++..|+..|..|+....--...     ....++++
T Consensus       174 ~~~~~~~~~~~lg~~~ss~~~d~~~-----~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~l  243 (823)
T KOG2259|consen  174 NRLLLYCFHLPLGVSPSSLTHDREH-----AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHL  243 (823)
T ss_pred             chHHHHHHhhhcccCCCcccccHHH-----HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH-----HHHHHHHh
Confidence            34444445555554442    2222     2344888888889999999999998887743333333     26678899


Q ss_pred             ccCChHHHHHHHHHHHHccC---Cc----hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471          288 QTGDSVSQAAAACTLKNISA---VP----EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS  360 (534)
Q Consensus       288 ~~~~~~~~~~a~~aL~nLa~---~~----~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (534)
                      ++.+..+|..|...++-.+.   .+    .....+. ..++..+...+.+... .++..|..+|+.+...+++.-..-.+
T Consensus       244 sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl-~VRV~AaK~lG~~~~vSee~i~QTLd  321 (823)
T KOG2259|consen  244 SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSL-SVRVEAAKALGEFEQVSEEIIQQTLD  321 (823)
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCce-eeeehHHHHhchHHHhHHHHHHHHHH
Confidence            99999999988777665543   12    1222222 3457778888888886 78888888888887755443222111


Q ss_pred             ----------------------cC----------------------------ChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471          361 ----------------------EG----------------------------GIRSLLAYLDG--PLPQESAVGALRNLV  388 (534)
Q Consensus       361 ----------------------~g----------------------------~l~~L~~~L~~--~~~~~~a~~aL~~La  388 (534)
                                            .|                            .--.++.-+++  .++|..|+..++.|+
T Consensus       322 KKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La  401 (823)
T KOG2259|consen  322 KKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLA  401 (823)
T ss_pred             HHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHH
Confidence                                  11                            12233444444  467889999999998


Q ss_pred             c--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471          389 G--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (534)
Q Consensus       389 ~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~  466 (534)
                      .  +...     ...++.|+.++++....|+..|..+|..++.+-..+     +..++.+.+.+.+.++++|+...+.|.
T Consensus       402 ~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  402 TSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR-----EEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             cCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            7  3222     224778888888888899999999999988652222     334777888888889999988888777


Q ss_pred             HhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHH
Q 009471          467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLER  521 (534)
Q Consensus       467 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~  521 (534)
                      +. ..+ ..+-+ .  ..+..|+..|..-|  ..+.-...|+..+..+...++..
T Consensus       472 ~~-~~~-d~~~i-~--m~v~~lL~~L~kyP--qDrd~i~~cm~~iGqnH~~lv~s  519 (823)
T KOG2259|consen  472 NA-RVS-DLECI-D--MCVAHLLKNLGKYP--QDRDEILRCMGRIGQNHRRLVLS  519 (823)
T ss_pred             hc-CCC-cHHHH-H--HHHHHHHHHhhhCC--CCcHHHHHHHHHHhccChhhHHH
Confidence            65 222 11111 1  24566666666554  24556677777777774444433

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.81  E-value=0.00091  Score=63.86  Aligned_cols=226  Identities=15%  Similarity=0.136  Sum_probs=154.5

Q ss_pred             HHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-CCChHHHHHHHcc--CChHHHHHHHHHHHHccCCchHHHHHHh-hCc
Q 009471          245 LVESGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAE-EGI  320 (534)
Q Consensus       245 lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~  320 (534)
                      +++.-++-.+..|..++.++...++.+..+.. ...-..+++++++  ++...|.+.+-++|.++.+++..+.+-. ...
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl  236 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33333455788899999999998888776554 4566778888875  4677899999999999998877755443 456


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC-----Cch-------H--------HH
Q 009471          321 VSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG-----PLP-------Q--------ES  379 (534)
Q Consensus       321 i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~-----~~~-------~--------~~  379 (534)
                      +.-++++++......+-..++.++.|++... ........-.|-+.+-++.|..     .+.       +        +-
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            7778888876655577888999999999732 2222233334445555555522     111       1        00


Q ss_pred             HHH--HHHHh-----hc-C---------ccHHHHHh--cCcHHHHHHHHhcCCHH-HHHHHHHHHHHhcCC-hhHHHHHH
Q 009471          380 AVG--ALRNL-----VG-S---------VSQEVLIS--LGFFPRLVHVLKAGSLG-AQQAAASALCRVCTS-AEMKKLVG  438 (534)
Q Consensus       380 a~~--aL~~L-----a~-~---------~~~~~l~~--~~~i~~Lv~lL~~~~~~-v~~~A~~aL~~la~~-~~~~~~i~  438 (534)
                      +..  -+..|     +- +         .+...+.+  ..++..|.++++++++. .-..|+.-+..+.+. |+....+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence            000  00111     10 1         22334443  34588899999888765 455677777777754 99999999


Q ss_pred             hcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       439 ~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      ..|+-..+++++++++++++..|..++..+.+
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999987653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.0069  Score=60.51  Aligned_cols=255  Identities=15%  Similarity=0.130  Sum_probs=178.5

Q ss_pred             HHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC------c----hhHHHHhcCCHHHH
Q 009471          173 KALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG------S----CENWLVSEGVLPPL  242 (534)
Q Consensus       173 ~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~------~----~~~~l~~~g~i~~L  242 (534)
                      ..+..+.-++. -|+-...+++..+|+.|+.+|.+.+.++....+..|..|+..+      +    --+.+++.++++.|
T Consensus       103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            34445555554 4555567888999999999999999999999999999998753      1    34577788999999


Q ss_pred             HHHHccCCHHHHH------HHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHHHHccCCc-hHH
Q 009471          243 IRLVESGSTVGKE------KATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTG--DSVSQAAAACTLKNISAVP-EVR  312 (534)
Q Consensus       243 v~lL~~~~~~~~~------~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~--~~~~~~~a~~aL~nLa~~~-~~~  312 (534)
                      ++-++.-+..+++      .+...+.|+..- ++.+..++++|.+..|+.-+...  -..-+..|..+|.-+-.++ +++
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            9988765444444      455667777554 66677888898889888754432  3345677888887777655 577


Q ss_pred             HHHHhhCcHHHHHHHhh----cC----CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHH
Q 009471          313 QMLAEEGIVSVMIKLLD----CG----ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGA  383 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~----~~----~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~a  383 (534)
                      .....-.++..+++-+.    .+    +..+.-++-..||+.+.. .+.+|..+.+..|++...-+++. ...+..++++
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~Salkv  340 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLREKKVSRGSALKV  340 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHH
Confidence            77777788888877663    22    112445666777776665 56778888888888776666655 4567889999


Q ss_pred             HHHhhc-C---ccHHHHHhcCcHHHHHHHHh-cCC---------HHHHHHHHHHHHHhcC
Q 009471          384 LRNLVG-S---VSQEVLISLGFFPRLVHVLK-AGS---------LGAQQAAASALCRVCT  429 (534)
Q Consensus       384 L~~La~-~---~~~~~l~~~~~i~~Lv~lL~-~~~---------~~v~~~A~~aL~~la~  429 (534)
                      |..... +   +++..+++..++..++.+.- .+.         .+.-+..+..|+.+-.
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            999887 2   56678888777777776542 221         2455566666666543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.00079  Score=73.38  Aligned_cols=218  Identities=15%  Similarity=0.204  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh-hcChhhHHHHHhCCChHHHHHHHccC
Q 009471          213 REKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTG  290 (534)
Q Consensus       213 ~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L-s~~~~~~~~l~~~g~i~~Lv~ll~~~  290 (534)
                      |..|+..|+.+-.-.+ ....-..-|+.|.++++|++.-.+++-.-+-+-..+ +.++.+...+++.+|-..++..+..+
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            3444455555444443 455566779999999999999888776555555554 55555566799999988888888762


Q ss_pred             ---ChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471          291 ---DSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (534)
Q Consensus       291 ---~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (534)
                         +++-|..++-+|..+..+ +-.++...+.+.+...++.+.++...-.+..++-||+.|-.+++..|..=.+.+..+.
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence               457888999999999875 3667777888899988899988633257888999999999999999888888999999


Q ss_pred             HHHhhcC--CchHHHHHHHHHHhhcCc------cHHH-----------HHhcCcHH----HHHHHHhcCCHHHHHHHHHH
Q 009471          367 LLAYLDG--PLPQESAVGALRNLVGSV------SQEV-----------LISLGFFP----RLVHVLKAGSLGAQQAAASA  423 (534)
Q Consensus       367 L~~~L~~--~~~~~~a~~aL~~La~~~------~~~~-----------l~~~~~i~----~Lv~lL~~~~~~v~~~A~~a  423 (534)
                      |+..|.+  |++|..|+.+|+.+....      ....           ......+.    .++.+++.+++-++.+.+.+
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~  726 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA  726 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence            9999976  899999999999998721      1111           11112222    56777788999999999999


Q ss_pred             HHHhcCC
Q 009471          424 LCRVCTS  430 (534)
Q Consensus       424 L~~la~~  430 (534)
                      |.++...
T Consensus       727 ls~~~~g  733 (1387)
T KOG1517|consen  727 LSHFVVG  733 (1387)
T ss_pred             HHHHHHh
Confidence            9988743

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.77  E-value=0.016  Score=62.99  Aligned_cols=217  Identities=16%  Similarity=0.182  Sum_probs=116.1

Q ss_pred             HHHHccCChHHHHHHHHHHHHccCCc--h----HHHHHHhh------------------------CcHHHHHHHh----h
Q 009471          284 IEICQTGDSVSQAAAACTLKNISAVP--E----VRQMLAEE------------------------GIVSVMIKLL----D  329 (534)
Q Consensus       284 v~ll~~~~~~~~~~a~~aL~nLa~~~--~----~~~~i~e~------------------------g~i~~L~~ll----~  329 (534)
                      ++.+.+++.+++.+|..+|++++.+.  .    ....+...                        ..++.+-.+|    +
T Consensus       863 ieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE  942 (1233)
T KOG1824|consen  863 IEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCE  942 (1233)
T ss_pred             HHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcc
Confidence            44455667889999999999999854  1    11111110                        0111111111    1


Q ss_pred             cCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHH
Q 009471          330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLV  406 (534)
Q Consensus       330 ~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv  406 (534)
                      ...+ ..|.-.++||+.++..+++.        .+|.|-..+.+  +..+..++.++..... ...+-.......+..++
T Consensus       943 ~~ee-gtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl 1013 (1233)
T KOG1824|consen  943 CAEE-GTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFL 1013 (1233)
T ss_pred             cchh-hhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHH
Confidence            1111 34444555555555433321        25555555554  4456666666555444 21122223345678888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHH--------Hhc-CchHHHHHhhc--------CCChHHHHHHHHHHHHh
Q 009471          407 HVLKAGSLGAQQAAASALCRVCTS-AEMKKLV--------GEA-GCTPLLIKLLE--------AKPNSVREVAAQAISSL  468 (534)
Q Consensus       407 ~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i--------~~~-g~v~~Lv~ll~--------~~~~~v~~~A~~aL~~L  468 (534)
                      .++++++..|++.|..++...+.+ +...+-+        .+. ..=+.|++-.+        +..-++|..|-++++.|
T Consensus      1014 ~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytL 1093 (1233)
T KOG1824|consen 1014 KLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTL 1093 (1233)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHH
Confidence            999999999999999999999876 3322222        111 11122333222        23367899999999999


Q ss_pred             cCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          469 VTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .....++-.+.+   .+.....-|...  -++|......|..|+..
T Consensus      1094 Ldscld~~dit~---Fl~~~~~GL~Dh--ydiKmlt~l~l~rLa~l 1134 (1233)
T KOG1824|consen 1094 LDSCLDRLDITE---FLNHVEDGLEDH--YDIKMLTFLMLARLADL 1134 (1233)
T ss_pred             HHhhhhhccHHH---HHHHHHhhcchh--hHHHHHHHHHHHHHHhh
Confidence            744433332222   122233333332  25777777666666654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.76  E-value=7.1e-05  Score=59.30  Aligned_cols=87  Identities=28%  Similarity=0.437  Sum_probs=71.3

Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471          402 FPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR  480 (534)
Q Consensus       402 i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (534)
                      ++.|++.| +++++.++..|+.+|+++..          ...++.|+++++++++.+|..|+.+|..+.           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            57899988 88899999999999995531          245899999999999999999999999882           


Q ss_pred             hCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471          481 DDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (534)
Q Consensus       481 ~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~  509 (534)
                      +...++.|.+++.++++..++..|..+|.
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            34588999999988766667888888773

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.75  E-value=0.0047  Score=65.27  Aligned_cols=350  Identities=15%  Similarity=0.132  Sum_probs=181.7

Q ss_pred             hchHHHHHHHHh----cC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 009471          153 HGNTRELLARLQ----IG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG  227 (534)
Q Consensus       153 ~~~i~~Ll~~L~----~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~  227 (534)
                      ...++.++..|+    +. +.+.|..++....+++.-....+...+. +.+..+-+.|.+.+..+|..++.+|+.+++..
T Consensus       506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~-~lv~ii~~gl~De~qkVR~itAlalsalaeaa  584 (1172)
T KOG0213|consen  506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLK-PLVKIIEHGLKDEQQKVRTITALALSALAEAA  584 (1172)
T ss_pred             HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhH-HHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence            345666666664    33 5566666666655554211111111111 23444445556667889999999999998755


Q ss_pred             c-hhHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 009471          228 S-CENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC  300 (534)
Q Consensus       228 ~-~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~  300 (534)
                      . +...     ....++..|-.    ........-..++..|...  .+....+ ....+-.+.+=..++|.+++...+.
T Consensus       585 ~Pygie-----~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yy-Trevmlil~rEf~sPDeemkkivLK  658 (1172)
T KOG0213|consen  585 TPYGIE-----QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYY-TREVMLILIREFGSPDEEMKKIVLK  658 (1172)
T ss_pred             CCcchH-----HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHh-HHHHHHHHHHhhCCChHHHHHHHHH
Confidence            2 2211     23333343332    2222222333444445433  2222222 1222344555566788899999999


Q ss_pred             HHHHccCCchHHHHHHhhCcHHHHHHHhhcCCC-------hhHHHHHHH-------------HHHHHccCChHHHHHHHh
Q 009471          301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL-------LGSKEYAAE-------------CLQNLTASNENLRRSVVS  360 (534)
Q Consensus       301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~-------~~v~~~a~~-------------~L~~La~~~~~~~~~i~~  360 (534)
                      ++.+.|.....-........++.++.-......       ..+.+.+..             .+-.+-..++..|.... 
T Consensus       659 Vv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~-  737 (1172)
T KOG0213|consen  659 VVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA-  737 (1172)
T ss_pred             HHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH-
Confidence            999988876666666666677777766542110       011111111             11111112222222221 


Q ss_pred             cCChHHHHHhhcCCc----hHHHHH-HHHHHhhcCccHH------------HH------HhcCcHHHHHHHHhcCCHHHH
Q 009471          361 EGGIRSLLAYLDGPL----PQESAV-GALRNLVGSVSQE------------VL------ISLGFFPRLVHVLKAGSLGAQ  417 (534)
Q Consensus       361 ~g~l~~L~~~L~~~~----~~~~a~-~aL~~La~~~~~~------------~l------~~~~~i~~Lv~lL~~~~~~v~  417 (534)
                       +.+..++..+.-.+    .-+.-+ +.+..+.......            .+      .-..++..++..|+++++.++
T Consensus       738 -etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vR  816 (1172)
T KOG0213|consen  738 -ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVR  816 (1172)
T ss_pred             -HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHH
Confidence             22333333321100    111111 1111111100000            00      001235556677889999999


Q ss_pred             HHHHHHHHHhcCChhHH---HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCC
Q 009471          418 QAAASALCRVCTSAEMK---KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP  494 (534)
Q Consensus       418 ~~A~~aL~~la~~~~~~---~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~  494 (534)
                      +.|+..+..++.--..+   +.+...|.  .|...+....+++-...+.||+.+.....-.+.+---.+.++.|...|.+
T Consensus       817 qqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn  894 (1172)
T KOG0213|consen  817 QQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN  894 (1172)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh
Confidence            99999999998543222   23333332  46677778889999998888888874432222222223677888888887


Q ss_pred             CCchhHHHHHHHHHHhhchh
Q 009471          495 SPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       495 ~~~~~~k~~a~~~L~~L~~~  514 (534)
                      . .+.++.+++..+..++..
T Consensus       895 r-heKVqen~IdLvg~Iadr  913 (1172)
T KOG0213|consen  895 R-HEKVQENCIDLVGTIADR  913 (1172)
T ss_pred             h-HHHHHHHHHHHHHHHHhc
Confidence            6 346788888888887766

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.038  Score=58.42  Aligned_cols=302  Identities=16%  Similarity=0.154  Sum_probs=173.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVS  235 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (534)
                      --+-+..|++.--..|.-.--.+.-|...+.+..+.+     +..+-.=|.+.|+.-...|+.+++++.+.+ .++.+  
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re-~~ea~--  147 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE-MAEAF--  147 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh-HHHHh--
Confidence            3344455555444444444444444555554333322     334444456677888899999999998655 22222  


Q ss_pred             cCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-Cch-
Q 009471          236 EGVLPPLIRLVESG--STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPE-  310 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~-  310 (534)
                         -+-+-++|-++  ...++..|+-+|..|-.. +|...   ..+-...++.+|.+.+..+..++...+.-|+. +++ 
T Consensus       148 ---~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~  221 (938)
T KOG1077|consen  148 ---ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES  221 (938)
T ss_pred             ---hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence               23333677665  445788888888887554 33211   01224677888887776666666666666665 222 


Q ss_pred             HHHHHHhhCcHHHHHHHhh-cCCC-----------hhHHHHHHHHHHHHcc-CChHHHHHHHhcCChHHHHHhhcC-C--
Q 009471          311 VRQMLAEEGIVSVMIKLLD-CGIL-----------LGSKEYAAECLQNLTA-SNENLRRSVVSEGGIRSLLAYLDG-P--  374 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~-~~~~-----------~~v~~~a~~~L~~La~-~~~~~~~~i~~~g~l~~L~~~L~~-~--  374 (534)
                      .+..+  .-++..|..+.. .+.+           +=.+...++.|.+.-. .++..|....+  +++.++...+. |  
T Consensus       222 yk~~~--~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~  297 (938)
T KOG1077|consen  222 YKTCL--PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKS  297 (938)
T ss_pred             HhhhH--HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccc
Confidence            22111  112222322221 1111           1245666777777643 23333333321  23333333332 1  


Q ss_pred             -chH-----HHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHH
Q 009471          375 -LPQ-----ESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLL  446 (534)
Q Consensus       375 -~~~-----~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~L  446 (534)
                       .++     -..+.-..+|+.  ....+.+.  ..+..|-.+|.+..+.++..|...++.|+.+......+..+  ...+
T Consensus       298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~I  373 (938)
T KOG1077|consen  298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTI  373 (938)
T ss_pred             cchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHH
Confidence             222     222333344444  22233332  35788999999999999999999999999875555555444  6778


Q ss_pred             HHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471          447 IKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKR  480 (534)
Q Consensus       447 v~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (534)
                      +..++ ..+..+|.+|...|+.+ .+.+|.+.++.
T Consensus       374 i~sLkterDvSirrravDLLY~m-cD~~Nak~IV~  407 (938)
T KOG1077|consen  374 INSLKTERDVSIRRRAVDLLYAM-CDVSNAKQIVA  407 (938)
T ss_pred             HHHhccccchHHHHHHHHHHHHH-hchhhHHHHHH
Confidence            88888 78999999999999888 68888888876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=0.0012  Score=71.96  Aligned_cols=220  Identities=17%  Similarity=0.141  Sum_probs=162.1

Q ss_pred             HHHHHHHHHccC----CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471          296 AAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL  371 (534)
Q Consensus       296 ~~a~~aL~nLa~----~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L  371 (534)
                      .+=+++|.-|+.    ++-.-..-..-|++|.+++||++... +.+.--+.+=..|-.-++.++..+++++|-..+++++
T Consensus       485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~-ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR-ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH-hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            344445544443    33333333457999999999999887 7777777777777777899999999999999999988


Q ss_pred             cC-----CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC-hhHHHHHHhcCc
Q 009471          372 DG-----PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS-AEMKKLVGEAGC  442 (534)
Q Consensus       372 ~~-----~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~  442 (534)
                      ++     ++-+..|+.+|..++.  ....+...+.+.+...+..|+++ .+-+++..+.+|+.|-.+ ++.+=.=.+.++
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            75     3668889999999998  45667778899999999999885 689999999999999876 555555566789


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhcCCC----c----chHHHHh-------hCCCH----HHHHhhcCCCCchhHHHH
Q 009471          443 TPLLIKLLEAKPNSVREVAAQAISSLVTLP----Q----NCREVKR-------DDKSV----PNLVQLLDPSPQNTAKKY  503 (534)
Q Consensus       443 v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~----~----~~~~~~~-------~~~~v----~~Lv~lL~~~~~~~~k~~  503 (534)
                      ...|..++.++.++||.+|..||..+....    +    .+++.+.       -++.+    ..++.++... ...++..
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~e  722 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTE  722 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHH
Confidence            999999999999999999999999998642    1    1111111       11222    2556666655 3367777


Q ss_pred             HHHHHHhhchhHHH
Q 009471          504 AVACLASLSPSARK  517 (534)
Q Consensus       504 a~~~L~~L~~~~k~  517 (534)
                      .+.+|.....+.+.
T Consensus       723 v~v~ls~~~~g~~~  736 (1387)
T KOG1517|consen  723 VVVALSHFVVGYVS  736 (1387)
T ss_pred             HHHHHHHHHHhhHH
Confidence            77788777776433

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.71  E-value=0.0048  Score=62.24  Aligned_cols=184  Identities=25%  Similarity=0.289  Sum_probs=137.4

Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA  316 (534)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (534)
                      ..++.+.+.+.+.+..++..++..+..+..          .-.++.+..++.+.++.+|..+..+|.++-.         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD---------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence            468888999999988899888888655432          2235888999999999999999988876543         


Q ss_pred             hhCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--------------hHHHHH
Q 009471          317 EEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--------------PQESAV  381 (534)
Q Consensus       317 e~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--------------~~~~a~  381 (534)
                       ...++.+++++.. ++. .++..+..+|..+-...           .+..++..++++.              ++..+.
T Consensus       104 -~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         104 -PEAVPPLVELLENDENE-GVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             -hhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence             4568888898884 554 89999999999877521           1566666665522              344444


Q ss_pred             HHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          382 GALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       382 ~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      ..+..+-         ....++.+...+...+..++..|+.+|..+....        ....+.+...+.+.+..+|..+
T Consensus       171 ~~l~~~~---------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~  233 (335)
T COG1413         171 EALGELG---------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA  233 (335)
T ss_pred             HHHHHcC---------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence            4444443         2346788999999999999999999999988653        2446777888888889999988


Q ss_pred             HHHHHHhc
Q 009471          462 AQAISSLV  469 (534)
Q Consensus       462 ~~aL~~L~  469 (534)
                      ..+|..+-
T Consensus       234 ~~~l~~~~  241 (335)
T COG1413         234 LLALGEIG  241 (335)
T ss_pred             HHHhcccC
Confidence            88888774

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.68  E-value=0.00098  Score=63.25  Aligned_cols=184  Identities=18%  Similarity=0.194  Sum_probs=117.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcC--hHhHHHHhc--CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCH
Q 009471          164 QIGHLEAKHKALDSLVEAMKED--EKNVLAVMG--RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVL  239 (534)
Q Consensus       164 ~~~~~~~~~~A~~~L~~l~~~~--~~~~~~i~~--~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i  239 (534)
                      .+.+.+.|.+|+..|..++.++  ......+.+  ...+..+...+++....+...|+.++..++..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5678999999999999998776  222222221  045567777777767888999999999998754322111234468


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch-----HHH
Q 009471          240 PPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE-----VRQ  313 (534)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~-----~~~  313 (534)
                      +.|++.+.++...+++.|..+|..+..+-. ....+     ++.+...+.+.++.+|..++..+..+...-.     ...
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            999999999999999999999999988655 22322     2667777888999999999998888765322     111


Q ss_pred             HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                      ...-..+++.+...+.++++ ++|..|-.++..+....+.
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~-~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADP-EVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-H-HHHHHHHHHHHHHHHHH-H
T ss_pred             cchHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHCCH
Confidence            11114567888888889887 8999999999998764333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.65  E-value=0.0035  Score=65.52  Aligned_cols=271  Identities=17%  Similarity=0.176  Sum_probs=175.8

Q ss_pred             HHHHHHhhcChhhHHHHHhCCChHHHHHHH----------ccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHH
Q 009471          258 TISLQRLSMSAEMARAIVGHGGVRPLIEIC----------QTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIK  326 (534)
Q Consensus       258 ~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll----------~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~  326 (534)
                      ..+|.-++.++.+...+....++..|.++-          ...++.+...|+.+|+|+.. .+..|+.+.+.|..+.+++
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            456777777777777777777777777665          23577889999999999887 4588888999999999999


Q ss_pred             HhhcC-----CChhHHHHHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------Cc-----------hHHHHH
Q 009471          327 LLDCG-----ILLGSKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PL-----------PQESAV  381 (534)
Q Consensus       327 ll~~~-----~~~~v~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~-----------~~~~a~  381 (534)
                      .+...     +. ++.....+.|.-++......+..++++ +++..+...+..        ..           ....++
T Consensus        82 ~Lk~~~~~~~~~-d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   82 RLKNYSDSSQPS-DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHcccccCCCh-hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            99766     44 788889999999998777777777754 788877776632        10           135678


Q ss_pred             HHHHHhhcCccHHHH-HhcCcHHHHHHHHhcC---------CHHHHHHHHHHHHHhcCC-hhH-------HHHH----Hh
Q 009471          382 GALRNLVGSVSQEVL-ISLGFFPRLVHVLKAG---------SLGAQQAAASALCRVCTS-AEM-------KKLV----GE  439 (534)
Q Consensus       382 ~aL~~La~~~~~~~l-~~~~~i~~Lv~lL~~~---------~~~v~~~A~~aL~~la~~-~~~-------~~~i----~~  439 (534)
                      +++-|+......... .....++.++.++..-         .......++.+|.++-.. .+.       ...+    ..
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            888888761111111 1233455555544211         136677888888887321 111       0000    11


Q ss_pred             cCchHHHHHhhc----C-C---ChHHHHHHHHHHHHhcCCCcchHHHHh----------------hCCCHHHHHhhcCCC
Q 009471          440 AGCTPLLIKLLE----A-K---PNSVREVAAQAISSLVTLPQNCREVKR----------------DDKSVPNLVQLLDPS  495 (534)
Q Consensus       440 ~g~v~~Lv~ll~----~-~---~~~v~~~A~~aL~~L~~~~~~~~~~~~----------------~~~~v~~Lv~lL~~~  495 (534)
                      ...+..|+++++    . .   -.+.-...+.+|..++......+.+++                ....-..|++++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            125566666663    1 1   123445555666666654443333333                223445799999887


Q ss_pred             CchhHHHHHHHHHHhhchh-HHHHHHHHhhcccccc
Q 009471          496 PQNTAKKYAVACLASLSPS-ARKLLERLERGRLRSF  530 (534)
Q Consensus       496 ~~~~~k~~a~~~L~~L~~~-~k~~~~~l~~~~~~~~  530 (534)
                      . ..+|..+...|..||.. +.++++..+-|..-.+
T Consensus       321 ~-~~~k~~vaellf~Lc~~d~~~~v~~~GyG~AaG~  355 (446)
T PF10165_consen  321 D-PQLKDAVAELLFVLCKEDASRFVKYVGYGNAAGF  355 (446)
T ss_pred             C-chHHHHHHHHHHHHHhhhHHHHHHHcCchhHHHH
Confidence            4 67999999999999975 8888888776554433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.65  E-value=0.0049  Score=66.83  Aligned_cols=334  Identities=16%  Similarity=0.142  Sum_probs=177.7

Q ss_pred             CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHH
Q 009471          166 GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLI  243 (534)
Q Consensus       166 ~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv  243 (534)
                      +++-.|..|.+++..++...-..-..-+-..+++.+...+.......+...+.++..|..+..  ...... .-++..+-
T Consensus       621 ~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~  699 (1233)
T KOG1824|consen  621 GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELP  699 (1233)
T ss_pred             hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhh
Confidence            444555555555555543222111111122456666666666666667777777666654331  111111 12344455


Q ss_pred             HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCCh-------------------------------
Q 009471          244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS-------------------------------  292 (534)
Q Consensus       244 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~-------------------------------  292 (534)
                      .++...+..+.+.|..+|..+...++....-...-.++.++.+++++--                               
T Consensus       700 ~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~  779 (1233)
T KOG1824|consen  700 PLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSL  779 (1233)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence            5666667778888888888888776655444445556666666665310                               


Q ss_pred             -----------HHH-------HHHHHHHHHccCCchHHHHHHhhCcHHH-HHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          293 -----------VSQ-------AAAACTLKNISAVPEVRQMLAEEGIVSV-MIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       293 -----------~~~-------~~a~~aL~nLa~~~~~~~~i~e~g~i~~-L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                                 .+-       ..++.+|...+. .+.      ...... +.++...+....++..|.-.++.+-.+.+.
T Consensus       780 lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~-~~s------~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~  852 (1233)
T KOG1824|consen  780 LTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP-QKS------KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL  852 (1233)
T ss_pred             HcCCcccccccchhHHHHHHHHHHHHHHHHhcc-ccc------hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence                       001       111222222111 011      111222 333333333336777888888888774332


Q ss_pred             HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-C--ccHHHHHh---------cCcHHHHHHHHhcCC------
Q 009471          354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-S--VSQEVLIS---------LGFFPRLVHVLKAGS------  413 (534)
Q Consensus       354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~--~~~~~l~~---------~~~i~~Lv~lL~~~~------  413 (534)
                      ...    .+.-..+++.+.+  .+++..|..+|++++. +  .....+.+         +=.+..|.+.+...+      
T Consensus       853 s~~----~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~  928 (1233)
T KOG1824|consen  853 SPQ----NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKP  928 (1233)
T ss_pred             Ccc----hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhh
Confidence            211    1112245555655  4577788888888876 2  11111100         111223333333322      


Q ss_pred             -----------------HHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-Ccch
Q 009471          414 -----------------LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNC  475 (534)
Q Consensus       414 -----------------~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~  475 (534)
                                       ...+--.+.+|+.|+..+       ....+|.|-..+.++.+..|-.+.-+..+...+ ++-.
T Consensus       929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-------pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~i 1001 (1233)
T KOG1824|consen  929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-------PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPI 1001 (1233)
T ss_pred             hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-------hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCcc
Confidence                             233333344444443220       023678888888999999998888888877654 5555


Q ss_pred             HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHH
Q 009471          476 REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLER  521 (534)
Q Consensus       476 ~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~  521 (534)
                      +.+.+  ..+...+.+++.. +..++..|+.++-+.+.+-..+++-
T Consensus      1002 d~~lk--~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrD 1044 (1233)
T KOG1824|consen 1002 DPLLK--QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRD 1044 (1233)
T ss_pred             CHHHH--HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHH
Confidence            66665  4677777788765 4479999999998888774444433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.036  Score=57.27  Aligned_cols=350  Identities=13%  Similarity=0.083  Sum_probs=196.5

Q ss_pred             hhchHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcChHhHH-HHh----------cCCcHHHHHHHhcCCCHHHHHHHHH
Q 009471          152 THGNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVL-AVM----------GRSNIAALVQLLTATSPRIREKTVT  218 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~--~~~~~~~~A~~~L~~l~~~~~~~~~-~i~----------~~g~v~~Lv~lL~~~~~~v~~~A~~  218 (534)
                      +..++.-+.+.+-.  .+++.|.-|.-.|.+-+..++..++ ...          ++..-...++.|+++.+..-..|+.
T Consensus        37 F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaq  116 (858)
T COG5215          37 FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQ  116 (858)
T ss_pred             HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            44445555555533  3355555555566555433332221 110          1111223456788888999999999


Q ss_pred             HHHHhhcCCc-hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCC-hHHHHH-HHcc-CChH
Q 009471          219 VICSLAESGS-CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGG-VRPLIE-ICQT-GDSV  293 (534)
Q Consensus       219 ~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~-i~~Lv~-ll~~-~~~~  293 (534)
                      .+..++..+- +-.   -.|....+++-..++ ...++..+..++.+++...+....+...+. +-.++. -++. .+..
T Consensus       117 l~aaIA~~Elp~~~---wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~a  193 (858)
T COG5215         117 LLAAIARMELPNSL---WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSA  193 (858)
T ss_pred             HHHHHHHhhCcccc---chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHH
Confidence            9999987552 100   012334444444444 556788899999999886544322322332 233332 2333 3567


Q ss_pred             HHHHHHHHHHH-ccCCchHHHHHHhhC----cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471          294 SQAAAACTLKN-ISAVPEVRQMLAEEG----IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (534)
Q Consensus       294 ~~~~a~~aL~n-La~~~~~~~~i~e~g----~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (534)
                      +|..++.+|.+ +-.   .+..+-.++    .++..++.-+.++ .+++..+..||..|..-+-..-+...+........
T Consensus       194 vRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~  269 (858)
T COG5215         194 VRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG  269 (858)
T ss_pred             HHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999887 332   223332222    2333444444444 48999999999998864333333444444444455


Q ss_pred             HhhcC--CchHHHHHHHHHHhhcCc--cHHHH--------Hh--------cCcHHHHHHHHhc--CC-----HHHHHHHH
Q 009471          369 AYLDG--PLPQESAVGALRNLVGSV--SQEVL--------IS--------LGFFPRLVHVLKA--GS-----LGAQQAAA  421 (534)
Q Consensus       369 ~~L~~--~~~~~~a~~aL~~La~~~--~~~~l--------~~--------~~~i~~Lv~lL~~--~~-----~~v~~~A~  421 (534)
                      +.+.+  +++...++..-..+|.++  ..-..        .+        ..++|.|+++|..  ++     -.+...|.
T Consensus       270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~  349 (858)
T COG5215         270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS  349 (858)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence            56665  567777777777777621  11111        11        2358889999954  22     25667777


Q ss_pred             HHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc--hHHHHhhCCCHHHHHhhcCCCCchh
Q 009471          422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN--CREVKRDDKSVPNLVQLLDPSPQNT  499 (534)
Q Consensus       422 ~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~--~~~~~~~~~~v~~Lv~lL~~~~~~~  499 (534)
                      .+|.-++....  ..+.+ .+..-.-+-+.+++..-|+.|..++.++...+..  ...++.  ..++.+..++.+. .--
T Consensus       350 sCLqlfaq~~g--d~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m~D~-~l~  423 (858)
T COG5215         350 SCLQLFAQLKG--DKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP--QALPGIENEMSDS-CLW  423 (858)
T ss_pred             HHHHHHHHHhh--hHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH--hhhHHHHHhcccc-eee
Confidence            77776664311  11111 1233333445678888899999999999644322  222332  4566666666532 334


Q ss_pred             HHHHHHHHHHhhchh
Q 009471          500 AKKYAVACLASLSPS  514 (534)
Q Consensus       500 ~k~~a~~~L~~L~~~  514 (534)
                      +|..+++|+..++.+
T Consensus       424 vk~ttAwc~g~iad~  438 (858)
T COG5215         424 VKSTTAWCFGAIADH  438 (858)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            899999999999887

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.63  E-value=0.0023  Score=66.23  Aligned_cols=260  Identities=17%  Similarity=0.142  Sum_probs=165.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc---hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH-
Q 009471          197 NIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-  272 (534)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~-  272 (534)
                      .|...+.+|++..+.+|+.|+...+.|+.--.   ..+.+...|.  .|..-|....+++......+++.+........ 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            36677788999999999999999888864322   1233334343  25566677788888777777777654322211 


Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h---HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E---VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~---~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La  348 (534)
                      +---.|.+|.|..+|++....++......+..++... +   .++-|   .+---|++.|.+-+. +++.+|...++.|+
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nK-eiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNK-EIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhH-HHHHhhhhhhhhHH
Confidence            0012567899999999999999999888888888743 2   23222   233346777777776 89999999998887


Q ss_pred             cCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          349 ASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       349 ~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      ..       +--..++..|+   ++-.+++.-.++-..++-.-..+.-.-..++|.|+.=-..++..||.-.+++++.+-
T Consensus       759 ~a-------iGPqdvL~~Ll---nnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         759 RA-------IGPQDVLDILL---NNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             hh-------cCHHHHHHHHH---hcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence            51       11112233333   443333222221111111000000011335777777777788899999999999887


Q ss_pred             CC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc
Q 009471          429 TS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN  474 (534)
Q Consensus       429 ~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~  474 (534)
                      ..  ...++++  .-..|.|-+-+.+.++.-|.-|+..+.+|+.+.++
T Consensus       829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence            54  4445555  33477888888888998899999999999976443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.60  E-value=0.0011  Score=52.45  Aligned_cols=87  Identities=28%  Similarity=0.338  Sum_probs=69.9

Q ss_pred             HHHHHHHH-ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471          239 LPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (534)
Q Consensus       239 i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (534)
                      |+.|++.| +++++.++..++.+|.++..    .      ..++.|+.++.++++.++..++.+|..+.          +
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD----P------EAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----H------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----H------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57899988 78899999999999995521    1      22589999999999999999999999873          3


Q ss_pred             hCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471          318 EGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (534)
Q Consensus       318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~  345 (534)
                      ...++.|.+++.+++...++..|+.+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            5579999999988766456888888774

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.58  E-value=0.0051  Score=67.27  Aligned_cols=347  Identities=15%  Similarity=0.141  Sum_probs=215.3

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--h
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--C  229 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~  229 (534)
                      .....+.++.....++...+.........+...-..   .......+++...++++...+.+...+.-...++....  +
T Consensus       314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~  390 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC  390 (759)
T ss_pred             hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence            334455555555555555555555555555431110   11122447888888888888888888888888876543  5


Q ss_pred             hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      ...+....+++.+-.+..+.+..++...+.....+..-...-..+  ....+.+...+++..+.++......+..+-...
T Consensus       391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~  468 (759)
T KOG0211|consen  391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN  468 (759)
T ss_pred             ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence            666667777888888888888888887777666664322210111  223466777788888888887776654443322


Q ss_pred             -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                       ...........++.+..+-.+... .++......+..++....   ..++....-+.+...+.+  ..+++.|...+.-
T Consensus       469 ~v~g~~~~s~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~  544 (759)
T KOG0211|consen  469 DVIGISTVSNSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPA  544 (759)
T ss_pred             CcccchhhhhhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence             233334445567777777766654 778888888888886332   233333333333344444  5678888888888


Q ss_pred             hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (534)
Q Consensus       387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~  466 (534)
                      ++..-. ........++.++.....++.-.+...+.++..++.  -+-..+.....+|.+.++..+..+++|..++..|.
T Consensus       545 l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~  621 (759)
T KOG0211|consen  545 LVETFG-SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLP  621 (759)
T ss_pred             HHHHhC-cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence            876222 222334457777777766666677777777776652  22223333345999999999999999999999999


Q ss_pred             HhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       467 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .+...-..  . .. .+.+.++.+-|..+++-.+|.+|.-++..+..+
T Consensus       622 ~i~~~L~~--~-~~-~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~  665 (759)
T KOG0211|consen  622 KILKLLDE--S-VR-DEEVLPLLETLSSDQELDVRYRAILAFGSIELS  665 (759)
T ss_pred             HHHhhcch--H-HH-HHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence            88633211  1 11 234455555555555556888887776666544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.48  E-value=0.008  Score=62.84  Aligned_cols=253  Identities=15%  Similarity=0.133  Sum_probs=163.7

Q ss_pred             HHHHHhhcChHhHHHHhcCCcHHHHHHHh----------cCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHH
Q 009471          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLL----------TATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRL  245 (534)
Q Consensus       177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL----------~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~l  245 (534)
                      +|.-+. .++.+...+....++..|.++-          ...++.+...|+++|+|+....+ .|..+++.|..+.++..
T Consensus         4 ~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~   82 (446)
T PF10165_consen    4 TLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER   82 (446)
T ss_pred             HHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence            333333 3444555666667777777765          23458999999999999998776 88899999999999999


Q ss_pred             HccC-----CHHHHHHHHHHHHHhhcC-hhhHHHHHh-CCChHHHHHHHcc---------C--------ChHHHHHHHHH
Q 009471          246 VESG-----STVGKEKATISLQRLSMS-AEMARAIVG-HGGVRPLIEICQT---------G--------DSVSQAAAACT  301 (534)
Q Consensus       246 L~~~-----~~~~~~~A~~~L~~Ls~~-~~~~~~l~~-~g~i~~Lv~ll~~---------~--------~~~~~~~a~~a  301 (534)
                      |+..     +.++.-...+.|.-++.. .+.+..+++ ++++..++..+..         .        +......++.+
T Consensus        83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl  162 (446)
T PF10165_consen   83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL  162 (446)
T ss_pred             HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence            9987     778888899999888764 555656655 7888888776642         0        22334677888


Q ss_pred             HHHccCCchHHHHHHhhCcHHHHHHHhhcC--------CChhHHHHHHHHHHHHccCChHH-------HHH----HHhcC
Q 009471          302 LKNISAVPEVRQMLAEEGIVSVMIKLLDCG--------ILLGSKEYAAECLQNLTASNENL-------RRS----VVSEG  362 (534)
Q Consensus       302 L~nLa~~~~~~~~i~e~g~i~~L~~ll~~~--------~~~~v~~~a~~~L~~La~~~~~~-------~~~----i~~~g  362 (534)
                      +.|+.........-.+...++.++.++..-        .......+++.+|.|+-......       ...    .....
T Consensus       163 lFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~  242 (446)
T PF10165_consen  163 LFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMD  242 (446)
T ss_pred             HHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChH
Confidence            889876432211111233344444443211        11256778888888874321111       000    01233


Q ss_pred             ChHHHHHhhcC----------CchHHHHHHHHHHhhc-Cc-cHHHHH----------------hcCcHHHHHHHHhcCCH
Q 009471          363 GIRSLLAYLDG----------PLPQESAVGALRNLVG-SV-SQEVLI----------------SLGFFPRLVHVLKAGSL  414 (534)
Q Consensus       363 ~l~~L~~~L~~----------~~~~~~a~~aL~~La~-~~-~~~~l~----------------~~~~i~~Lv~lL~~~~~  414 (534)
                      .+..|+++|+.          .+...+.+.+|.+++. .. .+..+.                ...+-.+|++++.+..+
T Consensus       243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~  322 (446)
T PF10165_consen  243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDP  322 (446)
T ss_pred             HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCc
Confidence            46677777742          1345677788888877 22 222111                13457789999988889


Q ss_pred             HHHHHHHHHHHHhcCC
Q 009471          415 GAQQAAASALCRVCTS  430 (534)
Q Consensus       415 ~v~~~A~~aL~~la~~  430 (534)
                      .++..++..+..||..
T Consensus       323 ~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  323 QLKDAVAELLFVLCKE  338 (446)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            9999999999999854

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.0014  Score=66.76  Aligned_cols=177  Identities=16%  Similarity=0.212  Sum_probs=132.8

Q ss_pred             HHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCC
Q 009471          256 KATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGIL  333 (534)
Q Consensus       256 ~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~  333 (534)
                      .++.+|..++.+-.. +-.+.+...++.|+.+|.+++..+..-+...++|+.. .+..+..+.+.|++..++.++.+.++
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            344455555554333 4457778889999999998777777888888999876 56788889999999999999998877


Q ss_pred             hhHHHHHHHHHHHHccCChH-HHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhcC--c---cHHHHH---hcC-c
Q 009471          334 LGSKEYAAECLQNLTASNEN-LRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVGS--V---SQEVLI---SLG-F  401 (534)
Q Consensus       334 ~~v~~~a~~~L~~La~~~~~-~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~~--~---~~~~l~---~~~-~  401 (534)
                       ..|.+..+.++++..+.+. .+-......|+..++.+..+|  .+|..++..|+|+.-+  .   ..+...   ... +
T Consensus       488 -aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         488 -ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             -hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence             8999999999999986544 344566788899999999885  5899999999999862  1   111111   111 4


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhcCChhH
Q 009471          402 FPRLVHVLKAGSLGAQQAAASALCRVCTSAEM  433 (534)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~  433 (534)
                      ...|++.++..+|-.-...+..|.+++...+.
T Consensus       567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~  598 (743)
T COG5369         567 FKRLIDKYEENNPMEILEGCYILVRNAACDDT  598 (743)
T ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHhccch
Confidence            56777778888886666778888888755333

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.0025  Score=66.54  Aligned_cols=254  Identities=14%  Similarity=0.129  Sum_probs=152.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh------hhHH
Q 009471          199 AALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMAR  272 (534)
Q Consensus       199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~~~~  272 (534)
                      .-|..+..+.|..+|..|+..|..|.+....-..     .....++++.+.+..++..|...++-.+.-.      ++-+
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            3367777777788888888888887764432222     3667788899998889988876665544221      1100


Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH----------------------------------------
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV----------------------------------------  311 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~----------------------------------------  311 (534)
                      .=....+...+...+.+.+..+|..|+.+|+.+-..+ +.                                        
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a  355 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA  355 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence            0001122344555555666666655555554443321 11                                        


Q ss_pred             ----------HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHH
Q 009471          312 ----------RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (534)
Q Consensus       312 ----------~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~  379 (534)
                                -..|+..|+-..++.-++++.- +|+.+|+..+..|+...+.....     .+.-|+.++.+  .++|..
T Consensus       356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~-EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~  429 (823)
T KOG2259|consen  356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFY-EVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLK  429 (823)
T ss_pred             cCchhhccccccccccccccceeeeechHHHH-HHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHH
Confidence                      1223334444555555555554 89999999999999876654432     36778888877  678999


Q ss_pred             HHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHH
Q 009471          380 AVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE  459 (534)
Q Consensus       380 a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~  459 (534)
                      |+.+|..++..    ..+...-++.+...|.+.++++++..-..|.+.=.+....-.+    ++..|.+-+. ..|.=+.
T Consensus       430 ai~aL~~Is~~----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m----~v~~lL~~L~-kyPqDrd  500 (823)
T KOG2259|consen  430 AIFALTMISVH----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM----CVAHLLKNLG-KYPQDRD  500 (823)
T ss_pred             HHHHHHHHHHH----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHhh-hCCCCcH
Confidence            99999999863    2233445788999999999999988887777654332222222    2333333333 2222334


Q ss_pred             HHHHHHHHhcCCC
Q 009471          460 VAAQAISSLVTLP  472 (534)
Q Consensus       460 ~A~~aL~~L~~~~  472 (534)
                      ....++..+..+.
T Consensus       501 ~i~~cm~~iGqnH  513 (823)
T KOG2259|consen  501 EILRCMGRIGQNH  513 (823)
T ss_pred             HHHHHHHHHhccC
Confidence            4555666665443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.045  Score=58.37  Aligned_cols=315  Identities=15%  Similarity=0.137  Sum_probs=193.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCchhHHHHh
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLVS  235 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~  235 (534)
                      .++...|..|+.+.|.+|+..+..+....++..      +..-.+++. |-+.+.+++.. +...+.+...-.....+.+
T Consensus        23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p------~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~   95 (948)
T KOG1058|consen   23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLP------SLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLH   95 (948)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCch------HHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHH
Confidence            356677899999999999998887765444321      122233332 33444444443 3455555432221111211


Q ss_pred             cC--CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471          236 EG--VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (534)
Q Consensus       236 ~g--~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (534)
                      +-  ++..+-+=|+.++..+|....+.|+.|-. ++-...+     +|.+...+.+.++-+|+.|..++..+-.+.   .
T Consensus        96 EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE-~ELlepl-----~p~IracleHrhsYVRrNAilaifsIyk~~---~  166 (948)
T KOG1058|consen   96 EMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE-PELLEPL-----MPSIRACLEHRHSYVRRNAILAIFSIYKNF---E  166 (948)
T ss_pred             HHHHHHHHHhhhccCchHhhcchhhhhhhhcCc-HHHhhhh-----HHHHHHHHhCcchhhhhhhheeehhHHhhh---h
Confidence            11  23445556677899999999999998854 3333333     477778888899999999988887665431   1


Q ss_pred             HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-----CchHHHHHHHHHHhh
Q 009471          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNLV  388 (534)
Q Consensus       314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-----~~~~~~a~~aL~~La  388 (534)
                      .++ ..+-..+-+.|..+.++..+.+|...|...-   ++..        +..|...++.     +..+...+..++.-|
T Consensus       167 ~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~ErA--------l~Yl~~~idqi~~~~~~LqlViVE~Irkv~  234 (948)
T KOG1058|consen  167 HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTD---PERA--------LNYLLSNIDQIPSFNDSLQLVIVELIRKVC  234 (948)
T ss_pred             hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHHH--------HHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence            111 2223334444443333367888776665532   2221        3333333332     345667777777777


Q ss_pred             c-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHH
Q 009471          389 G-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAIS  466 (534)
Q Consensus       389 ~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~  466 (534)
                      . ++.    ....++..+..+|.+.++.|..+|+..|.+++..+..-+.-     ...+++++. ..+..+.--...-|.
T Consensus       235 ~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~  305 (948)
T KOG1058|consen  235 LANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLS  305 (948)
T ss_pred             hcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHH
Confidence            5 211    23557899999999999999999999999999887655543     445566654 233444444444444


Q ss_pred             HhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       467 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .+.   .+.+.+++  +.+.-.++.|++. +-+++..+......|+.+
T Consensus       306 ~l~---~~~~~il~--~l~mDvLrvLss~-dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  306 ELK---ALHEKILQ--GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHh---hhhHHHHH--HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhh
Confidence            442   55566666  5778888888886 456888888888888877

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.30  E-value=0.022  Score=52.82  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=105.1

Q ss_pred             HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccC
Q 009471          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG  249 (534)
Q Consensus       177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~  249 (534)
                      +|.+.....|+.+..+.+...--.|-.+|...     ....|..++.+++.+...++  .-..+...+++|..++.++.+
T Consensus       101 ~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G  180 (293)
T KOG3036|consen  101 ALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG  180 (293)
T ss_pred             HHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc
Confidence            34444444567778888766655566666543     37789999999999998775  566777899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcChhhHHHHHh-CC-------ChHHH-HHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471          250 STVGKEKATISLQRLSMSAEMARAIVG-HG-------GVRPL-IEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (534)
Q Consensus       250 ~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g-------~i~~L-v~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (534)
                      +...+..|..++..+-.++..-..+++ ..       .+..+ ..+.+.+++....++.++..+|+.++..|..+..
T Consensus       181 SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~  257 (293)
T KOG3036|consen  181 SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS  257 (293)
T ss_pred             cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            999999999999998877765544433 11       11222 2344567888889999999999999988887754

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.29  E-value=0.0012  Score=68.22  Aligned_cols=257  Identities=13%  Similarity=0.119  Sum_probs=162.8

Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH---HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHH
Q 009471          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR---AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM  314 (534)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~---~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~  314 (534)
                      ++..++.+|++.++.++..|+.....|+.--.++.   .+...|.  .|.+-+....|++.-..+.+++.+......+..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            46777888999999999999999888875433322   2222332  355677778899888888877777654432211


Q ss_pred             H-HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH---HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471          315 L-AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN---LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV  388 (534)
Q Consensus       315 i-~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~---~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La  388 (534)
                      - --.|++|.+..+|++.+. .++.+.+..++.|+...+.   .|+-+.   .-=-|+..|.+  .+++..|...++.++
T Consensus       683 qpPi~~ilP~ltPILrnkh~-Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQ-KVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             CCchhhccccccHhhhhhhH-HHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            0 016889999999999887 8999999999999986554   122111   01124444443  678999999999998


Q ss_pred             cCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471          389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (534)
Q Consensus       389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L  468 (534)
                      ..-.++     .++..|++-|+..+...+....-++.-.+..   +   +-..++|.|+.=...++..+|.-.+.+++.+
T Consensus       759 ~aiGPq-----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~---c---gpfsVlP~lm~dY~TPe~nVQnGvLkam~fm  827 (975)
T COG5181         759 RAIGPQ-----DVLDILLNNLKVQERQQRVCTSVAISIVAEY---C---GPFSVLPTLMSDYETPEANVQNGVLKAMCFM  827 (975)
T ss_pred             hhcCHH-----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---c---CchhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence            733332     2345555555444444444444444333321   1   1134677777766778888999999999988


Q ss_pred             cCCCcch-HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          469 VTLPQNC-REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       469 ~~~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ...-.+. ...+-  ...|.|-..|... +..-+..|..++.+|+-+
T Consensus       828 Feyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         828 FEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             HHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence            7554332 23332  2334444444443 335678888888888766

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.24  E-value=0.00079  Score=44.56  Aligned_cols=40  Identities=33%  Similarity=0.490  Sum_probs=36.4

Q ss_pred             hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                      ++++..+.+.|+++.|+.++.++++.++..++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4577889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=0.077  Score=60.87  Aligned_cols=273  Identities=17%  Similarity=0.152  Sum_probs=154.7

Q ss_pred             hhhhhchHHHHHHHH---hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471          149 EATTHGNTRELLARL---QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE  225 (534)
Q Consensus       149 ~~~~~~~i~~Ll~~L---~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (534)
                      .+.++.+.+.|+.+|   +-+.......|+..+.+.+-.+++....-.-..+..-|+.-|.+....+|+.++-+|..|-.
T Consensus       989 ~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen  989 GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred             HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence            455566677777666   23333345578889999887776543333333567777777888889999999999999988


Q ss_pred             CCch---hHHHHhcCCHHHHHHHHccCCHHHHH---HHHHHHHHhhcC---hhh----HHHHHhCCChHHHH--HHHccC
Q 009471          226 SGSC---ENWLVSEGVLPPLIRLVESGSTVGKE---KATISLQRLSMS---AEM----ARAIVGHGGVRPLI--EICQTG  290 (534)
Q Consensus       226 ~~~~---~~~l~~~g~i~~Lv~lL~~~~~~~~~---~A~~~L~~Ls~~---~~~----~~~l~~~g~i~~Lv--~ll~~~  290 (534)
                      ..+.   .+.+-  .....+.+.+++-...+|+   .++.+|..++..   ..+    ++.+  ...+|.|+  .++ +.
T Consensus      1069 g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~ 1143 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SK 1143 (1702)
T ss_pred             CCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cc
Confidence            7653   23322  4567777888776666665   455666666421   111    1111  12234333  122 45


Q ss_pred             ChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc-CChHHHHHHHh-------
Q 009471          291 DSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVS-------  360 (534)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~-------  360 (534)
                      -+++|..+..++..|+...  ..+..+  ...++.|+.....-.+.-.-+-++++ .|+.. .-+..|..+.+       
T Consensus      1144 v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeT 1220 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMET 1220 (1702)
T ss_pred             hHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHH
Confidence            6789999999999998754  233322  34566666666544331122233333 22111 01112211111       


Q ss_pred             -------------cCChHHHHHhhcC---CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHH
Q 009471          361 -------------EGGIRSLLAYLDG---PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAAS  422 (534)
Q Consensus       361 -------------~g~l~~L~~~L~~---~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~  422 (534)
                                   +..+|.+.+++++   -.++..|..++.-|+..-. ..+  .....+..++..+++.++.+++.-+.
T Consensus      1221 i~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~-~emtP~sgKll~al~~g~~dRNesv~kafAs 1299 (1702)
T KOG0915|consen 1221 INKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG-SEMTPYSGKLLRALFPGAKDRNESVRKAFAS 1299 (1702)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc-cccCcchhHHHHHHhhccccccHHHHHHHHH
Confidence                         2335555555554   3456677777777764100 001  11123455555557788899998888


Q ss_pred             HHHHhcCC
Q 009471          423 ALCRVCTS  430 (534)
Q Consensus       423 aL~~la~~  430 (534)
                      +.+.++..
T Consensus      1300 AmG~L~k~ 1307 (1702)
T KOG0915|consen 1300 AMGYLAKF 1307 (1702)
T ss_pred             HHHHHHhc
Confidence            88888753

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.18  E-value=0.015  Score=58.04  Aligned_cols=213  Identities=12%  Similarity=0.099  Sum_probs=157.4

Q ss_pred             HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH-----HHHHH-h-cCChHHHHHhhcCCchHHHHHHHH
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL-----RRSVV-S-EGGIRSLLAYLDGPLPQESAVGAL  384 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~-----~~~i~-~-~g~l~~L~~~L~~~~~~~~a~~aL  384 (534)
                      ...+...+.+..|+..+..-+. +.+..+..+..++-......     ...+. + ...+..|+..-+++++--.+...|
T Consensus        69 a~Ei~~~dll~~Li~~L~~L~f-EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   69 AQEIYRSDLLYLLIRNLPKLDF-ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHHTHHHHHHHTGGGS-H-HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHhhhCCC-cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence            3456678899999999988887 78999999999988743222     22333 2 345666666667789999999999


Q ss_pred             HHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcC---chHHHHHhhcCCChHHHH
Q 009471          385 RNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVRE  459 (534)
Q Consensus       385 ~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g---~v~~Lv~ll~~~~~~v~~  459 (534)
                      +.++. +.....++....+..+++.++.++-++...|..++..+- .+......+....   ++....+++.+++--++.
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr  227 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR  227 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence            99998 555677788888999999999999999999999999854 6665555554443   677888999999999999


Q ss_pred             HHHHHHHHhcCCCcchH---HHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhcc
Q 009471          460 VAAQAISSLVTLPQNCR---EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERGR  526 (534)
Q Consensus       460 ~A~~aL~~L~~~~~~~~---~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~  526 (534)
                      .+...|..|..+..|..   .++.+...+..++.+|.+. ...++..|..++--...+   ++.+.+.|.+||
T Consensus       228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr  299 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR  299 (335)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH
T ss_pred             hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence            99999999999998876   4555666777788888876 446888887666555544   666777666554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.15  E-value=0.0014  Score=62.13  Aligned_cols=144  Identities=16%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhc
Q 009471          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSE  236 (534)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~  236 (534)
                      .+...+.+........|+..+..++..-........+ ..++.|++.+.++...+++.|..+|..+...-. ....+   
T Consensus        57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~---  132 (228)
T PF12348_consen   57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL---  132 (228)
T ss_dssp             HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH---
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH---
Confidence            4444455555566778888888887644433333332 678999999999999999999999999988765 22222   


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHh----CCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVG----HGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~----~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                        ++.+...+.+.++.++..++..+..+...-. ....+-.    ...++.+...+.++++++|..|-.+++.+..
T Consensus       133 --~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  133 --LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence              5666677788899999999999988865433 1111111    2345788888999999999999999988854

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.011  Score=63.34  Aligned_cols=236  Identities=19%  Similarity=0.154  Sum_probs=153.7

Q ss_pred             cCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHH-HhhcChhhHHHHHhCCChHHHHHHHccCChHH-HHHHHHHH
Q 009471          225 ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQ-RLSMSAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTL  302 (534)
Q Consensus       225 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~-~~~a~~aL  302 (534)
                      ....-+...++.|+...|+++.....+..+..+..+|. .+....+..     ...++.+...+......+ ...++.++
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            34446778889999999999999888888888888877 333222111     122344444443222111 25688899


Q ss_pred             HHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh-cCChHHHHHhhcC--CchHH
Q 009471          303 KNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDG--PLPQE  378 (534)
Q Consensus       303 ~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L~~--~~~~~  378 (534)
                      .||+..+ ..+..+..+-.++.+-.++...++ ..|..++.++.||..+..-..+.+++ ...++.....++.  .....
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l  645 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL  645 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence            9999855 667778877777777777766666 78999999999999876666666665 4445544444544  33444


Q ss_pred             HHHHHHHHhhc--CccHH-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCC
Q 009471          379 SAVGALRNLVG--SVSQE-VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKP  454 (534)
Q Consensus       379 ~a~~aL~~La~--~~~~~-~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~  454 (534)
                      .+++++..++.  ..... ..--..+...++.++.+.++++|......+.|+... .+....+.....++.+..+-.-..
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            55555554554  22222 333356788899999999999999999999996643 566666666666666655544333


Q ss_pred             hHHHHHHHHHHH
Q 009471          455 NSVREVAAQAIS  466 (534)
Q Consensus       455 ~~v~~~A~~aL~  466 (534)
                      ...++.+..+|.
T Consensus       726 a~~~~~~~~~l~  737 (748)
T KOG4151|consen  726 APKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhhHHH
Confidence            444555555444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.068  Score=61.25  Aligned_cols=346  Identities=15%  Similarity=0.086  Sum_probs=182.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHH-hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCchhHHH
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAV-MGRSNIAALVQLLTATSPRIREKTVTVICSLAE--SGSCENWL  233 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~--~~~~~~~l  233 (534)
                      ..+...+-+.+++.|..++.-|..+...-...+... .-.....++.++|.+.|.-+|+.|.+-++.+-+  +.+.++.+
T Consensus       821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L  900 (1702)
T KOG0915|consen  821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL  900 (1702)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence            334455567899999998888877765333221111 122445889999999998899998877776533  22344433


Q ss_pred             HhcCCHHHHHHHHccC---------CH------------H-HHHHHHHHHHHhhcC---hhhHHHHH---hC--------
Q 009471          234 VSEGVLPPLIRLVESG---------ST------------V-GKEKATISLQRLSMS---AEMARAIV---GH--------  277 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~---------~~------------~-~~~~A~~~L~~Ls~~---~~~~~~l~---~~--------  277 (534)
                           +..|+.-|..+         +.            + ..-....=|++|+.+   |+-...|.   .|        
T Consensus       901 -----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~  975 (1702)
T KOG0915|consen  901 -----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK  975 (1702)
T ss_pred             -----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence                 44444444211         00            0 011222334444432   22111111   11        


Q ss_pred             ----------------------CChHHHHHHHccCChHHHHHHHHHHHHc-cCCchHHHHHHhhCcHHHHHHHhhcCCCh
Q 009471          278 ----------------------GGVRPLIEICQTGDSVSQAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILL  334 (534)
Q Consensus       278 ----------------------g~i~~Lv~ll~~~~~~~~~~a~~aL~nL-a~~~~~~~~i~e~g~i~~L~~ll~~~~~~  334 (534)
                                            ..||.|.++=-++++.+|. +..-+||. ..++.....-.-..+++-|+.-+.+... 
T Consensus       976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kew- 1053 (1702)
T KOG0915|consen  976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEW- 1053 (1702)
T ss_pred             chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhH-
Confidence                                  1244444444455666664 55555654 3333221111114456666666666666 


Q ss_pred             hHHHHHHHHHHHHccCChHH--HHHHHhcCChHHHHHhhcC--CchHHHH---HHHHHHhhc--CccHHHHHhcCcHHHH
Q 009471          335 GSKEYAAECLQNLTASNENL--RRSVVSEGGIRSLLAYLDG--PLPQESA---VGALRNLVG--SVSQEVLISLGFFPRL  405 (534)
Q Consensus       335 ~v~~~a~~~L~~La~~~~~~--~~~i~~~g~l~~L~~~L~~--~~~~~~a---~~aL~~La~--~~~~~~l~~~~~i~~L  405 (534)
                      .+|+.++-+|..|-.+.+.-  .+.+  ......+++.++|  ..+|+.|   +.+|..+|-  .+.....-...++..+
T Consensus      1054 RVReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence            89999999999999865432  1211  1345566777777  5566654   555555554  1111111112233444


Q ss_pred             HHHH-----hcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHH-----------HHHHHHHHH-
Q 009471          406 VHVL-----KAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSV-----------REVAAQAIS-  466 (534)
Q Consensus       406 v~lL-----~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v-----------~~~A~~aL~-  466 (534)
                      +.+|     -+.-++++..+...+..|+.+  ...+..+  ...+|.|++....-.+.+           ...|...+. 
T Consensus      1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred             HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence            4433     145579999999999999965  3333333  335666666665433332           222222222 


Q ss_pred             HhcCCCcch----------HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          467 SLVTLPQNC----------REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       467 ~L~~~~~~~----------~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +.+...+-.          ..-+- +..+|.+.+++.++-+-..|-.++..+..|+..
T Consensus      1210 s~aksspmmeTi~~ci~~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1210 SAAKSSPMMETINKCINYIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred             hhhcCCcHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence            111111110          11111 246778888888775545677777777766644

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.099  Score=56.15  Aligned_cols=297  Identities=16%  Similarity=0.137  Sum_probs=164.8

Q ss_pred             hchHHHHHHHHhcCC---HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch
Q 009471          153 HGNTRELLARLQIGH---LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC  229 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~---~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~  229 (534)
                      +..+..++..+..+.   +-.+..-.+.-..++.+++.....     ..+.+-.+|++...-+...|++++..+..... 
T Consensus       204 rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~-----~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-  277 (865)
T KOG1078|consen  204 RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSP-----LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-  277 (865)
T ss_pred             HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhh-----HHHHHHHHHhchhHHHHHHHHHHHhhccccCH-
Confidence            445666666554332   222322333333344433332211     24555566766666667777777777655432 


Q ss_pred             hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHH---------HHhCC---ChHHHHHHHccCChHHH--
Q 009471          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA---------IVGHG---GVRPLIEICQTGDSVSQ--  295 (534)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~---------l~~~g---~i~~Lv~ll~~~~~~~~--  295 (534)
                       +.+..  .+..|--++.+....+|-.|.++|..++...+.+-.         +...+   ...++..+++.+.....  
T Consensus       278 -r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~r  354 (865)
T KOG1078|consen  278 -RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDR  354 (865)
T ss_pred             -hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHH
Confidence             11111  466666666666667777777777777654332211         11100   11222334444332221  


Q ss_pred             --HHHHHHHHHccCCc------hH---HHHH--HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471          296 --AAAACTLKNISAVP------EV---RQML--AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG  362 (534)
Q Consensus       296 --~~a~~aL~nLa~~~------~~---~~~i--~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (534)
                        ........+++..-      ..   +..+  -..+.+..|..+|++....+-+...+.++..+...++..++     .
T Consensus       355 Lm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~  429 (865)
T KOG1078|consen  355 LMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----R  429 (865)
T ss_pred             HHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----H
Confidence              22222222332211      00   0111  11445667777775433336677788888888776665543     4


Q ss_pred             ChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcC
Q 009471          363 GIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAG  441 (534)
Q Consensus       363 ~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g  441 (534)
                      ++..|..++.+.+...-+...|.-|... ++........+..+...+--.+..++..|..+|.++... +..+..+    
T Consensus       430 ~L~~LCefIEDce~~~i~~rILhlLG~E-gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI----  504 (865)
T KOG1078|consen  430 GLEHLCEFIEDCEFTQIAVRILHLLGKE-GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSI----  504 (865)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhcc-CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccH----
Confidence            5778888888877777777777777651 111112334566666666667788999999999999843 3333332    


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          442 CTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       442 ~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                       .-.|.+.+.+.+.++|+.|...|..+-
T Consensus       505 -~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  505 -LVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             -HHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence             556777788999999999999998885

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.97  E-value=0.12  Score=49.91  Aligned_cols=226  Identities=15%  Similarity=0.068  Sum_probs=144.4

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC-CHHHHHHHHcc--CCHHHHHHHHHHHHHhhcChhhHHHHHh-CC
Q 009471          203 QLLTATSPRIREKTVTVICSLAESGSCENWLVSEG-VLPPLIRLVES--GSTVGKEKATISLQRLSMSAEMARAIVG-HG  278 (534)
Q Consensus       203 ~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g-~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g  278 (534)
                      ++++.=++-.+--|+.++.++....+.|..+-.++ .-..++.+++.  +...+|....-+++-++.+++.++.+-. ..
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d  235 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34444456688999999999999988766665554 44567777776  3678999999999999999888855443 44


Q ss_pred             ChHHHHHHHccC-ChHHHHHHHHHHHHccC-Cc-hHHHHHHhhC-cHHHHHHHhhcCCC-hhHHHHH---HHHHH----H
Q 009471          279 GVRPLIEICQTG-DSVSQAAAACTLKNISA-VP-EVRQMLAEEG-IVSVMIKLLDCGIL-LGSKEYA---AECLQ----N  346 (534)
Q Consensus       279 ~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~-~~-~~~~~i~e~g-~i~~L~~ll~~~~~-~~v~~~a---~~~L~----~  346 (534)
                      .+..|+.+.+.. ...+-+.+++++.|+.. .| +.-..+.-.| +.++.--+.+.+.. ++.+...   -..|-    .
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            566677776643 33455778899999887 33 3333333344 44444333333221 1222111   11111    1


Q ss_pred             HccC--------------Ch---------HHHHHHHhc--CChHHHHHhhcC--Cc-hHHHHHHHHHHhhc--CccHHHH
Q 009471          347 LTAS--------------NE---------NLRRSVVSE--GGIRSLLAYLDG--PL-PQESAVGALRNLVG--SVSQEVL  396 (534)
Q Consensus       347 La~~--------------~~---------~~~~~i~~~--g~l~~L~~~L~~--~~-~~~~a~~aL~~La~--~~~~~~l  396 (534)
                      ++..              ++         .+-..+.+.  ..+..|.++++.  +. .-..|+.-+..+.+  |+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence            1110              00         011122221  246677777764  43 34567777777776  7777888


Q ss_pred             HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       397 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      ..+|+=..+++++++.+++|+-+|..++..+.
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            88999999999999999999999999987764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.94  E-value=0.0022  Score=42.34  Aligned_cols=39  Identities=21%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471          187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE  225 (534)
Q Consensus       187 ~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (534)
                      +++..+++.|+++.|++++++++++++..++++|.+++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            366778899999999999999899999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.66  Score=49.93  Aligned_cols=319  Identities=16%  Similarity=0.142  Sum_probs=189.2

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      ...+|.+.++|...+..+|+.|.-++..+-...+    .++. ++-+.+-++| ...|+..+.+|...|...  +++   
T Consensus       133 epl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~--D~E---  202 (948)
T KOG1058|consen  133 EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLIP-DAPELIESFLLTEQDPSCKRNAFLMLFTT--DPE---  202 (948)
T ss_pred             hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhcC-ChHHHHHHHHHhccCchhHHHHHHHHHhc--CHH---
Confidence            3456777778888888888888888877765422    1221 2222233333 445677777776555433  221   


Q ss_pred             HHHhcCCHHHHHHHHc---cCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          232 WLVSEGVLPPLIRLVE---SGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~---~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                           .++..+.....   +-++.++-.....++..+...+. +..+     |+.+..+|.+.++.++..|+++|.+|+.
T Consensus       203 -----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~  272 (948)
T KOG1058|consen  203 -----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSN  272 (948)
T ss_pred             -----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccC
Confidence                 11222222222   23456666677777777664332 2222     4888999999999999999999999998


Q ss_pred             CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHH
Q 009471          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALR  385 (534)
Q Consensus       308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~  385 (534)
                      .|..-+.-     ...+++++.+..+..++.-.+.-|..+...+...-     .|.+-.++++|..|  +++..++....
T Consensus       273 ~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il-----~~l~mDvLrvLss~dldvr~Ktldi~l  342 (948)
T KOG1058|consen  273 DPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHEKIL-----QGLIMDVLRVLSSPDLDVRSKTLDIAL  342 (948)
T ss_pred             CHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHH-----HHHHHHHHHHcCcccccHHHHHHHHHH
Confidence            87544433     45566776544443566666666666664333221     23455677777764  57888888888


Q ss_pred             HhhcCccHHHHHhcCcHHHHHH-HHhcC------CHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          386 NLVGSVSQEVLISLGFFPRLVH-VLKAG------SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       386 ~La~~~~~~~l~~~~~i~~Lv~-lL~~~------~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      .|+...+...++     ..|-. +.+..      +..-++.-..++..++.. ++....+     ++.|++.+.+.++..
T Consensus       343 dLvssrNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv-----V~~ll~fisD~N~~a  412 (948)
T KOG1058|consen  343 DLVSSRNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV-----VSLLLDFISDSNEAA  412 (948)
T ss_pred             hhhhhccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH-----HHHHHHHhccCCHHH
Confidence            887744433332     11211 11111      235577888888888855 7777666     899999998777654


Q ss_pred             HHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHH
Q 009471          458 REVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR  516 (534)
Q Consensus       458 ~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k  516 (534)
                      ....+.-+......-++.+..     .+..|++-+..=....+-..++|.+..-+.+-.
T Consensus       413 as~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  413 ASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            444444444443333333322     334455444432223466788888888877733

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.91  E-value=0.93  Score=49.73  Aligned_cols=144  Identities=14%  Similarity=0.142  Sum_probs=113.3

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      +..+.+++++.+.+.|.+.|+-.-..|...++.+|.-.  +   =.++.+.+=++++++.+|..|+++++.+-..+ .  
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~e-l--  124 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVKE-L--  124 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcChHH-H--
Confidence            55678888888888888988888778888887777332  2   24788888899999999999999998874332 1  


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                         -...++++.++++++++.+|..|+-++.++-.-+  ...+.+.|.+..+..++.+.+|.+...|..+|..+-..
T Consensus       125 ---~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         125 ---LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ---HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence               2235899999999999999999999999985422  23344567788888999999999999999999887653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.90  E-value=0.074  Score=59.64  Aligned_cols=262  Identities=15%  Similarity=0.151  Sum_probs=157.4

Q ss_pred             hHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----Cc
Q 009471          155 NTRELLARLQI-GHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES----GS  228 (534)
Q Consensus       155 ~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~----~~  228 (534)
                      .+.-+...++. ...+.|.+|+.-|..++..- ++.+   ++ ..+|.++.++.++..+||..|+.+|..+-..    ++
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~---LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK---LD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH---Hh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            45555555553 45678999999999887532 2221   22 5799999999999999999999988887542    22


Q ss_pred             hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcCh----hhHHHHHh------------------------CCC
Q 009471          229 CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSA----EMARAIVG------------------------HGG  279 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~----~~~~~l~~------------------------~g~  279 (534)
                      .-..++.+=++|.|-.++.+. ...++..-+..|..|+..-    +..+.+..                        +..
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            334455555688888888884 4445555555555554311    00011100                        111


Q ss_pred             h-HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhh----CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471          280 V-RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE----GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (534)
Q Consensus       280 i-~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~----g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~  354 (534)
                      | ...+.+|.++++.++..-+..|.-|+      ..+..+    =+++.|+-.|.+.+. ..|-.=...|.-++..   .
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksND~iLshLiTfLNDkDw-~LR~aFfdsI~gvsi~---V  648 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSNDVILSHLITFLNDKDW-RLRGAFFDSIVGVSIF---V  648 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccccchHHHHHHHhcCccH-HHHHHHHhhccceEEE---E
Confidence            2 22234555555556655555544333      233332    245666666666543 4444333333333321   0


Q ss_pred             HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                      -..-+++..+|.|.+-|.|  +-+...|+++|..|+.....++..-..++.....+|-.++.-++..++.+|...++.
T Consensus       649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            0111234557777787877  457889999999999843333333344566677778888999999999999988864

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.82  E-value=0.0016  Score=46.46  Aligned_cols=55  Identities=25%  Similarity=0.277  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009471          210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL  264 (534)
Q Consensus       210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L  264 (534)
                      +.+|..|+.+|++++...+....-....+++.|+.+|+++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5789999999999887776444445667899999999999999999999999875

...

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.81  E-value=0.82  Score=47.57  Aligned_cols=345  Identities=15%  Similarity=0.109  Sum_probs=192.6

Q ss_pred             HHHHHHHhcCCH---HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc----
Q 009471          157 RELLARLQIGHL---EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS----  228 (534)
Q Consensus       157 ~~Ll~~L~~~~~---~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~----  228 (534)
                      +.++..|...+.   ......+.+|..++...+-. ..+.. ..+..+-...+.+ +.+.....+.+|..+.....    
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~-~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSPQIL-ETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHH-HHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            345555544433   45667788888887644322 22211 3444444444432 45666666777777755432    


Q ss_pred             --hhHHHHhcCCHHHHHHHHccC-----C--HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHc---------
Q 009471          229 --CENWLVSEGVLPPLIRLVESG-----S--TVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQ---------  288 (534)
Q Consensus       229 --~~~~l~~~g~i~~Lv~lL~~~-----~--~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~---------  288 (534)
                        ......+..+++.+.+..-..     +  ..+...+...+..+...  .+..+.++     ..+..+..         
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCC
Confidence              223334445778887766432     2  34555555555555433  33333342     33333332         


Q ss_pred             -cC------ChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc
Q 009471          289 -TG------DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE  361 (534)
Q Consensus       289 -~~------~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~  361 (534)
                       ..      ......-...++..+-..-... ..  ...+..++.+..+......+..++.+++.+..-.+...   .-.
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP-DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLD  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccCcc-CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHH
Confidence             01      1112222334444443322111 11  23677788887655544778888888888886411110   001


Q ss_pred             CChHHHHHhh-c--CCchHHHHHHHHHHhhc----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hh-
Q 009471          362 GGIRSLLAYL-D--GPLPQESAVGALRNLVG----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE-  432 (534)
Q Consensus       362 g~l~~L~~~L-~--~~~~~~~a~~aL~~La~----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~-  432 (534)
                      ..+..+..-+ .  .+..+..++.++..++.    ...+   ....++..|+.++.+  +.+...|+..+.-+..+ ++ 
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~---~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~  303 (415)
T PF12460_consen  229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP---LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDV  303 (415)
T ss_pred             HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHh
Confidence            1233333333 1  14456666666666654    1111   123357788888866  67788888888888765 32 


Q ss_pred             ------------HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471          433 ------------MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTA  500 (534)
Q Consensus       433 ------------~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~  500 (534)
                                  +++.+.. ..+|.|++..+..+.+.+..-..+|.++..+.+..--.-.-...+|.|++-|+.+ +..+
T Consensus       304 l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v  381 (415)
T PF12460_consen  304 LNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADV  381 (415)
T ss_pred             cCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHH
Confidence                        2233322 3578888888877777888999999999977654332222235678888999776 4468


Q ss_pred             HHHHHHHHHhhchhHHHHHHH
Q 009471          501 KKYAVACLASLSPSARKLLER  521 (534)
Q Consensus       501 k~~a~~~L~~L~~~~k~~~~~  521 (534)
                      +..+..+|..+...+..+++.
T Consensus       382 ~~s~L~tL~~~l~~~~~~i~~  402 (415)
T PF12460_consen  382 LLSSLETLKMILEEAPELISE  402 (415)
T ss_pred             HHHHHHHHHHHHHcCHHHHHH
Confidence            999999999998886555443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.76  E-value=0.053  Score=59.01  Aligned_cols=260  Identities=15%  Similarity=0.162  Sum_probs=155.6

Q ss_pred             CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHH
Q 009471          249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL  327 (534)
Q Consensus       249 ~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~l  327 (534)
                      ..+....++.+++...+........+..+ .+...+..+ .+..+.++..|+++++..+... ....+ ..+++..+.++
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~~-~p~ild~L~ql  538 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLSL-QPMILDGLLQL  538 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCce-ecccc-chHHHHHHHHH
Confidence            35555557777777665542222111110 012223332 3456677888888888877432 21111 25677888888


Q ss_pred             hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh----cCCchHHHHHHHHHHhhcCccHHHHHhcCcHH
Q 009471          328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRNLVGSVSQEVLISLGFFP  403 (534)
Q Consensus       328 l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L----~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~  403 (534)
                      .....+ ++-....++|...+..++... ...+....|..+.+.    ++|.+...+-.++-.++.......-.....+|
T Consensus       539 as~~s~-evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iP  616 (1005)
T KOG2274|consen  539 ASKSSD-EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIP  616 (1005)
T ss_pred             cccccH-HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            876665 788888999999998776543 233445556555543    33655555656666665521112222345799


Q ss_pred             HHHHHHhcCC----HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHh-hcCCChHHHHHHHHHHHHhcCCCcchH
Q 009471          404 RLVHVLKAGS----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKL-LEAKPNSVREVAAQAISSLVTLPQNCR  476 (534)
Q Consensus       404 ~Lv~lL~~~~----~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~A~~aL~~L~~~~~~~~  476 (534)
                      .++..++.+.    +.....|+..|..+.++  +..-+.+... +.|.+.+. +++++.++-..+.++|..+.......-
T Consensus       617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~  695 (1005)
T KOG2274|consen  617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQL  695 (1005)
T ss_pred             HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence            9999997765    67888888888888765  3444444332 46666666 568888899999999999886543322


Q ss_pred             HHHhhCCC------HHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          477 EVKRDDKS------VPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       477 ~~~~~~~~------v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .-..++.+      +..+-+||++..++..-.+.-..+..|..+
T Consensus       696 ~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~  739 (1005)
T KOG2274|consen  696 LTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITH  739 (1005)
T ss_pred             HhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHH
Confidence            22222222      234558898875444444555555555444

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.75  E-value=0.29  Score=53.99  Aligned_cols=351  Identities=15%  Similarity=0.113  Sum_probs=190.3

Q ss_pred             hhhhchHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471          150 ATTHGNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       150 ~~~~~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (534)
                      .++...++.++..+- ..++.++..++..+.+++..-+.   .....+.++.+.++..+....+|+.|...+..+...-.
T Consensus       232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~  308 (759)
T KOG0211|consen  232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD  308 (759)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence            456666777777664 45677788888888888764442   45566889999999988889999999988888876432


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                      .-. =....+.+.++...++++..++.........+...-+.  ......-++....++++...+.+..++.-...++..
T Consensus       309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~  385 (759)
T KOG0211|consen  309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY  385 (759)
T ss_pred             Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence            211 11224588899999999999998888777777543221  111122346666667666666555444433333321


Q ss_pred             --chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc-------------------------------------
Q 009471          309 --PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-------------------------------------  349 (534)
Q Consensus       309 --~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~-------------------------------------  349 (534)
                        .+....+....+++.+..++.+... .++...+..+.++.-                                     
T Consensus       386 l~~~~~~~i~~~~ilp~~~~lv~d~~~-~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  386 LNASCYPNIPDSSILPEVQVLVLDNAL-HVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             cCcccccccchhhhhHHHHHHHhcccc-hHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence              1223333344445555555555444 444444444433321                                     


Q ss_pred             --CChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471          350 --SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (534)
Q Consensus       350 --~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (534)
                        .++......+....++.+..+-.+  -.++......+..++.... ..+....+-+.+...+.+....+++.|+..+.
T Consensus       465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~  543 (759)
T KOG0211|consen  465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-VEFFDEKLAELLRTWLPDHVYSIREAAARNLP  543 (759)
T ss_pred             HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence              111111111112222222222222  1234444444444444222 22222223333344444555678888888887


Q ss_pred             HhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHH
Q 009471          426 RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV  505 (534)
Q Consensus       426 ~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~  505 (534)
                      .++..-.  ........++.+..+...++--.|...+.++..++..-.+ +.+.+  ..++.+.++.... ...+|.+++
T Consensus       544 ~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~-ei~~~--~Llp~~~~l~~D~-vanVR~nva  617 (759)
T KOG0211|consen  544 ALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ-EITCE--DLLPVFLDLVKDP-VANVRINVA  617 (759)
T ss_pred             HHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc-HHHHH--HHhHHHHHhccCC-chhhhhhHH
Confidence            7773211  1111122366666666555566677777777655422222 22222  4567777766654 335777777


Q ss_pred             HHHHhhchh
Q 009471          506 ACLASLSPS  514 (534)
Q Consensus       506 ~~L~~L~~~  514 (534)
                      ..|..+...
T Consensus       618 k~L~~i~~~  626 (759)
T KOG0211|consen  618 KHLPKILKL  626 (759)
T ss_pred             HHHHHHHhh
Confidence            766655443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.71  E-value=0.0034  Score=44.69  Aligned_cols=55  Identities=22%  Similarity=0.069  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009471          292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL  347 (534)
Q Consensus       292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~L  347 (534)
                      |.+|..|+++|.+++........-....+++.|+.++.++++ .|+..|+.+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~-~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD-SVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH-HHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhcC
Confidence            578999999999988765433333457789999999988887 8999999999875

...

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.65  E-value=0.023  Score=49.72  Aligned_cols=137  Identities=13%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             HHHHHhcCcHHHHHHHHhcCCH------HHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHHH
Q 009471          393 QEVLISLGFFPRLVHVLKAGSL------GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQA  464 (534)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL~~~~~------~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~a  464 (534)
                      ..+++..+++..|+++++++..      .....++.++..|-.+....=...+..++...+.++..  .+..+...++..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            3567788899999999987762      55666777777766542222223344578888888873  368899999999


Q ss_pred             HHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh-----HHHHHHHHhhcccccc
Q 009471          465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS-----ARKLLERLERGRLRSF  530 (534)
Q Consensus       465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~-----~k~~~~~l~~~~~~~~  530 (534)
                      |-+++..++.....+.++=.++.|+..|+.+ +..++.+++..+-.|-..     .+++.+.+..-.+|..
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~k~~R~~  153 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDSKRKEIAETLSQKQIRQV  153 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            9999998888777777778899999999986 557999999888888766     4566666665555544

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.58  E-value=0.27  Score=45.84  Aligned_cols=154  Identities=14%  Similarity=0.105  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc-----CChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHH
Q 009471          254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIK  326 (534)
Q Consensus       254 ~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~  326 (534)
                      ...|...|..++.+++.+..|.+...--.|-.++..     +..-.|-.+++++..|..++  +.-..+...++||..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            456777888899999999999987665555555543     34567889999999999854  67778888999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHH-HH
Q 009471          327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFP-RL  405 (534)
Q Consensus       327 ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~-~L  405 (534)
                      .++.|+. ..+..|..++..|-.++...          ..             +|.....+       ..+.. ++. .+
T Consensus       176 ime~GSe-lSKtvA~fIlqKIlldD~GL----------~Y-------------iCqt~eRF-------~av~~-~L~kmv  223 (293)
T KOG3036|consen  176 IMESGSE-LSKTVATFILQKILLDDVGL----------YY-------------ICQTAERF-------SAVAL-VLGKMV  223 (293)
T ss_pred             HHhcccH-HHHHHHHHHHHHHhhccccH----------HH-------------HHHhHHHH-------HHHHH-HHHHHH
Confidence            9999997 67888888887776543322          11             11111111       11111 223 33


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009471          406 VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGE  439 (534)
Q Consensus       406 v~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~  439 (534)
                      .++.+.+++.+.+.+.++..+|+.++..+..+..
T Consensus       224 ~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~  257 (293)
T KOG3036|consen  224 FQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS  257 (293)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4455677889999999999999999888887743

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.58  E-value=0.33  Score=43.96  Aligned_cols=91  Identities=12%  Similarity=0.168  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHH
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIR  244 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~  244 (534)
                      ++..|..++.++..++..-+.    +++ ..++.+...|+++++.+|..|+.+|..|...+.  .+..     .+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~-----l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ-----LFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh-----hhHHHHH
Confidence            467888999999999875552    232 568899999999999999999999999987764  2222     3478888


Q ss_pred             HHccCCHHHHHHHHHHHHHhhcC
Q 009471          245 LVESGSTVGKEKATISLQRLSMS  267 (534)
Q Consensus       245 lL~~~~~~~~~~A~~~L~~Ls~~  267 (534)
                      ++.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999875

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.57  E-value=0.014  Score=58.86  Aligned_cols=294  Identities=16%  Similarity=0.102  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-----C-chhHHHHhcCCHHH
Q 009471          168 LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-----G-SCENWLVSEGVLPP  241 (534)
Q Consensus       168 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-----~-~~~~~l~~~g~i~~  241 (534)
                      ..+|.++...|.-++..-.-.+..++  .....+..-+...++.+++.++..+..+...     . +..+.-...+.+-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            46688888888777653221111111  1222233334556799999999998887542     1 11111111221111


Q ss_pred             H------HHHH-ccCCHHHHHHHHHHHHHhhcC-----hhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCC
Q 009471          242 L------IRLV-ESGSTVGKEKATISLQRLSMS-----AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       242 L------v~lL-~~~~~~~~~~A~~~L~~Ls~~-----~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~  308 (534)
                      +      -... ++..+..+..+|.++.++...     ++.++...     +.+..=|.+ ++.-++..|.+++.-+.-+
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~-----~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLH  421 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLC-----ITFLLGCNDSKNRLVKAAASRALGVYVLH  421 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhh-----HHHHhcccchHHHHHHHHHHhhceeEEec
Confidence            1      1111 223445677788888888542     12122211     222222332 2233456666776666666


Q ss_pred             chHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC----ChH---HHHHHHhcCChHHHHHhh-----cCCc
Q 009471          309 PEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS----NEN---LRRSVVSEGGIRSLLAYL-----DGPL  375 (534)
Q Consensus       309 ~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~----~~~---~~~~i~~~g~l~~L~~~L-----~~~~  375 (534)
                      +..+....- ..+...+...+.+..- ..|+.+.++++||+..    -+.   ....+.. -.+..+++.-     +++.
T Consensus       422 p~lr~d~~fv~~aa~~il~sl~d~~l-n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dk  499 (728)
T KOG4535|consen  422 PCLRQDVIFVADAANAILMSLEDKSL-NVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDK  499 (728)
T ss_pred             cchhhhHHHHHHHHHHHHHHhhhHhH-hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhh
Confidence            655544322 4445555555655454 6899999999999861    111   1111111 1122222221     2267


Q ss_pred             hHHHHHHHHHHhhc--C---ccHHHHHhcCcHHHHHHH-HhcCCHHHHHHHHHHHHHhcCChhHH--HHHHhcCchHHHH
Q 009471          376 PQESAVGALRNLVG--S---VSQEVLISLGFFPRLVHV-LKAGSLGAQQAAASALCRVCTSAEMK--KLVGEAGCTPLLI  447 (534)
Q Consensus       376 ~~~~a~~aL~~La~--~---~~~~~l~~~~~i~~Lv~l-L~~~~~~v~~~A~~aL~~la~~~~~~--~~i~~~g~v~~Lv  447 (534)
                      ++.+++++|+|+..  .   +........+-+..+..- .-.+...|+-+||.+++||..++...  ..=+.....+.|.
T Consensus       500 V~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~  579 (728)
T KOG4535|consen  500 VKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT  579 (728)
T ss_pred             hhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH
Confidence            89999999999976  1   111111222222222221 22345689999999999999885442  1112223578888


Q ss_pred             Hhhc-CCChHHHHHHHHHHHHhcC
Q 009471          448 KLLE-AKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       448 ~ll~-~~~~~v~~~A~~aL~~L~~  470 (534)
                      .++. ..+..+|..|+.+|..-..
T Consensus       580 ~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  580 SLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHHhccceEeehhhhhhcCCCC
Confidence            8876 6788999999999876653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.50  E-value=0.31  Score=46.00  Aligned_cols=191  Identities=21%  Similarity=0.207  Sum_probs=102.6

Q ss_pred             CChHHHHHHHcc--CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471          278 GGVRPLIEICQT--GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR  355 (534)
Q Consensus       278 g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~  355 (534)
                      ..++.|+..+.+  ..|.+|..|..+|.++. .         ...++.+-++.+++.. .+++.+..++..+-..+....
T Consensus        67 ~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~-~v~ETc~lAi~rle~~~~~~~  135 (289)
T KOG0567|consen   67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCK-EVRETCELAIKRLEWKDIIDK  135 (289)
T ss_pred             hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCcc-ccchHHHHHHHHHHHhhcccc
Confidence            345666666554  34556666666666554 2         2223334444433333 455555555555443111000


Q ss_pred             -------HHH-----HhcCChHHHHHhhcC---Cc-hHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHH
Q 009471          356 -------RSV-----VSEGGIRSLLAYLDG---PL-PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQA  419 (534)
Q Consensus       356 -------~~i-----~~~g~l~~L~~~L~~---~~-~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~  419 (534)
                             ..+     ...+.+..+-..+-+   +. -+..|...|+|+-..         ..+..|.+-+..++.-.|..
T Consensus       136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E---------eaI~al~~~l~~~SalfrhE  206 (289)
T KOG0567|consen  136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE---------EAINALIDGLADDSALFRHE  206 (289)
T ss_pred             ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH---------HHHHHHHHhcccchHHHHHH
Confidence                   000     011223344443322   11 245566666665432         12455556566667788888


Q ss_pred             HHHHHHHhcCChhHHHHHHhcCchHHHHHhhc--CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCc
Q 009471          420 AASALCRVCTSAEMKKLVGEAGCTPLLIKLLE--AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ  497 (534)
Q Consensus       420 A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~--~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~  497 (534)
                      ++.+++.|-..          -.+|.|.+.|.  ..++.+|..|++||..++           ++..++.|.+.+... .
T Consensus       207 vAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa-----------~e~~~~vL~e~~~D~-~  264 (289)
T KOG0567|consen  207 VAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA-----------DEDCVEVLKEYLGDE-E  264 (289)
T ss_pred             HHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc-----------CHHHHHHHHHHcCCc-H
Confidence            88888887532          34677777765  457888888888888884           345566666666654 3


Q ss_pred             hhHHHHHHHHHHh
Q 009471          498 NTAKKYAVACLAS  510 (534)
Q Consensus       498 ~~~k~~a~~~L~~  510 (534)
                      ..+++.+..+|-.
T Consensus       265 ~vv~esc~valdm  277 (289)
T KOG0567|consen  265 RVVRESCEVALDM  277 (289)
T ss_pred             HHHHHHHHHHHHH
Confidence            3566666665543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.48  E-value=0.083  Score=52.42  Aligned_cols=183  Identities=20%  Similarity=0.214  Sum_probs=109.6

Q ss_pred             HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC--ChHHHHHH
Q 009471          283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS--NENLRRSV  358 (534)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~--~~~~~~~i  358 (534)
                      .+..+.+.....|..++..+.++....-....+.+  .-++..+.+.++.+.. +-+..|+.++.-++..  .......+
T Consensus        48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            34445556677888888888877654322222222  3356777788888876 4566677776666653  22223344


Q ss_pred             HhcCChHHHHHhhcC----CchHHHHHHHHHHhhc--CccHHHHHh-cCcHHHHHH--HHhc----------CCHHHHHH
Q 009471          359 VSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLIS-LGFFPRLVH--VLKA----------GSLGAQQA  419 (534)
Q Consensus       359 ~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~--~~~~~~l~~-~~~i~~Lv~--lL~~----------~~~~v~~~  419 (534)
                      ++ ...+.|.+++.+    +..|..|+.+|+-++.  ......+.+ ...+..++.  ..+.          +++.+...
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a  205 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA  205 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence            43 346778887765    3456677777777766  222222211 122332222  1221          12467777


Q ss_pred             HHHHHHHhcCC-hh--HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          420 AASALCRVCTS-AE--MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       420 A~~aL~~la~~-~~--~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      |+.+.+-|... +.  ....+  ...+|.|..+|.+.+.++|..|.++|..|.
T Consensus       206 AL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  206 ALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            77766666543 32  33333  345999999999999999999999999885

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.40  E-value=0.27  Score=46.39  Aligned_cols=103  Identities=24%  Similarity=0.295  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh--c
Q 009471          336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK--A  411 (534)
Q Consensus       336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~--~  411 (534)
                      -++.+...|+|+-.  +..         +..+.+-+..  .-.|..+..+++.|-++         ..++.|.+.|.  .
T Consensus       172 ~Ry~amF~LRn~g~--Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s~---------~ai~~L~k~L~d~~  231 (289)
T KOG0567|consen  172 ERYRAMFYLRNIGT--EEA---------INALIDGLADDSALFRHEVAFVFGQLQSP---------AAIPSLIKVLLDET  231 (289)
T ss_pred             HHHhhhhHhhccCc--HHH---------HHHHHHhcccchHHHHHHHHHHHhhccch---------hhhHHHHHHHHhhh
Confidence            36677777777653  211         3334444433  33577888888887652         35788888775  3


Q ss_pred             CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471          412 GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (534)
Q Consensus       412 ~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L  468 (534)
                      .++.|+..|+.+|+.++..          .+++.|.+++.++.+-+++.+..+|-.+
T Consensus       232 E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  232 EHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             cchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            4689999999999999853          4677888888888888888777776544

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.40  E-value=0.05  Score=51.41  Aligned_cols=141  Identities=18%  Similarity=0.251  Sum_probs=102.1

Q ss_pred             HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccC
Q 009471          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG  249 (534)
Q Consensus       177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~  249 (534)
                      +|.+....+|+.+..+++....-.|..+|+..+     ..+|-.++.+++.+...++  .-..+.+.+++|..++.++.+
T Consensus        72 aLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G  151 (262)
T PF04078_consen   72 ALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG  151 (262)
T ss_dssp             HHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS
T ss_pred             HHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc
Confidence            444444457788899999888777777776643     5788999999999988654  667788899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcChhhHHHHHh--------CCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471          250 STVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (534)
Q Consensus       250 ~~~~~~~A~~~L~~Ls~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (534)
                      +.-.+..|.-++..+-.++..-..+++        ..++..++ .+...+++...++..++-..|+.++..+..+..
T Consensus       152 selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  152 SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             -HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999999998877765544432        11222233 334567888889999999999999988887754

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.042  Score=59.10  Aligned_cols=209  Identities=13%  Similarity=0.099  Sum_probs=147.1

Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHH-HHccCChHHHHHHHhcCChHHHHHhhcCCc---hHHHHHHHHH
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ-NLTASNENLRRSVVSEGGIRSLLAYLDGPL---PQESAVGALR  385 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~-~La~~~~~~~~~i~~~g~l~~L~~~L~~~~---~~~~a~~aL~  385 (534)
                      .-+...+..|+...|..+...... ..+.....+|. .+.......      ..+++.+...+++..   ---.++.++.
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q~e-~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQFE-EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHhch-HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            455566778999999999877776 66777777776 333321111      122334444443321   1246788999


Q ss_pred             Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh-HHHHHHh-cCchHHHHHhhcCCChHHHHHH
Q 009471          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGE-AGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~-~~~~i~~-~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      ||++  ...++.+...-.++.+-.++-..++..|..++..+.||.-++. +.+.+++ ....+.....+....+....++
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            9998  4556678777778888888888899999999999999997754 4455555 3467776666777777777788


Q ss_pred             HHHHHHhcCCCcchHH-HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHHhhcc
Q 009471          462 AQAISSLVTLPQNCRE-VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGR  526 (534)
Q Consensus       462 ~~aL~~L~~~~~~~~~-~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l~~~~  526 (534)
                      +.++..++....|+.. ..........++.++.+. +..++...+....|+....+++.+.+...-
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~  712 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETE  712 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccch
Confidence            8888878777777665 444445667888888776 447889999999999988888888776543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.31  E-value=0.26  Score=55.56  Aligned_cols=294  Identities=14%  Similarity=0.106  Sum_probs=164.3

Q ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-----hhhH
Q 009471          198 IAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-----AEMA  271 (534)
Q Consensus       198 v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-----~~~~  271 (534)
                      +..+...+++= ..+.+..|+..|..++..-.....+  ..++|.++.++.+....+|..|..+|..+-..     +.+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence            55555555542 3678899999999998754321221  24699999999999999999999998887432     1222


Q ss_pred             HHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471          272 RAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~  350 (534)
                      . +.-.=.+|.|-.++.+ ....+|..-+..|..|+..   ...+.+.+--.....++.+.+. +       ...+ ...
T Consensus       502 n-iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t---A~rFle~~q~~~~~g~~n~~ns-e-------t~~~-~~~  568 (1431)
T KOG1240|consen  502 N-IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT---AYRFLELTQELRQAGMLNDPNS-E-------TAPE-QNY  568 (1431)
T ss_pred             h-hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH---HHHHHHHHHHHHhcccccCccc-c-------cccc-ccc
Confidence            2 2223345677677766 3445565556666666542   1112221111111112222222 1       0000 000


Q ss_pred             ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          351 NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       351 ~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      +.. .+. ...++-+....++.+  +-++..-+..|.-||.--.++ =.+.-+++.|+.+|++.+..++..-...|.-++
T Consensus       569 ~~~-~~~-L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~-ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs  645 (1431)
T KOG1240|consen  569 NTE-LQA-LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE-KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS  645 (1431)
T ss_pred             chH-HHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc-ccccchHHHHHHHhcCccHHHHHHHHhhccceE
Confidence            111 111 112222334445544  345666666677777510000 012335888999999998887766665555444


Q ss_pred             CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHH
Q 009471          429 TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (534)
Q Consensus       429 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L  508 (534)
                      ..-.-+  -.++..+|.|.+-+.+..+-|...|+++|..|+...--++..+.  +.+.....+|-. |+.=+|..++..+
T Consensus       646 i~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~h-PN~WIR~~~~~iI  720 (1431)
T KOG1240|consen  646 IFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCH-PNLWIRRAVLGII  720 (1431)
T ss_pred             EEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeC-chHHHHHHHHHHH
Confidence            321111  01234588888889988899999999999999855544444443  233333344433 2445888888888


Q ss_pred             Hhhchh
Q 009471          509 ASLSPS  514 (534)
Q Consensus       509 ~~L~~~  514 (534)
                      ...+..
T Consensus       721 ~~~~~~  726 (1431)
T KOG1240|consen  721 AAIARQ  726 (1431)
T ss_pred             HHHHhh
Confidence            887765

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.29  E-value=0.023  Score=45.87  Aligned_cols=66  Identities=15%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471          295 QAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASNENLRRSVVS  360 (534)
Q Consensus       295 ~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (534)
                      +.....+|.||+. ++.++..+.+.|+++.++.... +...+-+++.|+.++.|++.+++.+++.+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            5667889999998 4589999999999999998874 3333478999999999999999999876654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.18  E-value=0.47  Score=48.45  Aligned_cols=125  Identities=9%  Similarity=0.119  Sum_probs=92.4

Q ss_pred             cCCHHHHHHHHccC---CHHHHHHHHHHHHHhhcChhhHH-HHHhCCChHHHHHHHc-cC---ChHHHHHHHHHHHHccC
Q 009471          236 EGVLPPLIRLVESG---STVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQ-TG---DSVSQAAAACTLKNISA  307 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~~~~~~-~l~~~g~i~~Lv~ll~-~~---~~~~~~~a~~aL~nLa~  307 (534)
                      ...+..|..+++..   .+.+-..|+.++..+-.+++... .+.+.|.++.+++.+. .+   +.++....-.+|..+|-
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            45566677777764   55677788899999888877655 5667899999998887 43   55666777788888999


Q ss_pred             CchHHHHHHhhCcHHHHHHHhhcCCCh------hHHHHHHHHHHHHccCChHHHHHHHh
Q 009471          308 VPEVRQMLAEEGIVSVMIKLLDCGILL------GSKEYAAECLQNLTASNENLRRSVVS  360 (534)
Q Consensus       308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~------~v~~~a~~~L~~La~~~~~~~~~i~~  360 (534)
                      +....+.+.+.+.++.+++++.+....      +.-...-..+-.|..+.+..|..+++
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999999999999999765421      22333445566677788888776654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.18  E-value=0.25  Score=54.05  Aligned_cols=169  Identities=12%  Similarity=0.137  Sum_probs=125.3

Q ss_pred             HhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHH
Q 009471          163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL  242 (534)
Q Consensus       163 L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L  242 (534)
                      +.+++...|.+|++.+..-....+.. .     -..+.+++...+.|.+++...=.-|...+...+....+    .+..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dm-s-----sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDM-S-----SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCCh-H-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            56667788889998766654433321 1     22455666666778899988888888888877633332    37778


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHH
Q 009471          243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS  322 (534)
Q Consensus       243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~  322 (534)
                      .+=++++++.+|..|.+++..+-.. +-...+     ++++.+++.++++.+|..|+-++.++-..+  .....+.|.+.
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~~-el~~~~-----~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~  169 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRVK-ELLGNI-----IDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLID  169 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcChH-HHHHHH-----HHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHH
Confidence            8888899999999999999887542 222222     488999999999999999999999987532  23445678888


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471          323 VMIKLLDCGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       323 ~L~~ll~~~~~~~v~~~a~~~L~~La~~  350 (534)
                      .+..++.+.++ .+..+|+.+|..+...
T Consensus       170 ~l~~l~~D~dP-~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         170 ILKELVADSDP-IVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence            88888888887 8999999999998763

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.16  E-value=0.088  Score=46.09  Aligned_cols=119  Identities=15%  Similarity=0.147  Sum_probs=92.4

Q ss_pred             HHHHHhCCChHHHHHHHccCCh------HHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC-ChhHHHHHHHH
Q 009471          271 ARAIVGHGGVRPLIEICQTGDS------VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI-LLGSKEYAAEC  343 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~~~~------~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~-~~~v~~~a~~~  343 (534)
                      +..|...||+..|++++.+++.      .....++.++..|....-..=...+...|..++..+.... +..+...|+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4568889999999999998763      5667888888888775433334455667778888886443 33789999999


Q ss_pred             HHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          344 LQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       344 L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      |-++...++.....+.++=.++.|+..|++  ++++..++..+-.|-.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999888878888888889999999975  5678888887777765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.16  E-value=0.94  Score=47.30  Aligned_cols=250  Identities=16%  Similarity=0.126  Sum_probs=119.2

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--------HHHHh-
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE--------NWLVS-  235 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--------~~l~~-  235 (534)
                      +.-.-+..++++.+..++.++-.  ..+++ ..|..|-.+|+++....|-.|+++|..|+...+.+        +.++. 
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd  351 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISD  351 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhc
Confidence            33456688888888888765411  12222 45777888889999999999999999999865421        11111 


Q ss_pred             cC---CHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--
Q 009471          236 EG---VLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--  309 (534)
Q Consensus       236 ~g---~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--  309 (534)
                      .+   ..-.+..+|+.+..+....-...+-++-.+ +++-..    -+|.++-.++- .-|.-+..-+..|.+.-.++  
T Consensus       352 ~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKi----I~ida~rsLsl-~Fp~k~~s~l~FL~~~L~~eGg  426 (898)
T COG5240         352 ENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKI----IAIDALRSLSL-LFPSKKLSYLDFLGSSLLQEGG  426 (898)
T ss_pred             ccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceE----EeHHHHHHHHh-hCcHHHHHHHHHHHHHHHhccc
Confidence            11   112233344444333222222222221111 000000    00111111111 01112222222222221111  


Q ss_pred             -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH--H----hc--------CChHHHHH--hhc
Q 009471          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV--V----SE--------GGIRSLLA--YLD  372 (534)
Q Consensus       310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i--~----~~--------g~l~~L~~--~L~  372 (534)
                       +.++.+     +..+.+.++..+  +.++.|++.|+..-.+.+..+-.+  .    ++        ..+..+.+  +|+
T Consensus       427 ~eFK~~~-----Vdaisd~~~~~p--~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLE  499 (898)
T COG5240         427 LEFKKYM-----VDAISDAMENDP--DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILE  499 (898)
T ss_pred             chHHHHH-----HHHHHHHHhhCc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHh
Confidence             233332     223333333222  344444444444433222211100  0    11        11333333  245


Q ss_pred             CCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          373 GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       373 ~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                      +.-+|..|+.+|..++.+.+ +.+....+...|-+.+++.+.+++..|...+.++-..
T Consensus       500 N~ivRsaAv~aLskf~ln~~-d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         500 NNIVRSAAVQALSKFALNIS-DVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             hhHHHHHHHHHHHHhccCcc-ccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence            66788999999988886311 1122233456677788999999999999999998643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.07  E-value=0.1  Score=56.59  Aligned_cols=343  Identities=13%  Similarity=0.128  Sum_probs=178.8

Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH------HHHhcCCHH
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN------WLVSEGVLP  240 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~------~l~~~g~i~  240 (534)
                      +....-++++.+..|+.++ +....+++.|||..|+..=.-+  +.-.-.-.+|..++.....-+      ..+-..++.
T Consensus       366 d~~l~~~~~k~~~~l~~h~-kfa~~fv~~~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~  442 (1516)
T KOG1832|consen  366 DSPLLPDVMKLICALAAHR-KFAAMFVERRGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVK  442 (1516)
T ss_pred             cccccHHHHHHHHHHHHhh-HHHHHHHHhhhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHH
Confidence            3333456777777777654 4556788889998887653221  111122244555554443211      222335666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-------------------ChHHHHHHHHH
Q 009471          241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-------------------DSVSQAAAACT  301 (534)
Q Consensus       241 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-------------------~~~~~~~a~~a  301 (534)
                      .-+.+|+......+..++-.+..-......-..|-.+.+++.|+.++++-                   +...-.+.|.+
T Consensus       443 ~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~a  522 (1516)
T KOG1832|consen  443 LAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFA  522 (1516)
T ss_pred             HHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHH
Confidence            67778877665555555443333222122233444577788888877641                   11223466777


Q ss_pred             HHHccC------CchHHHHHHhhCcHHHHHHHhhcCCCh-----hHHHHHHHHHHHHccCCh-------HHHHHHHhcCC
Q 009471          302 LKNISA------VPEVRQMLAEEGIVSVMIKLLDCGILL-----GSKEYAAECLQNLTASNE-------NLRRSVVSEGG  363 (534)
Q Consensus       302 L~nLa~------~~~~~~~i~e~g~i~~L~~ll~~~~~~-----~v~~~a~~~L~~La~~~~-------~~~~~i~~~g~  363 (534)
                      |+.--.      .+.+++.-+..+.....++-+..+..+     ...+..++-+..+....+       .-.+-+.+.++
T Consensus       523 lR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~  602 (1516)
T KOG1832|consen  523 LRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSG  602 (1516)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHH
Confidence            765432      223344444555555555544333211     222333222222222111       11133456778


Q ss_pred             hHHHHHhhcCC----------chHHHHHHHHHHhhc-CccHHHHHh--------cCcHHHHHHHHh----cCCHHHHHHH
Q 009471          364 IRSLLAYLDGP----------LPQESAVGALRNLVG-SVSQEVLIS--------LGFFPRLVHVLK----AGSLGAQQAA  420 (534)
Q Consensus       364 l~~L~~~L~~~----------~~~~~a~~aL~~La~-~~~~~~l~~--------~~~i~~Lv~lL~----~~~~~v~~~A  420 (534)
                      +..++++..-+          +....|+++|.-+.. +..+..+..        ..++..++..-.    -.+|++++.|
T Consensus       603 v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~A  682 (1516)
T KOG1832|consen  603 VVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPA  682 (1516)
T ss_pred             HHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHH
Confidence            88888876431          233445555554444 555444432        123444443332    2368999999


Q ss_pred             HHHHHHhcCC-hhHHHHHHhc-C---chHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCC
Q 009471          421 ASALCRVCTS-AEMKKLVGEA-G---CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS  495 (534)
Q Consensus       421 ~~aL~~la~~-~~~~~~i~~~-g---~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~  495 (534)
                      +.+|-|+.+. ++++...+.. |   +-+...---..++.    .....|..+       ...++..+++..|+.||+-.
T Consensus       683 L~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~----~le~~l~~m-------w~~Vr~ndGIkiLl~Ll~~k  751 (1516)
T KOG1832|consen  683 LNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSA----KLEQVLRQM-------WEAVRGNDGIKILLKLLQYK  751 (1516)
T ss_pred             HhhhheeecCCCCcchhhhhhccccCCCccccccCCCchH----HHHHHHHHH-------HHHHhcCccHHHHHHHHhcc
Confidence            9999999887 4666654221 1   11111000011111    112233333       34566778999999999854


Q ss_pred             -C---chhHHHHHHHHHHhhchh--HHHHHHHHh
Q 009471          496 -P---QNTAKKYAVACLASLSPS--ARKLLERLE  523 (534)
Q Consensus       496 -~---~~~~k~~a~~~L~~L~~~--~k~~~~~l~  523 (534)
                       |   ...++..|..+|.-|+.+  .+.++.||.
T Consensus       752 ~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp  785 (1516)
T KOG1832|consen  752 NPPTTADCIRALACRVLLGLARDDTVRQILTKLP  785 (1516)
T ss_pred             CCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence             2   234899999999999988  445555443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.04  E-value=0.034  Score=44.73  Aligned_cols=89  Identities=15%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChH
Q 009471          214 EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV  293 (534)
Q Consensus       214 ~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~  293 (534)
                      ..++.+|...+..-+..-.-.-..++++++..+.+.+..+|+.|+++|.+++..-...-...-......|.+++.+.++.
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~   83 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN   83 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence            33444555554432211111223469999999999999999999999999986432211111145568888889998988


Q ss_pred             HHHHHHHHHH
Q 009471          294 SQAAAACTLK  303 (534)
Q Consensus       294 ~~~~a~~aL~  303 (534)
                      +|..| ..|-
T Consensus        84 Vr~~a-~~Ld   92 (97)
T PF12755_consen   84 VRSAA-ELLD   92 (97)
T ss_pred             HHHHH-HHHH
Confidence            88655 4443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.04  E-value=1.6  Score=48.73  Aligned_cols=236  Identities=15%  Similarity=0.182  Sum_probs=141.0

Q ss_pred             HhcCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHc----cCC----HHHHHHHH
Q 009471          192 VMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE----SGS----TVGKEKAT  258 (534)
Q Consensus       192 i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~----~~~----~~~~~~A~  258 (534)
                      +.+.||+..++.++.+-     ..+.-...+..|...+.-..+|+.+.+.|+++.|+..+.    ...    +.+.+...
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            34569999999998762     345666777888888888889999999999999999885    223    55666666


Q ss_pred             HHHHHhhcChhh--H---HHHHhCCC--------hHHHHHHHcc----CChHHHHHHHHHHHHccCCchHH-HHHHhhCc
Q 009471          259 ISLQRLSMSAEM--A---RAIVGHGG--------VRPLIEICQT----GDSVSQAAAACTLKNISAVPEVR-QMLAEEGI  320 (534)
Q Consensus       259 ~~L~~Ls~~~~~--~---~~l~~~g~--------i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~~~~~~-~~i~e~g~  320 (534)
                      .++..+......  .   .......+        +..|++.+.+    .++.+....+++|-+|+.+.+.. +.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            666655432111  1   11112222        5566666654    36788889999999999976433 333331  


Q ss_pred             HHHHHHHhhc--CCChhHHHHHHHHHHHHccC------ChHHHHHHHhcCChHHHHHhhcC--Cc---------------
Q 009471          321 VSVMIKLLDC--GILLGSKEYAAECLQNLTAS------NENLRRSVVSEGGIRSLLAYLDG--PL---------------  375 (534)
Q Consensus       321 i~~L~~ll~~--~~~~~v~~~a~~~L~~La~~------~~~~~~~i~~~g~l~~L~~~L~~--~~---------------  375 (534)
                      +...+++=+-  ....+- ..-+.++..++.+      ....++.+++.|.+...+++|..  |.               
T Consensus       271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence            2222222111  111011 2336667776652      24688999999999999998843  32               


Q ss_pred             -hHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCh
Q 009471          376 -PQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAG--SLGAQQAAASALCRVCTSA  431 (534)
Q Consensus       376 -~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~~  431 (534)
                       ....++..|.-|+. ....+.++..+++ ++++-|..-  +..+=..|=..|-.++.++
T Consensus       350 psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             CcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence             13567888888887 3334445556666 555555322  2233333333444444443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.95  E-value=0.057  Score=49.33  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=84.0

Q ss_pred             cCCHHHHHHHHHHHHHhhcChhhHHHHHhC--C--------------ChHHHHHHHcc------CChHHHHHHHHHHHHc
Q 009471          248 SGSTVGKEKATISLQRLSMSAEMARAIVGH--G--------------GVRPLIEICQT------GDSVSQAAAACTLKNI  305 (534)
Q Consensus       248 ~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~--g--------------~i~~Lv~ll~~------~~~~~~~~a~~aL~nL  305 (534)
                      +........++-.|.||+..++.+..+.+.  .              .+..|+..+..      ....-..+.+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            334446677889999999988887765542  2              35666766554      2233457889999999


Q ss_pred             cCCchHHHHHHh--hCc--HHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc---CChHHHHHhh
Q 009471          306 SAVPEVRQMLAE--EGI--VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE---GGIRSLLAYL  371 (534)
Q Consensus       306 a~~~~~~~~i~e--~g~--i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~---g~l~~L~~~L  371 (534)
                      +..++.|+.+.+  .+.  +..|+..+++.+. .-|.-++.+|.|+|.+.+.. ..++..   +.++.|+--|
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~-iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV-IRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence            999999999987  344  6777777777754 55778999999999865544 344432   3444444433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.94  E-value=0.092  Score=46.51  Aligned_cols=143  Identities=22%  Similarity=0.247  Sum_probs=93.2

Q ss_pred             HHHHHHHhhc-CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc--CccH-H
Q 009471          321 VSVMIKLLDC-GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQ-E  394 (534)
Q Consensus       321 i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~~~~-~  394 (534)
                      +..++..+.. ..+.+++..+.-++..+-   +..++. +.+-.-+.+-..+..  .+....++.++..+-.  ++.. .
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            3445555543 222378998888888873   222222 221112222223333  4567777777777765  3333 3


Q ss_pred             HHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChH-HHHHHHHHHHHh
Q 009471          395 VLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNS-VREVAAQAISSL  468 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~-v~~~A~~aL~~L  468 (534)
                      .+...|+++.++.++.  ..+..++..++.+|..=|.+...|..+.+. +++.|.++++ +++.. ++..|+-+|+.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            4457899999999998  778899999999888877777777777665 5999999995 55565 788988888753

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.92  E-value=0.062  Score=43.24  Aligned_cols=92  Identities=13%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC
Q 009471          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS  250 (534)
Q Consensus       171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~  250 (534)
                      |..++..|...+..-+.......+ ..+++++..+.+++..+|..|+++|.+++......-...-..+.+.|.+++.+.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            344555565554433333333332 6799999999999999999999999999865432111122457888899999999


Q ss_pred             HHHHHHHHHHHHHh
Q 009471          251 TVGKEKATISLQRL  264 (534)
Q Consensus       251 ~~~~~~A~~~L~~L  264 (534)
                      +.++..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            8887655 555554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.96  Score=48.64  Aligned_cols=161  Identities=19%  Similarity=0.113  Sum_probs=95.6

Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh-hcC--CchHHHHHHHHHHhhcCccHHHHHh
Q 009471          322 SVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGSVSQEVLIS  398 (534)
Q Consensus       322 ~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~~~~~~~l~~  398 (534)
                      +.+-+++.+.++ -.|......+.--=.+..       +.+++..|+.+ ..+  ++++..|+-+|+-++..       +
T Consensus       522 ~lI~el~~dkdp-ilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~-------d  586 (929)
T KOG2062|consen  522 PLIKELLRDKDP-ILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-------D  586 (929)
T ss_pred             HHHHHHhcCCch-hhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEec-------C
Confidence            334445555554 456555444332111111       12446777776 344  78999999999999873       1


Q ss_pred             cCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchH
Q 009471          399 LGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCR  476 (534)
Q Consensus       399 ~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~  476 (534)
                      ..-.+..+.+| .+.++.|+.-|+.+|+-.|.....+..      +..|-.+.+++..-||.-|+.++.-+... .+...
T Consensus       587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~  660 (929)
T KOG2062|consen  587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC  660 (929)
T ss_pred             hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC
Confidence            22457777777 467899999999999988866444443      34444555677777999999999887732 22111


Q ss_pred             HHHhhCCCHHHHHhhcCCCCchh-HHHHHH
Q 009471          477 EVKRDDKSVPNLVQLLDPSPQNT-AKKYAV  505 (534)
Q Consensus       477 ~~~~~~~~v~~Lv~lL~~~~~~~-~k~~a~  505 (534)
                      .-+.  +....+.+.+....+.. +|..|+
T Consensus       661 pkv~--~frk~l~kvI~dKhEd~~aK~GAi  688 (929)
T KOG2062|consen  661 PKVN--GFRKQLEKVINDKHEDGMAKFGAI  688 (929)
T ss_pred             chHH--HHHHHHHHHhhhhhhHHHHHHHHH
Confidence            1111  23445666665553333 444443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.79  E-value=0.24  Score=49.46  Aligned_cols=235  Identities=15%  Similarity=0.177  Sum_probs=150.4

Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH-----HHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHH
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV-----RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECL  344 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~-----~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L  344 (534)
                      .+...+.+..|+..+..-+-+.+..++.+..++-... +.     ...+.+  ..++..|+.--+  .+ ++-..+-..|
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~-dial~~g~ml  147 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NP-DIALNCGDML  147 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--ST-TTHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--Cc-cccchHHHHH
Confidence            4555677888999999889999999999998887743 22     222222  223333332222  33 6777888888


Q ss_pred             HHHccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHh---cCcHHHHHHHHhcCCHHHH
Q 009471          345 QNLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLIS---LGFFPRLVHVLKAGSLGAQ  417 (534)
Q Consensus       345 ~~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~---~~~i~~Lv~lL~~~~~~v~  417 (534)
                      +.+.. .+...+.+.....+..+.++++.+  ++...|..++..+-. . ......+.   ..++.....+|.+++.-++
T Consensus       148 Rec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  148 RECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            88887 566666788888888899988764  456667777777554 2 22233333   3457788889999999999


Q ss_pred             HHHHHHHHHhcCChhHH----HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh-CCCHHHHHhhc
Q 009471          418 QAAASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD-DKSVPNLVQLL  492 (534)
Q Consensus       418 ~~A~~aL~~la~~~~~~----~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~-~~~v~~Lv~lL  492 (534)
                      +.++..|+.+-.++.+.    +++.+..-+..++.++.+++..+|..|-.+.-.++.+|...+.+..- ..+=..|+..|
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl  306 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL  306 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999998764443    44445567899999999999999999999999888776544433220 02334555555


Q ss_pred             CC----C-Cc---hhHHHHHHHHHHhh
Q 009471          493 DP----S-PQ---NTAKKYAVACLASL  511 (534)
Q Consensus       493 ~~----~-~~---~~~k~~a~~~L~~L  511 (534)
                      ..    . ++   .+.|.+-+.-+..|
T Consensus       307 ~~f~~~~~~D~qf~~EK~~li~~i~~L  333 (335)
T PF08569_consen  307 KDFHTDRTDDEQFEDEKAYLIKQIESL  333 (335)
T ss_dssp             HTTTTT--S-CHHHHHHHHHHHHHHT-
T ss_pred             HhCCCCCCccccHHHHHHHHHHHHHhC
Confidence            32    2 11   13566666655544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.69  E-value=0.52  Score=44.71  Aligned_cols=180  Identities=16%  Similarity=0.139  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHHh-cCChHHHHHhh-------cCCc-------hHHHHHHHHHHhhc-CccHHHHHh
Q 009471          335 GSKEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL-------DGPL-------PQESAVGALRNLVG-SVSQEVLIS  398 (534)
Q Consensus       335 ~v~~~a~~~L~~La~~~~~~~~~i~~-~g~l~~L~~~L-------~~~~-------~~~~a~~aL~~La~-~~~~~~l~~  398 (534)
                      +.++.|+.-|..--...++..-.+.+ .|.+..|++=+       ..|.       -..+|+..+..++. ++.+..++.
T Consensus        10 ~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~   89 (262)
T PF04078_consen   10 ETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK   89 (262)
T ss_dssp             HHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH
T ss_pred             chHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            56777777766665555555544553 45566665532       2222       13578888889998 888999999


Q ss_pred             cCcHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ..+.-.|..+|+..+     ..++-.+.++++.+.+.  ++....+.+.+.+|...+.++.+++-.+..|..++..+..+
T Consensus        90 a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d  169 (262)
T PF04078_consen   90 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD  169 (262)
T ss_dssp             TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS
T ss_pred             cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc
Confidence            988777777776543     47888999999999974  78888999999999999999999999999999999988876


Q ss_pred             CcchH-------HHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          472 PQNCR-------EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       472 ~~~~~-------~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ..+..       .|..=...+..++.-+..+++...-++.+.|-..|+.+
T Consensus       170 d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  170 DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            54443       33332234555555454455556888999999999988

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.62  E-value=0.95  Score=46.27  Aligned_cols=130  Identities=20%  Similarity=0.235  Sum_probs=98.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcCh---HhHHHHhcCCcHHHHHHHhcCCC-------HHHHHHHHHHHHHhhcC
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSNIAALVQLLTATS-------PRIREKTVTVICSLAES  226 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~---~~~~~i~~~g~v~~Lv~lL~~~~-------~~v~~~A~~~L~~La~~  226 (534)
                      .++...+...+.+.|..|+--...+.+.++   .+++.+.+.-|.+.+=+++.+.+       .-.+..++.+|.-+|..
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            346666677778888888888888887655   45667788778888888887632       33467778889999988


Q ss_pred             Cc--hhHHHHhcCCHHHHHHHHccC-CHH------HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc
Q 009471          227 GS--CENWLVSEGVLPPLIRLVESG-STV------GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ  288 (534)
Q Consensus       227 ~~--~~~~l~~~g~i~~Lv~lL~~~-~~~------~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~  288 (534)
                      ++  ....+++  .||.|..++..+ +++      +.+.+..+|..++..+...+.+...|+++.+..+-.
T Consensus        94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence            87  4444443  489999999764 333      677889999999999888999999999999986643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.58  E-value=0.68  Score=49.11  Aligned_cols=122  Identities=17%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLI  243 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv  243 (534)
                      .|+...|.-|+.-+....+.-|+..     +.++..++.|+.+.+..||..|+..|..+|.+.+ ....+     ...|+
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~  102 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV  102 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence            4788889999999999988877553     3568999999999999999999999999999753 44444     88999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc---cCChHHHHHHHHHHH
Q 009471          244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLK  303 (534)
Q Consensus       244 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~  303 (534)
                      ++|.++++.-...+-.+|..|-..+ .+..+      ..+...+.   .++..+|..+...|.
T Consensus       103 QlL~tdd~~E~~~v~~sL~~ll~~d-~k~tL------~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  103 QLLQTDDPVELDAVKNSLMSLLKQD-PKGTL------TGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHTT---HHHHHHHHHHHHHHHHH--HHHHH------HHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcC-cHHHH------HHHHHHHHhcccCchHHHHHHHHHHH
Confidence            9999988877777777777765422 22222      44444444   567788888877664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.56  E-value=0.042  Score=45.61  Aligned_cols=74  Identities=11%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             hhchHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471          152 THGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE  225 (534)
Q Consensus       152 ~~~~i~~Ll~~L-~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (534)
                      ....++.|+..| .+.|+....-||.-|..++..-|..+..+-+.|+-..+.+++.++|++|+..|+.++..+-.
T Consensus        41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            345688889988 45577778889999999999888887777777889999999999999999999999987743

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.56  E-value=1.4  Score=43.82  Aligned_cols=191  Identities=17%  Similarity=0.223  Sum_probs=117.2

Q ss_pred             hhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh---cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471          150 ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM---GRSNIAALVQLLTATSPRIREKTVTVICSLAES  226 (534)
Q Consensus       150 ~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (534)
                      +.....+...+..+.......|..++..+.+++....-  ..++   ....++.+.+.++.+..+-+..|++++..++-.
T Consensus        39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~lt  116 (309)
T PF05004_consen   39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALT  116 (309)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Confidence            33444477778888888899999999999999864332  2222   224577888888888877778888888888654


Q ss_pred             ---CchhHHHHhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhhc---C-hhhHHHHHhCCChHHH--HHHHc-------
Q 009471          227 ---GSCENWLVSEGVLPPLIRLVESGS--TVGKEKATISLQRLSM---S-AEMARAIVGHGGVRPL--IEICQ-------  288 (534)
Q Consensus       227 ---~~~~~~l~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~~Ls~---~-~~~~~~l~~~g~i~~L--v~ll~-------  288 (534)
                         .+....+++ ...|+|.+++.+++  ...+..++.+|.-++.   . .+......  ..+..+  ....+       
T Consensus       117 lg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~  193 (309)
T PF05004_consen  117 LGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPV  193 (309)
T ss_pred             cCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCccc
Confidence               122233332 46788888888764  4455566666665542   2 22222110  011211  11111       


Q ss_pred             ---cCChHHHHHHHHHHHHccC-Cch--HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471          289 ---TGDSVSQAAAACTLKNISA-VPE--VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (534)
Q Consensus       289 ---~~~~~~~~~a~~aL~nLa~-~~~--~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La  348 (534)
                         .+++.+...|+.+..-|.. .+.  .. ... ...++.|..+|.+.+. ++|..|-.+|.-|-
T Consensus       194 ~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~d~-~VRiAAGEaiAll~  256 (309)
T PF05004_consen  194 VAAEDDAALVAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSDDV-DVRIAAGEAIALLY  256 (309)
T ss_pred             ccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence               1235677777666655554 232  22 222 4569999999998886 89999988887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.52  E-value=0.93  Score=44.85  Aligned_cols=170  Identities=13%  Similarity=0.114  Sum_probs=110.9

Q ss_pred             CcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh--hHH
Q 009471          196 SNIAALV-QLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--MAR  272 (534)
Q Consensus       196 g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~~~  272 (534)
                      +.+..|+ ..++++++.+|+.|+.+|+..+--+.   .+. ...++.+...++.++..++..|..++..+.....  ...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            4455555 57788899999999999999988664   111 1226778888877899999999999988854321  111


Q ss_pred             H-------HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCC---ChhHHHHHHH
Q 009471          273 A-------IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAE  342 (534)
Q Consensus       273 ~-------l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~---~~~v~~~a~~  342 (534)
                      .       ......+..+.+.+.+.+++++..++..+..|--......   ...++..|+-+-.++.   ...++..-..
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence            1       1123446778888888999999999999998776432222   1334444444433222   1245555566


Q ss_pred             HHHHHccCChHHHHHHHhcCChHHHHHhhcC
Q 009471          343 CLQNLTASNENLRRSVVSEGGIRSLLAYLDG  373 (534)
Q Consensus       343 ~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~  373 (534)
                      .+-..+..++.++ ..+.+..++.+..+.+.
T Consensus       179 Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  179 FFPVYASSSPENQ-ERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHcCCHHHH-HHHHHHHHHHHHHHHhC
Confidence            6777777666655 45556667777666644

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.52  E-value=0.68  Score=47.22  Aligned_cols=186  Identities=15%  Similarity=0.130  Sum_probs=112.3

Q ss_pred             chHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhH-HHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchh
Q 009471          154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNV-LAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~-~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      .+|.+++..+... ..+.+..|+..|..+..++...+ ....+ ..+..+++.|++ .+...+..|+++|..++.+.+.+
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            3566666666544 45668888888999887763221 11111 346678888888 67889999999999999887633


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHH-HHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATIS-LQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~-L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      -.=-.+-++..++..-.+..+.+...|... +.-++.+.+....       ..+..++...|...-..+...+..+...-
T Consensus       365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l  437 (516)
T KOG2956|consen  365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTADEPRAVAVIKMLTKLFERL  437 (516)
T ss_pred             hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence            211122245555555556555555555544 4455554443322       22334444445554455555666555421


Q ss_pred             --hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          310 --EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       310 --~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                        +--..++ ..+.|++++-..+... .+|..|+.||..+..
T Consensus       438 ~~EeL~~ll-~diaP~~iqay~S~SS-~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  438 SAEELLNLL-PDIAPCVIQAYDSTSS-TVRKTAVFCLVAMVN  477 (516)
T ss_pred             CHHHHHHhh-hhhhhHHHHHhcCchH-HhhhhHHHhHHHHHH
Confidence              1111111 4578888888887776 899999999988774

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.51  E-value=0.087  Score=42.53  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCc-hhHHHHh
Q 009471          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGS-CENWLVS  235 (534)
Q Consensus       171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~-~~~~l~~  235 (534)
                      |...+..+.+++..++.+...+.+.||++.++....-  .+|.+++.|+.++.+|+...+ ++..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            5567788999999999999999999999999987644  469999999999999999875 6666544

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.50  E-value=0.25  Score=45.34  Aligned_cols=148  Identities=16%  Similarity=0.212  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHH
Q 009471          170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-----SPRIREKTVTVICSLAESGS--CENWLVSEGVLPPL  242 (534)
Q Consensus       170 ~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~L  242 (534)
                      .|..-+-.|.+.....|+.+..+++...--.+-..|...     ...+|..++.+++.|..+++  ....+....++|.+
T Consensus       115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            344444455555556777877777765533344444332     26789999999999998875  56667788999999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--------CCChHHHHH-HHccCChHHHHHHHHHHHHccCCchHHH
Q 009471          243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLIE-ICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (534)
Q Consensus       243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--------~g~i~~Lv~-ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (534)
                      +++++.++.-.+..|+.++..+-.++..-+.+++        ...+..++. +...+......++.++-..|+..++.|.
T Consensus       195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~  274 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARA  274 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHH
Confidence            9999999999999999999998887776554443        111222232 2334566777889999999999988887


Q ss_pred             HHHh
Q 009471          314 MLAE  317 (534)
Q Consensus       314 ~i~e  317 (534)
                      .+..
T Consensus       275 lL~~  278 (315)
T COG5209         275 LLSS  278 (315)
T ss_pred             HHhc
Confidence            6643

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.39  Score=52.30  Aligned_cols=213  Identities=11%  Similarity=0.065  Sum_probs=137.5

Q ss_pred             HccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471          287 CQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (534)
Q Consensus       287 l~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (534)
                      +.++-+.++..++..|+.+....+-+..+..++++....+.+++.++ .+--+|+..+..+|.-        ..+..++.
T Consensus       736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcev--------y~e~il~d  806 (982)
T KOG4653|consen  736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEV--------YPEDILPD  806 (982)
T ss_pred             hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHh--------cchhhHHH
Confidence            34455668899999999999877777778889999999999999987 7889999988888853        33445777


Q ss_pred             HHHh-hcC-----CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChh--HHHH
Q 009471          367 LLAY-LDG-----PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE--MKKL  436 (534)
Q Consensus       367 L~~~-L~~-----~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~--~~~~  436 (534)
                      +... ...     ++.+-..-.++.++..  .+-.....+ ..+...+.-+++++...+..++..+++++.-..  ....
T Consensus       807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~  885 (982)
T KOG4653|consen  807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF  885 (982)
T ss_pred             HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence            7773 321     3445555577777776  222222222 345666666676667778899999999885321  2223


Q ss_pred             HHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcCC-CcchHHHHhh--CCCHHHHHhhcCCCCchhHHHHHHHHHHhh
Q 009471          437 VGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTL-PQNCREVKRD--DKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (534)
Q Consensus       437 i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~--~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L  511 (534)
                      +  ..++..++.+.. ++++.+|..|...+..+... ....-.+...  -+....+.+.....+++..|..+..++-.+
T Consensus       886 ~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  886 F--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             H--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            3  234556666665 67788999999999888632 2222222211  123344444444554556777766665444

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.42  E-value=0.032  Score=46.30  Aligned_cols=71  Identities=15%  Similarity=0.283  Sum_probs=61.3

Q ss_pred             CcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          400 GFFPRLVHVL-KAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       400 ~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      .++..|+.+| .+.++.+...||.=|+.+++. |+.+..+.+.|+-..+++++.+++++|+..|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3588999999 455788888999999999965 8999999888999999999999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=6.2  Score=44.56  Aligned_cols=254  Identities=15%  Similarity=0.084  Sum_probs=144.9

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      .+.+..|+..+...|...+-.|++.+..+....|..   +++ ..+...+.++.-.+ +..-..++-+|+.++...--.-
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            456677777778889999999999999999888733   322 45566666554433 6677789999999987652100


Q ss_pred             HHHhcCCHHHHHHHHcc--------CCHHHHHHHHHHHHHhhcChhhH--HHHHhCCChHH-HHHHHccCChHHHHHHHH
Q 009471          232 WLVSEGVLPPLIRLVES--------GSTVGKEKATISLQRLSMSAEMA--RAIVGHGGVRP-LIEICQTGDSVSQAAAAC  300 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~~Ls~~~~~~--~~l~~~g~i~~-Lv~ll~~~~~~~~~~a~~  300 (534)
                      .. -..++|.++.-|.-        ....+|..|+-++|.++...+..  ..+.. ..... |...+-+.+-..|..|..
T Consensus       416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            00 01346666665532        24458889999999887653322  11211 11122 223344556667777777


Q ss_pred             HHHHccCCchHHHHHHhhCcHHHHHHHhhcCCCh--hHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh-hcC--Cc
Q 009471          301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL--GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY-LDG--PL  375 (534)
Q Consensus       301 aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~--~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~-L~~--~~  375 (534)
                      ++-...         ...|-+|.=++++..-+.-  ..+.++...+.--....+..++.+++     .++.. +.+  +.
T Consensus       494 AlqE~V---------GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~  559 (1133)
T KOG1943|consen  494 ALQENV---------GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVK  559 (1133)
T ss_pred             HHHHHh---------ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHH
Confidence            764332         2233333333344333321  12333333333322234444433322     22221 222  56


Q ss_pred             hHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       376 ~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      +++.+.++|.+|+..  ..+......+++++....+.+...+.-...+.+.+.
T Consensus       560 irelaa~aL~~Ls~~--~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~  610 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLT--EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI  610 (1133)
T ss_pred             HHHHHHHHHHHHHHh--hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence            899999999998862  133445677889998888888776665555544444

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=1.9  Score=48.52  Aligned_cols=243  Identities=15%  Similarity=0.112  Sum_probs=141.0

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhhcC----hhh
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGS-TVGKEKATISLQRLSMS----AEM  270 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~~Ls~~----~~~  270 (534)
                      +.++.|+..+++.+..+|=.|+..++.++...+  ..+ ...++...+.++...+ ....-.++-+|..|+..    +..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            678888888899999999999999999998776  111 2234666777666544 44555788888888753    111


Q ss_pred             HHHHHhCCChHHHHHHHcc--------CChHHHHHHHHHHHHccCCchH--HHHHHhhCcHHH-HHHHhhcCCChhHHHH
Q 009471          271 ARAIVGHGGVRPLIEICQT--------GDSVSQAAAACTLKNISAVPEV--RQMLAEEGIVSV-MIKLLDCGILLGSKEY  339 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~--------~~~~~~~~a~~aL~nLa~~~~~--~~~i~e~g~i~~-L~~ll~~~~~~~v~~~  339 (534)
                      ...+     +|.++.-|.-        ....+|.+||-++|.++..-+-  -+.+. ...... +...+.+... ..|+.
T Consensus       418 l~dV-----vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrev-ncRRA  490 (1133)
T KOG1943|consen  418 LEDV-----VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREV-NCRRA  490 (1133)
T ss_pred             HHHH-----HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchh-hHhHH
Confidence            2222     3555544432        2456889999999999873211  11111 112222 2233344444 67888


Q ss_pred             HHHHHHHHccCChHHHHHHHhcCChHHHHHhh---cC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHH-----
Q 009471          340 AAECLQNLTASNENLRRSVVSEGGIRSLLAYL---DG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVL-----  409 (534)
Q Consensus       340 a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L---~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL-----  409 (534)
                      |..++.......          |-.|.=+.++   +.  -..+.+|-..+..-       ...-.|+..++++-+     
T Consensus       491 AsAAlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~-------ia~~~~y~~~~f~~L~t~Kv  553 (1133)
T KOG1943|consen  491 ASAALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVS-------IAEFSGYREPVFNHLLTKKV  553 (1133)
T ss_pred             HHHHHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHH-------HHhhhhHHHHHHHHHHhccc
Confidence            888888766421          1122111222   11  11122222221111       111133444444433     


Q ss_pred             hcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          410 KAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       410 ~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      .+-+..+++.++++|.+|+.. +++    ...+..++|++...+++...|.-...+...+.
T Consensus       554 ~HWd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~  610 (1133)
T KOG1943|consen  554 CHWDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVI  610 (1133)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence            345789999999999998843 332    23456888888888888777766555555554

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.10  E-value=1.2  Score=45.25  Aligned_cols=269  Identities=15%  Similarity=0.172  Sum_probs=146.7

Q ss_pred             CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHH-HhhcChhhHH
Q 009471          196 SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQ-RLSMSAEMAR  272 (534)
Q Consensus       196 g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~-~Ls~~~~~~~  272 (534)
                      +-|..++.-++.+ ...+|..++--|+.-+.+++.+..+...|.+..+++.+.+. +......++.++. -++.+.....
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~  100 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH  100 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence            4477777777743 36889999888998898999999999999999999999554 3324444444444 4444443344


Q ss_pred             HHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhc--------CCChhHHHHHHHH
Q 009471          273 AIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC--------GILLGSKEYAAEC  343 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~--------~~~~~v~~~a~~~  343 (534)
                      .+.+.+....++.++... ........-      .....+-.+. ....+..+-+.+..        ......+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH-HHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            444455556667777611 000000000      0000000111 11122222222211        1111345556666


Q ss_pred             HHHHcc--------------CChHHHHHHHhcCChHHHHHhhc----C---------Cc-----hHHHHHHHHHHhhc--
Q 009471          344 LQNLTA--------------SNENLRRSVVSEGGIRSLLAYLD----G---------PL-----PQESAVGALRNLVG--  389 (534)
Q Consensus       344 L~~La~--------------~~~~~~~~i~~~g~l~~L~~~L~----~---------~~-----~~~~a~~aL~~La~--  389 (534)
                      +-.++.              ..+..++.+...|+++.++..+.    .         +.     ....++.+|-|-+.  
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            655531              12345667777889999999874    1         11     23567888888776  


Q ss_pred             CccHHHHHh--cCcHHHHHH-HHh---cCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhh-------c----
Q 009471          390 SVSQEVLIS--LGFFPRLVH-VLK---AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLL-------E----  451 (534)
Q Consensus       390 ~~~~~~l~~--~~~i~~Lv~-lL~---~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll-------~----  451 (534)
                      ..+...+..  .+.++.+.. ++.   ......+..+++.+.|++.+ ++.++.+...+....+..+.       +    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            344444443  222333322 222   23345577889999999965 66666665553322221111       1    


Q ss_pred             ---CCChHHHHHHHHHHHHhcCC
Q 009471          452 ---AKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       452 ---~~~~~v~~~A~~aL~~L~~~  471 (534)
                         ....+....++.+|-||+.+
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             ccccccchHHHHHHHhHHHheee
Confidence               12355667777788887744

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.07  E-value=0.53  Score=42.63  Aligned_cols=90  Identities=21%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc
Q 009471          374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE  451 (534)
Q Consensus       374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~  451 (534)
                      |.+|.+++.+++.|+..-  ..++ ..+++.+...|+++++.||+.|+.+|.+|...  -..+..     .+..++.++.
T Consensus         2 ~~vR~n~i~~l~DL~~r~--~~~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~-----l~~~~l~~l~   73 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRY--PNLV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ-----LFSRILKLLV   73 (178)
T ss_pred             HHHHHHHHHHHHHHHHhC--cHHH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh-----hhHHHHHHHc
Confidence            557788888888888610  1111 34688899999999999999999999998754  122221     2467777888


Q ss_pred             CCChHHHHHHHHHHHHhcCC
Q 009471          452 AKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       452 ~~~~~v~~~A~~aL~~L~~~  471 (534)
                      +++++++..|...+..+...
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999998744

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.97  E-value=0.25  Score=45.22  Aligned_cols=122  Identities=15%  Similarity=0.158  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHhc----------------CCHHHHHHHHcc------CCHHHHHHHHHHHHHhh
Q 009471          208 TSPRIREKTVTVICSLAESGSCENWLVSE----------------GVLPPLIRLVES------GSTVGKEKATISLQRLS  265 (534)
Q Consensus       208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~----------------g~i~~Lv~lL~~------~~~~~~~~A~~~L~~Ls  265 (534)
                      ++......++..|+|++..++....+.+.                ..+..|+..+..      ....-..+.+.++.|+|
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            34455677788888888877644433322                246666666655      13335668899999999


Q ss_pred             cChhhHHHHHh--CCC--hHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhh---CcHHHHHHHhh
Q 009471          266 MSAEMARAIVG--HGG--VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE---GIVSVMIKLLD  329 (534)
Q Consensus       266 ~~~~~~~~l~~--~g~--i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~---g~i~~L~~ll~  329 (534)
                      ..++.++.+..  .+.  +..|+.+..+.+..-|.-++++|+|+|...+....+...   ++++.++--+.
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999886  344  677888888887777788999999999988777777653   45555444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.95  E-value=3.6  Score=45.64  Aligned_cols=188  Identities=21%  Similarity=0.188  Sum_probs=116.4

Q ss_pred             HHHHhhcC-hhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcH--HHHHHHhhcCCChh
Q 009471          260 SLQRLSMS-AEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLG  335 (534)
Q Consensus       260 ~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i--~~L~~ll~~~~~~~  335 (534)
                      +|++++.+ +++++.+.+.||+..+...+.. ...+.+..+.+.+.|++...+.+........+  ..+-.++..-+..+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            56677654 7789999999999999999974 56678889999999999865443333221111  23333333333226


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhc--CccHHHHHhcCcHHH-HHHHHh-c
Q 009471          336 SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVG--SVSQEVLISLGFFPR-LVHVLK-A  411 (534)
Q Consensus       336 v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~-Lv~lL~-~  411 (534)
                      .-++++..|..+....+..-    .             ...+..+...+.....  ............+.+ +..++. +
T Consensus       574 rsY~~~siLa~ll~~~~~~~----~-------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s  636 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTT----E-------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS  636 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCc----c-------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence            78889999999987544311    1             1112222222222222  112222223333334 555564 4


Q ss_pred             CCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHH
Q 009471          412 GSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAK-PNSVREVAAQA  464 (534)
Q Consensus       412 ~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~-~~~v~~~A~~a  464 (534)
                      ..++.+..|.|++.++.. ++++++.+.+.|+++.+.+.-... ..+++..+...
T Consensus       637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (699)
T KOG3665|consen  637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV  691 (699)
T ss_pred             CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence            568999999999999995 478999999999999888776522 34444444433

>PRK14707 hypothetical protein; Provisional

Probab=94.67  E-value=14  Score=44.94  Aligned_cols=334  Identities=14%  Similarity=0.094  Sum_probs=175.4

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPL  242 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L  242 (534)
                      -.+......|+..|..-+-++++....+ +.-++...+.-|+ -++ ..++..|...-..++.+++.+..+- ..++..+
T Consensus       301 wpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~  378 (2710)
T PRK14707        301 WADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSV  378 (2710)
T ss_pred             CCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHH
Confidence            4566666677777777766677655433 4445555555554 455 6677777777777777777666553 3345555


Q ss_pred             HHHHcc-CCHHHHHHHHHHH-HHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHH-HHccCCchHHHHHHhhC
Q 009471          243 IRLVES-GSTVGKEKATISL-QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL-KNISAVPEVRQMLAEEG  319 (534)
Q Consensus       243 v~lL~~-~~~~~~~~A~~~L-~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL-~nLa~~~~~~~~i~e~g  319 (534)
                      ++-|.. ++..+...|+..| ..+..+.+-+..+-..|+-..|=.+.+=++..+=..++..| ..++.+.+.++.+--.+
T Consensus       379 lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~  458 (2710)
T PRK14707        379 LNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN  458 (2710)
T ss_pred             HhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH
Confidence            555554 4444555555555 44666666677776566555555555544444444444444 45666778887775555


Q ss_pred             cHHHHHHHh-hcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHHHhhc----CccH
Q 009471          320 IVSVMIKLL-DCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVG----SVSQ  393 (534)
Q Consensus       320 ~i~~L~~ll-~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~----~~~~  393 (534)
                      +.. .++.+ +=++. .+...++..|..=-..+...++.+- ...+..-++.|.. |+ +..|..++..++.    +...
T Consensus       459 va~-~LnalSKWPd~-p~c~~aa~~La~~l~~~~~l~~a~~-~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~~~~l  534 (2710)
T PRK14707        459 VTQ-ALDALSKWPDT-PICGQTASALAARLAHERRLRKALK-PQEVVIALHSLSKWPD-TPICAEAASALAERVVDELQL  534 (2710)
T ss_pred             HHH-HHHHhhcCCCC-hhHHHHHHHHHHHhcccHHHHhhcC-HHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhccchhh
Confidence            333 33444 33343 4554555555444334555543332 2223333344433 33 3355566666654    2222


Q ss_pred             HHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcC
Q 009471          394 EVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       394 ~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~  470 (534)
                      ...+...-+..+++.+ +..+....+.++..|..+. ..+..++.+- ...|..+++-+. .++......|...|.....
T Consensus       535 ~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~  613 (2710)
T PRK14707        535 RKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLV  613 (2710)
T ss_pred             hhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhc
Confidence            2222222234444444 3444556666666666554 3355555553 344677777765 3444444444444554444


Q ss_pred             CCcch-HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHH
Q 009471          471 LPQNC-REVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC  507 (534)
Q Consensus       471 ~~~~~-~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~  507 (534)
                      .+++. ..+-  ...+..++.-|..-+....-..++..
T Consensus       614 ~~~~lr~~l~--~q~lan~lNALSKWP~s~~C~~Aa~r  649 (2710)
T PRK14707        614 DEPDLRKELD--PVDVTNVLNALSKWPGTEVCAEVARL  649 (2710)
T ss_pred             cChhhhhhcc--HHHHHHHHhhhhcCCCchHHHHHHHH
Confidence            44443 3322  35567777777665544433333333

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=94.58  E-value=0.034  Score=56.27  Aligned_cols=179  Identities=11%  Similarity=0.040  Sum_probs=106.1

Q ss_pred             CHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc----Chhh----HHHHHhCCC
Q 009471          209 SPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM----SAEM----ARAIVGHGG  279 (534)
Q Consensus       209 ~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~----~~~~----~~~l~~~g~  279 (534)
                      +.-++..|.+++..+.-++. ........+....+...+.+..-..++.++|++.+++.    +.++    ...+.. -.
T Consensus       404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~l  482 (728)
T KOG4535|consen  404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LL  482 (728)
T ss_pred             HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HH
Confidence            35577788888888877776 44555566777888888888888899999999999873    1122    111111 00


Q ss_pred             hHHHHHH---HccCChHHHHHHHHHHHHccCCch----HHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccCC
Q 009471          280 VRPLIEI---CQTGDSVSQAAAACTLKNISAVPE----VRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTASN  351 (534)
Q Consensus       280 i~~Lv~l---l~~~~~~~~~~a~~aL~nLa~~~~----~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~~  351 (534)
                      +..++..   +......++..+.++|.|+...-+    ......+++.+..+..-.. .+.. .++.+++.+++|+-.+.
T Consensus       483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~-kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAM-KVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceeccccc-ccchHHHHHHHHhhcCc
Confidence            1122211   222356788999999999876221    1111122333333333322 3333 79999999999998732


Q ss_pred             hH-HHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc
Q 009471          352 EN-LRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG  389 (534)
Q Consensus       352 ~~-~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~  389 (534)
                      .. .+..-......+.|..++.+   -.+|..|.++|.--..
T Consensus       562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            21 11111112235556666543   6688888888877665

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=3.4  Score=47.00  Aligned_cols=213  Identities=16%  Similarity=0.205  Sum_probs=123.8

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHH
Q 009471          207 ATSPRIREKTVTVICSLAESGSCENWLVSE--GVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRP  282 (534)
Q Consensus       207 ~~~~~v~~~A~~~L~~La~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~  282 (534)
                      +.+..+|..+-++|..++..++......+.  .+...|..-+++.+...+...+.+|..|-..  .+....+.  ..|+.
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHH
Confidence            346899999999999999885433222221  2334444455555666777777777776432  23332221  12333


Q ss_pred             HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhC------cHHHHHHHhhcCCCh-hHHHHH--HHHHHHHccCChH
Q 009471          283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEG------IVSVMIKLLDCGILL-GSKEYA--AECLQNLTASNEN  353 (534)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g------~i~~L~~ll~~~~~~-~v~~~a--~~~L~~La~~~~~  353 (534)
                      ++-.++..+...+..+..+|..++.    -....+.|      .+..++..+..+... ..+..+  +-++..+....  
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~--  816 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF--  816 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH--
Confidence            3333477788889999999988873    11111222      566666666544111 222222  33333333211  


Q ss_pred             HHHHHHhcCChHHHHHh----hcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471          354 LRRSVVSEGGIRSLLAY----LDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (534)
Q Consensus       354 ~~~~i~~~g~l~~L~~~----L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (534)
                        ..+.+.+.++.+++.    |.+  ++++..|++.+..++.  ++..-.-....+++.++.++......++...-..+-
T Consensus       817 --~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle  894 (1176)
T KOG1248|consen  817 --KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE  894 (1176)
T ss_pred             --hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              122333445555554    332  6788999999999987  322222223447888888888888888888888888


Q ss_pred             HhcC
Q 009471          426 RVCT  429 (534)
Q Consensus       426 ~la~  429 (534)
                      .|.+
T Consensus       895 kLir  898 (1176)
T KOG1248|consen  895 KLIR  898 (1176)
T ss_pred             HHHH
Confidence            8774

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.45  E-value=0.18  Score=44.65  Aligned_cols=144  Identities=22%  Similarity=0.271  Sum_probs=91.9

Q ss_pred             hHHHHHhhc----CCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHH-HH
Q 009471          364 IRSLLAYLD----GPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKK-LV  437 (534)
Q Consensus       364 l~~L~~~L~----~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~-~i  437 (534)
                      ++.++..+.    .+++|..+.-++..+-. ..++.. ...+-+.+-..+..++.+-...+..++..+-.. ++... .+
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~-~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~   82 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD-AAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF   82 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence            444555443    26778877777777632 111111 111223333344444445666777777777643 66554 44


Q ss_pred             HhcCchHHHHHhhc--CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchh-HHHHHHHHHHhh
Q 009471          438 GEAGCTPLLIKLLE--AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNT-AKKYAVACLASL  511 (534)
Q Consensus       438 ~~~g~v~~Lv~ll~--~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~-~k~~a~~~L~~L  511 (534)
                      ...|+++.+..++.  +++..++..++++|..= ...++++.++.+ .+++.|-+++..++++. +|-+|...|+.|
T Consensus        83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA-c~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAA-CIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH-TTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH-HccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            67899999999998  88899999999988666 455555555553 78899999997665555 888888887653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.37  E-value=0.081  Score=32.55  Aligned_cols=28  Identities=32%  Similarity=0.592  Sum_probs=25.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAE  225 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~  225 (534)
                      +|.++++++++++++|..|+.+|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PRK14707 hypothetical protein; Provisional

Probab=94.35  E-value=17  Score=44.40  Aligned_cols=326  Identities=16%  Similarity=0.159  Sum_probs=173.9

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPL  242 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~L  242 (534)
                      ..+.....+|+..+..-+...++.+..+- ..-+..|+...+.  ++.+.+..+......++.++..+..+ ...+|..+
T Consensus       133 ~~~~~~c~~a~a~i~~~~~~~~~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~  210 (2710)
T PRK14707        133 NLDSGRCERAVARLARHLRREDKARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATV  210 (2710)
T ss_pred             CCCchHHHHHHHHHHHHhccccchhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHH
Confidence            33444455555555554443333333232 2336666665543  34788888888878887777655555 44456666


Q ss_pred             HHHHcc--CCHHHHHHHHHHHH-HhhcChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccCCchHHHHHHhh
Q 009471          243 IRLVES--GSTVGKEKATISLQ-RLSMSAEMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISAVPEVRQMLAEE  318 (534)
Q Consensus       243 v~lL~~--~~~~~~~~A~~~L~-~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~~~~~~~~i~e~  318 (534)
                      ++-+..  +++..+. ++..|. .++.++.-+..+-..|....|=.+++-++. .....+..+=..++..+..++.+...
T Consensus       211 lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q  289 (2710)
T PRK14707        211 LNALCKWPDTPDCGN-AVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI  289 (2710)
T ss_pred             HHHHhcCCCChhHHH-HHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH
Confidence            665554  3555544 444444 455544444444334444444455554444 34444444445666666776666554


Q ss_pred             CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHH
Q 009471          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQE  394 (534)
Q Consensus       319 g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~  394 (534)
                      ++-..|-.+-+-.+. .+...+...|..=-.+++..+. -++.-++...++.|..    ...+..+......++......
T Consensus       290 ~vanalNalSKwpd~-~vc~~Aa~~la~rl~~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~  367 (2710)
T PRK14707        290 NVTQALNALSKWADL-PVCAEAAIALAERLADDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELR  367 (2710)
T ss_pred             HHHHHHhhhhcCCCc-hHHHHHHHHHHHHHhccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhh
Confidence            433333333333443 5544444444443334666653 3344456666666654    334566666666666532222


Q ss_pred             HHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHH-HhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc-CC
Q 009471          395 VLISLGFFPRLVHVLK-AGSLGAQQAAASALC-RVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TL  471 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~-~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~-~~  471 (534)
                      .-++...+...++.+. =++..+...|+..|. .+..+++.++.+-..|+-..|-.+-+-++..+...+..+|..-. .+
T Consensus       368 ~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d  447 (2710)
T PRK14707        368 KDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHD  447 (2710)
T ss_pred             cccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc
Confidence            2233445666666664 334455555555554 57777889998866665555555556677777777777776544 33


Q ss_pred             CcchHHHHhhCCCHHHHHhhcCCCCc
Q 009471          472 PQNCREVKRDDKSVPNLVQLLDPSPQ  497 (534)
Q Consensus       472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~  497 (534)
                      .+-++.+--  -.|...+.-|..=|+
T Consensus       448 ~~l~~~~~p--~~va~~LnalSKWPd  471 (2710)
T PRK14707        448 TELCKALDP--INVTQALDALSKWPD  471 (2710)
T ss_pred             HHHHhhcCh--HHHHHHHHHhhcCCC
Confidence            443333322  234555555554333

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=94.32  E-value=3.7  Score=45.36  Aligned_cols=259  Identities=17%  Similarity=0.093  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV  246 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL  246 (534)
                      .+..+..|+.++...++.  +. ..-...+.++.|.++......++-..-.++|+..+..++-.....++.++|.++.+.
T Consensus       504 ~~~~ki~a~~~~~~~~~~--~v-l~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF  580 (1005)
T KOG2274|consen  504 PPPVKISAVRAFCGYCKV--KV-LLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF  580 (1005)
T ss_pred             CCchhHHHHHHHHhccCc--ee-ccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence            455577777777666521  11 111234778888888887888999999999999998877555666777788877766


Q ss_pred             c--cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCC----hHHHHHHHHHHHHccCC-c-hHHHHHHhh
Q 009471          247 E--SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD----SVSQAAAACTLKNISAV-P-EVRQMLAEE  318 (534)
Q Consensus       247 ~--~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~----~~~~~~a~~aL~nLa~~-~-~~~~~i~e~  318 (534)
                      -  +.++.+...+-.++..++....+...+ ..-.+|.++..+..++    +.....++..|.-+.++ + ..-+.+. .
T Consensus       581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~  658 (1005)
T KOG2274|consen  581 LKYSEDPQVASLAQDLFEELLQIAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-C  658 (1005)
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-H
Confidence            4  357777778888888877644333222 1334799999998765    55666677777655552 2 3333333 4


Q ss_pred             CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChH--HHHHhh---cCCchHHHHHHHHHHhhcC---
Q 009471          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR--SLLAYL---DGPLPQESAVGALRNLVGS---  390 (534)
Q Consensus       319 g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~--~L~~~L---~~~~~~~~a~~aL~~La~~---  390 (534)
                      -++|.+.+..-+.++.++-.++-+||+.+.+.....-..--.++|..  .+++++   =+|++-+.++...+.+...   
T Consensus       659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit  738 (1005)
T KOG2274|consen  659 YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLIT  738 (1005)
T ss_pred             HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHH
Confidence            46888888875444448889999999998875433211111233333  444433   2466555555555555431   


Q ss_pred             ccHHHHHh--cCcHHH-HHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          391 VSQEVLIS--LGFFPR-LVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       391 ~~~~~l~~--~~~i~~-Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                      ...+.+-.  ..++.. +.++-+.....+-+.-..++++|...
T Consensus       739 ~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t  781 (1005)
T KOG2274|consen  739 HASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT  781 (1005)
T ss_pred             HHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence            11111111  011222 23333556677778888888888765

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.28  E-value=7.3  Score=39.88  Aligned_cols=101  Identities=12%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             HHHhc-CCcHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHc-cC---CHHHHHHHHHH
Q 009471          190 LAVMG-RSNIAALVQLLTATS---PRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVE-SG---STVGKEKATIS  260 (534)
Q Consensus       190 ~~i~~-~g~v~~Lv~lL~~~~---~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~-~~---~~~~~~~A~~~  260 (534)
                      +.+++ ......|...+++..   +.+-..|+.++..+..+++ +-..+.+.|+++.++..+. .+   +.++....-.+
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            34455 344566667777764   7899999999999999887 7788889999999999888 54   56667777788


Q ss_pred             HHHhhcChhhHHHHHhCCChHHHHHHHccC
Q 009471          261 LQRLSMSAEMARAIVGHGGVRPLIEICQTG  290 (534)
Q Consensus       261 L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~  290 (534)
                      +..||-|....+.+.+.+.++.+++++.+.
T Consensus       179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence            999999999999999999999999998764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.25  E-value=3.5  Score=42.49  Aligned_cols=252  Identities=14%  Similarity=0.043  Sum_probs=129.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHH-HhCCChHHH
Q 009471          206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAI-VGHGGVRPL  283 (534)
Q Consensus       206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l-~~~g~i~~L  283 (534)
                      ++++..++..|++.|++.++..+.+..-...-.+..+++-|.++ +.++.-.+..+|..+...-.+.... .=.+..-.+
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl  347 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL  347 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence            45668899999999999998854322222333566666666554 7778878887777766543332211 012333456


Q ss_pred             HHHHccCChHHHHHHHHHHHHccC--CchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHH
Q 009471          284 IEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV  359 (534)
Q Consensus       284 v~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~  359 (534)
                      ..+..+.+++++..+...+..|+.  +...+..+.|  .+....++-.+.+.++  -.-.|+......+..+- .++...
T Consensus       348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p--~va~ACr~~~~~c~p~l-~rke~~  424 (533)
T KOG2032|consen  348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNP--YVARACRSELRTCYPNL-VRKELY  424 (533)
T ss_pred             HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCCh--HHHHHHHHHHHhcCchh-HHHHHH
Confidence            677788899999888887777765  2344555554  2222333334455554  24455555555554221 121111


Q ss_pred             hcCChHHHHHhhcCCchHHHHHHHHHHhhc---CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHH
Q 009471          360 SEGGIRSLLAYLDGPLPQESAVGALRNLVG---SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMK  434 (534)
Q Consensus       360 ~~g~l~~L~~~L~~~~~~~~a~~aL~~La~---~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~  434 (534)
                      +  .++..   ++..-.+..+  .....|.   +-.++...  -.......++++.-+.++..+...-.++..+  +..+
T Consensus       425 ~--~~q~~---ld~~~~~~q~--Fyn~~c~~L~~i~~d~l~--~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c  495 (533)
T KOG2032|consen  425 H--LFQES---LDTDMARFQA--FYNQWCIQLNHIHPDILM--LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAAC  495 (533)
T ss_pred             H--HHhhh---hHHhHHHHHH--HHHHHHHHHhhhCHHHHH--HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHH
Confidence            0  11111   1100001111  1111111   00011000  0111222233333345666666555555533  4444


Q ss_pred             HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       435 ~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      ......-....|-.+...+-++++..|..|+..+.
T Consensus       496 ~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  496 SSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            44433334566667777888999999999987664

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.23  E-value=10  Score=41.45  Aligned_cols=440  Identities=16%  Similarity=0.130  Sum_probs=208.5

Q ss_pred             cccCccchhhHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHH-------HHHHHHHHHHHhcCCC----------
Q 009471           36 QIKGFPGRWKMIISKLEQIPSHLSDLSSHPCFSKNALCREQLQAVSK-------TLKEAIELAELCVKEK----------   98 (534)
Q Consensus        36 ~~~~f~~~~~~i~~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~l~~~c~~~~----------   98 (534)
                      +-+.=+.||..|-+|+--|...=-      .|+++-. .++.=++.+       .|++...++-+--..-          
T Consensus        32 espvn~r~c~~~lskllyll~qge------~~~~~ea-te~ff~~tKlfQskd~~LRr~vYl~Ikels~isedviivtss  104 (865)
T KOG1078|consen   32 ESPVNPRKCRHILSKLLYLLNQGE------HFGETEA-TELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVIIVTSS  104 (865)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccc------ccchhhH-HHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhhhhhHH
Confidence            345568899999999887765311      3444433 333333333       3333333332210000          


Q ss_pred             ----CCCc--chhhhhhHhhhchhhhh-hhchhhHHhhCCCCCCC-----cccccCCCCchhhhhhhchHHHHHHHHhcC
Q 009471           99 ----YEGK--LRMQSDLDALSGKLDLN-LHDCGLLIKTGVLGEAT-----LPLSVAGSSTDAEATTHGNTRELLARLQIG  166 (534)
Q Consensus        99 ----~~~~--l~~~s~~~~~~~~l~~~-~~~~~~~~~~g~l~~~~-----~~v~~~p~~~a~~~~~~~~i~~Ll~~L~~~  166 (534)
                          ..|+  +.-...++++...+|+. +.+..+..+.+..+...     +.+.+.-=...+.+....+.........+.
T Consensus       105 lmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~  184 (865)
T KOG1078|consen  105 LMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSD  184 (865)
T ss_pred             HHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcH
Confidence                1221  33344667777777766 55566666666543221     112111101112333344444444444444


Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHH
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT---SPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL  242 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L  242 (534)
                      +.-.+..|+.-|.++-+.+.-         .+..+++.+.++   ++--+-.-.++...+..+.+ ....     ..+.+
T Consensus       185 ~~m~QyHalglLyqirk~drl---------a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~-----~~~fl  250 (865)
T KOG1078|consen  185 NIMVQYHALGLLYQIRKNDRL---------AVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSP-----LFPFL  250 (865)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhh-----HHHHH
Confidence            555567777777776543321         133333333332   22222222233333333322 2222     36777


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-c--------hHHH
Q 009471          243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P--------EVRQ  313 (534)
Q Consensus       243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~--------~~~~  313 (534)
                      -..+.+....+...|+.++.++......  .+..  .+..|--+|.++.+..|..|.++|..++.. |        +.-.
T Consensus       251 ~s~l~~K~emV~~EaArai~~l~~~~~r--~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~  326 (865)
T KOG1078|consen  251 ESCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES  326 (865)
T ss_pred             HHHHhchhHHHHHHHHHHHhhccccCHh--hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence            7888888888899999999998653211  1111  457787889999999999999999998862 2        2222


Q ss_pred             HHHhhC---cHHHHHHHhhcCCCh---hHHHHHHHHHHHHccCChH-----HHHH-----HHhcCChHHHHHhhcC---C
Q 009471          314 MLAEEG---IVSVMIKLLDCGILL---GSKEYAAECLQNLTASNEN-----LRRS-----VVSEGGIRSLLAYLDG---P  374 (534)
Q Consensus       314 ~i~e~g---~i~~L~~ll~~~~~~---~v~~~a~~~L~~La~~~~~-----~~~~-----i~~~g~l~~L~~~L~~---~  374 (534)
                      .+.+.+   .-..+.-+++.|...   ...........+++..+.-     .+..     -.+.+.+.-|.++|.+   -
T Consensus       327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~  406 (865)
T KOG1078|consen  327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF  406 (865)
T ss_pred             hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence            222211   122334445555541   1122233333333321110     0000     0011112222222221   1


Q ss_pred             chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC
Q 009471          375 LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK  453 (534)
Q Consensus       375 ~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~  453 (534)
                      +.+...+.++..+.. ....    ...++..|..++.+..  ...-+..+|..+...  .-+......++..+.+.+.-.
T Consensus       407 e~K~aivd~Ii~iie~~pds----Ke~~L~~LCefIEDce--~~~i~~rILhlLG~E--gP~a~~Pskyir~iyNRviLE  478 (865)
T KOG1078|consen  407 EFKRAIVDAIIDIIEENPDS----KERGLEHLCEFIEDCE--FTQIAVRILHLLGKE--GPKAPNPSKYIRFIYNRVILE  478 (865)
T ss_pred             hHHHHHHHHHHHHHHhCcch----hhHHHHHHHHHHHhcc--chHHHHHHHHHHhcc--CCCCCCcchhhHHHhhhhhhh
Confidence            223333333333333 1111    0122334444443221  222333344443321  000000112455555555557


Q ss_pred             ChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          454 PNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       454 ~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +..+|..|..+|..+....+....     .....|.+++... +.+++..|.-.|.++-..
T Consensus       479 n~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~~~  533 (865)
T KOG1078|consen  479 NAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLEEK  533 (865)
T ss_pred             hhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhhhh
Confidence            788999999999999733222111     2234455777665 347888888888887744

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.21  E-value=2.4  Score=44.26  Aligned_cols=157  Identities=16%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCC---hhHHHHHHHHHHHHccCChHHHHH
Q 009471          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL---LGSKEYAAECLQNLTASNENLRRS  357 (534)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~---~~v~~~a~~~L~~La~~~~~~~~~  357 (534)
                      ..+.+++.++++..+..+..-|..++.++.....++...++..|..+++++..   .++...++.++..+-...- ....
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eeee
Confidence            56778888899999988999999999999999999999999999999998875   1334445555555443211 1111


Q ss_pred             HHhcCChHHHHHhhc----CCchHHHHHHHHHHhhc-Cc-cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 009471          358 VVSEGGIRSLLAYLD----GPLPQESAVGALRNLVG-SV-SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-  430 (534)
Q Consensus       358 i~~~g~l~~L~~~L~----~~~~~~~a~~aL~~La~-~~-~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-  430 (534)
                      .+...++.....+..    +..+...|+..|-++.. .. ....+.+.--+..|+..++..+..++..|...+..+... 
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence            122223334444332    14567889999999887 33 345566677799999999999999999988888777642 


Q ss_pred             -hhHHHHHH
Q 009471          431 -AEMKKLVG  438 (534)
Q Consensus       431 -~~~~~~i~  438 (534)
                       ++.++.+.
T Consensus       245 ~~~~R~~~~  253 (713)
T KOG2999|consen  245 PDDKRFEMA  253 (713)
T ss_pred             ChHHHHHHH
Confidence             44444443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.20  E-value=4.6  Score=41.12  Aligned_cols=268  Identities=17%  Similarity=0.124  Sum_probs=143.4

Q ss_pred             hhhchHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-CCHHHH-HHHHHHHHHhhcCC
Q 009471          151 TTHGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIR-EKTVTVICSLAESG  227 (534)
Q Consensus       151 ~~~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~-~~A~~~L~~La~~~  227 (534)
                      .+...|..++..|..+ ....|..++-.|..-+. ++..+..+...|.+..+++.+.. ++..+- -.++.++..++.+.
T Consensus        18 rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~   96 (361)
T PF07814_consen   18 RFADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG   96 (361)
T ss_pred             hHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC
Confidence            3555678888888744 34557777777777765 67788899999999999999844 444244 44455555556665


Q ss_pred             chhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc---------CChH
Q 009471          228 SCENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT---------GDSV  293 (534)
Q Consensus       228 ~~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~---------~~~~  293 (534)
                      ..-..+...+....++++++-.     .......-.   .+++...   +.     .+..+......         ....
T Consensus        97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk~~---~~-----~~~~~~~~~~~~~~~~~~~~~~ls  165 (361)
T PF07814_consen   97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSKVQ---QK-----SRSLCKELLSSGSSWKSPKPPELS  165 (361)
T ss_pred             cchhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhhHHH---HH-----HHHHHHHHHhccccccccCCcccc
Confidence            5555555666677778888711     000000000   0011100   00     00111111100         0111


Q ss_pred             HHHHHHHHHHHcc---------------CCchHHHHHHhhCcHHHHHHHhhc----CC------C-----hhHHHHHHHH
Q 009471          294 SQAAAACTLKNIS---------------AVPEVRQMLAEEGIVSVMIKLLDC----GI------L-----LGSKEYAAEC  343 (534)
Q Consensus       294 ~~~~a~~aL~nLa---------------~~~~~~~~i~e~g~i~~L~~ll~~----~~------~-----~~v~~~a~~~  343 (534)
                      -+..+..++-.++               ..+..++.+.+.|++..+++++.+    ..      .     ....+.++.+
T Consensus       166 p~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~I  245 (361)
T PF07814_consen  166 PQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSI  245 (361)
T ss_pred             cccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHH
Confidence            2233333333331               122456677778899999998852    11      0     0234568888


Q ss_pred             HHHHccCChHHHHHHHhc--CChHHHHHh-hc---C--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHH----
Q 009471          344 LQNLTASNENLRRSVVSE--GGIRSLLAY-LD---G--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL----  409 (534)
Q Consensus       344 L~~La~~~~~~~~~i~~~--g~l~~L~~~-L~---~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL----  409 (534)
                      |-+.+..++.++......  +.+..+... +.   +  +.....+++.+.|++-  +.....+...++...+..+.    
T Consensus       246 LEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~  325 (361)
T PF07814_consen  246 LESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFF  325 (361)
T ss_pred             HHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhc
Confidence            888887777766666532  233333222 22   2  3446789999999987  33434444433322221111    


Q ss_pred             ---h-------cCCHHHHHHHHHHHHHhcCC
Q 009471          410 ---K-------AGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       410 ---~-------~~~~~v~~~A~~aL~~la~~  430 (534)
                         .       ...-+....+.+++-||+..
T Consensus       326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  326 CVLSLPNYVPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             ccccccccccccccchHHHHHHHhHHHheee
Confidence               1       01125666777777777754

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.88  E-value=0.94  Score=43.22  Aligned_cols=98  Identities=16%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcC-CCcchHHHHhhCCCHHHHHhh
Q 009471          415 GAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQL  491 (534)
Q Consensus       415 ~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~l  491 (534)
                      .....|+..|.-++ -++..+..+.+...+..|++++. ...+.++..+..+|..+.. .+.|.+.|.. .+|+..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHH
Confidence            34556777888777 46999999999999999999995 5678899999999888774 4777776655 7999999999


Q ss_pred             cCCCC-chhHHHHHHHHHHhhch
Q 009471          492 LDPSP-QNTAKKYAVACLASLSP  513 (534)
Q Consensus       492 L~~~~-~~~~k~~a~~~L~~L~~  513 (534)
                      +.... +..+|..++..|.-...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHc
Confidence            98873 45677777777765543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.76  E-value=0.54  Score=42.79  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC---------CCHHHHHHHHHHHHHhh
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA---------TSPRIREKTVTVICSLA  224 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~---------~~~~v~~~A~~~L~~La  224 (534)
                      ....++..+..+....  +.+..|.-.+.. +......|++.||+..|+.+|..         .+.+.+..++.+|..+.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3455667776665443  455555555544 34567888899999999998853         34688999999999999


Q ss_pred             cCCchhHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009471          225 ESGSCENWLV-SEGVLPPLIRLVESGSTVGKEKATISLQRLS  265 (534)
Q Consensus       225 ~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls  265 (534)
                      ........++ ..+.+..|+..|.+.+..++..+...|..++
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8877555555 4689999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.68  E-value=8.7  Score=39.60  Aligned_cols=181  Identities=17%  Similarity=0.216  Sum_probs=118.1

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhhcChh----hHHHHHhCCChHHHHHHHccC-------ChHHHHHHHHHHHHccCCch
Q 009471          242 LIRLVESGSTVGKEKATISLQRLSMSAE----MARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKNISAVPE  310 (534)
Q Consensus       242 Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~----~~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~nLa~~~~  310 (534)
                      +..+++..+.+-+-.|.-....+..+++    +++.+.+.-|.+-+-+++.++       +...+..+...|.-.++.|+
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5556666666667777777777877654    456678888888888888753       23345667778888888885


Q ss_pred             H--HHHHHhhCcHHHHHHHhhcCCChh------HHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc---hHHH
Q 009471          311 V--RQMLAEEGIVSVMIKLLDCGILLG------SKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL---PQES  379 (534)
Q Consensus       311 ~--~~~i~e~g~i~~L~~ll~~~~~~~------v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~---~~~~  379 (534)
                      .  ...|++  .||.+.+.+..+.+.+      +.+.+..||..++.. +...+.++..|+++.+.++-..++   -...
T Consensus        96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            4  345544  4899999997655433      688899999999986 555668889999999998754432   2344


Q ss_pred             HHHHHHHhhc-----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009471          380 AVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV  427 (534)
Q Consensus       380 a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~l  427 (534)
                      ++.++.-+..     ++....+..  .+..+-.-+...+...+.+.+..|..+
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444444433     222322222  133333333444566777888887754

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=93.57  E-value=6.9  Score=40.20  Aligned_cols=166  Identities=13%  Similarity=0.109  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHh-hcChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHH
Q 009471          252 VGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKL  327 (534)
Q Consensus       252 ~~~~~A~~~L~~L-s~~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~l  327 (534)
                      +-++.|..-|..+ +......|.-.-...+..+++++.+ .++..+..|+++|..++.+...  .+.+  +-++..+++.
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLEA  379 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHHH
Confidence            3444555434444 4444445542222334667788887 7788899999999999875422  2222  3345556666


Q ss_pred             hhcCCChhH-HHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHh--cCcH
Q 009471          328 LDCGILLGS-KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLIS--LGFF  402 (534)
Q Consensus       328 l~~~~~~~v-~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~--~~~i  402 (534)
                      -.+..+ ++ +..+=.|+.-+++..+..+        |..+..++.+  ...-..++..+..++..-..+.+..  ..+.
T Consensus       380 a~ds~~-~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia  450 (516)
T KOG2956|consen  380 AKDSQD-EVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA  450 (516)
T ss_pred             HhCCch-hHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence            555555 44 4444455666666666544        2333333332  3334455667777776444454433  6789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          403 PRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       403 ~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      |.+++..++.+..|++.|..+|..+.
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            99999999999999999999988876

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.41  E-value=16  Score=41.01  Aligned_cols=265  Identities=15%  Similarity=0.141  Sum_probs=144.7

Q ss_pred             CcHHHHHHHhc------CC--CHHHHHHHHHHHHHhhcC----CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009471          196 SNIAALVQLLT------AT--SPRIREKTVTVICSLAES----GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQR  263 (534)
Q Consensus       196 g~v~~Lv~lL~------~~--~~~v~~~A~~~L~~La~~----~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~  263 (534)
                      +.++.++..+.      .+  ++.-.+-|+.++++|++-    ++.+.. .+.-+++++...+++...-++.+|||++..
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            66788888887      22  367778889999888842    223333 344567777788889888999999999999


Q ss_pred             hhc-ChhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCch-HHHHHHh--hCcHHHHHHHhhcCCChhHHH
Q 009471          264 LSM-SAEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPE-VRQMLAE--EGIVSVMIKLLDCGILLGSKE  338 (534)
Q Consensus       264 Ls~-~~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~-~~~~i~e--~g~i~~L~~ll~~~~~~~v~~  338 (534)
                      .+. +-.....+  ..+++...+.+. +.+-.++..|+-+|..+-.+.+ ....+..  .+.++.++.+.+.-.. +...
T Consensus       489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt  565 (1010)
T KOG1991|consen  489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLT  565 (1010)
T ss_pred             HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHH
Confidence            983 21111111  112244555555 7777889889999988776553 3343433  4455566666654333 2222


Q ss_pred             HHHHHHHHHccC-ChHHHHHHHh--cCChHHHHHhhcC-----C---chHHHHHHHHHHhhc-----CccHHHHH--hcC
Q 009471          339 YAAECLQNLTAS-NENLRRSVVS--EGGIRSLLAYLDG-----P---LPQESAVGALRNLVG-----SVSQEVLI--SLG  400 (534)
Q Consensus       339 ~a~~~L~~La~~-~~~~~~~i~~--~g~l~~L~~~L~~-----~---~~~~~a~~aL~~La~-----~~~~~~l~--~~~  400 (534)
                      .++..   +... .++......+  ........+++++     +   +-+..|.++|..+..     +..++.+.  +..
T Consensus       566 ~vme~---iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~  642 (1010)
T KOG1991|consen  566 NVMEK---IVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI  642 (1010)
T ss_pred             HHHHH---HHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            22222   2111 1111111110  1223445555542     2   234566666666654     23333332  344


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      +++.+-..|++.-.++-+++...+..+... ++....|+  |..+.+.+.+.....+--...+-+|.|..
T Consensus       643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~v  710 (1010)
T KOG1991|consen  643 VLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYV  710 (1010)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence            566666667777778888888887777643 33333332  22444444444333333344444444443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.36  E-value=17  Score=40.91  Aligned_cols=179  Identities=13%  Similarity=0.100  Sum_probs=110.3

Q ss_pred             HHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc----cCC----hHHHHHH
Q 009471          232 WLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----TGD----SVSQAAA  298 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~----~~~----~~~~~~a  298 (534)
                      .+.+.|++..++.++.+-     ...........|...+....+++.+.+.|+++.|++.+.    .+.    +.+-...
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            344678999999999863     345566677778888888999999999999999998774    333    3444444


Q ss_pred             HHHHHHccCCc---hHHH--HHH--------hhCcHHHHHHHhhcCC---ChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471          299 ACTLKNISAVP---EVRQ--MLA--------EEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEG  362 (534)
Q Consensus       299 ~~aL~nLa~~~---~~~~--~i~--------e~g~i~~L~~ll~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (534)
                      +.++..+....   ....  ...        +..-+..+++.+.+..   ...+....+.+|-.|+.+++...+.+++  
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--  269 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--  269 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence            44443333211   1110  001        1223667777776442   2367888999999999988877665543  


Q ss_pred             ChHHHHHhhc-----CC--chHHHHHHHHHHhhc--C------ccHHHHHhcCcHHHHHHHHhcCCHH
Q 009471          363 GIRSLLAYLD-----GP--LPQESAVGALRNLVG--S------VSQEVLISLGFFPRLVHVLKAGSLG  415 (534)
Q Consensus       363 ~l~~L~~~L~-----~~--~~~~~a~~aL~~La~--~------~~~~~l~~~~~i~~Lv~lL~~~~~~  415 (534)
                         .+-.+++     ..  .--..-+..+..++.  +      .-++.+++.|++...+++|...-|.
T Consensus       270 ---~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~  334 (802)
T PF13764_consen  270 ---HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS  334 (802)
T ss_pred             ---HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence               3333332     11  111223444555544  1      2246778899999999988655443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.24  E-value=0.37  Score=36.34  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471          417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKR  480 (534)
Q Consensus       417 ~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (534)
                      .+.|+|++++++.++.....+.+.+.++.++++.+ ++...+|.-+..+|.-++...+.++.+.+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~   68 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE   68 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            46899999999999888888888899999999997 67788999999999999988888776654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.20  E-value=0.13  Score=31.58  Aligned_cols=29  Identities=31%  Similarity=0.427  Sum_probs=24.7

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~  429 (534)
                      ++|.++++++++++.||..|+.+|.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            36889999999999999999999998874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.96  E-value=6.1  Score=41.38  Aligned_cols=162  Identities=17%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCH----HHHHHHHHHHHHhhcChhhHHH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGST----VGKEKATISLQRLSMSAEMARA  273 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~~~~~A~~~L~~Ls~~~~~~~~  273 (534)
                      ...+.+.+.+++...+..+...|..++.+...-..++...++..|.++++++..    ++......++..+-.+.-..|.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            566778888999888888999999999988888889999999999999998744    3444445555554433333344


Q ss_pred             HHhCCChHHHHHHHc--cCChHHHHHHHHHHHHccCCch-HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471          274 IVGHGGVRPLIEICQ--TGDSVSQAAAACTLKNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~--~~~~~~~~~a~~aL~nLa~~~~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~  350 (534)
                      .+...+|.....+..  ..+..+-..|+..|-++..++. .+..+.++--+..++..++..+. .++..|...+..+...
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~-~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQ-RIQTCAIALLNALFRK  243 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcch-HHHHHHHHHHHHHHhh
Confidence            333444444444442  2244556788888888887664 66667778889999999988886 7888887777776653


Q ss_pred             -ChHHHHHHHh
Q 009471          351 -NENLRRSVVS  360 (534)
Q Consensus       351 -~~~~~~~i~~  360 (534)
                       .+..|..+.+
T Consensus       244 a~~~~R~~~~~  254 (713)
T KOG2999|consen  244 APDDKRFEMAK  254 (713)
T ss_pred             CChHHHHHHHH
Confidence             3334444443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.76  E-value=1.5  Score=41.77  Aligned_cols=95  Identities=15%  Similarity=0.067  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHcc
Q 009471          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES  248 (534)
Q Consensus       171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~  248 (534)
                      ...|+..|.-++--.|..+..+.+..++..|+.+|+. ..+.++..++.+|..+--+.+ +...+-+.+|+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            4456667766666677787888888999999999955 458999999988888766554 88888899999999999998


Q ss_pred             C--CHHHHHHHHHHHHHhh
Q 009471          249 G--STVGKEKATISLQRLS  265 (534)
Q Consensus       249 ~--~~~~~~~A~~~L~~Ls  265 (534)
                      .  +.+++-....+|+-.-
T Consensus       188 ~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccHHHhHHHHHHHHHHH
Confidence            5  6667777777776543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=92.72  E-value=4.1  Score=45.61  Aligned_cols=186  Identities=12%  Similarity=0.123  Sum_probs=121.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQL-LTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~l-L~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .+.+-..+.+.+...|.+|+..+...+.... ........|.+..+++. +.+.+..+...|+.+|..++..-..-..=.
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            3445556678899999999999999987544 11111122334444443 344567888899999999987543222223


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-c-hHH
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P-EVR  312 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~-~~~  312 (534)
                      ..++.+.++.-+.+-...+++.+..++.........-.      .++.+..++++++|..+..+...+...... + ...
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~------~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSK------MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHH------HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            45678889999988888888877777766655222111      237778889999999988766666444332 1 111


Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      ..-.-.+.++.++....+.+. +||..+.+++..+..
T Consensus       408 ~~~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK  443 (815)
T ss_pred             chhhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence            111224567777777777776 899999888887765

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.63  E-value=4.8  Score=39.79  Aligned_cols=170  Identities=12%  Similarity=0.110  Sum_probs=106.8

Q ss_pred             chHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hh
Q 009471          154 GNTRELL-ARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CE  230 (534)
Q Consensus       154 ~~i~~Ll-~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~  230 (534)
                      ..+..++ ..+++.++..|..|+..|.-.+--+.+...     ..++.+.+.++.++..++..|+.++..+.....  .-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4555655 677899999999999998887655553322     346778888877789999999999999865322  11


Q ss_pred             H-------HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHH-Hc---cCChHHHHHHH
Q 009471          231 N-------WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI-CQ---TGDSVSQAAAA  299 (534)
Q Consensus       231 ~-------~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~l-l~---~~~~~~~~~a~  299 (534)
                      .       .......+..+...+++.+++++..|+..++.|-.......   ....+..|+-+ ..   .+++.++..-.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            1       12234578888889999999999999999999854322111   00111333322 22   12344554444


Q ss_pred             HHHHHccCCchHHHHHHhhCcHHHHHHHhhcC
Q 009471          300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG  331 (534)
Q Consensus       300 ~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~  331 (534)
                      ..+-..+......+....+..++.+-.+.+..
T Consensus       178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            44555555443334444566677766666543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=16  Score=41.88  Aligned_cols=211  Identities=18%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             CCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHH
Q 009471          249 GSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVM  324 (534)
Q Consensus       249 ~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L  324 (534)
                      .+..+|..+...|..++..++......+  ......|..-+++.....+...+.+|..|-...  +.+..+. .. |+-+
T Consensus       666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~-I~Ev  743 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KL-IPEV  743 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HH-HHHH
Confidence            4778999999999999887433222211  111233344444455566666666666665422  4443332 22 3333


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcC------ChHHHHHhh----cCCchHHHH--HHHHHHhhcCcc
Q 009471          325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG------GIRSLLAYL----DGPLPQESA--VGALRNLVGSVS  392 (534)
Q Consensus       325 ~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g------~l~~L~~~L----~~~~~~~~a--~~aL~~La~~~~  392 (534)
                      +=.+++.+. ..+.++..+|.+|+..     ....+.|      .+..++..+    -++..+..+  +-++..+..+  
T Consensus       744 IL~~Ke~n~-~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--  815 (1176)
T KOG1248|consen  744 ILSLKEVNV-KARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE--  815 (1176)
T ss_pred             HHhcccccH-HHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence            333355554 7899999999999830     0111111      233444433    223333333  3333444331  


Q ss_pred             HHHHHh----cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471          393 QEVLIS----LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (534)
Q Consensus       393 ~~~l~~----~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~  467 (534)
                      ...+++    .+++..+.-+|.++++++...|+..+..++.. ++..-.-.....++.+..+.+.....++......|-.
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK  895 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            112222    34566666677899999999999999998865 4433332233468888888887778888887777776


Q ss_pred             hc
Q 009471          468 LV  469 (534)
Q Consensus       468 L~  469 (534)
                      |.
T Consensus       896 Li  897 (1176)
T KOG1248|consen  896 LI  897 (1176)
T ss_pred             HH
Confidence            65

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.02  E-value=0.86  Score=34.39  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCChhHHHHHHhcC
Q 009471          377 QESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSAEMKKLVGEAG  441 (534)
Q Consensus       377 ~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~~~~~~~i~~~g  441 (534)
                      ...|++++++++. +.....+.+.++++.++++... +...+|-.+..+|.-++++.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            4578899999988 4444555567899999998864 457899999999999999988888887665

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.02  E-value=12  Score=37.65  Aligned_cols=158  Identities=14%  Similarity=0.110  Sum_probs=112.0

Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc-CChHHHHHHHhc--CChHHHHHhhcC------C---------
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA-SNENLRRSVVSE--GGIRSLLAYLDG------P---------  374 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~-~~~~~~~~i~~~--g~l~~L~~~L~~------~---------  374 (534)
                      +.+.+.. +..+...+..... .....++..|..++. ........+++.  -..+.+-+++..      .         
T Consensus        51 ~~iL~~~-~k~lyr~L~~~~~-~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~  128 (330)
T PF11707_consen   51 RSILQNH-LKLLYRSLSSSKP-SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP  128 (330)
T ss_pred             HHHHHHH-HHHHHHHhCcCcH-HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence            3444433 7778888877775 678899999999998 555655566542  123344444421      1         


Q ss_pred             chHHHHHHHHHHhhc---CccHHHHH-hcCcHHHHHHHHhcCCHHHHHHHHHHHHH-hcCC----hhHHHHHHhcCchHH
Q 009471          375 LPQESAVGALRNLVG---SVSQEVLI-SLGFFPRLVHVLKAGSLGAQQAAASALCR-VCTS----AEMKKLVGEAGCTPL  445 (534)
Q Consensus       375 ~~~~~a~~aL~~La~---~~~~~~l~-~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~-la~~----~~~~~~i~~~g~v~~  445 (534)
                      ++|...+..+..+..   +.....++ ..+.+..+++-|...++++....+.++.. +..+    ...+-.+.....+..
T Consensus       129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~  208 (330)
T PF11707_consen  129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ  208 (330)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence            778888888888877   23334444 46678889999988888999999988885 4444    345556666778999


Q ss_pred             HHHhhcCCCh----HHHHHHHHHHHHhcCCC
Q 009471          446 LIKLLEAKPN----SVREVAAQAISSLVTLP  472 (534)
Q Consensus       446 Lv~ll~~~~~----~v~~~A~~aL~~L~~~~  472 (534)
                      |..+....++    .+++.+-+.|..++.++
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence            9998876666    89999999999998664

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=91.96  E-value=4.8  Score=41.89  Aligned_cols=186  Identities=12%  Similarity=0.126  Sum_probs=114.9

Q ss_pred             hHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcC--hHhHHHHhcCCcHHHHHHHh-cCCCHHHHHHHHHHHHHhh----cC
Q 009471          155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKED--EKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVICSLA----ES  226 (534)
Q Consensus       155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~--~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La----~~  226 (534)
                      .+..++.... ..++..+..++..+..++.+-  ++...     ..+..+..-. ...+...+..+..++.-++    ..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R  264 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMR  264 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence            5666666654 445777888888888888652  22111     2233333333 2333455555555554432    22


Q ss_pred             -CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhh--------HHHHHh----CCChHHHHHHHccCCh
Q 009471          227 -GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEM--------ARAIVG----HGGVRPLIEICQTGDS  292 (534)
Q Consensus       227 -~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~--------~~~l~~----~g~i~~Lv~ll~~~~~  292 (534)
                       .+.-.     ..+..|+.++.+  +.+...++..+.-+..+ ++.        .+.+.+    ...+|.|++-.+..+.
T Consensus       265 ~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~  337 (415)
T PF12460_consen  265 GHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD  337 (415)
T ss_pred             CCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence             22211     236777788876  66788889998888776 332        112222    2235667776676666


Q ss_pred             HHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          293 VSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       293 ~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                      ..+..-..+|.++..+-.....+.+ ...+|.+++-|..++. +++..++.+|..+...++.
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~-~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDA-DVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCHH
Confidence            6788888888888774332223333 5688999999987776 7999999999999986644

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.73  E-value=5.7  Score=43.79  Aligned_cols=216  Identities=13%  Similarity=0.108  Sum_probs=127.5

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHH
Q 009471          243 IRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS  322 (534)
Q Consensus       243 v~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~  322 (534)
                      +..+.++...++..+...|..+..+.+.+..+...+.+......+++.|+-+--.|...+..|+..       ..+.+++
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~  805 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILP  805 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence            334445566688889999999988776666777788899999999999998888888866666642       3356677


Q ss_pred             HHHHH-hhcCCC--hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCch--HHHHHHHHHHhhc-Cc--cHH
Q 009471          323 VMIKL-LDCGIL--LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVG-SV--SQE  394 (534)
Q Consensus       323 ~L~~l-l~~~~~--~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~--~~~a~~aL~~La~-~~--~~~  394 (534)
                      .+.+. ......  .+.+...-+++.++...-.+.-.... .-.+...+..+++|+.  |..+++.+++||. ..  ..+
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            77663 322211  13333444666666542222111111 1234455555666654  8899999999997 21  111


Q ss_pred             HHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--hhHHHHHH--hcCchHHHHHhhc-CCChHHHHHHHHHHHHh
Q 009471          395 VLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS--AEMKKLVG--EAGCTPLLIKLLE-AKPNSVREVAAQAISSL  468 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~--~~~~~~i~--~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L  468 (534)
                      .+.  .++..++.+.+ ++++-+++.|+-.+..+-.+  .+.-..+.  .......+..+.. ..+..++..|..++-.+
T Consensus       885 ~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  885 FFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            111  23344444444 45688999999999888764  22222110  1223444444444 34455666666666544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.65  E-value=1.8  Score=39.36  Aligned_cols=77  Identities=17%  Similarity=0.203  Sum_probs=61.9

Q ss_pred             HHHHHhCCChHHHHHHHcc---------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471          271 ARAIVGHGGVRPLIEICQT---------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA  340 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~---------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a  340 (534)
                      ...|++.||+..|+.++..         .+......++.+|+.+.........+.. .+++..++..+.+.+. .++..+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~-~~r~~~  178 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNI-KTRKLA  178 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSH-HHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCH-HHHHHH
Confidence            5578889999999998853         3457788899999999998876777776 8899999999988776 899999


Q ss_pred             HHHHHHHc
Q 009471          341 AECLQNLT  348 (534)
Q Consensus       341 ~~~L~~La  348 (534)
                      +..|..+|
T Consensus       179 leiL~~lc  186 (187)
T PF06371_consen  179 LEILAALC  186 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.52  E-value=24  Score=38.40  Aligned_cols=131  Identities=17%  Similarity=0.075  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc
Q 009471          210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT  289 (534)
Q Consensus       210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~  289 (534)
                      ..+..-+++.+..+-..+..-+  .-.|.+..+++-.++.+..++...+..|..+.........-+-.+....+..-+.+
T Consensus        60 dRIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   60 DRILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence            4555555566655544333222  23456777778888889999999999999987643333333334455777777888


Q ss_pred             CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471          290 GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (534)
Q Consensus       290 ~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~  346 (534)
                      ..|.+|..|+.+|..+-..+..    -+..++..+..+++.++..+||..++.+|.+
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~d----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKD----EECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCC----CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            8999999999999998854311    0234567788888776666888877655443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.37  E-value=23  Score=37.93  Aligned_cols=168  Identities=15%  Similarity=0.170  Sum_probs=94.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhC
Q 009471          242 LIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEG  319 (534)
Q Consensus       242 Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g  319 (534)
                      ++...+ ++...+..|+..+.....+ ++....-     +..++.+|.+.|..+|..|...|..+|.+ ++....+    
T Consensus        28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv----   97 (556)
T PF05918_consen   28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV----   97 (556)
T ss_dssp             HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred             HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence            333333 5788999999999998776 4444432     38999999999999999999999999985 3555554    


Q ss_pred             cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-----CCchHHHHHHHHHHhhc---C-
Q 009471          320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-----GPLPQESAVGALRNLVG---S-  390 (534)
Q Consensus       320 ~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-----~~~~~~~a~~aL~~La~---~-  390 (534)
                       +..|+++|..++. .....+-.+|..+-..++..        .+..++..+.     +..+|+.++..|..=..   . 
T Consensus        98 -aDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   98 -ADVLVQLLQTDDP-VELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             -HHHHHHHTT---H-HHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             -HHHHHHHHhcccH-HHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence             6689999987775 34444555555555433322        2344444332     24478888877754333   1 


Q ss_pred             ccH-HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471          391 VSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (534)
Q Consensus       391 ~~~-~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~  429 (534)
                      ... ..=.+.-++..+.++|.+-..+--.....+|..+-.
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            111 111223345555566655444333444555555544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.21  E-value=2.6  Score=47.06  Aligned_cols=179  Identities=17%  Similarity=0.139  Sum_probs=119.0

Q ss_pred             HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471          283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEG  362 (534)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (534)
                      +-.-+.+.+|.-+..++..++.....+.........|.+..++.....+..-.+...++.+|..|+...... ..-+..+
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~  336 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKN  336 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHh
Confidence            333445678888888888888776644301111114445555555543333367888999999998754332 1223346


Q ss_pred             ChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-h---hHHHH
Q 009471          363 GIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A---EMKKL  436 (534)
Q Consensus       363 ~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~---~~~~~  436 (534)
                      ..+.++..+.+  +.+++.+..++..++....     ...+.+.+..++.+++|.++......+...... .   ..+..
T Consensus       337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t  411 (815)
T KOG1820|consen  337 VFPSLLDRLKEKKSELRDALLKALDAILNSTP-----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET  411 (815)
T ss_pred             hcchHHHHhhhccHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence            67888887765  6677777777766664111     233578888899999999998877666665533 2   33444


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          437 VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       437 i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      +  .+.+|.++....+.+.+||..|.+++.-+.
T Consensus       412 ~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  412 V--KTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             H--HHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            4  567999999999999999999999998885

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.18  E-value=38  Score=40.13  Aligned_cols=141  Identities=15%  Similarity=0.113  Sum_probs=95.1

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHH
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAI  274 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l  274 (534)
                      +.+..++..|..+...+|..|+++|..+.+.++.  .+....+-..+-.-+.+....+|+.|...++... .+++....+
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            4467777788877799999999999999987761  1111222334445566778889999999998754 345554444


Q ss_pred             HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh---cCCChhHHHHHHHHHHHHcc
Q 009471          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~---~~~~~~v~~~a~~~L~~La~  349 (534)
                      .     ..+.+-..+....+|..+...++.++.....-..+     +...+++++   ++.. .++..+..++.++-.
T Consensus       894 Y-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg-~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  894 Y-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEG-NIKKLVRETFLKLWF  960 (1692)
T ss_pred             H-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchh-HHHHHHHHHHHHHhc
Confidence            3     45555566778889999999999998743332333     333444443   3332 378888888888876

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.09  E-value=1.3  Score=47.41  Aligned_cols=111  Identities=16%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHH
Q 009471          399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV  478 (534)
Q Consensus       399 ~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~  478 (534)
                      .+++..+++-..+++..|+...+..|..+.....-...-.-.+....|..-+.+..+.||..|..+|+.+=.++.+    
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----  159 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----  159 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----
Confidence            3455666666678889999999999999986422222222234566666677788899999999999999544444    


Q ss_pred             HhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          479 KRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       479 ~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                       .+...+..++.+++.+|+.++|..+...+..=.+.
T Consensus       160 -ee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsT  194 (892)
T KOG2025|consen  160 -EECPVVNLLKDLIQNDPSDEVRRAALSNISVDNST  194 (892)
T ss_pred             -CcccHHHHHHHHHhcCCcHHHHHHHHHhhccCccc
Confidence             22345677888999888888988877666544433

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.87  E-value=23  Score=37.52  Aligned_cols=150  Identities=17%  Similarity=0.130  Sum_probs=93.0

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh-hcC--CchHHHHHHHHHHhhcCccHHHHHhcC
Q 009471          324 MIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVGSVSQEVLISLG  400 (534)
Q Consensus       324 L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~  400 (534)
                      +-+++.+.++ -.|.+.+..+..--.+..       +.+++..++.+ +.+  ++++..|+.+|+-+|..       +..
T Consensus       521 I~ell~d~ds-~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-------D~~  585 (926)
T COG5116         521 INELLYDKDS-ILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-------DRD  585 (926)
T ss_pred             HHHHhcCchH-HhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEec-------Ccc
Confidence            3344555554 456665554443111111       23556777776 443  78999999999999873       233


Q ss_pred             cHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC-CCcchHHH
Q 009471          401 FFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREV  478 (534)
Q Consensus       401 ~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~  478 (534)
                      .++..+++| .+.++.|+...+.+|+-.|.+...+      -++..|-.++++...-+|..|+.++.-+.. +.+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            566677777 5678899999999998777552211      135566677888888899999999988763 22222222


Q ss_pred             HhhCCCHHHHHhhcCCCC
Q 009471          479 KRDDKSVPNLVQLLDPSP  496 (534)
Q Consensus       479 ~~~~~~v~~Lv~lL~~~~  496 (534)
                      +.  +....+.+.+....
T Consensus       660 v~--~I~k~f~~vI~~Kh  675 (926)
T COG5116         660 VK--RIIKKFNRVIVDKH  675 (926)
T ss_pred             HH--HHHHHHHHHHhhhh
Confidence            22  34455666665553

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=90.74  E-value=1.1  Score=41.87  Aligned_cols=82  Identities=20%  Similarity=0.267  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHhhc-CccHHHHHhcCc-------HHHHHHHH-hcCCHHHHHHHHHHHHHhcCC-hhHHHHH-HhcCchH
Q 009471          376 PQESAVGALRNLVG-SVSQEVLISLGF-------FPRLVHVL-KAGSLGAQQAAASALCRVCTS-AEMKKLV-GEAGCTP  444 (534)
Q Consensus       376 ~~~~a~~aL~~La~-~~~~~~l~~~~~-------i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~-~~~~~~i-~~~g~v~  444 (534)
                      .|..|+.+|..|+- ..+.+.++.++-       +..|++++ ..+++..++.|...|.+|+.. +...+.+ .+.++|.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            58999999999998 666665655443       44455555 356788999999999999976 5555455 5568999


Q ss_pred             HHHHhhcCCChHH
Q 009471          445 LLIKLLEAKPNSV  457 (534)
Q Consensus       445 ~Lv~ll~~~~~~v  457 (534)
                      .|+.++++.....
T Consensus       220 ~Li~FiE~a~~~~  232 (257)
T PF12031_consen  220 HLIAFIEDAEQNA  232 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998554433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.46  E-value=2.9  Score=40.63  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (534)
                      ...+...+..|.+.+.+.+..++..+..|....++....... ..+-.+++-++.....+-..|+.++..+...-..  .
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~  163 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S  163 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence            345677888899999999999999999998766654443332 4566777778888888999999999888765432  1


Q ss_pred             HHhcCCHHHHHH-HHcc---CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471          233 LVSEGVLPPLIR-LVES---GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (534)
Q Consensus       233 l~~~g~i~~Lv~-lL~~---~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (534)
                      +.+  -+..++. ++..   .+..+++.|-.+|..|..+-.....+      +.|...+++..+.++..++.+..+.
T Consensus       164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L------~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLL------RKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHH------HHHHHHHhhhchhhhhhhhcccccc
Confidence            111  2344443 3333   36678999999999998765544444      6777778888888888877766554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.44  E-value=35  Score=38.50  Aligned_cols=348  Identities=12%  Similarity=0.088  Sum_probs=176.4

Q ss_pred             CHHHHHHHHHHHHHHh---hcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHH
Q 009471          167 HLEAKHKALDSLVEAM---KEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPL  242 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~---~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~L  242 (534)
                      ++..+.-|+..+.+++   .....++ ...+.=.++.+...++++-..+|..|++++..++.-+ +....+  ..++...
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t  507 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT  507 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence            4555666777666654   3333332 2222233666666778888899999999999999533 222222  2346666


Q ss_pred             HHHHc-cCCHHHHHHHHHHHHHhhcChhhH-HHHHh--CCChHHHHHHHccCChHHHHHHHHHH-HHccCCchHHHHHHh
Q 009471          243 IRLVE-SGSTVGKEKATISLQRLSMSAEMA-RAIVG--HGGVRPLIEICQTGDSVSQAAAACTL-KNISAVPEVRQMLAE  317 (534)
Q Consensus       243 v~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~-~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL-~nLa~~~~~~~~i~e  317 (534)
                      .+.|. +.+..++..|+-+|..+-.+.+.. ..+..  .+.++.|+.+.+.-+.+....+...+ +..+.  +....-.+
T Consensus       508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fse--ElsPfA~e  585 (1010)
T KOG1991|consen  508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSE--ELSPFAVE  585 (1010)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--hhchhHHH
Confidence            66666 678889999999999987765543 33433  34456666666654444333333322 12221  22111111


Q ss_pred             --hCcHHHHHHHhhc--CC---ChhHHHHHHHHHHHHcc------CChHHHHHHHhcCChHHHHHhhcC--CchHHHHHH
Q 009471          318 --EGIVSVMIKLLDC--GI---LLGSKEYAAECLQNLTA------SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVG  382 (534)
Q Consensus       318 --~g~i~~L~~ll~~--~~---~~~v~~~a~~~L~~La~------~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~  382 (534)
                        ......+.+++..  +.   +.+-...|.++|..+.+      ..+..-+. .+...++.+-.++++  .+.-+.++.
T Consensus       586 L~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~e  664 (1010)
T KOG1991|consen  586 LCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLE  664 (1010)
T ss_pred             HHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence              2334455566652  11   11334556666666554      11111100 112223334444444  456677777


Q ss_pred             HHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH-HHhcCchHHHHHhhcCC--Ch
Q 009471          383 ALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL-VGEAGCTPLLIKLLEAK--PN  455 (534)
Q Consensus       383 aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~-i~~~g~v~~Lv~ll~~~--~~  455 (534)
                      ...+++.  ++....+.  +..+.+.+.++....+--...+-+|.|+...  +...+. ....-......+++.+.  ..
T Consensus       665 i~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D  742 (1010)
T KOG1991|consen  665 IVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGED  742 (1010)
T ss_pred             HHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCch
Confidence            7777765  22222222  3466677777666667777788888887643  211111 00011233344444442  23


Q ss_pred             HHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHH-----hhcCCCCchhHHHHHHHHHH-hhchhHHHHHHHHhhccc
Q 009471          456 SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLV-----QLLDPSPQNTAKKYAVACLA-SLSPSARKLLERLERGRL  527 (534)
Q Consensus       456 ~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv-----~lL~~~~~~~~k~~a~~~L~-~L~~~~k~~~~~l~~~~~  527 (534)
                      .-.+.|+..+-.+...-.+.   +.  ..++..+     ++.........+.+++.+.. +|--..+..+.-|.+-.+
T Consensus       743 ~d~~~a~kLle~iiL~~kg~---~d--q~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~  815 (1010)
T KOG1991|consen  743 SDCESACKLLEVIILNCKGL---LD--QYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGF  815 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhcCc---Hh--hHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence            33456777777776443331   10  0123222     22332223356666665443 344445555555554433

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=90.02  E-value=47  Score=39.46  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=92.5

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN  231 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~  231 (534)
                      ..++..++..|.......|.+|+++|..+...++..   +.....-.....-+.++...||+.|+..++...... +.-.
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            345666677777777888999999999999887732   222233333444455667899999999999775543 3222


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc---cCChHHHHHHHHHHHHccC
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ---TGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~---~~~~~~~~~a~~aL~nLa~  307 (534)
                      +.     ...+..-+.+....+|.++...++.++...+.-..+.     ...+++++   ++...++..++.++.++=.
T Consensus       892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            22     4455555566778899999999999987654433332     33444443   3333367777777766643

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.00  E-value=4.5  Score=46.09  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             cHHHHHHHhcC----CCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhh
Q 009471          197 NIAALVQLLTA----TSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEM  270 (534)
Q Consensus       197 ~v~~Lv~lL~~----~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~  270 (534)
                      ..|.+++.++.    ++|++|..|.-+|+.+..-+ ....     .-++.|+.+|+ ++++.++..+..+++.|+...++
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            46777777754    46999999999999986543 2222     23899999998 67899999999999999875444


Q ss_pred             H-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471          271 A-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (534)
Q Consensus       271 ~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La  348 (534)
                      - ...     -+.|...+++.++.+|..|..+|.+|-.++     |+. .|.+..+...+.+++. +++.-|-.....|+
T Consensus       995 lie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~-~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 LIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNA-EISDLAKSFFKELS 1063 (1251)
T ss_pred             ccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcH-HHHHHHHHHHHHhh
Confidence            2 222     267788899999999999999999987643     333 7889999999998887 78877776666666


Q ss_pred             c
Q 009471          349 A  349 (534)
Q Consensus       349 ~  349 (534)
                      .
T Consensus      1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred             h
Confidence            5

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=89.60  E-value=4.4  Score=44.97  Aligned_cols=139  Identities=21%  Similarity=0.263  Sum_probs=93.1

Q ss_pred             CChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHh--cCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-----hh
Q 009471          362 GGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLIS--LGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-----AE  432 (534)
Q Consensus       362 g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~--~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-----~~  432 (534)
                      ..+|.+++.+..  ...+..-+.+|.+.-.+.-.+.+..  ...+|.|++.|.-.|..+|..+..++.-+...     .+
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~  946 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE  946 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence            457777776654  3456666777777766222233322  34578888888999999999988888776532     33


Q ss_pred             HHHHHHhcCchHHHHHhhcCCC---hHHHHHHHHHHHHhcC-CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHH
Q 009471          433 MKKLVGEAGCTPLLIKLLEAKP---NSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVAC  507 (534)
Q Consensus       433 ~~~~i~~~g~v~~Lv~ll~~~~---~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~  507 (534)
                      +...     .+|.+..+-.+.+   ..+|+.|..+|..|.. .|.+.-...+ ...+..|...|++. ...+|+.|+.+
T Consensus       947 ~~~T-----lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen  947 HLST-----LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred             HHhH-----HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcH-HHHHHHHHHHH
Confidence            4433     4888888877555   5689999999999987 4555444444 35667777888775 33577777654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=89.50  E-value=1.3  Score=48.88  Aligned_cols=147  Identities=20%  Similarity=0.154  Sum_probs=100.7

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .+|.+++...+.+...|..=+..|.+++..-|.....---....|.|++.|+-+|..+|-.+..++..+....+.-..--
T Consensus       868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~  947 (1030)
T KOG1967|consen  868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH  947 (1030)
T ss_pred             hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence            45666666666666777777888888887666532111112568888889999999999999999988766554211111


Q ss_pred             hcCCHHHHHHHHccCC---HHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          235 SEGVLPPLIRLVESGS---TVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                      -.-.+|.++.+=.+.+   +.+++.|..+|..|+.. |.+.-.-....+++.|...|.++..-+|..|..+
T Consensus       948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            1235666666666654   67899999999999984 4443344445667888888888777777777655

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.09  E-value=3.1  Score=47.31  Aligned_cols=136  Identities=17%  Similarity=0.198  Sum_probs=101.8

Q ss_pred             hHHHHHHHc----cCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471          280 VRPLIEICQ----TGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (534)
Q Consensus       280 i~~Lv~ll~----~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~  354 (534)
                      .|.+++.|+    .++|+++.+|.-+|+.+..-+ +.+.     .-++.|+..++..+.+.+|-+++-+++.++...+..
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            466667774    358999999999999887633 3333     248889999974444478999999999999877654


Q ss_pred             HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      -+.     .-+.|...|.+  +.+|..|+-+|.+|..+   ..+--.|.++.+..+|.++++.++..|-.....|+
T Consensus       996 ie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  996 IEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            332     24567777766  67899999999999874   33445688999999999999999888885555554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=88.98  E-value=6.8  Score=42.48  Aligned_cols=160  Identities=14%  Similarity=0.071  Sum_probs=103.7

Q ss_pred             HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHH-hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc
Q 009471          283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKL-LDCGILLGSKEYAAECLQNLTASNENLRRSVVSE  361 (534)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~l-l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~  361 (534)
                      +-+++.+.||-+|....-++.---.+.      ...++|..|++. +.+.++ +|+..|+.+|+-++..+++.       
T Consensus       524 I~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nD-DVrRaAVialGFVl~~dp~~-------  589 (929)
T KOG2062|consen  524 IKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVND-DVRRAAVIALGFVLFRDPEQ-------  589 (929)
T ss_pred             HHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccch-HHHHHHHHHheeeEecChhh-------
Confidence            346677778888876655543211111      124567777777 456666 89999999999999877765       


Q ss_pred             CChHHHHHhhc---CCchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhHHH
Q 009471          362 GGIRSLLAYLD---GPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC--TSAEMKK  435 (534)
Q Consensus       362 g~l~~L~~~L~---~~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la--~~~~~~~  435 (534)
                        .+..+.+|.   +|.+|..+..+|+-.|. ....+      .+..|-.+..+...-|++-|+.++.-+.  +++....
T Consensus       590 --~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p  661 (929)
T KOG2062|consen  590 --LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP  661 (929)
T ss_pred             --chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence              456666663   38899999999999987 33332      1333334445556678999988888765  2344444


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471          436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (534)
Q Consensus       436 ~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~  466 (534)
                      .+  .++.+.+.+.+.+++++....--.+|.
T Consensus       662 kv--~~frk~l~kvI~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  662 KV--NGFRKQLEKVINDKHEDGMAKFGAILA  690 (929)
T ss_pred             hH--HHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            44  466778888888777665444333333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.53  E-value=4.3  Score=42.76  Aligned_cols=128  Identities=15%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             CCchHHHHHHHHHHhhc---CccHH-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHH
Q 009471          373 GPLPQESAVGALRNLVG---SVSQE-VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIK  448 (534)
Q Consensus       373 ~~~~~~~a~~aL~~La~---~~~~~-~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~  448 (534)
                      ++..-...+..+..+..   +..++ .=.-.+++..+++-+.+++..|+...+.+|+.+.....-.....-.|.+..|.+
T Consensus        60 ~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~  139 (885)
T COG5218          60 NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSE  139 (885)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            35555555555555443   22222 111245667777777888999999999999998855222222333466777777


Q ss_pred             hhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHH
Q 009471          449 LLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAV  505 (534)
Q Consensus       449 ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~  505 (534)
                      -+.+..+.+|..|..+|+++-....|-+..+     +..|+.+++.+|+.+++..|.
T Consensus       140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~al  191 (885)
T COG5218         140 RLFDREKAVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLAL  191 (885)
T ss_pred             HHhcchHHHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHH
Confidence            7778889999999999999976566644433     346778888887777877654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=88.45  E-value=5.2  Score=43.27  Aligned_cols=224  Identities=17%  Similarity=0.133  Sum_probs=124.4

Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV  246 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL  246 (534)
                      |+..|..-+..|.++..+-|.   .+.-....|.|+..+...  .+.-..+-.+..++...+.  ..+....++.|..++
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp~---rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~--~~~~~~~~p~l~pi~  358 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFPA---RVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQ--NEFGPKMLPALKPIY  358 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCCH---HHHHHhhhhHHHHHhccc--cccccccchhhhhhhccch--hhhhhhhhHHHHHHh
Confidence            444555555555555544332   222335566666655332  1222222223333332221  112234577777777


Q ss_pred             ccCCHHHHHHHHHHHHHh------hcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCc
Q 009471          247 ESGSTVGKEKATISLQRL------SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGI  320 (534)
Q Consensus       247 ~~~~~~~~~~A~~~L~~L------s~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~  320 (534)
                      +..++  ++.-+.++.++      ...++....     +++.|..-+.+.+..+|..++..+-.++..-+  ...+..-+
T Consensus       359 ~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~-----IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~i  429 (700)
T KOG2137|consen  359 SASDP--KQALLFILENMDLLKEKTPPEEVKEK-----ILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAI  429 (700)
T ss_pred             ccCCc--ccchhhHHhhHHHHHhhCChHHHHHH-----HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHH
Confidence            74211  22222333333      222333333     35788888888899999999999988876433  34455667


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh-----cCCchHHHHHHHHHHhhc-CccHH
Q 009471          321 VSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-----DGPLPQESAVGALRNLVG-SVSQE  394 (534)
Q Consensus       321 i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L-----~~~~~~~~a~~aL~~La~-~~~~~  394 (534)
                      +|.+.++....+...++.+++.|+..+..       .+-...+++.+..++     .+|.+.-..+.+..++.. .....
T Consensus       430 lP~l~~l~~~tt~~~vkvn~L~c~~~l~q-------~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~  502 (700)
T KOG2137|consen  430 LPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-------RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGV  502 (700)
T ss_pred             HHHhhcchhcccchHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccce
Confidence            88888886555555889999999999883       222333344444443     236667777777777766 22223


Q ss_pred             HHHhcCcHHHHHHHHhcCC
Q 009471          395 VLISLGFFPRLVHVLKAGS  413 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~~~  413 (534)
                      .++.+.++|.++.+...+.
T Consensus       503 ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  503 EVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             eeehhhhhhhhhhhhhccc
Confidence            4555667777777765554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.24  E-value=5  Score=44.49  Aligned_cols=179  Identities=12%  Similarity=0.077  Sum_probs=111.0

Q ss_pred             HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHH--HHHHHHccCCH-H
Q 009471          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLP--PLIRLVESGST-V  252 (534)
Q Consensus       177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~--~Lv~lL~~~~~-~  252 (534)
                      .|.....+++++.+.+++.||+..+.+.++.-+ .+++..++..+.+++...+.+..+....-+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            677888899999999999999999999998654 7899999999999998776443332222222  33334444333 6


Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHH-HHHHhhcC
Q 009471          253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSV-MIKLLDCG  331 (534)
Q Consensus       253 ~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~-L~~ll~~~  331 (534)
                      .-..++..|..+..+.+.   ....+.           -+.+...-..++..   .+.....+.-...+.. +..++...
T Consensus       574 rsY~~~siLa~ll~~~~~---~~~~~~-----------r~~~~~~l~e~i~~---~~~~~~~~~~~~~f~~~~~~il~~s  636 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEK---TTECVF-----------RNSVNELLVEAISR---WLTSEIRVINDRSFFPRILRILRLS  636 (699)
T ss_pred             HHHHHHHHHHHHHhCCCc---Cccccc-----------hHHHHHHHHHHhhc---cCccceeehhhhhcchhHHHHhccc
Confidence            677788888777665332   000000           01111111111111   1111111111222223 55566544


Q ss_pred             CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc
Q 009471          332 ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD  372 (534)
Q Consensus       332 ~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~  372 (534)
                      .....+..|++++.+++..++.+...+.+.++++.+.+.-.
T Consensus       637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence            43378999999999999988888888888888888776643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=87.68  E-value=2  Score=47.14  Aligned_cols=163  Identities=16%  Similarity=0.219  Sum_probs=107.8

Q ss_pred             hhHHHHHhCCChHHHHHHHccC--------ChHHHHHHHHHHHHccCCchHHHHHHhh------C--cHHHHHHHhh---
Q 009471          269 EMARAIVGHGGVRPLIEICQTG--------DSVSQAAAACTLKNISAVPEVRQMLAEE------G--IVSVMIKLLD---  329 (534)
Q Consensus       269 ~~~~~l~~~g~i~~Lv~ll~~~--------~~~~~~~a~~aL~nLa~~~~~~~~i~e~------g--~i~~L~~ll~---  329 (534)
                      +.+..+.+.+++..++.++...        -.++..+|+.+|.-+...|+++..++..      .  ++..+++.-.   
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~  671 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSN  671 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence            3456678899999999998753        2356688999999999999998888652      1  3444444432   


Q ss_pred             cCCChhHHHHHHHHHHHHccCChHHHHHHHhcC----ChHHHHHhhc-C--CchHHHHHHHHHHhhcCccHHHHHhcCcH
Q 009471          330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEG----GIRSLLAYLD-G--PLPQESAVGALRNLVGSVSQEVLISLGFF  402 (534)
Q Consensus       330 ~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g----~l~~L~~~L~-~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i  402 (534)
                      +..+++++..|+.+|.|+....+.+|...+..-    +-+..  .+. +  ....++.+.-+|        ..+....+|
T Consensus       672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l~~mw--------~~Vr~ndGI  741 (1516)
T KOG1832|consen  672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVLRQMW--------EAVRGNDGI  741 (1516)
T ss_pred             cccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHHHHHH--------HHHhcCccH
Confidence            222348899999999999987767664443210    00000  010 0  111233333333        334457789


Q ss_pred             HHHHHHHhcCCH-----HHHHHHHHHHHHhcCChhHHHHHHhcC
Q 009471          403 PRLVHVLKAGSL-----GAQQAAASALCRVCTSAEMKKLVGEAG  441 (534)
Q Consensus       403 ~~Lv~lL~~~~~-----~v~~~A~~aL~~la~~~~~~~~i~~~g  441 (534)
                      ..|+++|+...|     .++..|+.+|.-|+++++.++.+....
T Consensus       742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp  785 (1516)
T KOG1832|consen  742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP  785 (1516)
T ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence            999999986653     789999999999999999998885544

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.90  E-value=1.9  Score=40.31  Aligned_cols=82  Identities=21%  Similarity=0.322  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHhcC-------CHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhh-HHHHH-hCCCh
Q 009471          211 RIREKTVTVICSLAESGSCENWLVSEG-------VLPPLIRLVES-GSTVGKEKATISLQRLSMSAEM-ARAIV-GHGGV  280 (534)
Q Consensus       211 ~v~~~A~~~L~~La~~~~~~~~l~~~g-------~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~-~~~l~-~~g~i  280 (534)
                      .-|..|+++|++|+-.+.|.+.+...+       .+..|++++.. ++...++.|...|.+|+..++. ++.++ +.+.|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            458999999999998887776666554       46667777765 4788999999999999987665 44555 48889


Q ss_pred             HHHHHHHccCCh
Q 009471          281 RPLIEICQTGDS  292 (534)
Q Consensus       281 ~~Lv~ll~~~~~  292 (534)
                      ..|+.++.+.+.
T Consensus       219 ~~Li~FiE~a~~  230 (257)
T PF12031_consen  219 SHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999876433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=86.57  E-value=34  Score=33.53  Aligned_cols=217  Identities=15%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH---HHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471          272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV---RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (534)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~---~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~  345 (534)
                      ..+...|....|+..+...+.+.+..+..+..|+-... +.   .....+  ...+..++.--.. .. ++-..+-..+.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~-~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TP-EIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-ch-HHHHHHHHHHH
Confidence            34667888899999999888888988888887776532 22   222222  3334444333111 22 45555555566


Q ss_pred             HHccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHhc---Cc-HHHHHHHHhcCCHHHH
Q 009471          346 NLTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLISL---GF-FPRLVHVLKAGSLGAQ  417 (534)
Q Consensus       346 ~La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~~---~~-i~~Lv~lL~~~~~~v~  417 (534)
                      .... .+...+.+....-......+++-|  ++...|..+...+.. . ....++...   .+ .+.--.++++++.-.+
T Consensus       151 Ecir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  151 ECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence            6554 566666777777777777777654  345556666666554 1 122223222   22 3335667889999999


Q ss_pred             HHHHHHHHHhcCC----hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcch---HHHHhhCCCHHHHHh
Q 009471          418 QAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQ  490 (534)
Q Consensus       418 ~~A~~aL~~la~~----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~---~~~~~~~~~v~~Lv~  490 (534)
                      ..+...++.+-.+    ....+++.+..-++.++.+|+.++..+|-.|-........++.-.   ..+..  ..=+.|+.
T Consensus       230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~--~Nr~KLl~  307 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILV--RNRPKLLE  307 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHH--hCcHHHHH
Confidence            9999999998754    345566665577999999999999999999999998887654322   22222  23355665


Q ss_pred             hcC
Q 009471          491 LLD  493 (534)
Q Consensus       491 lL~  493 (534)
                      +++
T Consensus       308 ~l~  310 (342)
T KOG1566|consen  308 LLH  310 (342)
T ss_pred             HHH
Confidence            553

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.19  E-value=6.5  Score=35.03  Aligned_cols=114  Identities=15%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCC--cHHHHHHHhcCCC-HHHHHHHHHHHHHhhc
Q 009471          149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRS--NIAALVQLLTATS-PRIREKTVTVICSLAE  225 (534)
Q Consensus       149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g--~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~  225 (534)
                      ......++..+...|++.+.+.|-.++.-+...+..++.  ..+.+.+  -+..++..|+.++ +.+.+.++.+|..+..
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~   97 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD   97 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            455666778888888999999998888777777765532  2333333  3888899998876 6788888888887754


Q ss_pred             C----CchhHHHHhc---CCHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009471          226 S----GSCENWLVSE---GVLPPLIRLVESGSTVGKEKATISLQRLSM  266 (534)
Q Consensus       226 ~----~~~~~~l~~~---g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~  266 (534)
                      .    ++..+.+...   +.++.++.++++  ....+.+..+|..+-.
T Consensus        98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen   98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            3    2333333333   345555566654  4456667777776643

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.63  E-value=5.5  Score=36.86  Aligned_cols=151  Identities=15%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC-----ChHHHHHHHHHHHHccCCc--hHHHHHHhhCcHHHHHHH
Q 009471          255 EKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG-----DSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKL  327 (534)
Q Consensus       255 ~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~-----~~~~~~~a~~aL~nLa~~~--~~~~~i~e~g~i~~L~~l  327 (534)
                      ..|...|.-++.+++.+..|.+...--.+..++...     -.-.|..+++++..|..++  +....+....++|.++++
T Consensus       118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            466777888889999998888765533333444322     2346778999999998855  667777778999999999


Q ss_pred             hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHH-
Q 009471          328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLV-  406 (534)
Q Consensus       328 l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv-  406 (534)
                      ++.++. -.+.-++.++..+-.++...+                       .+|.++..+..       + ..++..++ 
T Consensus       198 me~gSE-lSktvaifI~qkil~dDvGLq-----------------------YiCqT~eRFyA-------v-~~vln~mv~  245 (315)
T COG5209         198 MELGSE-LSKTVAIFIFQKILGDDVGLQ-----------------------YICQTFERFYA-------V-NLVLNSMVS  245 (315)
T ss_pred             HHhhhH-HHHHHHHHHHHHHhccchhHH-----------------------HHHHHHHHHHH-------H-HHHHHHHHH
Confidence            998886 567777777777665433321                       12222222211       0 01112222 


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhcCChhHHHHH
Q 009471          407 HVLKAGSLGAQQAAASALCRVCTSAEMKKLV  437 (534)
Q Consensus       407 ~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i  437 (534)
                      ++...+...+.+.+.++-.+++..++.|..+
T Consensus       246 qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL  276 (315)
T COG5209         246 QLVSLGSTRLLKHAIRCYLRLSDKPHARALL  276 (315)
T ss_pred             HHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence            2334556667777777777777776666655

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=85.29  E-value=3.7  Score=35.70  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHHHhcCC
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~  471 (534)
                      .+..|.+-|.++++.++..|+..|-.+..+  ..+...+...+++..|++++.. .+..|+..++..+...+..
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            466777778899999999999999999965  7788999999999999999986 7899999999999988733

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.80  E-value=2.1  Score=41.48  Aligned_cols=159  Identities=18%  Similarity=0.146  Sum_probs=96.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcC--CHHHHHHHHcc----CCHHHHHHHHHHHHHhhcChhhH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEG--VLPPLIRLVES----GSTVGKEKATISLQRLSMSAEMA  271 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g--~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~~~~~~  271 (534)
                      ...+...+..=..+-+--++..++-++.+++....+...+  +...+..++..    .++..+-.+.+++.|+..++..+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            3444444443333446666777777777766555554443  35555555544    36677889999999999988888


Q ss_pred             HHHHhCC--ChHHHHHHHccC----ChHHHHHHHHHHHHccCCc-hHH-HHHHhhCcHHHHHHHh-hcCCChhHHHHHHH
Q 009471          272 RAIVGHG--GVRPLIEICQTG----DSVSQAAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLL-DCGILLGSKEYAAE  342 (534)
Q Consensus       272 ~~l~~~g--~i~~Lv~ll~~~----~~~~~~~a~~aL~nLa~~~-~~~-~~i~e~g~i~~L~~ll-~~~~~~~v~~~a~~  342 (534)
                      ..+..+.  .+...+..+...    +..++..++..+.|++..- ..+ ..-.....+..+.+.+ ....+.++.+.++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            7776643  344444444443    6778889999999998521 111 0001122355566633 33244589999999


Q ss_pred             HHHHHccCChHHHH
Q 009471          343 CLQNLTASNENLRR  356 (534)
Q Consensus       343 ~L~~La~~~~~~~~  356 (534)
                      +|+++...++....
T Consensus       225 AlGtL~~~~~~~~~  238 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQ  238 (268)
T ss_dssp             HHHHHHCCSHHHHH
T ss_pred             HHHHHhccChhHHH
Confidence            99999976655543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=84.70  E-value=41  Score=36.56  Aligned_cols=139  Identities=14%  Similarity=0.074  Sum_probs=98.1

Q ss_pred             HHHHHHHhcC----CCHHHHHHHHHHHHHhh-cCCchhHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhh-
Q 009471          198 IAALVQLLTA----TSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEM-  270 (534)
Q Consensus       198 v~~Lv~lL~~----~~~~v~~~A~~~L~~La-~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~-  270 (534)
                      -|...+...+    +|+.++..|.-.|..+- -+.+..     ..-+|.++..++ +++|.++..|...|..++....+ 
T Consensus       894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~  968 (1128)
T COG5098         894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT  968 (1128)
T ss_pred             hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence            3344445544    57899999888887773 333322     123799999998 67889999999888887643222 


Q ss_pred             HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471          271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~  350 (534)
                      ....     -..|.+-+.+.+..++..|..++.+|--...    +.-.|-++.+..+|.+++. ++...|-..+..++..
T Consensus       969 ~de~-----t~yLyrrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda-~Isdmar~fft~~a~K 1038 (1128)
T COG5098         969 ADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDA-EISDMARHFFTQIAKK 1038 (1128)
T ss_pred             hHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcc-hHHHHHHHHHHHHHhc
Confidence            2222     2566777888999999999999988754321    1126778889999998887 7888898888888874


Q ss_pred             C
Q 009471          351 N  351 (534)
Q Consensus       351 ~  351 (534)
                      +
T Consensus      1039 d 1039 (1128)
T COG5098        1039 D 1039 (1128)
T ss_pred             c
Confidence            3

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=84.69  E-value=14  Score=39.94  Aligned_cols=253  Identities=12%  Similarity=0.123  Sum_probs=147.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCC
Q 009471          159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV  238 (534)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~  238 (534)
                      .+..++..+.+.|.+=...|.+-+..-+   ..++....++.|+..+..++  --...+.-+..+...-+..+  .+.++
T Consensus       259 fLeel~lks~~eK~~Ff~~L~~~l~~~p---e~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i  331 (690)
T KOG1243|consen  259 FLEELRLKSVEEKQKFFSGLIDRLDNFP---EEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI  331 (690)
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence            3444566677777776666666444333   23344455666766665554  11111222222222111111  45678


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhh
Q 009471          239 LPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE  318 (534)
Q Consensus       239 i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~  318 (534)
                      ++.|+++.+..+..+|-.-..-+.+...+  --..+...-.++.+..-+.+.++.+|...+.++..|+.-=.  ..-...
T Consensus       332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--~~~Ln~  407 (690)
T KOG1243|consen  332 IPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--KRNLNG  407 (690)
T ss_pred             hhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--hhhhcH
Confidence            99999999999888775444333332221  12334455667888888899999999999888877764111  111122


Q ss_pred             CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHH
Q 009471          319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEV  395 (534)
Q Consensus       319 g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~  395 (534)
                      ..+..+..+-.+.+. .++.+..-||+.++... +..|    +.-.+..+.+.+++  ...|..++.++......-. ..
T Consensus       408 Ellr~~ar~q~d~~~-~irtntticlgki~~~l~~~~R----~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~-~~  481 (690)
T KOG1243|consen  408 ELLRYLARLQPDEHG-GIRTNTTICLGKIAPHLAASVR----KRVLASAFTRALKDPFVPARKAGVLALAATQEYFD-QS  481 (690)
T ss_pred             HHHHHHHhhCccccC-cccccceeeecccccccchhhh----ccccchhhhhhhcCCCCCchhhhhHHHhhcccccc-hh
Confidence            234555555444554 68888888888888753 2222    22223445555666  4567777777776665211 11


Q ss_pred             HHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          396 LISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       396 l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      =+...+++.+.-+.-+.+..++..|-.++..+-
T Consensus       482 ~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  482 EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            123456777777777778888888877776654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=84.66  E-value=68  Score=35.30  Aligned_cols=304  Identities=15%  Similarity=0.145  Sum_probs=159.7

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC--------CCHHHHHHHHHHHHHhhc
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA--------TSPRIREKTVTVICSLAE  225 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~--------~~~~v~~~A~~~L~~La~  225 (534)
                      .+++..+..-..|..... .|+..+.......++.  .+  .|.++.++..|..        .++.-.+-|++.+.++..
T Consensus       371 eyirry~df~d~g~spdl-aal~fl~~~~sKrke~--Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s  445 (970)
T COG5656         371 EYIRRYYDFFDNGLSPDL-AALFFLIISKSKRKEE--TF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS  445 (970)
T ss_pred             HHHHHhcchhcCCCChhH-HHHHHHHHHhcccchh--hh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH
Confidence            455655555555543322 3344444443332221  12  2788999998832        124455677777777765


Q ss_pred             --CC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          226 --SG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       226 --~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                        .. +-..-+.+.=+++.++..+++....++.+||..+..+..+ +++....   .+.+.....+++++-.++..|+-+
T Consensus       446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill---~aye~t~ncl~nn~lpv~ieAalA  522 (970)
T COG5656         446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILL---EAYENTHNCLKNNHLPVMIEAALA  522 (970)
T ss_pred             HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHH---HHHHHHHHHHhcCCcchhhhHHHH
Confidence              22 2222333444677777888898899999999999999654 2322221   223455566777888888888888


Q ss_pred             HHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHHHHHHH--hcCChHHHHHh----hc
Q 009471          302 LKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENLRRSVV--SEGGIRSLLAY----LD  372 (534)
Q Consensus       302 L~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~~~~i~--~~g~l~~L~~~----L~  372 (534)
                      |.-+-.+.+....+.+  .+.++.++.+-..-+. ++...+   +-.+.... ++......  -...+++.+++    ++
T Consensus       523 lq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei-D~LS~v---Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~e  598 (970)
T COG5656         523 LQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI-DPLSMV---MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLE  598 (970)
T ss_pred             HHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc-hHHHHH---HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHc
Confidence            8877776666666654  3334444444332222 222222   22222211 11110000  01122333333    22


Q ss_pred             C--------CchHHHHHHHHHHhhc----CccHHHH---HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHH
Q 009471          373 G--------PLPQESAVGALRNLVG----SVSQEVL---ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKL  436 (534)
Q Consensus       373 ~--------~~~~~~a~~aL~~La~----~~~~~~l---~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~  436 (534)
                      +        ++-+..|.+.|..+.+    -++...+   .+....|.+--.+.+.-.+.-.+|+..+-+..-. .+.-..
T Consensus       599 ns~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi  678 (970)
T COG5656         599 NSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI  678 (970)
T ss_pred             CCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh
Confidence            2        2236677888877765    1222222   2334455555555666677888888877776533 222222


Q ss_pred             HHhcCchHHHHHhhcCCC-hHHHHHHHHHHHHhcCC
Q 009471          437 VGEAGCTPLLIKLLEAKP-NSVREVAAQAISSLVTL  471 (534)
Q Consensus       437 i~~~g~v~~Lv~ll~~~~-~~v~~~A~~aL~~L~~~  471 (534)
                      +  -|..+.+.+++.+.. ..--+.++.++.++...
T Consensus       679 m--wgi~Ell~~~l~~~~t~~y~ee~~~al~nfity  712 (970)
T COG5656         679 M--WGIFELLLNLLIDEITAVYSEEVADALDNFITY  712 (970)
T ss_pred             h--hHHHHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence            2  234444445554443 24456677777777643

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=84.61  E-value=43  Score=32.89  Aligned_cols=211  Identities=12%  Similarity=0.133  Sum_probs=135.9

Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHH----HHH-hcCChHHHHHhhcC-CchHHHHHHHHHH
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR----SVV-SEGGIRSLLAYLDG-PLPQESAVGALRN  386 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~----~i~-~~g~l~~L~~~L~~-~~~~~~a~~aL~~  386 (534)
                      ..+.+.|.+..++.-+..... +.+..+..+..++-......|.    .+. +...+..|+.--.+ ++..-.|-..++.
T Consensus        73 qef~~~~~l~~lI~~l~~l~f-E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEF-ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccc-hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            456678999999999988887 7788888887777653322221    111 12233333333222 4445555566666


Q ss_pred             hhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcC----chHHHHHhhcCCChHHHHH
Q 009471          387 LVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAG----CTPLLIKLLEAKPNSVREV  460 (534)
Q Consensus       387 La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g----~v~~Lv~ll~~~~~~v~~~  460 (534)
                      ..+ ..-.+.+....-+.....+++.+.-++..-|..+...+.. +.-....+....    +.+.--.++.+++--++..
T Consensus       152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            666 4445566777788889999998888888888888777663 333333333332    2445777888999999999


Q ss_pred             HHHHHHHhcCCCcchHHHHh---hCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhc
Q 009471          461 AAQAISSLVTLPQNCREVKR---DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERG  525 (534)
Q Consensus       461 A~~aL~~L~~~~~~~~~~~~---~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~  525 (534)
                      +..+|..+..+.+|.....+   +...+..+..+|... ...++-.|.....-...+   .+.++..|.+|
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N  301 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVANPNKPQPVRDILVRN  301 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhcCCCCCchHHHHHHhC
Confidence            99999999988888765444   445666777777765 334666666655554444   55555555543

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=84.38  E-value=38  Score=32.10  Aligned_cols=136  Identities=19%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             HHHHH-HhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009471          199 AALVQ-LLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG  276 (534)
Q Consensus       199 ~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~  276 (534)
                      +.|+. +-+..+++.+...+..|..++.++ .+...+     +..+..+.+.+....+..+.+.+..+-...+...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            34444 445567999999999999999888 544443     6667777777777776677777777755433322    


Q ss_pred             CCChHHHHHH--Hc--------cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh-hcCCChhHHHHHHHHHH
Q 009471          277 HGGVRPLIEI--CQ--------TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQ  345 (534)
Q Consensus       277 ~g~i~~Lv~l--l~--------~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll-~~~~~~~v~~~a~~~L~  345 (534)
                       +.+..++..  ++        +...+.....+.+++.++.....    .-...++.+..++ ++.++ .++..++.+|.
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~-~~~alale~l~  147 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDE-VAQALALEALA  147 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccH-HHHHHHHHHHH
Confidence             122333333  11        11233444445666666653322    1133577777788 55554 78999999999


Q ss_pred             HHcc
Q 009471          346 NLTA  349 (534)
Q Consensus       346 ~La~  349 (534)
                      .++.
T Consensus       148 ~Lc~  151 (234)
T PF12530_consen  148 PLCE  151 (234)
T ss_pred             HHHH
Confidence            9994

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=84.37  E-value=41  Score=32.50  Aligned_cols=211  Identities=20%  Similarity=0.190  Sum_probs=120.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhhcChh----hHHH
Q 009471          200 ALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES--GSTVGKEKATISLQRLSMSAE----MARA  273 (534)
Q Consensus       200 ~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~Ls~~~~----~~~~  273 (534)
                      .|-..|.++++.+|..|+..|..+...-+.. . ....-+..|+....+  .+......+..++..|.....    ....
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~   80 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVK   80 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHH
Confidence            3445688889999999999999886654311 0 112225666665544  244444444555555543221    1111


Q ss_pred             HHhCCChHHHHHHH--ccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          274 IVGHGGVRPLIEIC--QTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       274 l~~~g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      +     +..+..-.  +......|..+...|..+....  ...+.+  .+.+..+++.+..+.++.-...+...+..+..
T Consensus        81 i-----~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   81 I-----LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             H-----HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            1     12222211  1234456788888888887643  222222  45778888888766655666666677766665


Q ss_pred             CChHHHHHHHhcCChHHHHHhhcC------------C--chHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHH
Q 009471          350 SNENLRRSVVSEGGIRSLLAYLDG------------P--LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLG  415 (534)
Q Consensus       350 ~~~~~~~~i~~~g~l~~L~~~L~~------------~--~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~  415 (534)
                      ..+.       ....+.+.+.+.-            |  -+++.-...|.+.-..   ......-.+|.|++-|.+..+.
T Consensus       154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s---~~~fa~~~~p~LleKL~s~~~~  223 (262)
T PF14500_consen  154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS---TPLFAPFAFPLLLEKLDSTSPS  223 (262)
T ss_pred             hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC---cHhhHHHHHHHHHHHHcCCCcH
Confidence            3331       2334445554421            1  1344444444443331   1112344689999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q 009471          416 AQQAAASALCRVCT  429 (534)
Q Consensus       416 v~~~A~~aL~~la~  429 (534)
                      ++..++.+|.....
T Consensus       224 ~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  224 VKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.37  E-value=29  Score=39.46  Aligned_cols=278  Identities=17%  Similarity=0.194  Sum_probs=162.3

Q ss_pred             HhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc---CCchhHHHHhcCCH
Q 009471          163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE---SGSCENWLVSEGVL  239 (534)
Q Consensus       163 L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~---~~~~~~~l~~~g~i  239 (534)
                      |++.+.+.+.+.+..+..+...+++|....-+.--++.++.-+..-...+|...+.+|..-..   .-++++       +
T Consensus       476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeqE-------L  548 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQE-------L  548 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHHH-------H
Confidence            467788888889999999988888887777676778888877766555666655555433221   112333       2


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHh-hcChhhHHHHHhCCChHHHHHHHccC----ChHHHHHHHHH--HHHccCCchH
Q 009471          240 PPLIRLVESG-STVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTG----DSVSQAAAACT--LKNISAVPEV  311 (534)
Q Consensus       240 ~~Lv~lL~~~-~~~~~~~A~~~L~~L-s~~~~~~~~l~~~g~i~~Lv~ll~~~----~~~~~~~a~~a--L~nLa~~~~~  311 (534)
                      -.|+-+|+.+ +...+.........| +.+...+..+.+-|.++.|-..++..    .|+ +.....-  =+|.+. +..
T Consensus       549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qysgvsehydrnpss-~sf  626 (2799)
T KOG1788|consen  549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYSGVSEHYDRNPSS-PSF  626 (2799)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhhhHHHHhhcCCCC-chh
Confidence            2455566654 334444444454554 44455577788888888887666531    010 0000000  011111 122


Q ss_pred             HHHHHhhCcHHHHHHHhhcCCCh-hHH------HHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHH
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILL-GSK------EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGAL  384 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~-~v~------~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL  384 (534)
                      ++.+.....+-.--.+.+++... .+.      .-.-.||..+-..+.++...+.+..|+..++.++-+++-|...+..+
T Consensus       627 ~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflindehRSslLriv  706 (2799)
T KOG1788|consen  627 KQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIV  706 (2799)
T ss_pred             hhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHH
Confidence            22222222222222333333220 111      12345666777777888877888899999999887777787888888


Q ss_pred             HHhhcCccHHHHHhcCcHHHHHHHHhcCC------------HHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhc
Q 009471          385 RNLVGSVSQEVLISLGFFPRLVHVLKAGS------------LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE  451 (534)
Q Consensus       385 ~~La~~~~~~~l~~~~~i~~Lv~lL~~~~------------~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~  451 (534)
                      .+|...+.. + +....+..+++.|+++-            .........+++++.. +...++.++++++...|...+.
T Consensus       707 scLitvdpk-q-vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  707 SCLITVDPK-Q-VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             HHHhccCcc-c-ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence            887762111 1 12234567777777631            1345556677777764 4677888899998888877764

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=84.32  E-value=2.3  Score=36.63  Aligned_cols=69  Identities=17%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC------CChHHHHHHHHHHHHhc
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQAISSLV  469 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~A~~aL~~L~  469 (534)
                      .+..+.+-|+++++.++..|+..|-.+..+  ..+...+...+++..|++++..      .+..|+...+..+....
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            466777888999999999999999999865  7888999999999999999963      46899999999998886

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=84.10  E-value=12  Score=33.14  Aligned_cols=145  Identities=18%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHH
Q 009471          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLI  397 (534)
Q Consensus       318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~  397 (534)
                      ...++.|+++++.+....+|..++.+|+.|..-++...+.+.....  .-...-.+......   .+.+.......+...
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~~~~~~~~~~~~---~l~~~~~~~~~ee~y   83 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKSSENSNDESTDI---SLPMMGISPSSEEYY   83 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccccccccccchhh---HHhhccCCCchHHHH
Confidence            4567888999987766689999999999999877765543322111  00000000111111   111111112334555


Q ss_pred             hcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          398 SLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       398 ~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      ....+..|+..|++.+- .-...+..++.++..+  ..+...+  ...+|.+++.++..+...++.-..-|+.|.
T Consensus        84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            55578888998877763 3344566666666533  3344444  446999999998776788888777776664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=83.54  E-value=2.7  Score=33.40  Aligned_cols=71  Identities=11%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (534)
                      ....+..|++..+..|..++..|.++.....  ....--.+.+..+...|+++|+.+--.|+..|..|+...+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            5666778888889999999999999997665  1111123667788889999999999999999999987664

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=83.40  E-value=7.5  Score=34.44  Aligned_cols=142  Identities=13%  Similarity=0.162  Sum_probs=75.0

Q ss_pred             cHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHH
Q 009471          197 NIAALVQLLTATS-PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAI  274 (534)
Q Consensus       197 ~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l  274 (534)
                      ..+.|+++|+.+. ..+|.+++++|+.|..-++.+......+.-..-   -.+.+........ .....+ ..++.-.. 
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l-~~~~~~~~~ee~y~~-   85 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL-PMMGISPSSEEYYPT-   85 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH-hhccCCCchHHHHHH-
Confidence            4677888888764 999999999999998877755543322211000   0011111111111 001111 12222222 


Q ss_pred             HhCCChHHHHHHHccCChHHH-HHHHHHHHHccCCchHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHc
Q 009471          275 VGHGGVRPLIEICQTGDSVSQ-AAAACTLKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT  348 (534)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~-~~a~~aL~nLa~~~~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La  348 (534)
                         ..+..|++++++++-... ..+..++.++-...+.+ ..+. ..++|.++..++..++ ..++....-|..|.
T Consensus        86 ---vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~-~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   86 ---VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPD-SLREFYFQQLADLV  156 (160)
T ss_pred             ---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCH-HHHHHHHHHHHHHH
Confidence               245788888887543332 34556665555322111 1111 4578888888887766 66776555555443

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=83.26  E-value=3.1  Score=33.02  Aligned_cols=71  Identities=10%  Similarity=0.021  Sum_probs=55.8

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                      ...+..+.++.+.+|.+++..|++|..... ...+...+++..+...++++++ -+-.+|+.+|..|+...+.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHChH
Confidence            445566788889999999999999988655 2222336778888888988887 8999999999999975554

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.04  E-value=5.2  Score=34.21  Aligned_cols=71  Identities=18%  Similarity=0.097  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC---CChHHHHHHHHHHHHhcCC
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA---KPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~---~~~~v~~~A~~aL~~L~~~  471 (534)
                      .+..|.+-|+++++.++..|+..|-.+..+  ..+...+....++..|++++..   .++.++..+.+.+......
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            467788888899999999999999999966  5688888888889999999974   4788999999999988743

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.41  E-value=10  Score=30.39  Aligned_cols=93  Identities=15%  Similarity=0.141  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHc
Q 009471          169 EAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVE  247 (534)
Q Consensus       169 ~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~  247 (534)
                      +.|..|+..+..-...+--....+. ..+.+..|++..+.++....+.++..+..+..++.....+.+-|++..|-++-.
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~   81 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP   81 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence            4566676665544333222222333 345677788888888877999999999999999988889989999988776666


Q ss_pred             cCCHHHHHHHHHHH
Q 009471          248 SGSTVGKEKATISL  261 (534)
Q Consensus       248 ~~~~~~~~~A~~~L  261 (534)
                      .-++..+...-..+
T Consensus        82 ~~~~~~~~~id~il   95 (98)
T PF14726_consen   82 NVEPNLQAEIDEIL   95 (98)
T ss_pred             cCCHHHHHHHHHHH
Confidence            55666665554444

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=82.34  E-value=13  Score=33.00  Aligned_cols=109  Identities=23%  Similarity=0.221  Sum_probs=69.8

Q ss_pred             hHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc---CChHH
Q 009471          280 VRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA---SNENL  354 (534)
Q Consensus       280 i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~---~~~~~  354 (534)
                      +..+..++++.++..+-.++..+.-++...+ .+.+.+  ..-+..++.+++..++..+.+.++.+|..|..   +.+..
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l  105 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL  105 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence            3567788888888888888888877776432 233333  34578888999887776778888888887764   34443


Q ss_pred             HHHHHhc---CChHHHHHhhcCCchHHHHHHHHHHhhc
Q 009471          355 RRSVVSE---GGIRSLLAYLDGPLPQESAVGALRNLVG  389 (534)
Q Consensus       355 ~~~i~~~---g~l~~L~~~L~~~~~~~~a~~aL~~La~  389 (534)
                      .+.+.-.   +.++.++++++++...+.++.+|..+-.
T Consensus       106 ~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  106 TREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLP  143 (165)
T ss_pred             HHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3333321   2344445555544566667777666654

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=81.35  E-value=67  Score=32.78  Aligned_cols=137  Identities=11%  Similarity=0.131  Sum_probs=84.7

Q ss_pred             hhchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc--C--------CCHHHHHHHHHHH
Q 009471          152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT--A--------TSPRIREKTVTVI  220 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~--~--------~~~~v~~~A~~~L  220 (534)
                      .......++..|..|. +..+...+.++.-|..+.. ....+.....+..|+.+.+  +        ++.++...+..+|
T Consensus        43 r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCL  121 (532)
T KOG4464|consen   43 RKELGERIFEVLENGEPLTHRVVCLETVRILSRDKD-GLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCL  121 (532)
T ss_pred             HHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccc-ccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHH
Confidence            3444555667777776 4446677777776665332 2222222233555555432  1        2458899999999


Q ss_pred             HHhhcCCc-hhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcC-hhhHH-HHHhCCChHHHHHHHcc
Q 009471          221 CSLAESGS-CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMS-AEMAR-AIVGHGGVRPLIEICQT  289 (534)
Q Consensus       221 ~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~-~~~~~-~l~~~g~i~~Lv~ll~~  289 (534)
                      +|+..+++ .+....+......+++.+...     ...++..-.+.|.-++.- .+.+. .+...+|++.+...+.+
T Consensus       122 cNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led  198 (532)
T KOG4464|consen  122 CNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED  198 (532)
T ss_pred             HHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence            99999887 677777777777776655432     233444555566666443 34444 45669999999988875

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.30  E-value=54  Score=35.02  Aligned_cols=102  Identities=16%  Similarity=0.101  Sum_probs=72.2

Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (534)
                      .|.+..+++-+++.+..++...+..|..++..-.........|.+..|.+-+-+..+.+|..|+.+|+.+-....+-+. 
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-  168 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-  168 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence            4668888888889999999999999999876544444444566677777777778899999999999887653322221 


Q ss_pred             HhhCcHHHHHHHhhcCCChhHHHHHH
Q 009471          316 AEEGIVSVMIKLLDCGILLGSKEYAA  341 (534)
Q Consensus       316 ~e~g~i~~L~~ll~~~~~~~v~~~a~  341 (534)
                         .....+..+++.++..+++..|+
T Consensus       169 ---~~~n~l~~~vqnDPS~EVRr~al  191 (885)
T COG5218         169 ---RIVNLLKDIVQNDPSDEVRRLAL  191 (885)
T ss_pred             ---HHHHHHHHHHhcCcHHHHHHHHH
Confidence               12345667776665547777654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=80.67  E-value=6.8  Score=33.94  Aligned_cols=70  Identities=17%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHHHhcC
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~  470 (534)
                      .+..|.+-|.++++.++..|+..|-.+..+  ..+...+.+.+++..|++++. ..++.|+..++..+...+.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            467777788899999999999999999865  778889999999999999997 5678899999999998863

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=80.05  E-value=10  Score=32.88  Aligned_cols=73  Identities=22%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAES  226 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~  226 (534)
                      ..++.+..+|+++++.++..|+..|-.+.+.. ......+.+.+.+..|+++++. .++.|+..++..+...+..
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            44788888999999999999998888888763 5566677788899999999874 5689999999999888753

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-07
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-06

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 8/198 (4%)
Query: 196 SNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES-GSTVG 253
           +++  LV+LLT+T    +++    +  +A    S    +V  G +  L++L+ S  S V 
Sbjct: 2   NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVR 312
           KE A       S   E  +AIV  GGV  L+++  + DS  Q  AA  L NI++ P E  
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR---SLLA 369
           + + + G V V++KLL        KE AA  L N+ +  +   +++V  GG+     LL 
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 370 YLDGPLPQESAVGALRNL 387
             D  + +E+A  AL N+
Sbjct: 181 STDSEVQKEAA-RALANI 197

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 12/236 (5%)
Query: 242 LIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           L++L+ S  +  +++A   L  + S  A   +AIV  GGV  L+++  + DS  Q  AA 
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 301 TLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVV 359
            L NI++ P E  + + + G V V++KLL        KE AA  L N+ +  +   +++V
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE-AARALANIASGPDEAIKAIV 125
Query: 360 SEGGIR---SLLAYLDGPLPQESAVGALRNLVGSVSQEV--LISLGFFPRLVHVLKXXXX 414
             GG+     LL   D  + +E+A  AL N+     + +  ++  G    LV +L     
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAA-RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 415 XXXXXXXXXXCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468
                       + +  ++ +K +V +AG   +L KLL +  + V++ A +A+ ++
Sbjct: 185 EVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-49
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-44
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-36
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-47
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-47
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-45
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-35
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-42
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-33
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-26
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-28
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-14
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-11
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-29
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-31
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-23
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-29
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-28
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-26
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-28
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-24
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-26
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-25
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-22
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-11
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-14
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-10
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	9e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  181 bits (459), Expect = 2e-49
 Identities = 64/367 (17%), Positives = 145/367 (39%), Gaps = 13/367 (3%)

Query: 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREK 215
            EL   L        +KA   + +  K++      +     ++A+V+ +           
Sbjct: 153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 212

Query: 216 TVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-AI 274
           T   + +L+        +   G +P L+ ++ S        A  +L  L +  E A+ A+
Sbjct: 213 TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGIL 333
              GG++ ++ +    +    A     L+ ++    E + ++   G    ++ ++     
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332

Query: 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSV 391
                  +  L+ L+  + N + ++V  GG+++L  +L  P     ++ +  LRNL  + 
Sbjct: 333 EKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391

Query: 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLL 450
           +++  +  G    LV +L +  +     AA  L  +   + + K +V + G    L++ +
Sbjct: 392 TKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450

Query: 451 EAKPNS--VREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAV 505
               +   + E A  A+  L +  Q+    +   R    +P +V+LL P       K  V
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

Query: 506 ACLASLS 512
             + +L+
Sbjct: 511 GLIRNLA 517

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  165 bits (418), Expect = 7e-44
 Identities = 80/393 (20%), Positives = 139/393 (35%), Gaps = 37/393 (9%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
            G    L+  L          A+ +L   +   E   +AV     +  +V LL  T+ + 
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 213 REKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEM 270
              T   +  LA      +  +++ G    L+ ++ + +        +  L+ LS+ +  
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330
             AIV  GG++ L                 TL+N+S      +    EG++  +++LL  
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGS 410

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRN 386
             +      AA  L NLT +N   +  V   GGI +L+  +    D     E A+ ALR+
Sbjct: 411 DDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 387 LV-----GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEA 440
           L        ++Q  +      P +V +L   S      A   L R           + E 
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 529

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSLVTL---------------------PQNCREVK 479
           G  P L++LL       +   +   +    +                       + R V 
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589

Query: 480 RDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           R   ++P  VQLL  SP    ++ A   L  L+
Sbjct: 590 RGLNTIPLFVQLLY-SPIENIQRVAAGVLCELA 621

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  141 bits (357), Expect = 7e-36
 Identities = 65/372 (17%), Positives = 129/372 (34%), Gaps = 38/372 (10%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  ++    E        +++ +     N  A++    + AL   LT  S R+ +  + 
Sbjct: 323 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382

Query: 219 VICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGH 277
            + +L+++         EG+L  L++L+ S        A   L  L+  + +    +   
Sbjct: 383 TLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440

Query: 278 GGVRPLIEICQTGDSVS--QAAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDCG 331
           GG+  L+               A C L+++++        +  +     + V++KLL   
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500

Query: 332 ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--------------- 376
                 +     ++NL     N    +  +G I  L+  L                    
Sbjct: 501 SHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559

Query: 377 ---------QESAVGALRNLVGSV-SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
                     E+  GAL  L   + ++ V+  L   P  V +L +     Q+ AA  LC 
Sbjct: 560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 619

Query: 427 VCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
           +    E  + +   G T  L +LL ++   V   AA  +  +    ++  +  +   SV 
Sbjct: 620 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKKRLSVE 676

Query: 487 NLVQLLDPSPQN 498
               L    P  
Sbjct: 677 LTSSLFRTEPMT 688

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  135 bits (341), Expect = 8e-34
 Identities = 70/398 (17%), Positives = 143/398 (35%), Gaps = 17/398 (4%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           LS   +S  A   +      ++  +Q  +     +     +  +    + +LA+     I
Sbjct: 177 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGI 236

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKA 257
            ALV +L +    +    +T + +L       +  +   G L  ++ L+   +       
Sbjct: 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296

Query: 258 TISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGD-SVSQAAAACTLKNISAVPEVRQML 315
           T  LQ L+  + E    I+  GG + L+ I +T          +  LK +S     +  +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
            E G +  +   L         +     L+NL+ +          EG + +L+  L    
Sbjct: 357 VEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 412

Query: 376 P--QESAVGALRNLV--GSVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVCT 429
                 A G L NL      ++ ++  +G    LV  +          + A  AL  + +
Sbjct: 413 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472

Query: 430 SAEMKKL----VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
             +  ++    V      P+++KLL    +     A   +   + L        R+  ++
Sbjct: 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 532

Query: 486 PNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLE 523
           P LVQLL  + Q+T ++ ++           ++ E +E
Sbjct: 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  111 bits (278), Expect = 7e-26
 Identities = 60/358 (16%), Positives = 106/358 (29%), Gaps = 32/358 (8%)

Query: 128 KTGVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK 187
              ++      L     +   +    G    L+  L    +     A   L      + K
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432

Query: 188 NVLAVMGRSNIAALVQLLTATSPR--IREKTVTVICSLA----ESGSCENWLVSEGVLPP 241
           N + V     I ALV+ +     R  I E  +  +  L     ++   +N +     LP 
Sbjct: 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492

Query: 242 LIRLVESGSTVGKEKATISL-QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC 300
           +++L+   S     KAT+ L + L++       +   G +  L+++       +Q   + 
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552

Query: 301 TLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS 360
                  V  VR     E                         L  L     N R  +  
Sbjct: 553 GGTQQQFVEGVRMEEIVEA--------------------CTGALHILARDIHN-RIVIRG 591

Query: 361 EGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQ-EVLISLGFFPRLVHVLKAGSLGAQ 417
              I   +  L  P+   Q  A G L  L       E + + G    L  +L + + G  
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 651

Query: 418 QAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474
             AA+ L R+     +  K       T  L +      N   ++     +    L   
Sbjct: 652 TYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYR 709

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  110 bits (275), Expect = 2e-25
 Identities = 52/318 (16%), Positives = 92/318 (28%), Gaps = 18/318 (5%)

Query: 210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESG------STVGKEKATISLQR 263
             I     T   SL+  G+ E+  V   VL    +           + +  + A    QR
Sbjct: 33  SGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR 92

Query: 264 LSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ--AAAACTLKNISAVPE--VRQMLAEEG 319
             + A M    +  G   P  +      +  Q  A  +  LK+                 
Sbjct: 93  --VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATR 150

Query: 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL---DGPLP 376
            +  + KLL+          AA  +  L+    +    + S   + +++  +   +    
Sbjct: 151 AIPELTKLLNDEDQ-VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 209

Query: 377 QESAVGALRNL-VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MK 434
                G L NL         +   G  P LV++L +        A + L  +    E  K
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDP 494
             V  AG    ++ LL         +    +  L    Q  + +         LV ++  
Sbjct: 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329

Query: 495 SPQNTAKKYAVACLASLS 512
                        L  LS
Sbjct: 330 YTYEKLLWTTSRVLKVLS 347

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  174 bits (443), Expect = 1e-47
 Identities = 61/323 (18%), Positives = 124/323 (38%), Gaps = 11/323 (3%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV-SEGVLPPLIRLVESGSTVG-KE 255
           I  L +LL      +  K   ++  L++  +  + ++ S  ++  ++R +++ + V    
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQM 314
               +L  LS   E   AI   GG+  L+++  +        A  TL N+       +  
Sbjct: 76  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP 374
           +   G +  M+ LL+    +       +CLQ L   N+  +  +++ GG ++L+  +   
Sbjct: 136 VRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194

Query: 375 LP---QESAVGALRNL-VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS 430
                  +    L+ L V S ++  ++  G    L   L   S    Q     L  +  S
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL--S 252

Query: 431 AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490
               K  G  G    L++LL +   +V   AA  +S+L       + +      +  LV+
Sbjct: 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312

Query: 491 LL-DPSPQNTAKKYAVACLASLS 512
            +     +    + A+  L  L+
Sbjct: 313 TVLRAGDREDITEPAICALRHLT 335

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  172 bits (436), Expect = 9e-47
 Identities = 64/366 (17%), Positives = 142/366 (38%), Gaps = 13/366 (3%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKT 216
           EL   L        +KA   + +  K++      +     ++A+V+ +           T
Sbjct: 18  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 77

Query: 217 VTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-AIV 275
              + +L+        +   G +P L++++ S        A  +L  L +  E A+ A+ 
Sbjct: 78  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137

Query: 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILL 334
             GG++ ++ +    +    A     L+ ++    E + ++   G    ++ ++      
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197

Query: 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS 392
                 +  L+ L+  + N + ++V  GG+++L  +L  P     ++ +  LRNL    +
Sbjct: 198 KLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAA 255

Query: 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE 451
            +     G    LV +L +  +     AA  L  +   + + K +V + G    L++ + 
Sbjct: 256 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315

Query: 452 AKPNS--VREVAAQAISSLVTLPQNCREVK---RDDKSVPNLVQLLDPSPQNTAKKYAVA 506
              +   + E A  A+  L +  Q     +   R    +P +V+LL P       K  V 
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 507 CLASLS 512
            + +L+
Sbjct: 376 LIRNLA 381

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  146 bits (369), Expect = 1e-37
 Identities = 56/290 (19%), Positives = 111/290 (38%), Gaps = 12/290 (4%)

Query: 230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGG-VRPLIEICQ 288
           ++  ++   +P L +L+     V   KA + + +LS       AI+     V  ++   Q
Sbjct: 7   DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 66

Query: 289 TGDSVS-QAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNL 347
             + V      A TL N+S   E    + + G +  ++K+L   +      YA   L NL
Sbjct: 67  NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNL 125

Query: 348 TASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGS--VSQEVLISLGFFP 403
               E  + +V   GG++ ++A L+             L+ L      S+ ++++ G   
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185

Query: 404 RLVHVLKAGSL-GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA 462
            LV++++  +        +  L  +   +  K  + EAG    L   L      + +   
Sbjct: 186 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245

Query: 463 QAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
             + +L        + +  +  +  LVQLL  S        A   L++L+
Sbjct: 246 WTLRNLS---DAATKQEGMEGLLGTLVQLLG-SDDINVVTCAAGILSNLT 291

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  145 bits (366), Expect = 3e-37
 Identities = 66/380 (17%), Positives = 130/380 (34%), Gaps = 38/380 (10%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  ++    E        +++ +     N  A++    + AL   LT  S R+ +  + 
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246

Query: 219 VICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR-AIVGH 277
            + +L+++         EG+L  L++L+ S        A   L  L+ +    +  +   
Sbjct: 247 TLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304

Query: 278 GGVRPLIEICQTGDSVS--QAAAACTLKNISA----VPEVRQMLAEEGIVSVMIKLLDCG 331
           GG+  L+               A C L+++++        +  +     + V++KLL   
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364

Query: 332 ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--------------- 376
                 +     ++NL     N    +  +G I  L+  L                    
Sbjct: 365 SHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423

Query: 377 ---------QESAVGALRNLVGSV-SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
                     E   GAL  L   V ++ V+  L   P  V +L +     Q+ AA  LC 
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483

Query: 427 VCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
           +    E  + +   G T  L +LL ++   V   AA  +  +    ++  +  +   SV 
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKKRLSVE 540

Query: 487 NLVQLLDPSPQNTAKKYAVA 506
               L    P    +   + 
Sbjct: 541 LTSSLFRTEPMAWNETADLG 560

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  144 bits (365), Expect = 3e-37
 Identities = 70/386 (18%), Positives = 145/386 (37%), Gaps = 36/386 (9%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTV 217
           ++A L   +++      D L      ++++ L ++      ALV ++ T T  ++   T 
Sbjct: 145 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 204

Query: 218 TVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH 277
            V+  L+   S +  +V  G +  L   +   S    +    +L   ++S    +     
Sbjct: 205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL--RNLSDAATKQEGME 262

Query: 278 GGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGS 336
           G +  L+++  + D      AA  L N++    + + M+ + G +  +++ +        
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 337 -KEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDGPLP---QESAVGALRNLVG 389
             E A   L++LT+     E  + +V    G+  ++  L  P      ++ VG +RNL  
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 390 SVSQEVLI-SLGFFPRLVHVLKAGSLGAQQ----------------------AAASALCR 426
             +    +   G  PRLV +L       Q+                          AL  
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442

Query: 427 VCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
           +      + ++      PL ++LL +   +++ VAA  +  L    +    ++ +  +  
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG-ATA 501

Query: 487 NLVQLLDPSPQNTAKKYAVACLASLS 512
            L +LL  S       YA A L  +S
Sbjct: 502 PLTELLH-SRNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  138 bits (349), Expect = 5e-35
 Identities = 70/398 (17%), Positives = 143/398 (35%), Gaps = 17/398 (4%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           LS   +S  A   +      ++  +Q  +     +     +  +    + +LA+     I
Sbjct: 41  LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKA 257
            ALV++L +    +    +T + +L       +  +   G L  ++ L+   +       
Sbjct: 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160

Query: 258 TISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVPEVRQML 315
           T  LQ L+  + E    I+  GG + L+ I +T          +  LK +S     +  +
Sbjct: 161 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 220

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
            E G +  +   L         +     L+NL+ +          EG + +L+  L    
Sbjct: 221 VEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 276

Query: 376 P--QESAVGALRNLV--GSVSQEVLISLGFFPRLVHVLKAGS--LGAQQAAASALCRVCT 429
                 A G L NL      ++ ++  +G    LV  +          + A  AL  + +
Sbjct: 277 INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336

Query: 430 SAEM----KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSV 485
             +     +  V      P+++KLL    +     A   +   + L        R+  ++
Sbjct: 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 396

Query: 486 PNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLE 523
           P LVQLL  + Q+T ++ ++           ++ E +E
Sbjct: 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 434

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 46/244 (18%), Positives = 80/244 (32%), Gaps = 25/244 (10%)

Query: 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREK-TVTVICSLAESGSCENW 232
           AL  L    +E E    AV     +  +V+LL   S     K TV +I +LA   +    
Sbjct: 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATIS----------------------LQRLSMSAEM 270
           L  +G +P L++L+       + + ++                       L  L+     
Sbjct: 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 449

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330
              I G   +   +++  +     Q  AA  L  ++   E  + +  EG  + + +LL  
Sbjct: 450 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 509

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGS 390
               G   YAA  L  ++       +  +S     SL          E+A   L      
Sbjct: 510 RNE-GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAW-NETADLGLDIGAQG 567

Query: 391 VSQE 394
               
Sbjct: 568 EPLG 571

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 42/245 (17%), Positives = 67/245 (27%), Gaps = 29/245 (11%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIR----- 213
           ++  L         KA   L+  +     N   +  +  I  LVQLL       +     
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

Query: 214 -----------------EKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEK 256
                            E     +  LA        +     +P  ++L+ S     +  
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 476

Query: 257 ATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQM 314
           A   L  L+   E A AI   G   PL E+  + +      AA  L  +S     + ++ 
Sbjct: 477 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP 374
           L+ E   S    L      +   E A   L           R             Y    
Sbjct: 537 LSVELTSS----LFRTEP-MAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDA 591

Query: 375 LPQES 379
           L  + 
Sbjct: 592 LGMDP 596

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  166 bits (422), Expect = 2e-45
 Identities = 68/385 (17%), Positives = 152/385 (39%), Gaps = 14/385 (3%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           +++     DAE  T     EL   L        +KA   + +  K++      +     +
Sbjct: 3   VNLINYQDDAELAT-RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 199 AALVQLL-TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           +A+V+ +           T   + +L+        +   G +P L++++ S        A
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 258 TISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQML 315
             +L  L +  E A+ A+   GG++ ++ +    +    A     L+ ++    E + ++
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
              G    ++ ++            +  L+ L+  + N + ++V  GG+++L  +L  P 
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPS 240

Query: 376 P--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAE 432
               ++ +  LRNL  + +++  +  G    LV +L +  +     AA  L  +   + +
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGME-GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299

Query: 433 MKKLVGEAGCTPLLIKLLEAKPNS--VREVAAQAISSLVTLPQNCREVK---RDDKSVPN 487
            K +V + G    L++ +    +   + E A  A+  L +  Q     +   R    +P 
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 488 LVQLLDPSPQNTAKKYAVACLASLS 512
           +V+LL P       K  V  + +L+
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLA 384

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  158 bits (402), Expect = 1e-42
 Identities = 65/343 (18%), Positives = 129/343 (37%), Gaps = 14/343 (4%)

Query: 178 LVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSE 236
           +V  +   +   LA      I  L +LL      +  K   ++  L+ +  S    + S 
Sbjct: 2   VVNLINYQDDAELATRA---IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 237 GVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295
            ++  ++R +++ + V        +L  LS   E   AI   GG+  L+++  +      
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 296 AAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354
             A  TL N+       +  +   G +  M+ LL+    +       +CLQ L   N+  
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 177

Query: 355 RRSVVSEGGIRSLLAYLDGPLP---QESAVGALRNL-VGSVSQEVLISLGFFPRLVHVLK 410
           +  +++ GG ++L+  +          +    L+ L V S ++  ++  G    L   L 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 411 AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
             S    Q     L  +  +A   K  G  G    L++LL +   +V   AA  +S+L  
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 471 LPQNCREVKRDDKSVPNLVQLL-DPSPQNTAKKYAVACLASLS 512
                + +      +  LV+ +     +    + A+  L  L+
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  146 bits (369), Expect = 4e-38
 Identities = 73/406 (17%), Positives = 151/406 (37%), Gaps = 36/406 (8%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           L +            G  ++++A L   +++      D L      ++++ L ++     
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 199 AALVQLLTATSPR-IREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
            ALV ++   +   +   T  V+  L+   S +  +V  G +  L   +   S    +  
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 258 TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLA 316
             +L+ LS +A     +   G +  L+++  + D      AA  L N++    + + M+ 
Sbjct: 248 LWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 317 EEGIVSVMIKLLDCGILLGS-KEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLD 372
           + G +  +++ +          E A   L++LT+     E  + +V    G+  ++  L 
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 373 GPLP---QESAVGALRNLVGSVSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAA------- 421
            P      ++ VG +RNL    +    L   G  PRLV +L       Q+  +       
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

Query: 422 ---------------SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466
                           AL  +      + ++      PL ++LL +   +++ VAA  + 
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 467 SLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
            L    +    ++ +  +   L +LL  S       YA A L  +S
Sbjct: 486 ELAQDKEAAEAIEAEG-ATAPLTELLH-SRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  138 bits (349), Expect = 2e-35
 Identities = 71/377 (18%), Positives = 133/377 (35%), Gaps = 45/377 (11%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
            G    L+  L          A+ +L   +   E   +AV     +  +V LL  T+ + 
Sbjct: 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 159

Query: 213 REKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEM 270
              T   +  LA      +  +++ G    L+ ++ + +        +  L+ LS+ +  
Sbjct: 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC 330
             AIV  GG++ L                 TL+N+S     +     EG++  +++LL  
Sbjct: 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS 277

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL----DGPLPQESAVGALRN 386
              +     AA  L NLT +N   +  V   GGI +L+  +    D     E A+ ALR+
Sbjct: 278 D-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLL 446
           L     +  +                                     +  V      P++
Sbjct: 337 LTSRHQEAEMA------------------------------------QNAVRLHYGLPVV 360

Query: 447 IKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA 506
           +KLL    +     A   +   + L        R+  ++P LVQLL  + Q+T ++ ++ 
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 507 CLASLSPSARKLLERLE 523
                     ++ E +E
Sbjct: 421 GTQQQFVEGVRMEEIVE 437

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  156 bits (396), Expect = 2e-42
 Identities = 67/353 (18%), Positives = 146/353 (41%), Gaps = 14/353 (3%)

Query: 152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSP 210
           T G     +  L+       + ++   L      +      V+    +   ++LL++   
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 211 RIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMS- 267
            ++E+ V  + ++A +S  C ++++   +LPPL++L    + +     A  +L  L    
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIK 326
           +           +  L  +    D+   A A   L  +S  P +  Q + + G+   +++
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGAL 384
           LL           A   + N+   ++   + +++   ++SLL  L  P    ++ A   +
Sbjct: 242 LLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 385 RNLV-GSVSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEA 440
            N+  G+ +Q + +I    FP L+ +L+      ++ AA A+    +  SAE  K + E 
Sbjct: 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLD 493
           GC   L  LL    + + +VA   + +++ L +   E KR+   +     L++
Sbjct: 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ--EAKRNGTGINPYCALIE 411

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  131 bits (331), Expect = 2e-33
 Identities = 56/340 (16%), Positives = 117/340 (34%), Gaps = 12/340 (3%)

Query: 184 EDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC---ENWLVSEGVLP 240
               N+    G    + +++++ + SP  +         L         +  + + GV+ 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 241 PLIR-LVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAA 298
             +  L    +   + ++   L  + S ++   R ++  G V   IE+  +     Q  A
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 299 ACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS 357
              L NI+      R  + +  I+  +++L      L     A   L NL          
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 358 VVSEGGIRSL--LAYLDGPLPQESAVGALRNLVGSVS--QEVLISLGFFPRLVHVLKAGS 413
                 +  L  L ++        A  AL  L    +   + +I  G   RLV +L    
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247

Query: 414 LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP 472
                 A  A+  + T      +++        L+ LL +   S+++ A   IS++    
Sbjct: 248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307

Query: 473 QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           +   +   D    P L+ +L  + +   +K A   + + +
Sbjct: 308 RAQIQTVIDANIFPALISILQ-TAEFRTRKEAAWAITNAT 346

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  110 bits (276), Expect = 3e-26
 Identities = 48/262 (18%), Positives = 94/262 (35%), Gaps = 10/262 (3%)

Query: 260 SLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV---PEVRQMLA 316
           ++              G      +IE+  +     Q +A    + + +    P + ++++
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP 376
             G+V+  ++ L        +  +A  L N+ + N    R V+  G +   +  L     
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 377 --QESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS- 430
             QE AV AL N+ G  +   + ++     P L+ +      L   + A  AL  +C   
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 431 AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490
           +   +    + C  +L  LL      V   A  A+S L   P +  +   D      LV+
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 491 LLDPSPQNTAKKYAVACLASLS 512
           LL           A+  + ++ 
Sbjct: 242 LLM-HNDYKVVSPALRAVGNIV 262

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 5/179 (2%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L     +    AL ++   +  D+     ++  S + +L+ LL++    I+++   
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298

Query: 219 VICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAI 274
            I ++  +G+      ++   + P LI ++++     +++A  ++   +   SAE  + +
Sbjct: 299 TISNIT-AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYL 357

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL 333
           V  G ++PL ++    DS     A   L+NI  + E        GI      + +   L
Sbjct: 358 VELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGL 416

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  134 bits (339), Expect = 4e-36
 Identities = 53/245 (21%), Positives = 105/245 (42%), Gaps = 8/245 (3%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGD 291
                 LP + + + S     +  AT    ++ S   E  +A++  G +  L+++  + +
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 292 SVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350
                 A   L NI++   E  Q + + G +  +++LL         + A   L N+ + 
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG 126

Query: 351 NENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL--VGSVSQEVLISLGFFPRLV 406
                ++V+  G + +L+  L  P     + A+ AL N+   G+   + +I  G  P LV
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186

Query: 407 HVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
            +L + +    Q A  AL  + +   E K+ V EAG    L +L   +   +++ A +A+
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246

Query: 466 SSLVT 470
             L +
Sbjct: 247 EKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  113 bits (285), Expect = 1e-28
 Identities = 47/237 (19%), Positives = 106/237 (44%), Gaps = 8/237 (3%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV 217
           ++  +L    ++ +  A     + + +  + + AV+    + ALVQLL++ + +I ++ +
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 218 TVICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAI 274
             + ++A SG  E    ++  G LP L++L+ S +    ++A  +L  ++    E  +A+
Sbjct: 76  WALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGIL 333
           +  G +  L+++  + +      A   L NI++   E  Q + + G +  +++LL     
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN- 193

Query: 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLV 388
               + A   L N+ +     +++V   G +  L           Q+ A  AL  L 
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 355 RRSVVSEGGIRSLLAYL--DGPLPQESAVGALRNL--VGSVSQEVLISLGFFPRLVHVLK 410
                    +  +   L  D    Q SA      +   G+   + +I  G  P LV +L 
Sbjct: 5   HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS 64

Query: 411 AGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV 469
           + +    Q A  AL  + +   E  + V +AG  P L++LL +    + + A  A+S++ 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           +      +   D  ++P LVQLL  SP     + A+  L++++
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIA 166

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L   + +   +AL +L        + + AV+    + ALVQLL++ + +I ++ + 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160

Query: 219 VICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIV 275
            + ++A SG  E    ++  G LP L++L+ S +    ++A  +L  ++    E  +A+ 
Sbjct: 161 ALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK 219

Query: 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
             G +  L ++    +   Q  A   L+ + +
Sbjct: 220 EAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 392 SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLL 450
           S          P++   L +  +  Q +A     ++ +   E  + V +AG  P L++LL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 451 EAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510
            +    + + A  A+S++ +      +   D  ++P LVQLL  SP     + A+  L++
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSN 122

Query: 511 LS 512
           ++
Sbjct: 123 IA 124

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  131 bits (331), Expect = 3e-34
 Identities = 52/312 (16%), Positives = 110/312 (35%), Gaps = 28/312 (8%)

Query: 185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244
           +            +      + A         V V+  L+      + +   G L  +  
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 245 LVESGSTVG-----------KEKATISLQRLSMSAEMARAIV--GHGGVRPLIEICQTGD 291
           L++    +            +  A ++L  L+      +A +    G +R L+   ++  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 292 SVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
              Q   A  L+N+S  A    ++ L E G V  +++         + +     L NL+A
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 350 SNENLRRSVVSE-GGIRSLLAYLDGPLP------QESAVGALRNLVGSVS-----QEVLI 397
                +  + +  G +  L+  L            ES  G LRN+   ++     +++L 
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 398 SLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNS 456
                  L+  LK+ SL     A   L  +   + + ++ + + G   +L  L+ +K   
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 320

Query: 457 VREVAAQAISSL 468
           +   +A A+ +L
Sbjct: 321 IAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  117 bits (294), Expect = 4e-29
 Identities = 53/276 (19%), Positives = 92/276 (33%), Gaps = 27/276 (9%)

Query: 263 RLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVS 322
           R               G+                 A C L  +S   E R  + E G + 
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQ 76

Query: 323 VMIKLLDCGILLGS----------KEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYL 371
            + +LL     +            + YA   L NLT  +   + ++ S +G +R+L+A L
Sbjct: 77  AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 136

Query: 372 DGPLP--QESAVGALRNLVGSVSQE---VLISLGFFPRLVHVL-KAGSLGAQQAAASAL- 424
                  Q+     LRNL           L  +G    L+    +       ++  SAL 
Sbjct: 137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196

Query: 425 -CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNS----VREVAAQA---ISSLVTLPQNCR 476
                 +     +    G    L+  L  +  +    + E        +SSL+   ++ R
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256

Query: 477 EVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           ++ R++  +  L+Q L  S   T    A   L +LS
Sbjct: 257 QILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLS 291

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 99.5 bits (248), Expect = 5e-23
 Identities = 54/317 (17%), Positives = 114/317 (35%), Gaps = 31/317 (9%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLL------ 205
                +    +          A+  L++ +  E+ ++ +  +G   + A+ +LL      
Sbjct: 31  EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG--GLQAIAELLQVDCEM 88

Query: 206 -----TATSPRIREKTVTVICSLA--ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKAT 258
                   S  +R      + +L   +  +       +G +  L+  ++S S   ++   
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148

Query: 259 ISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVPE--VRQ 313
             L+ LS        + +   G V+ L+E        S   +    L N+SA        
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 208

Query: 314 MLAEEGIVSVMIKLL---DCGILLGSKEYAAECLQNLT---ASNENLRRSVVSEGGIRSL 367
           + A +G ++ ++  L        L   E     L+N++   A+NE+ R+ +     +++L
Sbjct: 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268

Query: 368 LAYLDGPLP--QESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA 423
           L +L         +A G L NL       QE L  +G    L +++ +        +A+A
Sbjct: 269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328

Query: 424 LCRVCTSAEMKKLVGEA 440
           L  +  +   K      
Sbjct: 329 LRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 384 LRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCT 443
           +R    +  +          +  + + A        A   L ++    E +  + E G  
Sbjct: 16  IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGL 75

Query: 444 PLLIKLLEAKPN-----------SVREVAAQAISSL-VTLPQNCREVKRDDKSVPNLVQL 491
             + +LL+               ++R  A  A+++L      N   +      +  LV  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 492 LDPSPQNTAKKYAVACLASLS 512
           L  S     ++   + L +LS
Sbjct: 136 LK-SESEDLQQVIASVLRNLS 155

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENW 232
            L ++   +  +E +   +   + +  L+Q L + S  I       + +L A +   +  
Sbjct: 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM---ARAIVGHGGVRP 282
           L   G +  L  L+ S   +    +  +L+ L  +         I+  G   P
Sbjct: 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  124 bits (313), Expect = 9e-31
 Identities = 59/360 (16%), Positives = 124/360 (34%), Gaps = 12/360 (3%)

Query: 174 ALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW- 232
           A     +              +  +  + Q L +   + +         +          
Sbjct: 65  ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124

Query: 233 -LVSEGVLPPLIRLVESGSTVG-KEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQT 289
            ++  GV+P L+  +        + +A  +L  + S ++   + +V    V   I++  T
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184

Query: 290 GDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348
           G    +  A   L N++    + R  + +   +  ++ L +          A   L NL 
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLC 243

Query: 349 ASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPR 404
              +      V    + +L   +          A  A+  L        + +I +    R
Sbjct: 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303

Query: 405 LVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463
           LV +L   S   Q  A  A+  + T +    ++V  AG  P L  LL +   ++++ A  
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363

Query: 464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLE 523
            IS++        +   D   +P LV+LL+   +   KK A   +++ S    +  + + 
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIR 422

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  102 bits (256), Expect = 2e-23
 Identities = 62/335 (18%), Positives = 120/335 (35%), Gaps = 23/335 (6%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
                  +  L  G +E K +A+ +L     +       V+  + +  ++ L  +  P +
Sbjct: 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL 231

Query: 213 REKTVTVICSLAESGSCE-NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEM 270
                  + +L      + +W V    LP L +L+ S  T     A  ++  LS    E 
Sbjct: 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA 291

Query: 271 ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLD 329
            +A++     + L+E+     ++ Q  A   + NI        Q++   G++  +  LL 
Sbjct: 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 330 CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL 387
                  KE A   + N+TA N    ++V+    I  L+  L+      ++ A  A+ N 
Sbjct: 352 SPKENIKKE-ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

Query: 388 VGSVSQ-----EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK------- 435
                Q       L+S G    L  +L+       +    AL  +    E  K       
Sbjct: 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNI 470

Query: 436 -----LVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
                 + +AG    +    + + + + E A + I
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 68.1 bits (166), Expect = 3e-12
 Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQE- 394
           + A    ++ ++ + + +     +  +  +   L+      Q SA    R ++    +  
Sbjct: 63  DGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP 122

Query: 395 --VLISLGFFPRLVHVLKAGS-LGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLL 450
             V+I  G  PRLV  ++       Q  AA AL  + + ++   K+V +A   PL I+LL
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182

Query: 451 EAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS 510
                 V+E A  A+ ++     + R+      ++  ++ L + S + +  + A   L++
Sbjct: 183 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSN 241

Query: 511 LS 512
           L 
Sbjct: 242 LC 243

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 37/211 (17%), Positives = 82/211 (38%), Gaps = 8/211 (3%)

Query: 131 VLGEATLPLS--VAGSSTDAEATTHGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDEK 187
            L +A   +S    G     +A       + L  L        +  AL ++   +  ++ 
Sbjct: 273 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL 332

Query: 188 NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSL-AESGSCENWLVSEGVLPPLIRLV 246
               V+    + AL  LL++    I+++    I ++ A +      ++   ++PPL++L+
Sbjct: 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392

Query: 247 ESGSTVGKEKATISLQRLSM----SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL 302
           E      K++A  ++   S       ++ R +V  G ++PL ++ +  D+         L
Sbjct: 393 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452

Query: 303 KNISAVPEVRQMLAEEGIVSVMIKLLDCGIL 333
           +NI  + E  +      I      +   G +
Sbjct: 453 ENILKMGEADKEARGLNINENADFIEKAGGM 483

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  120 bits (303), Expect = 1e-29
 Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 16/293 (5%)

Query: 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS--MSAEMARAIVGHGGVRPLIEICQTGD 291
                +  +++ + S +   + +AT + ++L           I+  G +   +      D
Sbjct: 54  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113

Query: 292 SVS-QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
               Q  +A  L NI++   E  + + + G +   I LL         E A   L N+  
Sbjct: 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGNIAG 172

Query: 350 SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQ---------EVLISLG 400
                R  V+  G I  LLA L  P     A G LRNL  ++S           +     
Sbjct: 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232

Query: 401 FFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
             P LV +L          +  A+  +     E  ++V + G  P L+KLL A    +  
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292

Query: 460 VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
            A +AI ++VT      +   D  ++     LL  +P+   +K A   +++++
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNIT 344

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  116 bits (292), Expect = 4e-28
 Identities = 56/350 (16%), Positives = 129/350 (36%), Gaps = 15/350 (4%)

Query: 180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW--LVSEG 237
           +     +          ++  +V+ + + +   + +       L           ++  G
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 238 VLPPLIR-LVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVSQ 295
           ++P  +  L ++  +  + ++  +L  + S ++E  +A+V  G +   I +  +  +   
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 296 AAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCG----ILLGSKEYAAECLQNLTAS 350
             A   L NI+      R ++ + G +  ++ LL       +  G        L NL  +
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 351 NENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLV 406
                     E  + +L+  L    P     +  A+  L    +   E+++  G  P+LV
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280

Query: 407 HVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
            +L A  L     A  A+  + T + E  + V +AG   +   LL     ++++ A   +
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340

Query: 466 SSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSA 515
           S++    Q+  +   +   VP LV  +        +K A   + + +   
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGG 389

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  112 bits (280), Expect = 2e-26
 Identities = 62/328 (18%), Positives = 115/328 (35%), Gaps = 21/328 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
            ++ L   H     +A+ +L     +       V+    I  L+ LL             
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

Query: 219 VICSLAESGSCEN------WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMA 271
              +   S  C N          E +LP L+RL+          +  ++  L+    E  
Sbjct: 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267

Query: 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDC 330
             +V  G V  L+++    +      A   + NI     E  Q + + G ++V   LL  
Sbjct: 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327

Query: 331 GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLV 388
                 ++ A   + N+TA  ++  + VV+ G +  L+  L       Q+ A  A+ N  
Sbjct: 328 PK-TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386

Query: 389 GSVSQE---VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE-------MKKLVG 438
              + E    L+  G    L+++L A      Q    A+  +  +AE       +  ++ 
Sbjct: 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446

Query: 439 EAGCTPLLIKLLEAKPNSVREVAAQAIS 466
           E G    +  L   +  SV + +   I 
Sbjct: 447 ECGGLDKIEALQRHENESVYKASLNLIE 474

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 75.8 bits (186), Expect = 8e-15
 Identities = 42/242 (17%), Positives = 91/242 (37%), Gaps = 15/242 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L     E    +  ++        + +  V+ +  +  LV+LL AT   I    + 
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 219 VICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMSAEMARAIV 275
            I ++  +G+ E    ++  G L     L+ +  T  +++AT ++  + +   +  + +V
Sbjct: 297 AIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355

Query: 276 GHGGVRPLIEICQTGDSVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGIL 333
            HG V  L+ +    D  +Q  AA  + N +     E    L   GI+  ++ LL     
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-D 414

Query: 334 LGSKEYAAECLQNL------TASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALR 385
               +   + + N+          E L   +   GG+  + A          ++++  + 
Sbjct: 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

Query: 386 NL 387
             
Sbjct: 475 KY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 65.0 bits (158), Expect = 3e-11
 Identities = 33/214 (15%), Positives = 81/214 (37%), Gaps = 13/214 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L    L     AL ++   +   ++    V+    +A    LLT     I+++   
Sbjct: 279 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 219 VICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAI 274
            + ++  +G  +    +V+ G++P L+ ++       +++A  ++   +   + E    +
Sbjct: 339 TMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397

Query: 275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNI-------SAVPEVRQMLAEEGIVSVMIKL 327
           V  G + PL+ +    D+         + NI           ++  M+ E G +  +  L
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457

Query: 328 LDCGILLGSKEYAAECLQNLTASNENLRRSVVSE 361
                     + +   ++   +  E   ++VV E
Sbjct: 458 QRHEN-ESVYKASLNLIEKYFSVEEEEDQNVVPE 490

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  121 bits (303), Expect = 5e-29
 Identities = 60/339 (17%), Positives = 127/339 (37%), Gaps = 12/339 (3%)

Query: 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICS 222
           +++     +H   +  ++ +    K +  +       AL  L    S   +E    V+ +
Sbjct: 462 IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNA 521

Query: 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG---HGG 279
           +         +V EG +  L+R+   G+  GK  AT +L R+ ++     +  G      
Sbjct: 522 VCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV 581

Query: 280 VRPLIEICQTGDS-VSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSK 337
           +RPL+ + Q   + +    +   L N++++   VRQ + +E  VS +   L    L    
Sbjct: 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY-LT 640

Query: 338 EYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGS---VS 392
             AA+CL NL  S + ++    +   ++ L    +        +  GAL  +        
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700

Query: 393 QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLE 451
           +++L    +   L  ++   S   Q      +  +     E+ K + E     LL  L +
Sbjct: 701 EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760

Query: 452 AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQ 490
              ++  +    A   L    +     + D+  +P++  
Sbjct: 761 LPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  120 bits (302), Expect = 6e-29
 Identities = 56/290 (19%), Positives = 109/290 (37%), Gaps = 11/290 (3%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS 292
           L +EG+   L  L ++ S   +E     L  +    E+   +V  GGV+ L+ +   G  
Sbjct: 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE 550

Query: 293 VSQAAAACTLKNISAVPEVRQMLAEEG---IVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
             +  A   L  I          + +    ++  ++ LL           +   L NL +
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610

Query: 350 SNENLRRSVVSEGGIRSLLAYL--DGPLPQESAVGALRNLVGSVSQEVLI--SLGFFPRL 405
            NE++R+ ++ E G+  +  YL  D      +A   L NLV S     +   +      L
Sbjct: 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL 670

Query: 406 VHVLKAGSLGAQQAAASALCRVCTSAEM--KKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463
             + +        A A AL  + + +    +K++  A    +L  L+     +V+     
Sbjct: 671 ALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730

Query: 464 AISSLVTLPQNCREVKRDDKSVPNLVQL--LDPSPQNTAKKYAVACLASL 511
            I +++   +   +   +   +  L  L  L    +  A++ A  CLA+ 
Sbjct: 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  113 bits (282), Expect = 2e-26
 Identities = 67/362 (18%), Positives = 133/362 (36%), Gaps = 17/362 (4%)

Query: 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228
           + +  A D L     + E     +  +++I AL+ L    +       VT   +L  +  
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453

Query: 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ 288
            +       +LP +I L +       E+    L  +    +    +   G    L  + +
Sbjct: 454 KQE------MLPEMIELAKFAKQHIPEEHE--LDDVDFINKRITVLANEGITTALCALAK 505

Query: 289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT 348
           T    SQ   A  L  +  + E+R  + +EG V  ++++   G   G K +A + L  + 
Sbjct: 506 TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALARIG 564

Query: 349 ASNEN--LRRSVVSEGGIRSLLAYLDGP---LPQESAVGALRNLVG--SVSQEVLISLGF 401
            +           S   IR LL  L      L    ++ AL NL       ++ +I    
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQG 624

Query: 402 FPRLVHVLKAGSLGAQQAAASALCRVCTSAE-MKKLVGEAGCTPLLIKLLEAKPNSVREV 460
             ++ + L    L   +AAA  LC +  S + +K   G       L  L E +       
Sbjct: 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA 684

Query: 461 AAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLE 520
            A A++ + ++   C E      S  +++  L  +P    +   +  + ++  +  ++ +
Sbjct: 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK 744

Query: 521 RL 522
           +L
Sbjct: 745 KL 746

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  115 bits (290), Expect = 6e-28
 Identities = 65/380 (17%), Positives = 123/380 (32%), Gaps = 64/380 (16%)

Query: 196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES------- 248
           + +  +  LL+      ++     + +++ S      +   G LP LI+L+         
Sbjct: 29  TKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVL 88

Query: 249 -----GSTVGKEKATISLQRLSMS-------------------------AEMARAIVGHG 278
                GS   + +A+ +L  +  S                                    
Sbjct: 89  LGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148

Query: 279 GVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGS-- 336
           G+                 A C L  +S   E R  + E G +  + +LL     +    
Sbjct: 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208

Query: 337 --------KEYAAECLQNLTASNENLRRSVVS-EGGIRSLLAYLDGPLP--QESAVGALR 385
                   + YA   L NLT  +   + ++ S +G +R+L+A L       Q+     LR
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 386 NLVGSVSQE---VLISLGFFPRLVHVL-KAGSLGAQQAAASAL--CRVCTSAEMKKLVGE 439
           NL           L  +G    L+    +       ++  SAL       +     +   
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328

Query: 440 AGCTPLLIKLLEAKPNSVREVAAQA-------ISSLVTLPQNCREVKRDDKSVPNLVQLL 492
            G    L+  L  +  +      ++       +SSL+   ++ R++ R++  +  L+Q L
Sbjct: 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388

Query: 493 DPSPQNTAKKYAVACLASLS 512
             S   T    A   L +LS
Sbjct: 389 K-SHSLTIVSNACGTLWNLS 407

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  103 bits (258), Expect = 8e-24
 Identities = 55/350 (15%), Positives = 112/350 (32%), Gaps = 59/350 (16%)

Query: 185 DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR 244
           +            +      + A         V V+  L+      + +   G L  +  
Sbjct: 137 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 196

Query: 245 LVESGSTVG-----------KEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQTGD 291
           L++    +            +  A ++L  L+      +A +    G +R L+   ++  
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 292 SVSQAAAACTLKNIS--AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA 349
              Q   A  L+N+S  A    ++ L E G V  +++         + +     L NL+A
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316

Query: 350 SNENLRRSVVSE-GGIRSLLAYLDGPLP------QESAVGALRNLVGSVSQEVLISLGFF 402
                +  + +  G +  L+  L            ES  G LRN+               
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV--------------- 361

Query: 403 PRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAA 462
                              S+L    T+ + ++++ E  C   L++ L++   ++   A 
Sbjct: 362 -------------------SSLI--ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

Query: 463 QAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
             + +L       +E   D  +V  L  L+  S        + A L +L 
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  100 bits (249), Expect = 1e-22
 Identities = 52/279 (18%), Positives = 105/279 (37%), Gaps = 28/279 (10%)

Query: 185 DEKNVLAVMGRSNIAALVQLL-----------TATSPRIREKTVTVICSLAESGSCENWL 233
           DE++  A+     + A+ +LL              S  +R      + +L          
Sbjct: 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 237

Query: 234 V--SEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEI-CQ 288
           +   +G +  L+  ++S S   ++     L+ LS        + +   G V+ L+E   +
Sbjct: 238 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 297

Query: 289 TGDSVSQAAAACTLKNISAVPE--VRQMLAEEGIVSVMIKLL---DCGILLGSKEYAAEC 343
                +  +    L N+SA        + A +G ++ ++  L        L   E     
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 357

Query: 344 LQNLT---ASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGS--VSQEVL 396
           L+N++   A+NE+ R+ +     +++LL +L         +A G L NL       QE L
Sbjct: 358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417

Query: 397 ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435
             +G    L +++ +        +A+AL  +  +   K 
Sbjct: 418 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 80.0 bits (197), Expect = 4e-16
 Identities = 32/211 (15%), Positives = 84/211 (39%), Gaps = 14/211 (6%)

Query: 159 LLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKT 216
           L+A+L+    + +      L   + + D  +   +    ++ AL++           +  
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 217 VTVICSLAESGSCENWLVSE--GVLPPLIRLV----ESGSTVGKEKATISLQRLSM---- 266
           ++ + +L+   +     +    G L  L+  +    ++ +    E     L+ +S     
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMI 325
           + +  + +  +  ++ L++  ++      + A  TL N+SA  P+ ++ L + G VS++ 
Sbjct: 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427

Query: 326 KLLDCGILLGSKEYAAECLQNLTASNENLRR 356
            L+           +A  L+NL A+     +
Sbjct: 428 NLIHSKHK-MIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 77.7 bits (191), Expect = 2e-15
 Identities = 37/283 (13%), Positives = 83/283 (29%), Gaps = 38/283 (13%)

Query: 253 GKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR 312
                  S   +   + M         V  +  +     +  +   + TL  +S+  +  
Sbjct: 4   SHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSC 63

Query: 313 QMLAEEGIVSVMIKLLDCGILLGS-----------KEYAAECLQNLTASNENLRRSVVSE 361
             + + G + ++I+LL                   +  A+  L N+  S  + +R     
Sbjct: 64  ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI 123

Query: 362 GGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA 421
             +  L                +R    +  +          +  + + A        A 
Sbjct: 124 RVLHLL--------------EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169

Query: 422 SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPN-----------SVREVAAQAISSL-V 469
             L ++    E +  + E G    + +LL+               ++R  A  A+++L  
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229

Query: 470 TLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
               N   +      +  LV  L  S     ++   + L +LS
Sbjct: 230 GDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLS 271

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  104 bits (261), Expect = 7e-26
 Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 8/196 (4%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENW--LVSEGVLPPLIRLVESGSTVGKE 255
           +  +VQ L +   +  +  +  +  +A SG  E    ++  G LP L++L+ S +    +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 256 KATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQ 313
           +A  +L  ++    E  +A++  G +  L+++  + +      A   L NI++   E  Q
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG 373
            + + G +  +++LL         + A   L N+ +     +++V   G +  L      
Sbjct: 133 AVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191

Query: 374 PLP--QESAVGALRNL 387
                Q+ A  AL  L
Sbjct: 192 ENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  101 bits (254), Expect = 6e-25
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 7/199 (3%)

Query: 278 GGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGS 336
             +  +++   + D     +A   L  I++   E  Q + + G +  +++LL        
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE-QI 70

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL-VGSVSQ 393
            + A   L N+ +      ++V+  G + +L+  L  P     + A+ AL N+  G   Q
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 394 -EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLE 451
            + +I  G  P LV +L + +    Q A  AL  + +   E K+ V EAG    L +L  
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190

Query: 452 AKPNSVREVAAQAISSLVT 470
            +   +++ A +A+  L +
Sbjct: 191 HENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  100 bits (252), Expect = 1e-24
 Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 7/203 (3%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGD 291
                 LP +++ + S      + A   L +++    E  +A++  G +  L+++  + +
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 292 SVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350
                 A   L NI++   E  Q + + G +  +++LL         + A   L N+ + 
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG 126

Query: 351 NENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNL--VGSVSQEVLISLGFFPRLV 406
                ++V+  G + +L+  L  P     + A+ AL N+   G+  ++ +   G   +L 
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186

Query: 407 HVLKAGSLGAQQAAASALCRVCT 429
            +    +   Q+ A  AL ++ +
Sbjct: 187 QLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 99.2 bits (248), Expect = 4e-24
 Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 7/206 (3%)

Query: 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL 371
                    +  M++ L+        + A   L  + +      ++V+  G + +L+  L
Sbjct: 5   HHHHHHGSELPQMVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 372 DGPLP--QESAVGALRNLV-GSVSQ-EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRV 427
             P     + A+ AL N+  G   Q + +I  G  P LV +L + +    Q A  AL  +
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 428 CT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVP 486
            +   E  + V +AG  P L++LL +    + + A  A+S++ +     ++  ++  ++ 
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 487 NLVQLLDPSPQNTAKKYAVACLASLS 512
            L QL         +K A   L  L 
Sbjct: 184 KLEQLQS-HENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 23/160 (14%)

Query: 170 AKHKALDSLVEAMKEDEKNVL--AVMGRSNIAA-----------------LVQLLTATSP 210
               AL +LV+ +    + +L  A+   SNIA+                 LVQLL++ + 
Sbjct: 51  IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110

Query: 211 RIREKTVTVICSLAESGSCEN--WLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-SMS 267
           +I ++ +  + ++A SG  E    ++  G LP L++L+ S +    ++A  +L  + S  
Sbjct: 111 QILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169

Query: 268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA 307
            E  +A+   G +  L ++    +   Q  A   L+ + +
Sbjct: 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVT 218
           L+  L   + +   +AL +L        + + AV+    + ALVQLL++ + +I ++ + 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160

Query: 219 VICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS 265
            + ++A  G+  +  +   G L  L +L    +   +++A  +L++L 
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  103 bits (258), Expect = 7e-24
 Identities = 53/362 (14%), Positives = 123/362 (33%), Gaps = 43/362 (11%)

Query: 197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKE 255
            I   VQ L++   + +      I          +  +   G +  L+ L+ S +   ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 256 KATISLQRLSM-SAEMARAIVGHGGVRPLIE-ICQTGDSVSQAAAACTLKNISAVPEVRQ 313
            A  +L+ L   S           G+R  +  + +TG++  Q      L N+S+  E+++
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 314 MLAEEGIVSVMIKLLDCGILLGS--------------KEYAAECLQNLTASNENLRRSVV 359
            L  + +  +  +++                         A  CL+NL++++   +    
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 360 SEGGIRSLLAYLDGPLPQ-ESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGA-- 416
             G I SL+AY+   +        ++ N +  +           P     L+  +  A  
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 417 ----------------QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL-EAKPNSVRE 459
                                  L    T+ +    +  +      + L+ ++K ++  E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 460 VAAQAISSLVTLPQN-----CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS 514
             A A+ +L            + +   +K +P + +LL  S  +   +   + L+++S  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMSRH 361

Query: 515 AR 516
             
Sbjct: 362 PL 363

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 91.0 bits (225), Expect = 1e-19
 Identities = 52/395 (13%), Positives = 123/395 (31%), Gaps = 46/395 (11%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV 217
           + +  L     + +      +     +DE     V     I  LV LL + +  +++   
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 218 TVICSLA--ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV 275
             + +L    + +        G+   +  L  +G+   +++ T  L  LS + E+   ++
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 276 GHGGVRPLIE----------------ICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE- 318
               +  L +                  +  D      A   L+N+S+    RQ +    
Sbjct: 126 -ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

Query: 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQE 378
           G++  ++  +   +     +  +         N + R         R L         ++
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244

Query: 379 SAVGALRNLVGSVSQE-----------------VLISLGFFPRLVHVLKAGSLGAQQAAA 421
           S+ G   N    +                     L         ++++      A   A 
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304

Query: 422 SALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN 474
           +   +  T+          + +  +    P + +LL++  + V    A  +S++   P  
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364

Query: 475 CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA 509
            R +   ++  P + +LL     NT+    +   A
Sbjct: 365 HRVM--GNQVFPEVTRLLTSHTGNTSNSEDILSSA 397

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 80.6 bits (198), Expect = 2e-16
 Identities = 55/400 (13%), Positives = 129/400 (32%), Gaps = 48/400 (12%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTV 217
           L+  L+  +   +  A  +L   +     N L    ++ I   V LL  T +  I+++  
Sbjct: 49  LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108

Query: 218 TVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKE----------------KATISL 261
            ++ +L+ +       +    LP L   V    +   +                 AT  L
Sbjct: 109 GLLWNLSSTDEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167

Query: 262 QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIV 321
           + LS +    + +  + G+   +         +      +++N   V        +  + 
Sbjct: 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

Query: 322 SVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV------------------VSEGG 363
           +   +L        +++ +  C  N +    N                        +   
Sbjct: 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 364 IRSLLAYLDGPLPQESAVGALRNLV-------GSVSQEVLISLGFFPRLVHVLKAGSLGA 416
             +L+         E+  GAL+NL          +SQ + +     P++  +L++G+   
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

Query: 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNS-----VREVAAQAISSLVTL 471
            ++ AS L  +     + +++G      +   L     N+     +   A   + +L+  
Sbjct: 348 VRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407

Query: 472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511
                +       + N++ L   S    A + A   L+ +
Sbjct: 408 QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 71.8 bits (175), Expect = 2e-13
 Identities = 36/259 (13%), Positives = 82/259 (31%), Gaps = 24/259 (9%)

Query: 280 VRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKE 338
           +   ++   + D   QA  A  +++        +Q + + G +  ++ LL        ++
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQ 62

Query: 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYL---DGPLPQESAVGALRNLVGSVSQEV 395
            AA  L+NL   +   +     + GIR  ++ L        Q+   G L NL  +   + 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 396 LISLGFFPRLVHVLKAGSLGA----------------QQAAASALCRVCTSAEMKK-LVG 438
            +     P L   +     G                    A   L  + ++   ++ +  
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN 498
            +G    L+  ++    + R       + +  L      +  +        QL   +   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP--TRYRQLEYNARNA 240

Query: 499 TAKKYAVACLASLSPSARK 517
             +K +  C ++ S     
Sbjct: 241 YTEKSSTGCFSNKSDKMMN 259

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 57.5 bits (138), Expect = 5e-09
 Identities = 30/204 (14%), Positives = 75/204 (36%), Gaps = 16/204 (7%)

Query: 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESG 227
           +  +   D  +   + + K    +     I   + L+  +      E     + +L  S 
Sbjct: 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315

Query: 228 S------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVR 281
                   +   + E  LP + RL++SG++         L  +S    + R + G+    
Sbjct: 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVFP 374

Query: 282 PLIEICQTGDSVS------QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILL 334
            +  +  +    +       ++A  T++N+ A  P++ +      +++ +I L       
Sbjct: 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434

Query: 335 GSKEYAAECLQNLTASNENLRRSV 358
            + E A   L ++  S++ L+  +
Sbjct: 435 KAAEAARLLLSDM-WSSKELQGVL 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 21/202 (10%)

Query: 254 KEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA-------CTLKNIS 306
                  L     + + +  +     +R  + +       +   A           K + 
Sbjct: 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 307 AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS 366
           +    + +  +E  +  + +LL  G         A  L N++         V+       
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNS-DVVRSGASLLSNMSRHPLL--HRVMGNQVFPE 375

Query: 367 LLAYLDGPLP--------QESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAG-SLG 415
           +   L               SA   +RNL+ S  Q  +   S      ++++ ++  S  
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435

Query: 416 AQQAAASALCRVCTSAEMKKLV 437
           A +AA   L  + +S E++ ++
Sbjct: 436 AAEAARLLLSDMWSSKELQGVL 457

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 99.3 bits (246), Expect = 4e-22
 Identities = 68/401 (16%), Positives = 133/401 (33%), Gaps = 38/401 (9%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
            S+                E++A L       K  A   L      ++K    V     I
Sbjct: 33  DSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGI 92

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGSCENWL--VSEGVLPPLIRLVESGSTVG-KE 255
             LV LL      +       + +++     +N +   +   +P L+RL+     +   E
Sbjct: 93  PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152

Query: 256 KATISLQRLSMSAEMARAIVGHGGVRPLIEI-----------------CQTGDSVSQAAA 298
             T +L  LS    +   IV H       E+                             
Sbjct: 153 VITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNT 212

Query: 299 ACTLKNISAVPEV--RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356
           A  L+N+S+      R++   +G+V  +I ++   I  G K+  ++ ++N      NL  
Sbjct: 213 AGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI--GQKDSDSKLVENCVCLLRNLSY 270

Query: 357 SVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSL-G 415
            V  E             +   +     R        E+L         + +LK      
Sbjct: 271 QVHREIPQAERYQEAAPNVANNTGTSPARG------YELLFQPEVVRIYISLLKESKTPA 324

Query: 416 AQQAAASALCRVC-----TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
             +A+A A+  +C         ++  + +      +  LL  +   V + A+ A+ +L  
Sbjct: 325 ILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384

Query: 471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511
             +N   +     ++PNLV+ L    QN++  ++   + S+
Sbjct: 385 DARNKELI--GKHAIPNLVKNLPGGQQNSSWNFSEDTVISI 423

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 68.8 bits (167), Expect = 2e-12
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 18/219 (8%)

Query: 184 EDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLA-----ESGSCENWLVSEG 237
              +    +     +   + LL  + +P I E +   I +L            + L  E 
Sbjct: 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355

Query: 238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVS--- 294
            L  +  L+ +      + A+ +L+ L++ A   + ++G   +  L++    G   S   
Sbjct: 356 ALSAIADLLTNEHERVVKAASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQNSSWN 414

Query: 295 -----QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLG-SKEYAAECLQNL 347
                  +   T+  + A   E  + L E   +  ++ +   G         AA  LQ +
Sbjct: 415 FSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

Query: 348 TASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRN 386
               + LR+ +  EG  +S          +  +  +  +
Sbjct: 475 -WGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDD 512

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 68.1 bits (165), Expect = 3e-12
 Identities = 54/322 (16%), Positives = 110/322 (34%), Gaps = 37/322 (11%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           + AL+ ++ A   +    +  V          EN +     L   +      +   +E A
Sbjct: 237 VDALIFIVQAEIGQKDSDSKLV----------ENCVCLLRNLSYQVHREIPQAERYQEAA 286

Query: 258 TISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAV-----PE 310
                    S       +     VR  I + +   + +   A+A  ++N+ A        
Sbjct: 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY 346

Query: 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY 370
           +R  L +E  +S +  LL         + A+  L+NL     N  + ++ +  I +L+  
Sbjct: 347 IRSALRQEKALSAIADLLTNEHE-RVVKAASGALRNLAVDARN--KELIGKHAIPNLVKN 403

Query: 371 LDGPLPQE----------SAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKAGSLG--A 416
           L G               S +  +  ++    +  + L       +LV + K+G+     
Sbjct: 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKE 463

Query: 417 QQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCR 476
            +AAA  L  +    E++K + + G      ++     +  +   +   S   TLP   R
Sbjct: 464 VRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDS---TLPLIDR 520

Query: 477 EVKRDDKSVPNLVQLLDPSPQN 498
             K D K     +Q+ +     
Sbjct: 521 NQKSDKKPDREEIQMSNMGSNT 542

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 67.7 bits (164), Expect = 4e-12
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 9/244 (3%)

Query: 255 EKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQ 313
           E+ +++                   +  +I +        ++ AA  L+++     +V+ 
Sbjct: 25  ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT 84

Query: 314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLT-ASNENLRRSVVSEGGIRSLLAYL- 371
            + +   + V++ LLD          A   L+N++   +++ + ++ +  G+ +L+  L 
Sbjct: 85  DVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR 143

Query: 372 --DGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT 429
                   E   G L NL    S ++ I       L   +     G ++      C+   
Sbjct: 144 KARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNED-CKPRH 202

Query: 430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV-KRDDKSVPNL 488
                 L   AGC   +          +RE     + +L+ + Q        D K V N 
Sbjct: 203 IEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 489 VQLL 492
           V LL
Sbjct: 262 VCLL 265

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 66.1 bits (160), Expect = 1e-11
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 18/233 (7%)

Query: 173 KALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTATSPRIREKTVTVICSL-AESGSCE 230
             + + +     D K V   +    N++  V      + R +E    V  +         
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301

Query: 231 NWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLS-----MSAEMARAIVGHGGVRPLI 284
             L    V+   I L++   T    E +  ++Q L          +  A+     +  + 
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361

Query: 285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD------CGILLGSKE 338
           ++          AA+  L+N++     ++++ +  I +++  L              +  
Sbjct: 362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421

Query: 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP----QESAVGALRNL 387
                +  + A N    + +    GI  L+              +A   L+ +
Sbjct: 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 66.1 bits (160), Expect = 1e-11
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 4/155 (2%)

Query: 362 GGIRSLLAYLDGPLPQE--SAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQA 419
           G       Y   PL Q    ++ +L +L               P ++ +L       +  
Sbjct: 8   GEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSN 67

Query: 420 AASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN-CRE 477
           AA+ L  +C  + ++K  V +    P+L+ LL+     V   A  A+ ++        + 
Sbjct: 68  AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127

Query: 478 VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
             ++   VP LV+LL  +      +     L +LS
Sbjct: 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS 162

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 83.1 bits (205), Expect = 8e-18
 Identities = 37/233 (15%), Positives = 83/233 (35%), Gaps = 9/233 (3%)

Query: 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV 293
           +S+ + P      ++     +E A   L  L  + + A       G+  L+       + 
Sbjct: 37  LSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA 96

Query: 294 S-QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN 351
             +  AA  +   S     +++ +   G +  +++LLD       +  A   +  L    
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 352 ENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLVH 407
           E      +   G   L+  +   +   +  +   L+NL+      +  L S+G   +LV 
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216

Query: 408 VLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
           +++       +    ALC + T   +  +   E      L +LL  +   +++
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLRHRCQLLQQ 267

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 74.3 bits (182), Expect = 7e-15
 Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 11/238 (4%)

Query: 179 VEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV 238
           VE MK      L V+ +       +   A   + RE  + ++  L E+            
Sbjct: 27  VEQMKSC----LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82

Query: 239 LPPLI-RLVESGSTVGKEKATISLQRL-SMSAEMARAIVGHGGVRPLIEICQTGDSVS-Q 295
           +  L+ R +E+G+   + +A   +       A +   ++G G +R L+ +       + +
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 296 AAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL 354
             A   +  +                 SV+++ +   +    K  +A  LQNL   +   
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEH 201

Query: 355 RRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410
           + ++ S G ++ L+A +        E  +GAL +LV    Q V         L  +L+
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR 259

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 73.9 bits (181), Expect = 1e-14
 Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 9/224 (4%)

Query: 312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA-Y 370
             +      +       +       +E A E L +L  + +N         G+  L+  Y
Sbjct: 32  SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRY 90

Query: 371 LDGPLP--QESAVGALRNLVGSVS--QEVLISLGFFPRLVHVL-KAGSLGAQQAAASALC 425
           L+      +  A   +     +V+  QE ++ LG   +L+ +L +      +  A  A+ 
Sbjct: 91  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 426 RVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKS 484
            +                  +L++ ++ +   ++  +A  + +L+      +        
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 485 VPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERLERGRLR 528
           V  LV L+  +  +   ++ +  L SL     + +       L 
Sbjct: 211 VQQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPELG 253

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTVTVIC 221
           L+ G    + +A   +    +        V+G   +  L++LL       +R K +  I 
Sbjct: 91  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 222 SLA-ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARAIVGHGG 279
            L  E  +     +       L+R ++      K K+   LQ L +   E    +   G 
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 280 VRPLIEICQTGDSVSQAAAACTLKNIS 306
           V+ L+ + +T  S         L ++ 
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLV 237

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 9/180 (5%)

Query: 341 AECLQNLTASNENLRRSV-VSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQ----EV 395
              ++      E ++  + V    +       +    Q+   GAL  L            
Sbjct: 17  GSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD 76

Query: 396 LISL-GFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAK 453
              L G    +   L+AG+ G +  AA  +       A +++ V   G    L++LL+  
Sbjct: 77  FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136

Query: 454 PN-SVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
              +VR  A  AIS LV   +              L++ +        K  +   L +L 
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLL 195

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 2/144 (1%)

Query: 370 YLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVC 428
           +  G +P+ S +   R  V  +   + +     P      +       ++ A   L  +C
Sbjct: 9   HSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC 68

Query: 429 TSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPN 487
            + +      +  G   L+ + LEA    +R  AAQ I +        +E      ++  
Sbjct: 69  ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128

Query: 488 LVQLLDPSPQNTAKKYAVACLASL 511
           L++LLD    +T +  A+  ++ L
Sbjct: 129 LLRLLDRDACDTVRVKALFAISCL 152

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-E 225
               + KAL ++   ++E E  +L  +     + L++ +     +++ K+  ++ +L   
Sbjct: 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197

Query: 226 SGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVR 281
               +  L S G++  L+ LV +  +   E    +L  L               + 
Sbjct: 198 HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG 253

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 12/220 (5%)

Query: 280 VRPLIEICQTGDSVS--QAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGS 336
           +   + + +    +    +AAA  +++      E R+ + +   +  +++LL        
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE-DV 68

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP---QESAVGALRNLVGSVSQ 393
           +      L+NL   + + +  V    G+  LL  L        ++   G L NL  +   
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128

Query: 394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK 453
           + L+       L   +     G          +     +        GC   +       
Sbjct: 129 KNLMITEALLTLTENIIIPFSG---WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 454 PNSVREVAAQAISSLVTLPQNC-REVKRDDKSVPNLVQLL 492
             ++R      I SLV   +    + + DDK+  N V +L
Sbjct: 186 RKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 65.4 bits (159), Expect = 3e-12
 Identities = 41/258 (15%), Positives = 85/258 (32%), Gaps = 44/258 (17%)

Query: 143 GSSTDAEATTHGNTRELLARLQIGH--LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAA 200
           GS+ D E T        ++ L+  H        A   +     +  +    V     I  
Sbjct: 1   GSNADMEMTL----ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILK 56

Query: 201 LVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVG-KEKAT 258
           L+QLL   +  ++      + +L  E    +  +     +P L+++++    +  K++ T
Sbjct: 57  LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116

Query: 259 ISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEE 318
             L  LS + ++   ++    +  L E      S            +             
Sbjct: 117 GLLWNLSSNDKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN----- 170

Query: 319 GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG-IRSLLAYLDGPLPQ 377
                                   CL+N++++  + R+++    G I SL+ Y+ G +  
Sbjct: 171 ---------------------VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIAD 209

Query: 378 --------ESAVGALRNL 387
                   E+ V  L NL
Sbjct: 210 YQPDDKATENCVCILHNL 227

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 403 PRLVHVLKAGS--LGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVRE 459
            R V +L+A         AAA+ +   C   +E +K V +      L++LL+ +   V+ 
Sbjct: 11  ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQR 70

Query: 460 VAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
               A+ +LV    + +    +   VP L+Q+L  +     KK     L +LS
Sbjct: 71  AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL-TATSPRIREKTV 217
           LL  L++ + + +     +L   + ED  N L V   + +  L+Q+L        +++  
Sbjct: 57  LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116

Query: 218 TVICSLAESGSCENWLVSEGVLPPLIRLV----------------ESGSTVGKEKATISL 261
            ++ +L+ S      L+    L  L   +                           T  L
Sbjct: 117 GLLWNLS-SNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCL 175

Query: 262 QRLSMSAEMARAIVG--HGGVRPLIEICQTGDSVSQAA------AACTLKNISA 307
           + +S +    R  +    G +  L+   +   +  Q          C L N+S 
Sbjct: 176 RNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 60.2 bits (145), Expect = 9e-10
 Identities = 32/279 (11%), Positives = 85/279 (30%), Gaps = 38/279 (13%)

Query: 169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS 228
            A  K              N   ++    I+ L + +   SP  +++ V +I ++  S +
Sbjct: 430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN 489

Query: 229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL-----SMSAEMARAIVGHGG-VRP 282
               L  +G +  ++  + +   +G+    +  + L       +  +          +  
Sbjct: 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPF 549

Query: 283 LIEICQTGDSVSQAA--------------AACTLKNISAVPE------VRQMLAEEGIVS 322
           L E+      V                  A   L N+++          + +++ +   S
Sbjct: 550 LFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609

Query: 323 VMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS------LLAYLDGPLP 376
            +  L+    +   +    E + N+ +    +     +    +S      L+  L     
Sbjct: 610 TIENLMLDENVPLQRS-TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668

Query: 377 --QESAVGALRNLVGS---VSQEVLISLGFFPRLVHVLK 410
             Q +      N+  +   +++E+L         + V  
Sbjct: 669 ESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA 707

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 33/294 (11%), Positives = 83/294 (28%), Gaps = 36/294 (12%)

Query: 272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG 331
           + I+    +  L           +      + NI+        LA++G V ++++ L   
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK 510

Query: 332 --ILLGSKEYAAECLQNLTASNE------------------NLRRSVVSEGGIRSLLAYL 371
             I    +      L  +                        L                 
Sbjct: 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 372 DGPLPQESAVGALRNLVG-------SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424
                   A+ AL NL          V + ++ +  ++  + +++   ++  Q++    +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 425 CRVCTSAEMKKLVGEAGCTP-------LLIKLLEAKPNSVREVAAQAISSLVT-LPQNCR 476
             + +              P       +L+KLL+      +   A   +++ T +P   +
Sbjct: 631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690

Query: 477 EVKRDDKSVPNLVQLL-DPSPQNTAKKYAVACLASLSPSARKLLERLERGRLRS 529
           E+    + + N +Q+  D       ++  +     L               L+ 
Sbjct: 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQE 744

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 87/550 (15%), Positives = 173/550 (31%), Gaps = 175/550 (31%)

Query: 50  KLEQIPSHLSDLSSH--PCFSKNALCREQLQAVSKTLKEAIELAE----LCVKEKYEGKL 103
           +  +      D+ S     F  N  C++    V    K  +   E    +  K+   G L
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 104 RM-------QSDL--DALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAEATTHG 154
           R+       Q ++    +   L +N       + + +  E   P  +     +     + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSMMTRMYIEQRDRLY- 120

Query: 155 NTRELLARLQIGHLEAKHKALDSLVEAMKE--DEKNVLAV--M---GRSNIAALVQLLTA 207
           N  ++ A+  +  L+   K    L +A+ E    KNVL +  +   G++ +A  V     
Sbjct: 121 NDNQVFAKYNVSRLQPYLK----LRQALLELRPAKNVL-IDGVLGSGKTWVALDV----C 171

Query: 208 TSPRIREKT------VTVICSLAESGSCENWLVSEGVLPPLIRL----VESGSTVGKEKA 257
            S +++ K       + +        +C +    E VL  L +L      + ++     +
Sbjct: 172 LSYKVQCKMDFKIFWLNL-------KNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 258 TISLQRLSMSAEMARAIVGHGGVRPLI--------EI-------CQ----TGD-SVSQAA 297
            I L+  S+ AE+ R +        L+        +        C+    T    V+   
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 298 AACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGI------------LLGSKEYAAECLQ 345
           +A T  +IS        L  + + S+++K LDC                 S    AE ++
Sbjct: 282 SAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIR 338

Query: 346 NLTASNENLRRSVVS--EGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFP 403
           +  A+ +N +          I S L  L+   P E              +++   L  FP
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEY-------------RKMFDRLSVFP 382

Query: 404 RLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLL--EAKPNSVREVA 461
              H+                                    +L+ L+  +   + V  V 
Sbjct: 383 PSAHI----------------------------------PTILLSLIWFDVIKSDVMVVV 408

Query: 462 AQAIS-SLVTLPQNCREVKRDDK----SVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR 516
            +    SL         V++  K    S+P++   L    +N    +            R
Sbjct: 409 NKLHKYSL---------VEKQPKESTISIPSIYLELKVKLENEYALH------------R 447

Query: 517 KLLERLERGR 526
            +++     +
Sbjct: 448 SIVDHYNIPK 457

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 47/289 (16%), Positives = 78/289 (26%), Gaps = 68/289 (23%)

Query: 9   ALANIQSADEWLLHA------QELVPVAVEKARQIKGFPGR--WKMIISKL---EQIPSH 57
           AL  ++ A   L+          +        +       +  W + +      E +   
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEM 201

Query: 58  LSDLSSHPCFSKNALCR-EQLQAVSKTLKEAI-ELAELCVKEKYEGKLRMQSDLDALSGK 115
           L  L        N   R +    +   +     EL  L   + YE  L     L  +   
Sbjct: 202 LQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNA 256

Query: 116 LDLNLHD--CGLLIKT-------GVLGEATLPLSVAGSSTDAEATTHGNTRELLARLQIG 166
              N  +  C +L+ T        +    T  +S+   S      T    + LL      
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLL----- 308

Query: 167 HLEAKHKALDSLVEAMKEDEKNV--LAVMGRSNIAALVQLLTATSPRIR----EKTVTVI 220
                 K LD   + +  +        +   S IA  ++   AT    +    +K  T+I
Sbjct: 309 ------KYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 221 -CSLA--ESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM 266
             SL   E            V P                A I    LS+
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFP--------------PSAHIPTILLSL 394

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 65/461 (14%), Positives = 145/461 (31%), Gaps = 59/461 (12%)

Query: 90   LAELCVKEKYEGKLRMQSDLDALSGKLDLNLHDCGLLIKTGVLGEATLPLSVAGSSTDAE 149
            + ++           + + L     +L   +     +    ++  + L         D  
Sbjct: 593  MGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL-------KIDLR 645

Query: 150  ATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS 209
                     L + L+      K   L +L   +K    ++ A M  + +  L  L++ + 
Sbjct: 646  PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705

Query: 210  PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE 269
              + +  ++ + +LA+        +S  +L  LI LV S    G   + +    L     
Sbjct: 706  MHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAM----LDFFQA 761

Query: 270  MARAIVGHGGVRPLIEIC--------------QTGDSVSQAAAACTLKNISAVPEVRQML 315
            +      + G   L+ +               Q+  S+++  AA T       P V    
Sbjct: 762  LVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF 821

Query: 316  AEEGIVS------------VMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV----- 358
             ++   S             + ++     L G  E  +  L+  ++ +E ++ +      
Sbjct: 822  IQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALG 881

Query: 359  -VSEGGIRSLLAYL-----DGPLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLK 410
             +S G +   L ++       P  Q   + +L+ ++ S S   L       +  L+   +
Sbjct: 882  SISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE 941

Query: 411  AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT 470
                G +   A  L ++        L+      P L   L +  +  R     A+   ++
Sbjct: 942  CAEEGTRNVVAECLGKLT-------LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTIS 994

Query: 471  LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL 511
                  +    +     L  L DP      ++ A+    S 
Sbjct: 995  DHPQPIDPLLKNCIGDFLKTLEDPDLNV--RRVALVTFNSA 1033

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 45/284 (15%), Positives = 89/284 (31%), Gaps = 18/284 (6%)

Query: 197 NIAALVQLLTATSPRIREK-TVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKE 255
           +I+ L++ +T++    R   T  ++  L +     +      V+  +++L+E  +   + 
Sbjct: 7   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 66

Query: 256 KATISLQRLS--MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA---VPE 310
            A   L  L   +       IV       L     +     +  ++  LK +        
Sbjct: 67  LAVKCLGPLVSKVKEYQVETIV-----DTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121

Query: 311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS--EGGIRSLL 368
               LA      +  +L              E L  +          +V+     +  LL
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181

Query: 369 AYLDGPLP--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR 426
             L  P    ++  + AL +LV S    V + L     L+  L      +          
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIA 239

Query: 427 VCTSAEMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLV 469
             +     ++        PL++K      + +RE   QA  S V
Sbjct: 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 37/276 (13%), Positives = 98/276 (35%), Gaps = 21/276 (7%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKA 257
           +  + +L++  +  ++    +VI  L+     +N +  E +LP  +  ++      +   
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI--EHLLPLFLAQLKDECPEVRLNI 383

Query: 258 TISLQRLSM---SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQM 314
             +L  ++      +++++++       ++E+ +      + A       I  +P +   
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPA-----IVELAEDAKWRVRLAI------IEYMPLLAGQ 432

Query: 315 LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGP 374
           L  E     +  L    ++            NL    E   +       I  +LA    P
Sbjct: 433 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492

Query: 375 LPQ--ESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE 432
                 + +  +  L     Q++       P ++ +        +   A +L ++    +
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKH-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551

Query: 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL 468
              L  ++   P+L KL + +   V+  A +A++ L
Sbjct: 552 NSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 41/277 (14%)

Query: 234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSV 293
            +E +     R+  S     +  A  +L+ LS   +  R  VG   +  LI + QT  S 
Sbjct: 19  EAETIQKLCDRVASSTLLDDRRNAVRALKSLS---KKYRLEVGIQAMEHLIHVLQTDRSD 75

Query: 294 SQAAAAC--TLKNISAVPE-------------------VRQMLAEEGIVSVMIKLLDCGI 332
           S+       TL NI +  E                       + ++  V++++ LL+   
Sbjct: 76  SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD 135

Query: 333 LLGSKEYAAECLQNLTASNENLRRSVV--SEGGIRSLLAYLDGP--LPQESAVGALRNLV 388
               +    + L +L        + ++  S  G+  L+  L     + +   V  L+ L 
Sbjct: 136 -FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194

Query: 389 GSVS--QEVLISLGFFPRLVHVLKA-----GSLGAQQAAA--SALCRVCTSAEMKKLVGE 439
            S    Q+++     F RL+ ++       G +  +        L +   S +      E
Sbjct: 195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ--NFFKE 252

Query: 440 AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCR 476
                 +    E   +     +AQ +++L  + Q  R
Sbjct: 253 GSYIQRMKPWFEV-GDENSGWSAQKVTNLHLMLQLVR 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.98
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.84
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.58
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.57
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.55
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.54
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.53
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.53
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.45
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.31
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.31
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.29
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.29
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.28
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.28
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.25
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.22
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.21
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.19
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.18
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.15
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.13
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.1
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.09
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.02
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.99
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.93
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.92
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.81
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.59
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.56
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.54
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.53
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.42
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.31
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.25
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.23
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.22
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.22
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.2
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.18
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.14
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.07
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.05
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.71
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.59
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.38
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.34
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.29
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.12
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.95
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.78
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.71
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.68
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.64
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.6
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.49
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.33
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.13
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.12
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.03
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.87
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.81
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.66
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.44
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.42
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.05
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	94.98
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	94.79
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.58
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.39
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.09
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.38
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.31
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.31
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.28
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	92.87
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.82
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.64
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	92.23
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	91.84
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	91.66
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.18
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	89.88
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	89.67
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	89.56
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.34
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	89.24
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	85.82
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	83.49

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=8e-36  Score=315.05  Aligned_cols=358  Identities=18%  Similarity=0.191  Sum_probs=301.7

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--Cchh
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES--GSCE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~--~~~~  230 (534)
                      ...++.++..|++++++.+..|+.+|.+++..+++++..+++.|+|++|+++|+++++++|+.|+++|.+|+..  +++|
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            44699999999999999999999999999998999999999999999999999999999999999999999984  5699


Q ss_pred             HHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc------------------cCC
Q 009471          231 NWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------------------TGD  291 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~------------------~~~  291 (534)
                      ..+++.|+|++|+++|.+ .+..+++.++++|++|+.+++++..+++ ++++.|++++.                  ..+
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence            999999999999999998 5788999999999999999999999885 67999999872                  235


Q ss_pred             hHHHHHHHHHHHHccCCc-hHHHHHHh-hCcHHHHHHHhhc------CCChhHHHHHHHHHHHHccCChH-------HH-
Q 009471          292 SVSQAAAACTLKNISAVP-EVRQMLAE-EGIVSVMIKLLDC------GILLGSKEYAAECLQNLTASNEN-------LR-  355 (534)
Q Consensus       292 ~~~~~~a~~aL~nLa~~~-~~~~~i~e-~g~i~~L~~ll~~------~~~~~v~~~a~~~L~~La~~~~~-------~~-  355 (534)
                      +.++..|+++|+||+... +.+..+++ .|+++.|+.++++      .+. ..+++|+.+|.||+...+.       .. 
T Consensus       206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-KLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-HHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-HHHHHHHHHHHHhhccccccccchhhhhh
Confidence            789999999999999866 56999988 6778899999974      233 7899999999999974210       00 


Q ss_pred             -----------------HHHHhcCChHHHHHhhc---CCchHHHHHHHHHHhhcCc------cHHHHHhcCcHHHHHHHH
Q 009471          356 -----------------RSVVSEGGIRSLLAYLD---GPLPQESAVGALRNLVGSV------SQEVLISLGFFPRLVHVL  409 (534)
Q Consensus       356 -----------------~~i~~~g~l~~L~~~L~---~~~~~~~a~~aL~~La~~~------~~~~l~~~~~i~~Lv~lL  409 (534)
                                       +.+.+.++++.|+.++.   ++.+++.|+++|+|||...      .+..+.+.++++.|+.+|
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence                             11122234556777884   3678999999999998732      122344578899999999


Q ss_pred             hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCC--------ChHHHHHHHHHHHHhcCC-CcchHHHHh
Q 009471          410 KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAK--------PNSVREVAAQAISSLVTL-PQNCREVKR  480 (534)
Q Consensus       410 ~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~--------~~~v~~~A~~aL~~L~~~-~~~~~~~~~  480 (534)
                      .+++..+++.|+++|+||+.++..+..| ..|++|.|+++|.+.        +.+++..|+.+|.+|+.. +.+.+.+. 
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~-  442 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR-  442 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence            9999999999999999999887777766 678999999999865        467899999999999854 56666555 


Q ss_pred             hCCCHHHHHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471          481 DDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       481 ~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L~~~  514 (534)
                      +.|+++.|+++|.+. ..+.++++|..+|.+|..+
T Consensus       443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            589999999999885 3557999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=7.6e-36  Score=312.67  Aligned_cols=357  Identities=17%  Similarity=0.179  Sum_probs=303.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l  233 (534)
                      .++.++..|++++++.+..|+.+|.+++.+++..+..+++.|+++.|+++|++++++++..|+++|.+|+.+ ++++..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            488999999999999999999999999988887777889999999999999999999999999999999987 5699999


Q ss_pred             HhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc--------c--------CChHHHH
Q 009471          234 VSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ--------T--------GDSVSQA  296 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~--------~--------~~~~~~~  296 (534)
                      ++.|++++|+++|. ++++.+++.|+++|++|+.+++++..+.+ |+++.|+.++.        +        .++.++.
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999888998999 99999999993        2        2456677


Q ss_pred             HHHHHHHHccCCchHHHHHHhh-CcHHHHHHHhhc------CCChhHHHHHHHHHHHHccCC------------------
Q 009471          297 AAACTLKNISAVPEVRQMLAEE-GIVSVMIKLLDC------GILLGSKEYAAECLQNLTASN------------------  351 (534)
Q Consensus       297 ~a~~aL~nLa~~~~~~~~i~e~-g~i~~L~~ll~~------~~~~~v~~~a~~~L~~La~~~------------------  351 (534)
                      .|+++|+||+.+++++..+.+. |+++.|+.++.+      .+. .++++++.+|.|++...                  
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~-~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDD-KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTC-TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCch-HHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            9999999999998999999996 999999999985      233 68999999999997411                  


Q ss_pred             --------------------------------hHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-Ccc-H-
Q 009471          352 --------------------------------ENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVS-Q-  393 (534)
Q Consensus       352 --------------------------------~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~~-~-  393 (534)
                                                      +...+.+.+.++++.|+.+|.+   +.+++.|+++|+||+. ... . 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~  320 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence                                            0011233455678888888853   6789999999999997 222 1 


Q ss_pred             ---H-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCC------hHHHHHHHH
Q 009471          394 ---E-VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP------NSVREVAAQ  463 (534)
Q Consensus       394 ---~-~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~------~~v~~~A~~  463 (534)
                         + .+.+.|+++.|+++|.+++..+++.|+|+|.+++.+++.+..+. .|+++.|++++...+      .++...++.
T Consensus       321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~  399 (457)
T 1xm9_A          321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence               2 23368999999999999999999999999999999888777665 478999999998664      368889999


Q ss_pred             HHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          464 AISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       464 aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +|.++....+.....+.+.|+++.|++++.++.++.+++.|..+|.++..+
T Consensus       400 ~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence            999998655555555566899999999999873457999999999998754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.9e-35  Score=309.87  Aligned_cols=359  Identities=17%  Similarity=0.214  Sum_probs=311.3

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-h
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-C  229 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-~  229 (534)
                      ...+++++..++++|++.+.+|+..++++++.. ......+++.|+||.|+++|+.+ ++++|..|+++|.+|+...+ .
T Consensus        56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~  135 (510)
T 3ul1_B           56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  135 (510)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            445999999999999999999999999987532 22356788999999999999865 48999999999999987664 8


Q ss_pred             hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCC-----hHHHHHHHHHHH
Q 009471          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTLK  303 (534)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL~  303 (534)
                      +..+++.|++|.|+++|++++..+++.|+++|++|+.+ ++.+..+.+.|+++.|+.++...+     ...+..++++|.
T Consensus       136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  215 (510)
T 3ul1_B          136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  215 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999987 556778889999999999998754     346788999999


Q ss_pred             HccCCchHHHH-HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHH
Q 009471          304 NISAVPEVRQM-LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESA  380 (534)
Q Consensus       304 nLa~~~~~~~~-i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a  380 (534)
                      |++.+...... ....++++.|++++.+++. +++..++++|.+|+.+++.....+.+.|+++.|++++.+  +.++..+
T Consensus       216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a  294 (510)
T 3ul1_B          216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA  294 (510)
T ss_dssp             HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred             HHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence            99987643333 3347889999999998887 899999999999999888888888899999999999976  5689999


Q ss_pred             HHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          381 VGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       381 ~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      +++|+|++.  +.....+++.|+++.|+.+|.++++.+++.|+|+|.|++.+ ++.+..+.+.|+++.|+.++.+++.++
T Consensus       295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v  374 (510)
T 3ul1_B          295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  374 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence            999999987  34556788999999999999999999999999999999964 788899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          458 REVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       458 ~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +..|+++|++++..  ..+...++ +.|+++.|+.+|+.. +..+...++.+|.|+...
T Consensus       375 ~~~Aa~aL~Nl~~~~~~~~~~~L~-~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          375 QKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHH-HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHH-HCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999853  34444454 579999999999987 446889999999998764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8.4e-35  Score=317.02  Aligned_cols=362  Identities=18%  Similarity=0.172  Sum_probs=310.6

Q ss_pred             hhchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471          152 THGNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (534)
                      ....++.+++.|.++  +.+.+..|+..|..+..+.+ .+..++ +.|+++.|+++|+++++.++..|+++|.||+...+
T Consensus       375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~-vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE-CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH-HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence            445577788888887  88999999999999987544 444554 67999999999999999999999999999997431


Q ss_pred             ------------------------------hh---HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471          229 ------------------------------CE---NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (534)
Q Consensus       229 ------------------------------~~---~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~  275 (534)
                                                    .+   +.+++.|++++|+.+|+++++.+++.|+|+|.|++.+++++..+.
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv  533 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVV  533 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                                          12   678899999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH---HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471          276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML---AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (534)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i---~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~  352 (534)
                      ++|++++|+.++.++++..+..|+++|.||+.+.+....+   ...|+++.|+++|.++.....+..|+++|.||+..++
T Consensus       534 ~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          534 QEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNE  613 (810)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999999998643222211   1146899999999866442346789999999999888


Q ss_pred             HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHh-cCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLIS-LGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~-~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      ..+..+++.|+++.|++++.+  +.++..|+++|+||+. ++....+.+ .|.++.|+.++.+.+..+|+.|+|+|++++
T Consensus       614 ~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt  693 (810)
T 3now_A          614 SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT  693 (810)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999865  7799999999999998 555566665 689999999999999999999999999999


Q ss_pred             C-ChhHHHHHHh-cCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCC--CchhHHHHH
Q 009471          429 T-SAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS--PQNTAKKYA  504 (534)
Q Consensus       429 ~-~~~~~~~i~~-~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~~~k~~a  504 (534)
                      . +++..+.+.+ .|+++.|++++.+++.+++..|+++|++++.........+.+.|++++|+.+|...  .+..+...|
T Consensus       694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A  773 (810)
T 3now_A          694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA  773 (810)
T ss_dssp             HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence            7 6888888888 89999999999999999999999999999876554555566689999999999755  245688999


Q ss_pred             HHHHHhhchh
Q 009471          505 VACLASLSPS  514 (534)
Q Consensus       505 ~~~L~~L~~~  514 (534)
                      ..+|.++...
T Consensus       774 l~aL~~ll~~  783 (810)
T 3now_A          774 TQCLAAAERY  783 (810)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999988654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=9.9e-34  Score=302.51  Aligned_cols=360  Identities=17%  Similarity=0.214  Sum_probs=312.7

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-  228 (534)
                      ....++.++..+++++++.+..|+..+..++.. .......+++.|+||.|+++|+.+ ++.++..|+++|.+++...+ 
T Consensus        74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~  153 (529)
T 3tpo_A           74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE  153 (529)
T ss_dssp             SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            345689999999999999999999999998753 223456788999999999999765 49999999999999998775 


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCC-----hHHHHHHHHHH
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGD-----SVSQAAAACTL  302 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~-----~~~~~~a~~aL  302 (534)
                      .+..+++.|+++.|+.+|.+++..+++.|+++|.+|+.+ ++++..+.+.|+++.|+.++...+     ......++++|
T Consensus       154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  233 (529)
T 3tpo_A          154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  233 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999986 567788899999999999998654     34678899999


Q ss_pred             HHccCCchHHHH-HHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHH
Q 009471          303 KNISAVPEVRQM-LAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQES  379 (534)
Q Consensus       303 ~nLa~~~~~~~~-i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~  379 (534)
                      .|++.+...... ....++++.|+.++.++++ +++..++++|.+++.+++.....+...|+++.|+.++.+  +.++..
T Consensus       234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  312 (529)
T 3tpo_A          234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  312 (529)
T ss_dssp             HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence            999987643333 3347889999999998887 899999999999999888888889999999999999977  568999


Q ss_pred             HHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChH
Q 009471          380 AVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNS  456 (534)
Q Consensus       380 a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~  456 (534)
                      ++.+|+|++.  +.....+++.|+++.|+.+|.++++.+++.|+|+|+|++.+ ++.+..+.+.|++|.|+.++.+++.+
T Consensus       313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~  392 (529)
T 3tpo_A          313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK  392 (529)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence            9999999997  34556788999999999999999999999999999999964 78888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          457 VREVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       457 v~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++..|+++|++++..  .++...++ +.|+++.|+.+|+.. +..+...++.+|.|+...
T Consensus       393 v~~~A~~aL~nl~~~~~~~~~~~l~-~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          393 TQKAAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHH-HCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            999999999999853  33444444 579999999999987 456888999999998754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-33  Score=300.47  Aligned_cols=358  Identities=19%  Similarity=0.244  Sum_probs=314.1

Q ss_pred             hchHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      ...|+.|+..|+. ++++.+..|+.+|.+++.+++.....+++.|+|+.|+.+|+++++++++.|+++|++|+.+.+ ++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r  197 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR  197 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence            4579999999974 568899999999999999999998999999999999999999999999999999999998765 89


Q ss_pred             HHHHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHhhcChhhHHH-HHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 009471          231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMARA-IVGHGGVRPLIEICQTGDSVSQAAAACTLKN  304 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~Ls~~~~~~~~-l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  304 (534)
                      ..+++.|++++|+.+|...+     ......++++|.+++.+.+.... ....++++.|+.++.+++++++..++++|.+
T Consensus       198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~  277 (529)
T 3tpo_A          198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  277 (529)
T ss_dssp             HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            99999999999999998753     34678899999999987654333 3336788999999999999999999999999


Q ss_pred             ccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHH
Q 009471          305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV  381 (534)
Q Consensus       305 La~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~  381 (534)
                      ++.++ +....+.+.|+++.|++++.+++. .++..++.+|+|++.+++..+..+++.|+++.|+.++.+  +.++..|+
T Consensus       278 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~  356 (529)
T 3tpo_A          278 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  356 (529)
T ss_dssp             HHSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhccchHHHHHHhcCCCh-hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence            99976 555667789999999999998886 899999999999999999999999999999999999987  56899999


Q ss_pred             HHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       382 ~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      ++|+||+.  ......+.+.|+++.|+.++.+++..++..|+|+|+|++.  +++....+.+.|+++.|++++.++++.+
T Consensus       357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i  436 (529)
T 3tpo_A          357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI  436 (529)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence            99999998  3455677899999999999999999999999999999985  4788899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC------CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          458 REVAAQAISSLVTL------PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       458 ~~~A~~aL~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      +..++++|.++...      ......++.+.|++..+..|.+++ ++++.+.|..+|-..-
T Consensus       437 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~~A~~iie~yf  496 (529)
T 3tpo_A          437 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKASLNLIEKYF  496 (529)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCS-SHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHC
Confidence            99999999998732      222345677889999988887765 5678899988886654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.5e-33  Score=299.65  Aligned_cols=359  Identities=18%  Similarity=0.241  Sum_probs=313.1

Q ss_pred             hchHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      ...|+.|+..|+. ++++.+..|+.+|.+++.++++++..+++.|+||.|+++|+++++++++.|+++|++|+.+.+ ++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            3569999999974 568899999999999999999999999999999999999999999999999999999999875 89


Q ss_pred             HHHHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHhhcChhhHHH-HHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 009471          231 NWLVSEGVLPPLIRLVESGS-----TVGKEKATISLQRLSMSAEMARA-IVGHGGVRPLIEICQTGDSVSQAAAACTLKN  304 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~~Ls~~~~~~~~-l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~n  304 (534)
                      ..+.+.|++++|+.+|.+.+     ....+.++++|.+++.+...... ....++++.|+.++.+++++++..++++|++
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~  258 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  258 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999998754     34678899999999987654332 3336788999999999999999999999999


Q ss_pred             ccCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHH
Q 009471          305 ISAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAV  381 (534)
Q Consensus       305 La~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~  381 (534)
                      |+..+ +....+.+.|+++.|++++.+++. .++..++.+|+|++.+++..+..+++.|+++.|..++.+  +.++..|+
T Consensus       259 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~  337 (510)
T 3ul1_B          259 LTDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  337 (510)
T ss_dssp             HTSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred             HhhchhhhHHHHHhcccchhhhhhhcCCCh-hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence            99876 455567789999999999998887 899999999999999999999999999999999999987  56899999


Q ss_pred             HHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          382 GALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       382 ~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      ++|+||+.  ......+.+.|+++.|+.++.+++..+++.|+++|.|++.  +.+....+.+.|+++.|++++.++++.+
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i  417 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI  417 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence            99999997  3456678899999999999999999999999999999985  4788899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC------CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          458 REVAAQAISSLVTL------PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       458 ~~~A~~aL~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      +..++++|.++...      ......++.+.|++..+-.|..++ ++++.+.|..+|-..-.
T Consensus       418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~-n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCC
Confidence            99999999998732      122345677889999988887665 55788999988866543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=8.4e-33  Score=295.51  Aligned_cols=363  Identities=15%  Similarity=0.191  Sum_probs=318.4

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCC-c
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESG-S  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~-~  228 (534)
                      ....++.++..|.+++++.+..|+..|.+++...+ .....+++.|+++.|+++|++++ +.++..|+++|.+++... +
T Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            34569999999999999999999999999987554 55677888899999999999987 999999999999999975 4


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHcc
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa  306 (534)
                      .+..+++.|+++.|+.+|.++++.+++.|+++|.+|+.+ ++.+..+...|+++.|+.++ .+.++.++..++++|.+|+
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999976 55677888899999999999 6778999999999999999


Q ss_pred             CCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471          307 AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (534)
Q Consensus       307 ~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL  384 (534)
                      ............|+++.|++++.+++. .++..++++|.+++.+.+...+.+++.|+++.|+.+|.+  +.++..|+++|
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L  310 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLIHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV  310 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence            875444444568999999999998886 899999999999999888777888899999999999977  56899999999


Q ss_pred             HHhhc--CccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (534)
Q Consensus       385 ~~La~--~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~  460 (534)
                      +||+.  +.....+++.|+++.|+.+|.++ ++.++..|+++|.+++. +++....+.+.|+++.|++++.++++.++..
T Consensus       311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~  390 (528)
T 4b8j_A          311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE  390 (528)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            99998  34456778899999999999998 99999999999999996 4777888899999999999999999999999


Q ss_pred             HHHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHH
Q 009471          461 AAQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARK  517 (534)
Q Consensus       461 A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~  517 (534)
                      |+++|.+++..  +.+...+. +.+.++.|+.+|+.. +..++..++.+|.++.....+
T Consensus       391 a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~  447 (528)
T 4b8j_A          391 AAWAISNATSGGSHDQIKYLV-SEGCIKPLCDLLICP-DIRIVTVCLEGLENILKVGET  447 (528)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999955  44444454 579999999999986 457899999999999876443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=291.84  Aligned_cols=357  Identities=18%  Similarity=0.207  Sum_probs=283.8

Q ss_pred             hhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC------------CHHHHHHHHH
Q 009471          151 TTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT------------SPRIREKTVT  218 (534)
Q Consensus       151 ~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~------------~~~v~~~A~~  218 (534)
                      .....++.++..+.+.+.+   +..+.|..+... ++.+..+++.|.+|.|+++|+..            +++++..|++
T Consensus        29 ~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~  104 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA  104 (458)
T ss_dssp             ----------------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence            3445578888888777766   366677777664 44667788999999999999863            3799999999


Q ss_pred             HHHHhhcCCc-hhHHHHhcCCH----------HHHHHHHccCC--HH-----HHH-------HHHHHHHHhhcChhhHHH
Q 009471          219 VICSLAESGS-CENWLVSEGVL----------PPLIRLVESGS--TV-----GKE-------KATISLQRLSMSAEMARA  273 (534)
Q Consensus       219 ~L~~La~~~~-~~~~l~~~g~i----------~~Lv~lL~~~~--~~-----~~~-------~A~~~L~~Ls~~~~~~~~  273 (534)
                      +|.+|+...+ ......+.+++          +.+++++.+..  .+     +++       +|+++|.|++.+++++..
T Consensus       105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~  184 (458)
T 3nmz_A          105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA  184 (458)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999998664 55555556666          55667776542  12     444       899999999999999999


Q ss_pred             HHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCch-HHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471          274 IVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPE-VRQMLAE-EGIVSVMIKLLDCGILLGSKEYA  340 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~-~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a  340 (534)
                      +.+.|++++|+.++..           .++.++..|+++|.||+.+++ ++..+.. .|+|+.|+.+|.+++. ++++.+
T Consensus       185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A  263 (458)
T 3nmz_A          185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI  263 (458)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHH
T ss_pred             HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHH
Confidence            9999999999999952           246789999999999998764 6666654 6679999999998886 899999


Q ss_pred             HHHHHHHccC-ChHHHHHHHhcCChHHHHHhh-cC--CchHHHHHHHHHHhhc-C-ccHHHHH-hcCcHHHHHHHHhcCC
Q 009471          341 AECLQNLTAS-NENLRRSVVSEGGIRSLLAYL-DG--PLPQESAVGALRNLVG-S-VSQEVLI-SLGFFPRLVHVLKAGS  413 (534)
Q Consensus       341 ~~~L~~La~~-~~~~~~~i~~~g~l~~L~~~L-~~--~~~~~~a~~aL~~La~-~-~~~~~l~-~~~~i~~Lv~lL~~~~  413 (534)
                      +++|.||+.. ++.++..+.+.|+++.|+++| .+  +.+++.++.+|+||+. . +++..+. ..|+++.|+.+|.+++
T Consensus       264 ~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~  343 (458)
T 3nmz_A          264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS  343 (458)
T ss_dssp             HHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCC
Confidence            9999999985 678899999999999999975 43  5689999999999998 4 5566676 7899999999998765


Q ss_pred             H----HHHHHHHHHHHHhcC----ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC-CCcchHHHHhhCCC
Q 009471          414 L----GAQQAAASALCRVCT----SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKS  484 (534)
Q Consensus       414 ~----~v~~~A~~aL~~la~----~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~  484 (534)
                      +    .+++.|+++|++++.    +++++..+.+.|+++.|++++.+++..+++.|+++|++|+. ++.++..+. +.|+
T Consensus       344 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~G~  422 (458)
T 3nmz_A          344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGA  422 (458)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHH-HHTH
T ss_pred             CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHH-HCCC
Confidence            4    599999999999994    78999999999999999999999999999999999999995 456655555 4799


Q ss_pred             HHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          485 VPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       485 v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++.|+.+|+++ +..+++.|..+|.||+.+
T Consensus       423 I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          423 VSMLKNLIHSK-HKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHTTTTCS-SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence            99999999886 457899999999999865

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.8e-33  Score=306.50  Aligned_cols=368  Identities=17%  Similarity=0.199  Sum_probs=310.8

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCc----HHHHHHHhcCC--CHHHHHHHHHHHHHhhcC
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSN----IAALVQLLTAT--SPRIREKTVTVICSLAES  226 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~----v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~  226 (534)
                      ..++.|...++++++..+..|+..|.++..... +.....++.|+    ++.|+++|.++  ++++++.|+++|..|+.+
T Consensus       330 ~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~  409 (810)
T 3now_A          330 QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD  409 (810)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS
T ss_pred             cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence            346778888888888899999999999974321 12123334454    56688888887  799999999999999999


Q ss_pred             CchhHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh------------------------------hH---H
Q 009471          227 GSCENWLVS-EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE------------------------------MA---R  272 (534)
Q Consensus       227 ~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~------------------------------~~---~  272 (534)
                      ++.|..++. .|+++.|+.+|++++..++..|+++|.|++..++                              .+   +
T Consensus       410 ~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          410 AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            998888875 6999999999999999999999999999997532                              12   6


Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC-C
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS-N  351 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~-~  351 (534)
                      .+++.|+++.|+.++.++++.++..|+++|.|++.+++++..+++.|+++.|+.++.++++ ..++.|+++|.+|+.+ +
T Consensus       490 ~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~-~~k~~Aa~AL~nL~~~~~  568 (810)
T 3now_A          490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE-KGKRHATQALARIGITIN  568 (810)
T ss_dssp             HHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH-HHHHHHHHHHHHHhcCCC
Confidence            7888999999999999999999999999999999988999999999999999999999887 7899999999999874 3


Q ss_pred             hHHHH-HHHhcCChHHHHHhhcCC-c--hHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 009471          352 ENLRR-SVVSEGGIRSLLAYLDGP-L--PQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALC  425 (534)
Q Consensus       352 ~~~~~-~i~~~g~l~~L~~~L~~~-~--~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~  425 (534)
                      +.... .....+++++|+++|.++ .  .+..|+++|.||+.  +.....+++.|+++.|+.++.++++.+|+.|+++|+
T Consensus       569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~  648 (810)
T 3now_A          569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLC  648 (810)
T ss_dssp             HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred             hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            32210 001135899999999753 3  34689999999998  356778899999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHh-cCchHHHHHhhcCCChHHHHHHHHHHHHhcC-CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHH
Q 009471          426 RVCTSAEMKKLVGE-AGCTPLLIKLLEAKPNSVREVAAQAISSLVT-LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY  503 (534)
Q Consensus       426 ~la~~~~~~~~i~~-~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~-~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~  503 (534)
                      ||+.+++.+..+.+ .|.++.|+.++.+++..+|..|+++|++|+. .+.+.+.++...++++.|+++|.++ +..++..
T Consensus       649 NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~  727 (810)
T 3now_A          649 NLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHR  727 (810)
T ss_dssp             HHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHH
T ss_pred             HHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHH
Confidence            99999888888875 6899999999999999999999999999997 5667777776579999999999986 5579999


Q ss_pred             HHHHHHhhchhHHHHHHHHh
Q 009471          504 AVACLASLSPSARKLLERLE  523 (534)
Q Consensus       504 a~~~L~~L~~~~k~~~~~l~  523 (534)
                      |+++|.|++.+.++..+.+.
T Consensus       728 A~~aL~NL~~~s~e~~~~l~  747 (810)
T 3now_A          728 GIVIILNMINAGEEIAKKLF  747 (810)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH
Confidence            99999999987666655554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=290.84  Aligned_cols=318  Identities=19%  Similarity=0.194  Sum_probs=273.2

Q ss_pred             chHHHHHHHHhc------------CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcH----------HHHHHHhcCCC--
Q 009471          154 GNTRELLARLQI------------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI----------AALVQLLTATS--  209 (534)
Q Consensus       154 ~~i~~Ll~~L~~------------~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v----------~~Lv~lL~~~~--  209 (534)
                      ..++.|++.|+.            ++++.+.+|+.+|.+++..+++......+.|.+          +.+++++.+..  
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            457888999985            447999999999999999888776666666666          66777777652  


Q ss_pred             HH-----HHH-------HHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhc
Q 009471          210 PR-----IRE-------KTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLSM  266 (534)
Q Consensus       210 ~~-----v~~-------~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~  266 (534)
                      .+     +++       .|+++|.+++.++++|+.+++.|++++|+.+|..           .++.+++.|+++|.+|+.
T Consensus       150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~  229 (458)
T 3nmz_A          150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF  229 (458)
T ss_dssp             SCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC
Confidence            22     555       9999999999998899999999999999999952           246789999999999998


Q ss_pred             Chh-hHHHHHhCCC-hHHHHHHHccCChHHHHHHHHHHHHccCC--chHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHH
Q 009471          267 SAE-MARAIVGHGG-VRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAA  341 (534)
Q Consensus       267 ~~~-~~~~l~~~g~-i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~  341 (534)
                      +++ ++..+...+| |+.|+.+|.+++++++..++++|+||+..  ++++..+++.|+++.|+++|. +++. .+++.++
T Consensus       230 ~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~-~v~~~A~  308 (458)
T 3nmz_A          230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVL  308 (458)
T ss_dssp             TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH-HHHHHHH
T ss_pred             CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH-HHHHHHH
Confidence            765 5666665555 99999999999999999999999999984  578999999999999999864 4554 8999999


Q ss_pred             HHHHHHccCChHHHHHHH-hcCChHHHHHhhcC--C----chHHHHHHHHHHhhc-----CccHHHHHhcCcHHHHHHHH
Q 009471          342 ECLQNLTASNENLRRSVV-SEGGIRSLLAYLDG--P----LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVL  409 (534)
Q Consensus       342 ~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L~~--~----~~~~~a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL  409 (534)
                      .+|+||+.+++.++..+. ..|+++.|+++|.+  +    .+++.|+++|+||+.     ++.+..+.+.|+++.|+.+|
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL  388 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  388 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence            999999986667777777 79999999999975  2    279999999999983     45667888999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471          410 KAGSLGAQQAAASALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (534)
Q Consensus       410 ~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~  472 (534)
                      ++++..++++|+++|+|++ .+++.+..+.+.|+++.|+++++++++.+++.|+++|.+|+.+.
T Consensus       389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999 56999999999999999999999999999999999999998664

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.5e-31  Score=286.00  Aligned_cols=363  Identities=17%  Similarity=0.215  Sum_probs=318.2

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-  228 (534)
                      ....++.++..|++++++.+..|+..|.+++... ......+++.|+++.|+++|+++ ++.+|..|+++|.+++...+ 
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            4456999999999999999999999999997642 33456677889999999999997 79999999999999998764 


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                      .+..++..|+++.|+.+|.++++.+++.|+++|.+++.+ ++.+..+...|+++.|+.++.+.++.++..++++|.+|+.
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            788888999999999999999999999999999999987 5667788889999999999999999999999999999998


Q ss_pred             Cc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471          308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (534)
Q Consensus       308 ~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL  384 (534)
                      +. .........++++.|+.++.+++. .++..++++|.+++...+.....+++.|+++.|+.++.+  +.++..|+++|
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            65 444455668999999999998876 899999999999999888888888899999999999976  55899999999


Q ss_pred             HHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          385 RNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       385 ~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      ++++.  +.....+.+.|+++.|+.+|.++++.++..|+++|.+++. +++..+.+.+.|+++.|++++.++++.++..|
T Consensus       324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  403 (530)
T 1wa5_B          324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  403 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99997  3445567788999999999999999999999999999996 47778888899999999999999999999999


Q ss_pred             HHHHHHhcCC--C--cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHH
Q 009471          462 AQAISSLVTL--P--QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARK  517 (534)
Q Consensus       462 ~~aL~~L~~~--~--~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~  517 (534)
                      +++|.+++..  +  .....+. +.+.++.|+.+|+.. +..++..++.+|.++......
T Consensus       404 ~~aL~~l~~~~~~~~~~~~~l~-~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~  461 (530)
T 1wa5_B          404 CWAISNASSGGLQRPDIIRYLV-SQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEA  461 (530)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHH-HTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHH-HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence            9999999853  3  4555655 479999999999986 457999999999999886543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=5.6e-32  Score=289.10  Aligned_cols=360  Identities=17%  Similarity=0.231  Sum_probs=320.0

Q ss_pred             hchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          153 HGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      ...++.|+..|.+++ ++.+..|+.+|.+++.++++++..+++.|+++.|+.+|+++++.+++.|+++|++++.+.+ ++
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            457999999999887 9999999999999999889999999999999999999999999999999999999998765 78


Q ss_pred             HHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          231 NWLVSEGVLPPLIRLV-ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      ..+...|++++|+.+| .+.+..++..++++|.+|+...+........|+++.|+.++.++++.++..++++|.+++..+
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999 567899999999999999987554444456899999999999999999999999999999876


Q ss_pred             hH-HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHH
Q 009471          310 EV-RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALR  385 (534)
Q Consensus       310 ~~-~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~  385 (534)
                      +. ...+.+.|+++.|+.++.+++. .++..|+.+|++++.+++...+.+++.|+++.|+.+|.+   +.++..|+++|+
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~  354 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHPSP-SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS  354 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCCCh-hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            44 4677789999999999998886 899999999999999888888899999999999999965   458999999999


Q ss_pred             Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      ||+.  ......+.+.|+++.|+.+|.++++.++..|+++|.+++..  ++....+.+.|+++.|++++.++++.++..+
T Consensus       355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~a  434 (528)
T 4b8j_A          355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC  434 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            9997  33445677889999999999999999999999999999964  7889999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcc-----------hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +.+|.+|+...+.           ....+.+.+++..+..+.++. ++.++.+|..+|.++...
T Consensus       435 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          435 LEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHD-NNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCCC
Confidence            9999999854332           355666789999999988775 557999999999988765

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3e-31  Score=283.67  Aligned_cols=360  Identities=16%  Similarity=0.214  Sum_probs=318.8

Q ss_pred             hchHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          153 HGNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      ...++.|+..|.++ +++.+..|+.+|.+++..++.....+++.|+++.|+.+|+++++.+++.|+++|++++.+.+ ++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            35689999999987 89999999999999999888888888899999999999999999999999999999998864 88


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      ..+...|+++.|+.++.+.+..++..|+++|.+|+.+. +........++++.|+.++.++++.++..++++|.+|+...
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999999999775 44445556899999999999999999999999999999864


Q ss_pred             -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                       +....+.+.|+++.|+.++.+++. .++..++.+|.+++.+++...+.+++.|+++.|+.+|.+  +.++..|+++|++
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~  367 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  367 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCCh-hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence             667778889999999999998776 899999999999999888888888999999999999987  4689999999999


Q ss_pred             hhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--h--hHHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471          387 LVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--A--EMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (534)
Q Consensus       387 La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~--~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~  460 (534)
                      ++.  +.....+++.++++.|+.+|.++++.++..|+++|.+++..  +  +..+.+.+.|+++.|+.++.++++.++..
T Consensus       368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  447 (530)
T 1wa5_B          368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV  447 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence            997  33445677899999999999999999999999999999853  4  78888999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcc-----------hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          461 AAQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       461 A~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++++|.+++...++           ....+.+.|+++.|..++++. +..++..|..+|.++...
T Consensus       448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~-~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE-NDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS-CHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCCc
Confidence            99999999854332           234455689999999988875 557999999999887754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.1e-31  Score=283.61  Aligned_cols=337  Identities=17%  Similarity=0.197  Sum_probs=271.2

Q ss_pred             HHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhHHHHhcCCHHHHHHHHccCCH
Q 009471          173 KALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENWLVSEGVLPPLIRLVESGST  251 (534)
Q Consensus       173 ~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~l~~~g~i~~Lv~lL~~~~~  251 (534)
                      .++..|-.+.++.++  ..-...+.++.|+++|.++++++|..|+++|.+++. +++++..+++.|+|++|+++|++++.
T Consensus        27 ~~~~~~~~~~~~~~~--~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~  104 (584)
T 3l6x_A           27 GSLASLDSLRKGGPP--PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK  104 (584)
T ss_dssp             -------------CC--CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH
T ss_pred             chHHHHHHHHhcCCC--CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH
Confidence            445555555543231  122356889999999999999999999999999997 45699999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh
Q 009471          252 VGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL  328 (534)
Q Consensus       252 ~~~~~A~~~L~~Ls~--~~~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll  328 (534)
                      .+++.|+++|.+|+.  +++++..+.+.|+|+.|+.+|++ ++..++..++++|+||+..++++..|++ ++++.|++++
T Consensus       105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL  183 (584)
T 3l6x_A          105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEV  183 (584)
T ss_dssp             HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHH
Confidence            999999999999998  48899999999999999999997 5788999999999999999999999996 5699999987


Q ss_pred             h-----------------cCCChhHHHHHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------CchHHHHHH
Q 009471          329 D-----------------CGILLGSKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVG  382 (534)
Q Consensus       329 ~-----------------~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~~~~~a~~  382 (534)
                      .                 +..+..++++|.++|.||+..+++.|..+.+. |+++.|+.++++        ...++.|++
T Consensus       184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~  263 (584)
T 3l6x_A          184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC  263 (584)
T ss_dssp             HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred             hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence            2                 11124789999999999999888889889875 556799998852        357899999


Q ss_pred             HHHHhhcCc---c------------------------HHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC----
Q 009471          383 ALRNLVGSV---S------------------------QEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS----  430 (534)
Q Consensus       383 aL~~La~~~---~------------------------~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~----  430 (534)
                      +|+||+...   .                        .+.+...+.++.|+.+|+ +.++.+++.|+++|.||+.+    
T Consensus       264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~  343 (584)
T 3l6x_A          264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY  343 (584)
T ss_dssp             HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence            999999731   0                        011122345678899996 56799999999999999854    


Q ss_pred             -hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCC-------chhHHH
Q 009471          431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSP-------QNTAKK  502 (534)
Q Consensus       431 -~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-------~~~~k~  502 (534)
                       ...+..+.+.+++|.|++|+.+++..++..|+++|.||+.++.++..+ . .++++.|+++|..+.       .+++..
T Consensus       344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~  421 (584)
T 3l6x_A          344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVI  421 (584)
T ss_dssp             HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHH
T ss_pred             cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHhcCCcccccccchHHHHH
Confidence             234556667789999999999999999999999999999988887665 3 489999999998762       245778


Q ss_pred             HHHHHHHhhchh
Q 009471          503 YAVACLASLSPS  514 (534)
Q Consensus       503 ~a~~~L~~L~~~  514 (534)
                      .++.+|.||+..
T Consensus       422 ~a~~tL~NL~a~  433 (584)
T 3l6x_A          422 SILNTINEVIAE  433 (584)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC
Confidence            899999999755

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.8e-31  Score=275.58  Aligned_cols=357  Identities=17%  Similarity=0.249  Sum_probs=312.5

Q ss_pred             chHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhH
Q 009471          154 GNTRELLARLQIG-HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN  231 (534)
Q Consensus       154 ~~i~~Ll~~L~~~-~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~  231 (534)
                      ..++.++..|+++ +++.+..|+..|.+++..+++....+++.|+++.|+++|+++++++|+.|+++|++++.+.+ .+.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            4689999999998 89999999999999999888887888889999999999999999999999999999999875 888


Q ss_pred             HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          232 WLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                      .+++.|+++.|++++++ .+..++..++++|.+++.+.  .....+. .++++.|+.++.++++.++..++++|.+++..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            89999999999999996 68999999999999999764  2222232 78999999999999999999999999999985


Q ss_pred             c-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHH
Q 009471          309 P-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALR  385 (534)
Q Consensus       309 ~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~  385 (534)
                      . +....+.+.|+++.+++++.+++. .++..++.+|.+++.+++..++.+.+.|+++.|++++++  +.++..|+++|+
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~  301 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS  301 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCch-hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            4 677778889999999999998776 899999999999999888888888899999999999987  468999999999


Q ss_pred             Hhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          386 NLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       386 ~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      +++.  +.....+.+.++++.|+.++.++++.++..|+++|.+++.  +++..+.+.+.|+++.|++++.++++.++..|
T Consensus       302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  381 (450)
T 2jdq_A          302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA  381 (450)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence            9997  3445567788999999999999999999999999999985  46778888899999999999999999999999


Q ss_pred             HHHHHHhcCCCcc-----------hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          462 AQAISSLVTLPQN-----------CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       462 ~~aL~~L~~~~~~-----------~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      +++|.+++...++           ....+.+.|+++.|..++++. +..++..|..+|.++-.
T Consensus       382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE-NQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH-HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHCC
Confidence            9999999854332           124455678999999988765 55789999999887653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.9e-30  Score=276.84  Aligned_cols=357  Identities=20%  Similarity=0.233  Sum_probs=303.4

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENW  232 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~  232 (534)
                      ..++.++..|++++++.+..|+..|.+++..++..+..+.+.|+++.|++++++++++++..++.+|.+++... +++..
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~  180 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            46899999999999999999999999999887777788888899999999999999999999999999999864 58889


Q ss_pred             HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH------------------------
Q 009471          233 LVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC------------------------  287 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll------------------------  287 (534)
                      +.+.|+++.|+++|+++ +...++.++.+|.+++.+++++..+.+.|+++.|+.++                        
T Consensus       181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  260 (529)
T 1jdh_A          181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence            99999999999999986 44567788999999999888888888878776665554                        


Q ss_pred             ---------------ccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccC
Q 009471          288 ---------------QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       288 ---------------~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~  350 (534)
                                     .++++.++..++++|++|+.++ +++..+.+.|+++.+++++.+ ++...+++.++.+|+|++..
T Consensus       261 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence                           4456777888888999998854 688899999999999999975 33248999999999999986


Q ss_pred             ChH---HHHHHHhcCChHHHHHhhcC--C-chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHH--
Q 009471          351 NEN---LRRSVVSEGGIRSLLAYLDG--P-LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA--  421 (534)
Q Consensus       351 ~~~---~~~~i~~~g~l~~L~~~L~~--~-~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~--  421 (534)
                      ++.   .+..+.+.|+++.|++++.+  + .++..++++|+|++. +.....+.+.|+++.|+.+++++++.+++.|+  
T Consensus       341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  420 (529)
T 1jdh_A          341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG  420 (529)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc
Confidence            433   57788899999999999976  2 688999999999998 66677888999999999999887777776555  


Q ss_pred             --------------------HHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471          422 --------------------SALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD  481 (534)
Q Consensus       422 --------------------~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~  481 (534)
                                          .+|++++.+++++..+.+.|+++.|++++.+++++++..|+.+|.+++.+++++..+ .+
T Consensus       421 l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i-~~  499 (529)
T 1jdh_A          421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI-EA  499 (529)
T ss_dssp             -----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHH-HH
T ss_pred             cCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence                                455567777888899999999999999999999999999999999998766665555 45


Q ss_pred             CCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      .++++.|..+++++ ++.++.+|..+|.+|+
T Consensus       500 ~~~~~~L~~l~~~~-~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          500 EGATAPLTELLHSR-NEGVATYAAAVLFRMS  529 (529)
T ss_dssp             TTCHHHHHHGGGCS-SHHHHHHHHHHHHHHC
T ss_pred             cCChHHHHHHhcCC-CHHHHHHHHHHHHhcC
Confidence            79999999999886 5579999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=8.6e-31  Score=274.30  Aligned_cols=314  Identities=19%  Similarity=0.204  Sum_probs=266.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHH
Q 009471          197 NIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAI  274 (534)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l  274 (534)
                      .++.|+++|+++++++|..|+++|.+++.+++ .+..+++.|+++.|+++|+++++.+++.|+++|.+|+.. ++++..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58999999999999999999999999997665 687999999999999999999999999999999999986 8899999


Q ss_pred             HhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh--------cCC-------ChhHHH
Q 009471          275 VGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--------CGI-------LLGSKE  338 (534)
Q Consensus       275 ~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~--------~~~-------~~~v~~  338 (534)
                      ++.|+++.|+++|. ++++.++..++++|+||+.+++++..+++ |+++.|++++.        ++.       +..+..
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999999999999 99999999993        221       225666


Q ss_pred             HHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------CchHHHHHHHHHHhhcC-------------------
Q 009471          339 YAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVGS-------------------  390 (534)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~~~~~a~~aL~~La~~-------------------  390 (534)
                      +|+++|.||+.+ +.++..+.+. |+++.|++++++        ....+.|+.+|+||+..                   
T Consensus       162 ~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          162 NATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            999999999986 8889889887 999999999963        45789999999999731                   


Q ss_pred             ---------------------------------ccHHHHHhcCcHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC-h----
Q 009471          391 ---------------------------------VSQEVLISLGFFPRLVHVLKAG-SLGAQQAAASALCRVCTS-A----  431 (534)
Q Consensus       391 ---------------------------------~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~A~~aL~~la~~-~----  431 (534)
                                                       ...+.+.+.++++.|+.+|.+. ++.+++.|+|+|.|++.. .    
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~  320 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence                                             0112334566788999999654 689999999999999964 2    


Q ss_pred             hH-HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCc-----hhHHHHHH
Q 009471          432 EM-KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQ-----NTAKKYAV  505 (534)
Q Consensus       432 ~~-~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~-----~~~k~~a~  505 (534)
                      .. +..+.+.|++|.|++++.+++.+++..|+++|.+|+.+..++..+..  ++++.|+++|...+.     ..+...+.
T Consensus       321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l  398 (457)
T 1xm9_A          321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence            23 33445689999999999999999999999999999988777655543  789999999987632     34677888


Q ss_pred             HHHHhhchh
Q 009471          506 ACLASLSPS  514 (534)
Q Consensus       506 ~~L~~L~~~  514 (534)
                      .+|.++..+
T Consensus       399 ~~l~ni~~~  407 (457)
T 1xm9_A          399 YTVRNLMAS  407 (457)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999998765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.3e-30  Score=270.39  Aligned_cols=356  Identities=16%  Similarity=0.178  Sum_probs=308.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhh--cChHhHHHHhcC-CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCC-chh
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMK--EDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESG-SCE  230 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~--~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~-~~~  230 (534)
                      ++.++..|++++++.+..|+..|..++.  .++.. ..+++. |+++.|+++|+++ ++.+|..|+++|.+++... +..
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            7889999999999999999999999875  33333 456666 9999999999998 7999999999999999865 466


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCC
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~  308 (534)
                      ..+++.|+++.|+++|+++++.+++.|+++|.+++.+. +.+..+...|+++.|+.++.+ .++.++..++++|++++.+
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            77888999999999999999999999999999999874 567778889999999999995 7899999999999999975


Q ss_pred             c--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471          309 P--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (534)
Q Consensus       309 ~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL  384 (534)
                      .  .....+. .++++.+++++.+++. .++..++++|.+++...+..+..+.+.|+++.|++++.+  +.++..|+++|
T Consensus       181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  258 (450)
T 2jdq_A          181 KSPPPEFAKV-SPCLNVLSWLLFVSDT-DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV  258 (450)
T ss_dssp             SSSCCCGGGT-GGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHccCCH-HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence            3  3323333 7899999999998876 899999999999999877778888899999999999976  56899999999


Q ss_pred             HHhhcC--ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          385 RNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       385 ~~La~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      ++++..  .....+.+.|+++.|+.++.++++.++..|+++|.+++. +++..+.+.+.|+++.|++++.++++.+|..|
T Consensus       259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a  338 (450)
T 2jdq_A          259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA  338 (450)
T ss_dssp             HHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            999982  334557788999999999999999999999999999996 57788888889999999999999999999999


Q ss_pred             HHHHHHhcCC--CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHH
Q 009471          462 AQAISSLVTL--PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPSAR  516 (534)
Q Consensus       462 ~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k  516 (534)
                      +++|.+++..  +.....+. +.+.++.|+++|+.. +..++..++.+|.+++....
T Consensus       339 ~~~L~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          339 AWAITNATSGGSAEQIKYLV-ELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHHCCHHHHHHHH-HHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHH-HCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhch
Confidence            9999999853  34555555 469999999999976 45799999999999998654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.98  E-value=8.8e-30  Score=278.56  Aligned_cols=359  Identities=20%  Similarity=0.212  Sum_probs=311.6

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENW  232 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~  232 (534)
                      ..++.|+..|+++++..+..|+.+|.+++..++..+..+++.|+++.|+++|+++++.++..++.+|.+++. +++++..
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~  177 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  177 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            468999999999999999999999999998877777788889999999999999999999999999999997 4568999


Q ss_pred             HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH------------------------
Q 009471          233 LVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC------------------------  287 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll------------------------  287 (534)
                      +++.|+++.|+++|++. ....++.++.+|++|+.+++++..+.+.|+++.|+.++                        
T Consensus       178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  257 (644)
T 2z6h_A          178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  257 (644)
T ss_dssp             HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred             HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence            99999999999999987 45678899999999999999998888888877776554                        


Q ss_pred             ---------------ccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcC-CChhHHHHHHHHHHHHccC
Q 009471          288 ---------------QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCG-ILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       288 ---------------~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~-~~~~v~~~a~~~L~~La~~  350 (534)
                                     .++++.++..++++|++|+..+ +++..+.+.|+++.|++++.+. +...+++.++.+|.+|+..
T Consensus       258 ~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~  337 (644)
T 2z6h_A          258 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  337 (644)
T ss_dssp             CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence                           4456777888888888888854 7788899999999999999763 3238999999999999975


Q ss_pred             Ch---HHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCC----------
Q 009471          351 NE---NLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGS----------  413 (534)
Q Consensus       351 ~~---~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~----------  413 (534)
                      ++   ..+..+.+.|+++.|+++|.+   +.++..++++|+||+. +.+...+.+.|+++.|+.++.+.+          
T Consensus       338 ~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a  417 (644)
T 2z6h_A          338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG  417 (644)
T ss_dssp             STTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----
T ss_pred             CchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc
Confidence            43   355668889999999999976   3689999999999998 667788889999999999997632          


Q ss_pred             ------------HHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471          414 ------------LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD  481 (534)
Q Consensus       414 ------------~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~  481 (534)
                                  .+++..++.+|++|+.+++++..+.+.|+++.|++++.+.+++++..|+.+|.+++.+++.+..+ .+
T Consensus       418 l~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i-~~  496 (644)
T 2z6h_A          418 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI-EA  496 (644)
T ss_dssp             ------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHH-HH
T ss_pred             cccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHH-HH
Confidence                        46777889999999999999999999999999999999999999999999999998775565544 55


Q ss_pred             CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .|+++.|+.++++. +..++.+|..+|.+++..
T Consensus       497 ~g~l~~L~~ll~~~-~~~vr~~A~~aL~~l~~~  528 (644)
T 2z6h_A          497 EGATAPLTELLHSR-NEGVATYAAAVLFRMSED  528 (644)
T ss_dssp             TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTT
T ss_pred             cCChhHHHHHHcCC-CHHHHHHHHHHHHHHhcc
Confidence            79999999999886 557999999999999986

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.98  E-value=1.7e-30  Score=277.32  Aligned_cols=358  Identities=18%  Similarity=0.192  Sum_probs=310.6

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc-CCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchh
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      ...++.|+..|+++++..+..|+..|.+++.+++ ++..++. .|+++.|+++|+++ +++++..|+.+|.+++.+++++
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~   94 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence            3468999999999999999999999999997544 5555554 48999999999765 7999999999999999988899


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-  308 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-  308 (534)
                      ..+++.|+++.|+++|+++++.++..|+++|.+++.+ ++.+..+.+.|+++.|+.++.++++.++..++.+|++++.. 
T Consensus        95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A           95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999987 45567788899999999999999999999999999999984 


Q ss_pred             chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                      ++++..+.+.|+++.+++++++++....++.+..+|.+++. ++..+..+.+.|+++.|++++.+  +.++..++++|.+
T Consensus       175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~  253 (529)
T 1jdh_A          175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            68999999999999999999988776678889999999997 56678889999999999999976  5678999999999


Q ss_pred             hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC--CChHHHHHHHH
Q 009471          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA--KPNSVREVAAQ  463 (534)
Q Consensus       387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~A~~  463 (534)
                      |+....... ...++++.|++++.+.++.++..|+++|.+++.+ ++.+..+.+.|+++.|++++.+  .++.++..|+.
T Consensus       254 l~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~  332 (529)
T 1jdh_A          254 LSDAATKQE-GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHTTCTTCS-CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcCChhhH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence            998321111 1246799999999999999999999999999976 7899999999999999999974  34799999999


Q ss_pred             HHHHhcCCCcc----hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          464 AISSLVTLPQN----CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       464 aL~~L~~~~~~----~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +|.+|+...+.    +..+ .+.++++.|+++|.++.+..++..++++|.|++.+
T Consensus       333 ~L~nl~~~~~~~~~~~~~i-~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          333 ALRHLTSRHQEAEMAQNAV-RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHH-HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHcCCchHHHHHHHH-HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence            99999865332    3344 45799999999999875457999999999999976

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.8e-30  Score=278.94  Aligned_cols=358  Identities=18%  Similarity=0.193  Sum_probs=311.0

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcC-CcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGR-SNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      ..++.|+..|+++++..+..|+..|.+++.+++ ++..++.. |+++.|+++|.++ +++++..|+.+|.+++.+++++.
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~   92 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   92 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence            358999999999999999999999999998665 55556544 8899999999876 79999999999999999888999


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-Cc
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VP  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~  309 (534)
                      .+.+.|+++.|+++|+++++.++..|+++|.+++..+ +.+..+.+.|+++.|+.+++++++.++..++.+|++++. ++
T Consensus        93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~  172 (644)
T 2z6h_A           93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  172 (644)
T ss_dssp             HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999998764 556678889999999999999999999999999999997 67


Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L  387 (534)
                      +++..+.+.|+++.|++++++.+...+++.++.+|.+++. ++.++..+++.|+++.|++++.+  +.++..++++|.||
T Consensus       173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  251 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8999999999999999999887765788999999999997 56778899999999999999976  56899999999999


Q ss_pred             hcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCC--ChHHHHHHHHH
Q 009471          388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK--PNSVREVAAQA  464 (534)
Q Consensus       388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~A~~a  464 (534)
                      +...... ....++++.|+.++.+.++.++..|+++|.+|+.. ++.+..+.+.|+++.|++++.+.  .+.++..|+.+
T Consensus       252 ~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          252 SDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            9821111 11236799999999999999999999999999975 78899999999999999999853  37999999999


Q ss_pred             HHHhcCCCcc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          465 ISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       465 L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      |.+|+...+.   ....+.+.++++.|+++|.++.+..+++.++++|.|++.+
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~  383 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  383 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence            9999865332   1232345789999999999875457999999999999965

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=4.7e-29  Score=277.51  Aligned_cols=359  Identities=20%  Similarity=0.231  Sum_probs=308.7

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENW  232 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~  232 (534)
                      ..++.|+..|+++++..+..|+.+|.+++...+..+..+.+.|+++.|+++|++++..++..++.+|.+++... +.+..
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~  313 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  313 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence            57899999999999999999999999999987778888888999999999999999999999999999999754 58889


Q ss_pred             HHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH------------------------
Q 009471          233 LVSEGVLPPLIRLVESGST-VGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC------------------------  287 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll------------------------  287 (534)
                      +++.|+++.|+++|++++. ..++.++.+|.+|+..++++..+++.|+++.|+.++                        
T Consensus       314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~  393 (780)
T 2z6g_A          314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  393 (780)
T ss_dssp             HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence            9999999999999998754 466788999999998888888887777766665544                        


Q ss_pred             ---------------ccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhc-CCChhHHHHHHHHHHHHccC
Q 009471          288 ---------------QTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDC-GILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       288 ---------------~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~-~~~~~v~~~a~~~L~~La~~  350 (534)
                                     .+.++.++..++++|++|+..+ +++..+.+.|+++.|++++.+ ++...+++.|+.+|++|+..
T Consensus       394 ~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~  473 (780)
T 2z6g_A          394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  473 (780)
T ss_dssp             CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence                           4456778888999999998865 788888899999999999976 33337999999999999975


Q ss_pred             ChH---HHHHHHhcCChHHHHHhhcC--C-chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCC----------
Q 009471          351 NEN---LRRSVVSEGGIRSLLAYLDG--P-LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGS----------  413 (534)
Q Consensus       351 ~~~---~~~~i~~~g~l~~L~~~L~~--~-~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~----------  413 (534)
                      ++.   .+..+...++++.|+++|.+  . .++..|+++|+||+. +.+...+.+.|+++.|+.+|.+++          
T Consensus       474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~a  553 (780)
T 2z6g_A          474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG  553 (780)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhc
Confidence            443   45678899999999999976  3 689999999999998 555677888999999999997643          


Q ss_pred             ------------HHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471          414 ------------LGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD  481 (534)
Q Consensus       414 ------------~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~  481 (534)
                                  .+++..++.+|++|+.+++++..+.+.|+++.|++++.++++.++..|+.+|++|+.+++.+..+ .+
T Consensus       554 l~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i-~~  632 (780)
T 2z6g_A          554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI-EA  632 (780)
T ss_dssp             ----CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHH-HH
T ss_pred             cccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence                        35677899999999988999999999999999999999999999999999999998776665555 45


Q ss_pred             CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .|+++.|+.++++. +..++.+|..+|.+++..
T Consensus       633 ~g~i~~L~~Ll~~~-~~~Vr~~A~~aL~~l~~~  664 (780)
T 2z6g_A          633 EGATAPLTELLHSR-NEGVATYAAAVLFRMSED  664 (780)
T ss_dssp             TTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence            79999999999886 557999999999999986

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=5e-30  Score=257.65  Aligned_cols=264  Identities=19%  Similarity=0.211  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcChh-hHHHHHhC
Q 009471          210 PRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVES-----------GSTVGKEKATISLQRLSMSAE-MARAIVGH  277 (534)
Q Consensus       210 ~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~  277 (534)
                      ...+..|+++|.+++.++++|+.+++.|++++|+.+|..           .++.++..|+++|.+|+.+++ ++..+...
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            455668999999999998899999999999999999953           246789999999999998755 66677665


Q ss_pred             CC-hHHHHHHHccCChHHHHHHHHHHHHccCC--chHHHHHHhhCcHHHHHHHh-hcCCChhHHHHHHHHHHHHccCChH
Q 009471          278 GG-VRPLIEICQTGDSVSQAAAACTLKNISAV--PEVRQMLAEEGIVSVMIKLL-DCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       278 g~-i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~e~g~i~~L~~ll-~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                      +| |+.|+.+|++++++++..++++|+||+..  ++++..+.+.|+++.|+++| .+++. ++++.++.+|+||+..++.
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccChh
Confidence            55 99999999999999999999999999985  57899999999999999986 44554 8999999999999987777


Q ss_pred             HHHHHH-hcCChHHHHHhhcC--C----chHHHHHHHHHHhhc-----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHH
Q 009471          354 LRRSVV-SEGGIRSLLAYLDG--P----LPQESAVGALRNLVG-----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAA  421 (534)
Q Consensus       354 ~~~~i~-~~g~l~~L~~~L~~--~----~~~~~a~~aL~~La~-----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~  421 (534)
                      ++..+. ..|+++.|+++|.+  +    .+++.|+++|+||+.     ++.+..+.+.|+++.|+.+|++++..+++.|+
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~  284 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC  284 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence            777777 79999999999975  2    379999999999993     45677888999999999999999999999999


Q ss_pred             HHHHHhc-CChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc
Q 009471          422 SALCRVC-TSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN  474 (534)
Q Consensus       422 ~aL~~la-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~  474 (534)
                      ++|+|++ .+++.+..+.+.|++|.|+++++++++.+++.|+++|.+|+...+.
T Consensus       285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            9999999 4699999999999999999999999999999999999999976544

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=3.9e-28  Score=270.13  Aligned_cols=359  Identities=18%  Similarity=0.188  Sum_probs=308.6

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc-CCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchh
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      ...++.|+..|.++++..|..|+.+|.+++..+ .++..+.. .|+++.|+++|+++ +++++..|+.+|.+|+...+++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            446899999999999999999999999998754 35555664 37899999999865 7999999999999999988888


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-C
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-V  308 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~  308 (534)
                      ..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+. +.+..+.+.|+++.|+.++.++++.++..++.+|++++. +
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999874 556677789999999999999999999999999999997 4


Q ss_pred             chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          309 PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       309 ~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                      ++++..+.+.|+++.|+.++++++....++.++.+|.+++. .+.++..+++.|+++.|+.++.+  +.++..++++|.+
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~  386 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  386 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            68999999999999999999988775678889999999997 56678889999999999999976  4578999999999


Q ss_pred             hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcC-CC-hHHHHHHHH
Q 009471          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEA-KP-NSVREVAAQ  463 (534)
Q Consensus       387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~-~~-~~v~~~A~~  463 (534)
                      |+..... .....++++.|+.++.+.++.++..|+++|.+|+.. ++.+..+.+.|+++.|++++.. .+ +.++..|+.
T Consensus       387 L~~~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~  465 (780)
T 2z6g_A          387 LSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  465 (780)
T ss_dssp             HHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Hhccchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence            9973211 111246799999999999999999999999999976 6889999999999999999975 33 489999999


Q ss_pred             HHHHhcCCCcch---HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          464 AISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       464 aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +|.+|+......   +..+.+.++++.|+.+|.++....+++.++++|.||+.+
T Consensus       466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  519 (780)
T 2z6g_A          466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  519 (780)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence            999998654331   233445789999999999875457999999999999965

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=7.5e-29  Score=249.06  Aligned_cols=260  Identities=20%  Similarity=0.224  Sum_probs=230.9

Q ss_pred             HHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcCCc-hhHHHHhc-
Q 009471          170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGS-CENWLVSE-  236 (534)
Q Consensus       170 ~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~-~~~~l~~~-  236 (534)
                      .+.+|+.+|.+++.+ ++++..+++.|++++|+.+|..           .++.+|..|+++|.+|+..++ ++..+... 
T Consensus        48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            345788999999875 7899999999999999999952           237899999999999998776 77777655 


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHH-HccCChHHHHHHHHHHHHccC-CchHH
Q 009471          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEI-CQTGDSVSQAAAACTLKNISA-VPEVR  312 (534)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~l-l~~~~~~~~~~a~~aL~nLa~-~~~~~  312 (534)
                      |+++.|+++|+++++++++.|+++|.+|+..  ++++..+.+.|+++.|+++ ++++++.++..++++|+||+. .++++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            5599999999999999999999999999974  6788899999999999997 466789999999999999999 66888


Q ss_pred             HHHH-hhCcHHHHHHHhhcCCCh---hHHHHHHHHHHHHcc---CChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHH
Q 009471          313 QMLA-EEGIVSVMIKLLDCGILL---GSKEYAAECLQNLTA---SNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGA  383 (534)
Q Consensus       313 ~~i~-e~g~i~~L~~ll~~~~~~---~v~~~a~~~L~~La~---~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~a  383 (534)
                      ..+. +.|+++.|++++.++++.   ++++.++++|.|++.   .++..++.+.+.|+++.|+++|.+  ..+++.|+++
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            8888 699999999999877652   489999999999997   688899999999999999999987  4589999999


Q ss_pred             HHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          384 LRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       384 L~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                      |+||+.  ++....+.+.|+++.|+.+++++++.+++.|+++|.+|+.+
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999995  56677889999999999999999999999999999999975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=3.7e-25  Score=212.18  Aligned_cols=234  Identities=25%  Similarity=0.352  Sum_probs=218.6

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHH
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARA  273 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~  273 (534)
                      |+++.|+++|++++++++..|+++|.+++...+ ++..+++.|+++.|+++|++++..++..++++|.+++.+ ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            679999999999999999999999999998876 899999999999999999999999999999999999988 778889


Q ss_pred             HHhCCChHHHHHHHccCChHHHHHHHHHHHHcc-CCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS-AVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~  352 (534)
                      +.+.|+++.|+.++.++++.++..++++|+|++ ..++.+..+.+.|+++.+++++.+++. .++..++.+|.+++..++
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999 567899999999999999999998886 899999999999999888


Q ss_pred             HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      ..+..+.+.|+++.|++++.+  +.++..++++|.+++.  +.....+.+.|+++.|+.+++++++.+++.|+++|.+++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            888899999999999999976  5689999999999997  455667889999999999999999999999999999998


Q ss_pred             CC
Q 009471          429 TS  430 (534)
Q Consensus       429 ~~  430 (534)
                      ..
T Consensus       241 ~~  242 (252)
T 4hxt_A          241 SG  242 (252)
T ss_dssp             HT
T ss_pred             cC
Confidence            64

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=2.6e-25  Score=213.71  Aligned_cols=236  Identities=19%  Similarity=0.285  Sum_probs=216.0

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN  231 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~  231 (534)
                      ...++.++..|++++++.+..|+..|.+++..++.++..+++.|+++.|+++|++++++++..|+++|.+++... +.+.
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            345889999999999999999999998888777778888999999999999999999999999999999999854 5899


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-  309 (534)
                      .+++.|+++.|+.+|+++++.+++.|+++|.+|+.+++.+ ..+.+.|+++.|+.++.++++.++..++++|+|++..+ 
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999999999999999999998887 78899999999999999999999999999999999854 


Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L  387 (534)
                      +.+..+.+.|+++.|++++.+++. .++..++.+|.+++..++..+..+.+.|+++.|++++.+  +.++..|+++|.||
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            777788899999999999998876 899999999999998888888888899999999999876  67889999999998


Q ss_pred             hc
Q 009471          388 VG  389 (534)
Q Consensus       388 a~  389 (534)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            74

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=9.3e-25  Score=209.36  Aligned_cols=234  Identities=25%  Similarity=0.361  Sum_probs=218.9

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l  233 (534)
                      .++.++..|++++++.+..|+..|.+++..+++++..+++.|+++.|+++|++++++++..|+++|.+++.+ ++.+..+
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            478999999999999999999999999998888889999999999999999999999999999999999998 4589999


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh-cChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EV  311 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls-~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~  311 (534)
                      .+.|+++.|+.+|+++++.++..|+++|.+|+ .+++++..+.+.|+++.|+.++.++++.++..++++|+|++..+ +.
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999 56778888999999999999999999999999999999999854 66


Q ss_pred             HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      +..+.+.|+++.|++++.+++. .++..++.+|.+++.+++..+..+.+.|+++.|++++++  +.+++.|+++|+||+.
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence            6888899999999999998776 899999999999999888899999999999999999976  5689999999999997

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=8.3e-25  Score=210.22  Aligned_cols=233  Identities=17%  Similarity=0.248  Sum_probs=213.7

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhHHH
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAE-SGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA  273 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~  273 (534)
                      ...+.+++.|++++++++..|+++|.++.. +++.+..+++.|+++.|+++|+++++.++..|+++|.+++. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            458999999999999999999999976544 45588899999999999999999999999999999999997 5788889


Q ss_pred             HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~  352 (534)
                      +.+.|+++.|+.++.++++.++..++++|+|++.+++.+ ..+.+.|+++.|++++.+++. .++..++++|.+++..++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCh
Confidence            999999999999999999999999999999999998887 888899999999999998876 899999999999999888


Q ss_pred             HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      ..+..+.+.|+++.|++++++  +.++..|+++|++++.  +.....+.+.|+++.|+.++.++++.+++.|+++|.+|+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            888889999999999999976  5689999999999996  455667889999999999999999999999999999998


Q ss_pred             C
Q 009471          429 T  429 (534)
Q Consensus       429 ~  429 (534)
                      .
T Consensus       251 ~  251 (252)
T 4db8_A          251 S  251 (252)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.3e-23  Score=220.84  Aligned_cols=353  Identities=13%  Similarity=0.145  Sum_probs=277.6

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc-CCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCc--
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG-RSNIAALVQLLTA-TSPRIREKTVTVICSLAESGS--  228 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~-~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~--  228 (534)
                      ....+.+...|..++.+.+..|++.|..+..+ ++.+..+++ .|.+..|+.+++. .+..+...++.+|.|++.+.+  
T Consensus       333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence            34566677777777777799999999999764 445556654 4669999999996 667899999999999988432  


Q ss_pred             -------------------------------------hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH
Q 009471          229 -------------------------------------CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA  271 (534)
Q Consensus       229 -------------------------------------~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~  271 (534)
                                                           ++..+.+.|++++|+.+++++++.+++.|+++|.+|+.+++++
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R  491 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI  491 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence                                                 3567778899999999999999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHccCChH---HHHHHHHHHHHccCCchHHHHHH--h-hCcHHHHHHHhhcCCChh----------
Q 009471          272 RAIVGHGGVRPLIEICQTGDSV---SQAAAACTLKNISAVPEVRQMLA--E-EGIVSVMIKLLDCGILLG----------  335 (534)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~~~~~---~~~~a~~aL~nLa~~~~~~~~i~--e-~g~i~~L~~ll~~~~~~~----------  335 (534)
                      ..+++.|+++.|+.++.+++..   .+..|+.+|.++....+....+.  . .|+++.|+++|..++...          
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999987654   89999999999986433333331  1 489999999998321101          


Q ss_pred             --H-HHHHHHHHHHHccCC----hHHHHHHHhc-CChHHHHHhhcC--CchHHHHHHHHHHhhc-CccH-HHHHhcC---
Q 009471          336 --S-KEYAAECLQNLTASN----ENLRRSVVSE-GGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQ-EVLISLG---  400 (534)
Q Consensus       336 --v-~~~a~~~L~~La~~~----~~~~~~i~~~-g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~-~~l~~~~---  400 (534)
                        . +..|+.+|.||+..+    +..|..++++ |+++.|.++|.+  +.+|..|++++.||+. +... ..+...+   
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              2 779999999999976    3567888885 999999999865  5689999999999998 4332 2333222   


Q ss_pred             ---cHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhc-CchHHHHHhhcC--CChHHHHHHHHHHHHhcCC-C
Q 009471          401 ---FFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEA-GCTPLLIKLLEA--KPNSVREVAAQAISSLVTL-P  472 (534)
Q Consensus       401 ---~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~-g~v~~Lv~ll~~--~~~~v~~~A~~aL~~L~~~-~  472 (534)
                         .++.|+.++++++..+|+.|+++|.+++ .++...+.+.+. ++++.++.++++  ++++++.+++.++++|+.. +
T Consensus       652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~  731 (778)
T 3opb_A          652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP  731 (778)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence               3789999999999999999999999996 567788888776 799999999998  8999999999999999952 1


Q ss_pred             -----cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHH
Q 009471          473 -----QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVA  506 (534)
Q Consensus       473 -----~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~  506 (534)
                           +....+..+.+....|.+.|..++..+....++-
T Consensus       732 ~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~  770 (778)
T 3opb_A          732 DNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIP  770 (778)
T ss_dssp             STTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHH
T ss_pred             cCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHH
Confidence                 2334555455667788888887643333333433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.1e-22  Score=215.46  Aligned_cols=360  Identities=15%  Similarity=0.143  Sum_probs=283.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l  233 (534)
                      +++.+...+.++..+....++-.+.+.++.+...|..+ ....++.|.+++++  ..+|..|+-+|+.+...+. ....+
T Consensus       256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si  332 (778)
T 3opb_A          256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL  332 (778)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH
Confidence            45556666666655556677777777787777776555 56889999999976  4889999999999987553 11111


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-CCChHHHHHHHcc-CChHHHHHHHHHHHHccCCch-
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPE-  310 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~-  310 (534)
                      .  ...+.+.+.|.+++.+.+..|++.|..++.+++.+..+.. .|.++.|+.+++. ++..+..-++.+|.|++...+ 
T Consensus       333 ~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          333 K--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             H--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred             H--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence            1  2467777888877766799999999999999999999887 5559999999995 778888999999999987321 


Q ss_pred             --------------------------------------HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh
Q 009471          311 --------------------------------------VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE  352 (534)
Q Consensus       311 --------------------------------------~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~  352 (534)
                                                            ++..+.+.|+++.|+.++.++++ .+++.++++|.+|+. ++
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~-~~re~A~~aL~nLS~-d~  488 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP-NCKQQVVRIIYNITR-SK  488 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCH-HHHHHHHHHHHHHHT-SG
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCH-HHHHHHHHHHHHHcC-CH
Confidence                                                  45667789999999999999887 899999999999996 68


Q ss_pred             HHHHHHHhcCChHHHHHhhcC--Cc---hHHHHHHHHHHhhcCccHHHHHh----cCcHHHHHHHHhc--CC--------
Q 009471          353 NLRRSVVSEGGIRSLLAYLDG--PL---PQESAVGALRNLVGSVSQEVLIS----LGFFPRLVHVLKA--GS--------  413 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~L~~--~~---~~~~a~~aL~~La~~~~~~~l~~----~~~i~~Lv~lL~~--~~--------  413 (534)
                      .+|..+++.|+++.|++++.+  +.   .+..|+.+|.+++...++..+..    .+.+++|+.+|..  +.        
T Consensus       489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~  568 (778)
T 3opb_A          489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND  568 (778)
T ss_dssp             GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred             HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence            899999999999999999976  22   68999999999997545554432    4889999999972  21        


Q ss_pred             ---H-HHHHHHHHHHHHhcCCh-----hHHHHHHhc-CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcch-HHHHhhC
Q 009471          414 ---L-GAQQAAASALCRVCTSA-----EMKKLVGEA-GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC-REVKRDD  482 (534)
Q Consensus       414 ---~-~v~~~A~~aL~~la~~~-----~~~~~i~~~-g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~  482 (534)
                         + --+.+|+.+|.||+..+     +.++.++.. |+++.|.+++.+.+..+|..|++++++|+.++... ..++...
T Consensus       569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~  648 (778)
T 3opb_A          569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLE  648 (778)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCS
T ss_pred             ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhc
Confidence               1 22779999999999764     567878885 99999999999999999999999999999887765 3554321


Q ss_pred             -----CCHHHHHhhcCCCCchhHHHHHHHHHHhhchhHHHHHHHH
Q 009471          483 -----KSVPNLVQLLDPSPQNTAKKYAVACLASLSPSARKLLERL  522 (534)
Q Consensus       483 -----~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~~k~~~~~l  522 (534)
                           +.++.|+.+++.+ +...|..|.++|.+++.+.....+.+
T Consensus       649 ~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~l  692 (778)
T 3opb_A          649 NPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKEL  692 (778)
T ss_dssp             SHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHH
Confidence                 2378999999886 55799999999999986544443333

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=189.71  Aligned_cols=198  Identities=15%  Similarity=0.124  Sum_probs=175.1

Q ss_pred             hhchHHHHHHHHhcCCH--HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-Cc
Q 009471          152 THGNTRELLARLQIGHL--EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES-GS  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~--~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~  228 (534)
                      ....++.++..|+++++  +.+..|+..|.+++..+++++..+++.|+||+|+++|+++++++|+.|+++|.+|+.. ++
T Consensus         6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            45578999999999988  8888999999999999999999999999999999999999999999999999999985 46


Q ss_pred             hhHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc----------------cCC
Q 009471          229 CENWLVSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ----------------TGD  291 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~----------------~~~  291 (534)
                      ++..+++.|++++|+++|.+ ++..+++.|+.+|++|+..++++..+.+ +++++|+.++.                ..+
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            99999999999999999984 7899999999999999999999998887 47999987652                126


Q ss_pred             hHHHHHHHHHHHHccC-CchHHHHHHh-hCcHHHHHHHhhcC-----CChhHHHHHHHHHHHHccC
Q 009471          292 SVSQAAAACTLKNISA-VPEVRQMLAE-EGIVSVMIKLLDCG-----ILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       292 ~~~~~~a~~aL~nLa~-~~~~~~~i~e-~g~i~~L~~ll~~~-----~~~~v~~~a~~~L~~La~~  350 (534)
                      +.++..+.++|+||+. ++++|+.|.+ .|+|+.|+.+++.+     .+...+++|+.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6899999999999998 4599999998 57889999999753     1226899999999999974

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=3.7e-22  Score=187.09  Aligned_cols=193  Identities=18%  Similarity=0.201  Sum_probs=170.9

Q ss_pred             CcHHHHHHHhcCCCH--HHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009471          196 SNIAALVQLLTATSP--RIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMA  271 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~--~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~  271 (534)
                      -.++.|+++|+++++  +++..|+++|.+++..+ +++..+++.|+||+|+++|+++++.+++.|+++|.+|+. +++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            358999999999987  89999999999999654 589999999999999999999999999999999999997 58899


Q ss_pred             HHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh---cCC------------Chh
Q 009471          272 RAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD---CGI------------LLG  335 (534)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~---~~~------------~~~  335 (534)
                      ..+.+.|+|+.|+++|+ ++++.+++.++.+||||+..++++..|++. +++.|++++.   ++.            +.+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999998 579999999999999999999999999875 6999988763   221            337


Q ss_pred             HHHHHHHHHHHHccCChHHHHHHHhc-CChHHHHHhhcC--------CchHHHHHHHHHHhhc
Q 009471          336 SKEYAAECLQNLTASNENLRRSVVSE-GGIRSLLAYLDG--------PLPQESAVGALRNLVG  389 (534)
Q Consensus       336 v~~~a~~~L~~La~~~~~~~~~i~~~-g~l~~L~~~L~~--------~~~~~~a~~aL~~La~  389 (534)
                      ++++|..+|+||+..+++.|+.+.+. |+++.|+.+++.        ...+++|+.+|+||+.
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            89999999999999888899999876 567999999853        3478999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=2.4e-21  Score=180.61  Aligned_cols=195  Identities=19%  Similarity=0.269  Sum_probs=173.5

Q ss_pred             cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009471          194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMA  271 (534)
Q Consensus       194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~  271 (534)
                      ..|+.+.|+.+|++++++++..|+++|.+++..+ +.+..+++.|+++.|+++|+++++.+++.|+++|.+++. +++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            4588999999999999999999999999999655 588899999999999999999999999999999999995 57778


Q ss_pred             HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471          272 RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       272 ~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~  350 (534)
                      ..+.+.|+++.|+.++.++++.++..++++|+|++.. ++.+..+.+.|+++.|++++.+++. .++..++++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence            8899999999999999999999999999999999974 4677788899999999999998876 8999999999999998


Q ss_pred             ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          351 NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       351 ~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      ++..+..+.+.|+++.|++++++  +.+++.|+++|.+|+.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            88888888888888888888865  4678888888888764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=3.6e-21  Score=179.41  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=180.3

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCEN  231 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~  231 (534)
                      ....+.++..|++++++.+..|+..|.+++..+++.+..+++.|+++.|+++|+++++++++.|+++|++++... +.+.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            345678888899999999999999999999888999899999999999999999999999999999999999655 5889


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-c
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-P  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~  309 (534)
                      .+++.|+++.|+.+|+++++.++..|+++|.+++.. ++....+.+.|+++.|+.++.++++.++..++++|+|++.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999965 55567888999999999999999999999999999999997 6


Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      +.+..+.+.|+++.|++++.+++. .+++.|+.+|.+++.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENE-KIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHhc
Confidence            888889999999999999998876 899999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=1e-19  Score=177.90  Aligned_cols=199  Identities=18%  Similarity=0.192  Sum_probs=175.7

Q ss_pred             hHHHHHHHHhcC------------CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHH-HhcCCCHHHHHHHHHHHH
Q 009471          155 NTRELLARLQIG------------HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVIC  221 (534)
Q Consensus       155 ~i~~Ll~~L~~~------------~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~  221 (534)
                      .++..+..|.+.            +.+.+..|+..|.+++. +.++...+...|++++|+. +|+++++.+|+.|+++|+
T Consensus        29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg  107 (296)
T 1xqr_A           29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG  107 (296)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            456667777653            34679999999999987 4457778888999999999 999999999999999999


Q ss_pred             HhhcCCc-hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 009471          222 SLAESGS-CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAA  298 (534)
Q Consensus       222 ~La~~~~-~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a  298 (534)
                      +++.+++ ++..+++.|++++|+.+|+++ +..+++.|+++|.+++.+ ++..+.+.+.||++.|+.+++++++.++..+
T Consensus       108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A  187 (296)
T 1xqr_A          108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS  187 (296)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            9998775 889999999999999999964 889999999999999876 5557788899999999999999999999999


Q ss_pred             HHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471          299 ACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR  355 (534)
Q Consensus       299 ~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~  355 (534)
                      +++|.+++. .++.+..+++.|+++.|+.+|.+++. .+++.++.+|.+|+.+.+...
T Consensus       188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~-~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh-hHHHHHHHHHHHHHhCChhHH
Confidence            999999987 46889999999999999999999887 899999999999998755443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.84  E-value=1.3e-19  Score=177.22  Aligned_cols=221  Identities=18%  Similarity=0.193  Sum_probs=183.4

Q ss_pred             hHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHH-HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHh
Q 009471          292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK-LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAY  370 (534)
Q Consensus       292 ~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~-ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~  370 (534)
                      .+-+..|+..|.+++.+.++...+...|+++.++. +|.++++ .+++.|+++|++++.+++..++.+++.|+++.|+++
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~-~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            35678899999999998899999999999999999 9998886 899999999999999999999999999999999999


Q ss_pred             hcC---CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchH
Q 009471          371 LDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTP  444 (534)
Q Consensus       371 L~~---~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~  444 (534)
                      |++   +.++..|+++|+|++.  +...+.+.+.|+++.|+.+|+++++.++..|+|+|.+++. +++.++.+.+.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            973   3589999999999997  3445678889999999999999999999999999999985 488999999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhcCCCcch-HHHHhhCCCHHH----HHhhcCCCC-chhHHHHHHHHHHhhch
Q 009471          445 LLIKLLEAKPNSVREVAAQAISSLVTLPQNC-REVKRDDKSVPN----LVQLLDPSP-QNTAKKYAVACLASLSP  513 (534)
Q Consensus       445 ~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~-~~~~~~~~~v~~----Lv~lL~~~~-~~~~k~~a~~~L~~L~~  513 (534)
                      .|+.++.+++..+++.|+.+|.+|+...+.. +.+......+..    -...++..+ ..++.+++..++.+.-.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999774332 222221111211    123334332 34677888888877653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=1.7e-14  Score=150.74  Aligned_cols=365  Identities=15%  Similarity=0.161  Sum_probs=272.4

Q ss_pred             hhchHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc
Q 009471          152 THGNTRELLARLQIGH-LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~-~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~  228 (534)
                      ....|+.|..+++++. .+.|+.|+..|..++++-+    ..+..++++.|+..|+..  |.++...++.+|.++...++
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            3456999999998765 7889999999999986433    334568999999999874  68999999999987754322


Q ss_pred             ------------------hhHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-h-hHHHHH-hCCChHHHHHH
Q 009471          229 ------------------CENWL-VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-E-MARAIV-GHGGVRPLIEI  286 (534)
Q Consensus       229 ------------------~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~-~~~~l~-~~g~i~~Lv~l  286 (534)
                                        ..+.+ .+.+.++.|+.+|++.+..++..+..+|..|+.+. + ....+. ..+|++.|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence                              11222 34578999999999999999999999999998663 3 456677 47999999999


Q ss_pred             HccCChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCC---ChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471          287 CQTGDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGI---LLGSKEYAAECLQNLTASNENLRRSVVSEG  362 (534)
Q Consensus       287 l~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~---~~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (534)
                      |.+....+|..++..|.+|+.++ ++++.+.-+|+++.|+.++..+.   ...+...|+.+|.||...|+.++..+.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            99999999999999999999976 66666666999999999996433   225788999999999999999999999999


Q ss_pred             ChHHHHHhhcC-Cc-------h---HHHHHHHHHHhhcC--------ccHHHHHhcCcHHHHHHHHhcC--CHHHHHHHH
Q 009471          363 GIRSLLAYLDG-PL-------P---QESAVGALRNLVGS--------VSQEVLISLGFFPRLVHVLKAG--SLGAQQAAA  421 (534)
Q Consensus       363 ~l~~L~~~L~~-~~-------~---~~~a~~aL~~La~~--------~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~A~  421 (534)
                      +++.|..+++. ++       .   ...++.+++-|+.+        .+...+.+.|++..|++++.+.  ...++..|+
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999864 11       1   12367777777763        2345778899999999999765  578999999


Q ss_pred             HHHHHhcCC-hhHHHHHHhcC---------chHHHHHhhcC-CChHHHHHHHHHHHHhcCC-CcchHHHHhh------C-
Q 009471          422 SALCRVCTS-AEMKKLVGEAG---------CTPLLIKLLEA-KPNSVREVAAQAISSLVTL-PQNCREVKRD------D-  482 (534)
Q Consensus       422 ~aL~~la~~-~~~~~~i~~~g---------~v~~Lv~ll~~-~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~------~-  482 (534)
                      .+++.+.++ +..+..+.+..         .+..|+.++.+ ...++|..|+.++...... ...+..+...      + 
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~  414 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDA  414 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccccc
Confidence            999999865 77888886543         33334444554 4588899999999888744 4455555541      0 


Q ss_pred             --CCHH---HHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHH
Q 009471          483 --KSVP---NLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLER  521 (534)
Q Consensus       483 --~~v~---~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~  521 (534)
                        ..+.   .|..-+-+. ++.--.+|..+|.++-..   +|+...+
T Consensus       415 ~~~~~s~g~ll~~~l~s~-d~~~~wfAavil~hll~~n~~~K~~~l~  460 (651)
T 3grl_A          415 TGNTVSAGQLLCGGLFST-DSLSNWCAAVALAHALQENATQKEQLLR  460 (651)
T ss_dssp             TTSSSCHHHHHHHHHTSS-CHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CCCCCCcchhhhhhhccC-chHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence              1111   123333332 223446788888888877   4555444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=9e-13  Score=137.86  Aligned_cols=326  Identities=15%  Similarity=0.148  Sum_probs=244.0

Q ss_pred             chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChH-----------------hHHHH-hcCCcHHHHHHHhcCCCHHHH
Q 009471          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEK-----------------NVLAV-MGRSNIAALVQLLTATSPRIR  213 (534)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~-----------------~~~~i-~~~g~v~~Lv~lL~~~~~~v~  213 (534)
                      ..++.++..|+.+  |.+....++++|.++...+++                 +...+ .+.++++.|+.+|++.+..+|
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR  139 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR  139 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence            4588899999764  778888899999888765432                 11233 356889999999999999999


Q ss_pred             HHHHHHHHHhhcCCc--hhHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh-CCChHHHHHHHcc
Q 009471          214 EKTVTVICSLAESGS--CENWLVS-EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQT  289 (534)
Q Consensus       214 ~~A~~~L~~La~~~~--~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~-~g~i~~Lv~ll~~  289 (534)
                      ..++..|..|+...+  .++.+.. .++++.|+.+|++....+|..+...|.+|+.+....+.++. .|+++.|+.+++.
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence            999999999998765  5777774 49999999999999999999999999999998777666555 7999999999987


Q ss_pred             CCh----HHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcCCCh-----hHHHH---HHHHHHHHccC------
Q 009471          290 GDS----VSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCGILL-----GSKEY---AAECLQNLTAS------  350 (534)
Q Consensus       290 ~~~----~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~~~~-----~v~~~---a~~~L~~La~~------  350 (534)
                      +..    .+...|+.+|.||...+ .++..|.|.|+++.|..++..+...     ....+   ++.++.-+...      
T Consensus       220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~  299 (651)
T 3grl_A          220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA  299 (651)
T ss_dssp             HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred             cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            544    67789999999999855 7999999999999999999754421     12233   67777777764      


Q ss_pred             ChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhc--CccHHHHHhcC---------cHHHHHHHHhcC-CH
Q 009471          351 NENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVG--SVSQEVLISLG---------FFPRLVHVLKAG-SL  414 (534)
Q Consensus       351 ~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~--~~~~~~l~~~~---------~i~~Lv~lL~~~-~~  414 (534)
                      ...++..+.+.|+++.|++++-.    ..++..|+.+++.+.+  +.+.+.+....         ++..|+.++.+. ..
T Consensus       300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~  379 (651)
T 3grl_A          300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF  379 (651)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence            23577888899999999998754    3478899999999988  34445554322         233344445444 47


Q ss_pred             HHHHHHHHHHHHhcC-ChhHHHHHHhc----------Cch---HHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHH
Q 009471          415 GAQQAAASALCRVCT-SAEMKKLVGEA----------GCT---PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVK  479 (534)
Q Consensus       415 ~v~~~A~~aL~~la~-~~~~~~~i~~~----------g~v---~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~  479 (534)
                      .+|..|+.++..+.. +++.+..+...          ..+   ..|..-+-+.++..--.|+.+|.++..+.+..|+..
T Consensus       380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~  458 (651)
T 3grl_A          380 VLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQL  458 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            899999999999885 46666666543          001   123344445566444558888999988777666543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.58  E-value=3.7e-14  Score=159.84  Aligned_cols=354  Identities=15%  Similarity=0.121  Sum_probs=236.4

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (534)
                      ...++.++..+..++++.|..|+..|..++...++.....++ +.++.++.++++.++.++..|+.++..+++....+..
T Consensus       214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~  292 (852)
T 4fdd_A          214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV  292 (852)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence            456778888888999999999999999999877755333333 5788889999999999999999999999987654443


Q ss_pred             HHh--cCCHHHHHHHH-----------cc-----------CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc
Q 009471          233 LVS--EGVLPPLIRLV-----------ES-----------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ  288 (534)
Q Consensus       233 l~~--~g~i~~Lv~lL-----------~~-----------~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~  288 (534)
                      +..  ...++.++..+           .+           .+..++..|+.+|..++.....  .+. ...++.+...+.
T Consensus       293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~  369 (852)
T 4fdd_A          293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLF  369 (852)
T ss_dssp             HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhc
Confidence            211  13456666665           22           1234688899999988764221  111 123577888888


Q ss_pred             cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471          289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (534)
Q Consensus       289 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (534)
                      ++++.+|..++.+|.+++.+......-.-.++++.++..+.+.+. .++..++.++++++...........-...++.++
T Consensus       370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~  448 (852)
T 4fdd_A          370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA-LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELL  448 (852)
T ss_dssp             CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            999999999999999999865321111125678899999988876 8999999999999862211000111123456666


Q ss_pred             HhhcC--CchHHHHHHHHHHhhc--Ccc----HHHH-------Hh-----------------------------------
Q 009471          369 AYLDG--PLPQESAVGALRNLVG--SVS----QEVL-------IS-----------------------------------  398 (534)
Q Consensus       369 ~~L~~--~~~~~~a~~aL~~La~--~~~----~~~l-------~~-----------------------------------  398 (534)
                      +.+.+  +.++..|+++|.+++.  ...    ...+       ..                                   
T Consensus       449 ~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~  528 (852)
T 4fdd_A          449 KRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM  528 (852)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH
Confidence            66654  5677888888888764  100    0000       00                                   


Q ss_pred             --------------------------------cCcH-------HHHHHHHhc-----------------CCHHHHHHHHH
Q 009471          399 --------------------------------LGFF-------PRLVHVLKA-----------------GSLGAQQAAAS  422 (534)
Q Consensus       399 --------------------------------~~~i-------~~Lv~lL~~-----------------~~~~v~~~A~~  422 (534)
                                                      .++.       +.++..++.                 .+.+++..++.
T Consensus       529 p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~  608 (852)
T 4fdd_A          529 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD  608 (852)
T ss_dssp             HHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHH
Confidence                                            0111       111111110                 13345566666


Q ss_pred             HHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchh
Q 009471          423 ALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNT  499 (534)
Q Consensus       423 aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~  499 (534)
                      ++..++..  .+...++.+.++++.+.+.+.++++.+|..+..++..++.. ......++.  ..++.++..|+.+ +..
T Consensus       609 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~~-~~~  685 (852)
T 4fdd_A          609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPE-FIS  685 (852)
T ss_dssp             HHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCTT-SHH
T ss_pred             HHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCcc-chH
Confidence            66666643  44555555678899999999888899999999999999843 444444444  3677888888665 446


Q ss_pred             HHHHHHHHHHhhchh
Q 009471          500 AKKYAVACLASLSPS  514 (534)
Q Consensus       500 ~k~~a~~~L~~L~~~  514 (534)
                      ++..|++++..++..
T Consensus       686 v~~~a~~alg~i~~~  700 (852)
T 4fdd_A          686 VCNNATWAIGEISIQ  700 (852)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            889999999988765

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.57  E-value=1.7e-13  Score=133.39  Aligned_cols=256  Identities=13%  Similarity=0.048  Sum_probs=198.6

Q ss_pred             hcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHH
Q 009471          193 MGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMAR  272 (534)
Q Consensus       193 ~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~  272 (534)
                      .+.+.++.|+..|+++++.+|..|+.+|+.+..          .+.++.|+.+++++++.++..|+++|..+...++...
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence            355789999999999999999999999999862          2358999999999999999999999999875443322


Q ss_pred             HHHhCCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC
Q 009471          273 AIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN  351 (534)
Q Consensus       273 ~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~  351 (534)
                      .+     ++.|. .++.++++.++..++.+|.++......    ....+++.++.++.+++. .++..++.+|.++..  
T Consensus        90 ~l-----~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~--  157 (280)
T 1oyz_A           90 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKST-NVRRATAFAISVIND--  157 (280)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC----
T ss_pred             HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC--
Confidence            21     24444 245788999999999999998642110    123468889999988886 899999999998764  


Q ss_pred             hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471          352 ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (534)
Q Consensus       352 ~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~  429 (534)
                               ...++.|+.++++  +.++..++.+|+.+...       ....++.|+.++++.++.++..|+++|.++..
T Consensus       158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~  221 (280)
T 1oyz_A          158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYD-------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD  221 (280)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence                     2478999999977  46899999999998532       12357899999999999999999999999862


Q ss_pred             ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471          430 SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (534)
Q Consensus       430 ~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~  509 (534)
                                ...++.|+.++.+++  ++..|..+|..+..           ...++.|..++...+++.....++..|.
T Consensus       222 ----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          222 ----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             ----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             ----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence                      457889999998644  88999999998842           2467889999987655566666666553

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.55  E-value=1.5e-12  Score=126.49  Aligned_cols=251  Identities=14%  Similarity=0.072  Sum_probs=196.2

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ..++.|+..|.++++..|..|+..|..+.  +         .+.++.|+.+++++++.+|..|+.+|+.+...+..... 
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-   90 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-   90 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence            35889999999999999999999999875  2         24688999999999999999999999999754432111 


Q ss_pred             HhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchH
Q 009471          234 VSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (534)
Q Consensus       234 ~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (534)
                          .++.|. .+++++++.++..++++|.++... +.....     .++.|+..+.++++.++..++.+|.++..    
T Consensus        91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----  157 (280)
T 1oyz_A           91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISVIND----  157 (280)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHH-----HHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence                234444 245778999999999999999742 222222     35889999999999999999999998754    


Q ss_pred             HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                            .++++.|++++.+++. .++..++.+|..+...++.         .++.|+..+++  +.++..|+.+|+++..
T Consensus       158 ------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~~~~  221 (280)
T 1oyz_A          158 ------KATIPLLINLLKDPNG-DVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRKD  221 (280)
T ss_dssp             -------CCHHHHHHHHTCSSH-HHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHHHcCCCH-HHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence                  3589999999998886 8999999999998643332         36778888876  5689999999999863


Q ss_pred             CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-CCChHHHHHHHHHHH
Q 009471          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-AKPNSVREVAAQAIS  466 (534)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~A~~aL~  466 (534)
                               ...++.|+.++++++  ++..|+.+|.++..          ...++.|.+++. ..++++...+..+|.
T Consensus       222 ---------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          222 ---------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             ---------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             ---------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence                     357899999997755  88999999999864          256899999986 456777777777664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.54  E-value=3.8e-14  Score=159.74  Aligned_cols=349  Identities=14%  Similarity=0.115  Sum_probs=238.9

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHH-Hh---cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLA-VM---GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSC  229 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~-i~---~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~  229 (534)
                      ..++.++..+.++++..+..++..|..++.+.+..... ..   -...++.++++++++++.+|..|+.+|..+....+.
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence            46888999999999999999999999998754432211 00   013577788888888999999999999988765432


Q ss_pred             hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          230 ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       230 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                      ...-.-...++.++..+.++++.++..++++|..++...... .... .+.++.++..+++.++.++..|+..+..++..
T Consensus       208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~  286 (852)
T 4fdd_A          208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ  286 (852)
T ss_dssp             HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence            110011246788888999999999999999999998643221 1111 23567888888999999999999999999876


Q ss_pred             chHHHHHHh--hCcHHHHHHHhh----------cC-----------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChH
Q 009471          309 PEVRQMLAE--EGIVSVMIKLLD----------CG-----------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR  365 (534)
Q Consensus       309 ~~~~~~i~e--~g~i~~L~~ll~----------~~-----------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~  365 (534)
                      +..+..+..  ...++.+++.+.          .+           ....++..+..+|..++...+.   .++ ...++
T Consensus       287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~  362 (852)
T 4fdd_A          287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILP  362 (852)
T ss_dssp             TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHH
Confidence            544332211  345666766661          11           1114688899999998863221   111 12355


Q ss_pred             HHHHhhcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hh--HHHHHH
Q 009471          366 SLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE--MKKLVG  438 (534)
Q Consensus       366 ~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~--~~~~i~  438 (534)
                      .+.+.+.+  +..|+.|+.+|++++.... ..+  .-..+++.++..+++.++.|+..|++++.+++.. ..  ....+ 
T Consensus       363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~-  440 (852)
T 4fdd_A          363 LLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL-  440 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH-
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH-
Confidence            66666665  5689999999999997321 121  2245788899999999999999999999999853 11  11122 


Q ss_pred             hcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC-cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          439 EAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       439 ~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                       .+.++.|++.+.+.++.+|..|+.+|.+++... .....+..  ..++.|+.+++... ......+..++.+++.
T Consensus       441 -~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~--~ll~~L~~~l~~~~-~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          441 -KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSKYQ-HKNLLILYDAIGTLAD  512 (852)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH--HHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH
Confidence             346888889898889999999999999998432 22233332  46677777776542 2344455666666653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.53  E-value=4.9e-13  Score=143.71  Aligned_cols=341  Identities=15%  Similarity=0.113  Sum_probs=236.4

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ..++.+...++..++.+|..|+..|..++...+..   ......++.+..+++++++.+|..|+.+|..++..-+..  .
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~  238 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence            44555666678889999999999999998654322   112367889999999999999999999999998754321  1


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc--hH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EV  311 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~--~~  311 (534)
                      ....+++.+..++++.+..+|..++.+|..++......  ......++.++.+++++++.+|..++.+|..++..-  +.
T Consensus       239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            23457888999999999999999999999997632111  112345789999999999999999999999887632  22


Q ss_pred             HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      +....-..+++.+..++.+.+. .++..++.+|..++.....   .......++.+..++++  +.++..++.++..++.
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~-~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~  392 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQ-HVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCH-HHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence            2222335678888888888776 8999999999988752111   11223457778888866  4688888888888876


Q ss_pred             CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (534)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~  467 (534)
                      ...... ....+++.+..++.+.+..++..++.++..++..  .+.    .....++.+.+++.+.+..+|..|..++..
T Consensus       393 ~~~~~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          393 VIGIRQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             HSCHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             hcCHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            222222 2234678888888888888888888888888742  111    111246777777887788888888888888


Q ss_pred             hcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          468 LVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       468 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++...+.. .+.  ...++.|+.++.+. +..+|..++.++..++..
T Consensus       468 l~~~~~~~-~~~--~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~  510 (588)
T 1b3u_A          468 LVEKFGKE-WAH--ATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEV  510 (588)
T ss_dssp             HHHHHCHH-HHH--HHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCch-hHH--HHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHh
Confidence            76432221 111  24556666655443 335666677766666543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.53  E-value=2.3e-13  Score=146.21  Aligned_cols=344  Identities=10%  Similarity=0.068  Sum_probs=248.1

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (534)
                      ...++.++..++.+++..|..|+.+|..++...+..   ......++.+..+++++++.+|..++.+|+.++...+.  .
T Consensus       202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~  276 (588)
T 1b3u_A          202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E  276 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c
Confidence            345677777788888999999999999987653321   11224688888899998999999999999999864321  1


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch
Q 009471          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE  310 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~  310 (534)
                      .....+++.++.++++.++.++..|+.+|..++..-  +..........++.+..++.+.++.+|..++.+|..++..-.
T Consensus       277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  356 (588)
T 1b3u_A          277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG  356 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred             cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            223456899999999999999999999999987642  211111223456888899999999999999999998875211


Q ss_pred             HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV  388 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La  388 (534)
                        .......+++.+..++.++++ +++..++.++..+.......   ......++.+.+++++  ..++..++.++..++
T Consensus       357 --~~~~~~~l~p~l~~~l~d~~~-~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~  430 (588)
T 1b3u_A          357 --KDNTIEHLLPLFLAQLKDECP-EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             --HHHHHHHTHHHHHHHHTCSCH-HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             --HhHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence              111234578888999987775 89999999998887532211   1123456777777766  457889999999988


Q ss_pred             cCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471          389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (534)
Q Consensus       389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L  468 (534)
                      ...... .....+++.++.++.+.+..++..|+.++..++..-...  ......+|.|.+++.+++..+|..++.++..+
T Consensus       431 ~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l  507 (588)
T 1b3u_A          431 GQLGVE-FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVL  507 (588)
T ss_dssp             HHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred             HHcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            611111 112346788888898999999999999999998541111  11245688888888888899999999999988


Q ss_pred             cCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          469 VTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       469 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +..-+. ..+..  ..++.|+++++++ ...+|..++.+|..+...
T Consensus       508 ~~~~~~-~~~~~--~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          508 SEVCGQ-DITTK--HMLPTVLRMAGDP-VANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHHH-HHHHH--HTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGG
T ss_pred             HHhcCH-HHHHH--HHHHHHHhhCCCC-CchHHHHHHHHHHHHHHH
Confidence            743221 22332  5788888888765 447999999999998864

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.45  E-value=6.2e-12  Score=135.52  Aligned_cols=339  Identities=14%  Similarity=0.140  Sum_probs=239.4

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-H
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-N  231 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-~  231 (534)
                      ...++.+...+.+.++.+|..|+.++..+...+++..   .+.+.++.+.++|.++++.++..|+.+|..++.+.+.. .
T Consensus       120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence            4456778888899999999999999999988666432   22467899999999999999999999999999876421 0


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC---
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA---  307 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~---  307 (534)
                      .-...+.+..|++.+.+.++..+.....+|..++..++ ....     .++.+..++++.++.++..|++++.++..   
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence            11112346778888888899899888888888875433 2222     34777788889999999999999999874   


Q ss_pred             -CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHH
Q 009471          308 -VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALR  385 (534)
Q Consensus       308 -~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~  385 (534)
                       +++....+. ..+.+.++.++. ++. .++..++.+|..+....+..    +.. .+..++...++ ..++..++..+.
T Consensus       272 ~~~~~~~~~~-~~~~~~L~~L~~-~d~-~vr~~aL~~l~~i~~~~p~~----~~~-~~~~~~~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          272 KDSDYYNMLL-KKLAPPLVTLLS-GEP-EVQYVALRNINLIVQKRPEI----LKQ-EIKVFFVKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             BTTBSHHHHH-HHTHHHHHHHTT-SCH-HHHHHHHHHHHHHHHHCCST----TTT-CTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHHHhc-CCc-cHHHHHHHHHHHHHHhChHH----HHH-HHHhheeccCChHHHHHHHHHHHH
Confidence             233333332 345677777664 444 89999999999998643321    111 12222222233 457888999999


Q ss_pred             HhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHH
Q 009471          386 NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQA  464 (534)
Q Consensus       386 ~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~a  464 (534)
                      +++...+...     +++.|..++.+.+.+++..++++|++++.. +....     .+++.|++++......++..+..+
T Consensus       344 ~l~~~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~  413 (591)
T 2vgl_B          344 RLASQANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVV  413 (591)
T ss_dssp             HTCCSSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHCChhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHH
Confidence            9887554432     466777888888899999999999999854 33322     347888888888888888888888


Q ss_pred             HHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHH
Q 009471          465 ISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERL  522 (534)
Q Consensus       465 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l  522 (534)
                      +..+....++.     ....+..|.+.++....+.++..++++|...+..   +.++++.+
T Consensus       414 l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l  469 (591)
T 2vgl_B          414 IRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF  469 (591)
T ss_dssp             HHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             HHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH
Confidence            88876433321     1356788888887655556788888888887664   34444444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.31  E-value=6e-11  Score=127.82  Aligned_cols=253  Identities=17%  Similarity=0.196  Sum_probs=174.2

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      +....++..+++.+.+.|.-+.-.+..++..+++...     -.++.+.+-|+++++.+|..|+.+|+++.. ++.... 
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~~-  121 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITEY-  121 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHHH-
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHHH-
Confidence            3466778888899999998888888888876664421     347788888999999999999999999863 222223 


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCch-H
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPE-V  311 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~-~  311 (534)
                          +++.+.+++.+.++.+|..|+.++.++... ++...   ..+.++.|..++.++++.++..|+.+|..++.... .
T Consensus       122 ----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~  194 (591)
T 2vgl_B          122 ----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS  194 (591)
T ss_dssp             ----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred             ----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence                367899999999999999999999999764 33222   13456899999999999999999999999987432 1


Q ss_pred             HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      ...-...+.+..++..+.+.++ -.+...+.++..++..++....     ..++.+...+++  +.++..|++++..+..
T Consensus       195 ~~~~l~~~~~~~Ll~~l~~~~~-~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          195 NLLDLNPQNINKLLTALNECTE-WGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred             cchhccHHHHHHHHHcCCCCCc-hHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence            0000012335566666655554 5677777777777754443222     235556666654  5677888888888763


Q ss_pred             -----CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          390 -----SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       390 -----~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                           ++....+ -..+.+.|+.++ ++++.++..|+.+|..+.
T Consensus       269 ~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~  310 (591)
T 2vgl_B          269 LLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIV  310 (591)
T ss_dssp             SCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHH
Confidence                 1122221 233456666554 467778888877777776

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.31  E-value=7e-11  Score=109.56  Aligned_cols=186  Identities=20%  Similarity=0.211  Sum_probs=156.1

Q ss_pred             cCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009471          194 GRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARA  273 (534)
Q Consensus       194 ~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~  273 (534)
                      +.+.++.|+++|+++++.+|..|+..|+.+..          ...++.|+++|+++++.++..|+++|..+..       
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            34679999999999999999999999998764          2468999999999999999999999999753       


Q ss_pred             HHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                         .+.++.|+.++.++++.++..++.+|.++..          .+.++.|++++.+++. .++..++.+|.++..    
T Consensus        80 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCC----
Confidence               3467889999999999999999999998753          4578999999988876 899999999999863    


Q ss_pred             HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                             ...++.|..++++  +.++..++.+|+.+..         ...++.|..+++++++.|+..|..+|.++..+
T Consensus       142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                   2357888899876  4689999999999864         23678899999999999999999999999865

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.29  E-value=1.1e-10  Score=107.28  Aligned_cols=183  Identities=21%  Similarity=0.217  Sum_probs=155.9

Q ss_pred             CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009471          195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI  274 (534)
Q Consensus       195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l  274 (534)
                      .+..+.++++|+++++.+|..|+.+|+.+..          .+.++.|++.|+++++.++..|+.+|..+..        
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            3668999999999999999999999998764          2458999999999999999999999998753        


Q ss_pred             HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (534)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~  354 (534)
                        ...++.|+.++.++++.++..++.+|.++..          ...++.++.++.+++. .++..++.+|..+..     
T Consensus        75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDW-FVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC-----
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC-----
Confidence              2457889999999999999999999988753          4578889999988776 899999999999863     


Q ss_pred             HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                            ...++.|..++++  +.++..|+.+|+.+..         ...++.|..++++.++.++..|..+|.++.
T Consensus       137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  2457888999976  4689999999999853         236788999999999999999999999875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.29  E-value=1.2e-09  Score=118.24  Aligned_cols=323  Identities=11%  Similarity=0.062  Sum_probs=230.7

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHH
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENW  232 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~  232 (534)
                      .+.....+..+++.+.+.|+-+.-.+..++..+++...     -.+..|.+-|+++++.+|..|+++|+++... +    
T Consensus        69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-~----  138 (618)
T 1w63_A           69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-E----  138 (618)
T ss_dssp             GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-H----
T ss_pred             cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-H----
Confidence            34567778888899999998888889999887765322     2478888899999999999999999999842 1    


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h
Q 009471          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E  310 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~  310 (534)
                      + ...+++.+.++|++.++.++..|+.++.++... ++..     .+.++.+..++.+.++.++..|+.+|..++... +
T Consensus       139 ~-~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          139 M-CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             H-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred             H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence            1 134588999999999999999999999999753 3322     255678888899999999999999999998753 3


Q ss_pred             HHHHHHhhCcHHHHHHHhhc--------------CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---
Q 009471          311 VRQMLAEEGIVSVMIKLLDC--------------GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---  373 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~~--------------~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---  373 (534)
                      ....+  ...++.++++|.+              -.++-.+...+.+|..++..++....     ...+.|.+++..   
T Consensus       213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~  285 (618)
T 1w63_A          213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTET  285 (618)
T ss_dssp             HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCC
T ss_pred             HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccc
Confidence            22222  3668888877753              11235788899999999987665432     234444444421   


Q ss_pred             -----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHH
Q 009471          374 -----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIK  448 (534)
Q Consensus       374 -----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~  448 (534)
                           ..+...|+.++..+...  . .+.. ..++.|..++.+.++.++..|+.+|..++..  ....+  ....+.++.
T Consensus       286 ~~~~~~aV~~ea~~~i~~l~~~--~-~l~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~--~~~~~~i~~  357 (618)
T 1w63_A          286 SKNVGNAILYETVLTIMDIKSE--S-GLRV-LAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAV--QRHRSTIVD  357 (618)
T ss_dssp             SSTHHHHHHHHHHHHHHHSCCC--H-HHHH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHH--GGGHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCC--H-HHHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHH--HHHHHHHHH
Confidence                 24566777777776542  1 1211 3567888888888889999999999888743  11222  235677888


Q ss_pred             hhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          449 LLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       449 ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .+++++..+|..|.++|..++ ...|...++      ..|...+... +.+.|..++.++..++..
T Consensus       358 ~l~d~d~~Ir~~alelL~~l~-~~~nv~~iv------~eL~~~l~~~-d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          358 CLKDLDVSIKRRAMELSFALV-NGNNIRGMM------KELLYFLDSC-EPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             GGGSSCHHHHHHHHHHHHHHC-CSSSTHHHH------HHHHHHHHHC-CHHHHHHHHHHHHHHHHS
T ss_pred             HccCCChhHHHHHHHHHHHHc-ccccHHHHH------HHHHHHHHhC-CHHHHHHHHHHHHHHHHH
Confidence            888888899999999998885 345544443      4455455443 346888888888888764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.28  E-value=9.4e-11  Score=108.67  Aligned_cols=187  Identities=22%  Similarity=0.189  Sum_probs=155.3

Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQML  315 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (534)
                      .+.++.|+..|+++++.++..|+..|..+..          ..+++.|+.++.++++.++..++.+|.++..        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            3568999999999999999999999998754          3567899999999999999999999988753        


Q ss_pred             HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccH
Q 009471          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQ  393 (534)
Q Consensus       316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~  393 (534)
                        .+.++.+++++.++++ .++..++.+|..+..           ...++.|++++++  +.++..|+.+|+++..    
T Consensus        80 --~~~~~~L~~~l~~~~~-~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 --ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             --GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             --HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence              4678999999988886 899999999999864           2357888998876  4589999999999854    


Q ss_pred             HHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc
Q 009471          394 EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ  473 (534)
Q Consensus       394 ~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~  473 (534)
                           ...++.|..++++.++.++..|+.+|.++..          ...++.|.++++++++.+|..|..+|.++.....
T Consensus       142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                 2468899999999999999999999999963          2357888899999999999999999999865443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.28  E-value=2.2e-10  Score=128.82  Aligned_cols=341  Identities=15%  Similarity=0.143  Sum_probs=230.4

Q ss_pred             hHHHHHHHHhc-------CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 009471          155 NTRELLARLQI-------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG  227 (534)
Q Consensus       155 ~i~~Ll~~L~~-------~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~  227 (534)
                      .++.++..+..       ++...+..+...|..++...++.   ++. ..++.+.+.++++++.+|+.|+.+++.++...
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~  400 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGP  400 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC
Confidence            45555555553       22456778888888877533211   111 34667777788888999999999999999654


Q ss_pred             c-h-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-------hhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 009471          228 S-C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-------EMARAIVGHGGVRPLIEICQTGDSVSQAAA  298 (534)
Q Consensus       228 ~-~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a  298 (534)
                      . . -.... ..+++.+++.+.+.++.++..+++++..++..-       +....     .++.++..+.+. +.++..+
T Consensus       401 ~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-----~l~~l~~~l~~~-~~v~~~a  473 (861)
T 2bpt_A          401 DKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG-----VVQACLIGLQDH-PKVATNC  473 (861)
T ss_dssp             CHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH-----HHHHHHHHHTSC-HHHHHHH
T ss_pred             CHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH-----HHHHHHHHhccC-hHHHHHH
Confidence            2 1 11111 246888999999999999999999999987531       12222     357888888775 8999999


Q ss_pred             HHHHHHccCC------chHHHHHHhhCcHHHHHHHhhcCCC-hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471          299 ACTLKNISAV------PEVRQMLAEEGIVSVMIKLLDCGIL-LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL  371 (534)
Q Consensus       299 ~~aL~nLa~~------~~~~~~i~e~g~i~~L~~ll~~~~~-~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L  371 (534)
                      +++|.+++..      +.....+  ..+++.+++++.+.+. ..++..++.++..++...+......+. ..++.+++.+
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l  550 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKL  550 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHH
Confidence            9999988753      1121111  3457788888875432 378999999999998743322211221 2445555554


Q ss_pred             cC-----------------CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCH-HHHHHHHHHHHHhcCC-
Q 009471          372 DG-----------------PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSL-GAQQAAASALCRVCTS-  430 (534)
Q Consensus       372 ~~-----------------~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~-~v~~~A~~aL~~la~~-  430 (534)
                      .+                 +.++..++.+|.+++.  ...... .-..+++.++..+++.+. .+++.+..++..++.. 
T Consensus       551 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence            31                 2356788999999887  211111 113467778888888776 8999999999999854 


Q ss_pred             -hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC-cchHHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHH
Q 009471          431 -AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP-QNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVAC  507 (534)
Q Consensus       431 -~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~  507 (534)
                       .+...++  ...+|.|.+.+.++++.++..+..++..++... .....+..  ..++.+++.+++. .+..+|..+..+
T Consensus       630 ~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~  705 (861)
T 2bpt_A          630 GKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSV  705 (861)
T ss_dssp             GGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred             hhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHH
Confidence             4455555  347899999998888899999999999888432 33344443  4667777888654 235799999999


Q ss_pred             HHhhchh
Q 009471          508 LASLSPS  514 (534)
Q Consensus       508 L~~L~~~  514 (534)
                      +..++..
T Consensus       706 l~~l~~~  712 (861)
T 2bpt_A          706 FGDIASN  712 (861)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888865

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.25  E-value=2.1e-09  Score=116.33  Aligned_cols=325  Identities=13%  Similarity=0.080  Sum_probs=238.1

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      +...+.++-..+++++...|.+++..|..+..-..+.      ..+....++++.+++...+..+--.+..++..++...
T Consensus        32 i~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~  105 (618)
T 1w63_A           32 IQKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH  105 (618)
T ss_dssp             HHHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH
Confidence            4455666667788878778888888777764322111      1356667788889999999888888888887654211


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-Cch
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPE  310 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~  310 (534)
                      .    -++..+.+-|+++++.++..|.++|+++.. ++....+     ++.+..++.+.++.+|..|+.++.++.. .++
T Consensus       106 ~----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~~l-----~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~  175 (618)
T 1w63_A          106 L----LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCRDL-----AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE  175 (618)
T ss_dssp             H----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHHHH-----HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred             H----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence            1    247888889999999999999999999974 4444443     4888999999999999999999999986 343


Q ss_pred             HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-----------------C
Q 009471          311 VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-----------------G  373 (534)
Q Consensus       311 ~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-----------------~  373 (534)
                      ..     .+.++.+.+++.+.+. .++..|+.+|..++..++.....+  ...++.++++|.                 +
T Consensus       176 ~v-----~~~~~~l~~lL~D~d~-~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~  247 (618)
T 1w63_A          176 LM-----EMFLPATKNLLNEKNH-GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISD  247 (618)
T ss_dssp             GG-----GGGGGGTTTSTTCCCH-HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred             HH-----HHHHHHHHHHhCCCCH-hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence            22     2567778888887776 899999999999998655432222  256777777653                 3


Q ss_pred             CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc------CCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHH
Q 009471          374 PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA------GSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLI  447 (534)
Q Consensus       374 ~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv  447 (534)
                      |..+...+.+|+.++..+..   ....+++.|..++..      .+..+...|++++..+...+..+.     .+++.|.
T Consensus       248 ~~~q~~il~~L~~l~~~~~~---~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~  319 (618)
T 1w63_A          248 PFLQVRILRLLRILGRNDDD---SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILG  319 (618)
T ss_dssp             HHHHHHHHHHHHHHTTTCHH---HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHH
Confidence            56788899999999873211   123455666666532      245899999999999876544332     3578899


Q ss_pred             HhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          448 KLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       448 ~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .++.+.++++|..|+.+|..++...   ...++  .....++.++.++ +..+|..++.+|..++..
T Consensus       320 ~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~--~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          320 RFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ--RHRSTIVDCLKDL-DVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             HHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG--GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCCchHHHHHHHHHHHHhhC---HHHHH--HHHHHHHHHccCC-ChhHHHHHHHHHHHHccc
Confidence            9999999999999999999997532   23444  3567888888875 457999999999999876

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.22  E-value=3.4e-10  Score=104.03  Aligned_cols=182  Identities=23%  Similarity=0.188  Sum_probs=154.7

Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH
Q 009471          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA  316 (534)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (534)
                      +..+.+++.|+++++.++..|+.+|..+..          ...++.|+.++.++++.++..++.+|..+..         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            458899999999999999999999998754          2457899999999999999999999988753         


Q ss_pred             hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHH
Q 009471          317 EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQE  394 (534)
Q Consensus       317 e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~  394 (534)
                       .+.++.++.++.++++ .++..++.+|..+..           ...++.|..++++  +.++..|+.+|+.+..     
T Consensus        75 -~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           75 -ERAVEPLIKALKDEDG-WVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             -GGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             -HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence             3578999999988776 899999999999864           2357888888876  4589999999999864     


Q ss_pred             HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                          ...++.|..++.+.++.++..|+.+|.++..          ...++.|..++.++++.+|..|..+|..+-
T Consensus       137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                3478899999999999999999999999953          235788889999999999999999999874

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.21  E-value=8.1e-10  Score=124.17  Aligned_cols=347  Identities=11%  Similarity=0.108  Sum_probs=228.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--HH
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDE-KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE--NW  232 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~--~~  232 (534)
                      ++.+...+.+.+...|..|+..+..++.... +.....+. ..++.++..++++++.+|..++++++.++..-...  ..
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            3334444567788999999999999986542 33333333 57889999999999999999999999998642100  00


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh------hHHHHHhCCChHHHHHHHccCC--hHHHHHHHHHHHH
Q 009471          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE------MARAIVGHGGVRPLIEICQTGD--SVSQAAAACTLKN  304 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~------~~~~l~~~g~i~~Lv~ll~~~~--~~~~~~a~~aL~n  304 (534)
                      -.-..+++.++..+++. +.++..++++|.+++..-.      ....+  ...++.|+.++.+.+  +.++..++.++..
T Consensus       450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~  526 (861)
T 2bpt_A          450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence            01123478888888876 8899999999999875311      11111  123577888887544  7889999999998


Q ss_pred             ccCCc--hHHHHHHhhCcHHHHHHHhhcC--------------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH
Q 009471          305 ISAVP--EVRQMLAEEGIVSVMIKLLDCG--------------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL  368 (534)
Q Consensus       305 La~~~--~~~~~i~e~g~i~~L~~ll~~~--------------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~  368 (534)
                      +....  +....+  ...++.+++.+...              ....++..++.+|.+++...+..-.. +-...++.++
T Consensus       527 l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~  603 (861)
T 2bpt_A          527 MVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFF  603 (861)
T ss_dssp             HHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHH
T ss_pred             HHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHH
Confidence            87632  222222  23566677666532              11246778899999888643321000 1123456666


Q ss_pred             HhhcC--C-chHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcC
Q 009471          369 AYLDG--P-LPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAG  441 (534)
Q Consensus       369 ~~L~~--~-~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g  441 (534)
                      ..+++  + .+++.++.++..++.  ........ ..+++.++..+++.++.++..++.++..++..  .+...++  ..
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~  680 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DA  680 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HH
Confidence            77755  4 689999999999986  22222222 34788899999888889999999999998853  3444444  45


Q ss_pred             chHHHHHhhcCCC--hHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCc----------hhHHHHHHHHH
Q 009471          442 CTPLLIKLLEAKP--NSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQ----------NTAKKYAVACL  508 (534)
Q Consensus       442 ~v~~Lv~ll~~~~--~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~----------~~~k~~a~~~L  508 (534)
                      .++.+.+.+.+.+  .+++..+..++..++.. .++...+..  ..++.+++.++..++          ..++..++.++
T Consensus       681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~  758 (861)
T 2bpt_A          681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence            6788888887654  88999999999999854 445555554  467888888875321          23566666666


Q ss_pred             Hhhchh
Q 009471          509 ASLSPS  514 (534)
Q Consensus       509 ~~L~~~  514 (534)
                      ..++..
T Consensus       759 ~~i~~~  764 (861)
T 2bpt_A          759 VGIVAG  764 (861)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666533

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.19  E-value=9.8e-11  Score=121.69  Aligned_cols=349  Identities=13%  Similarity=0.110  Sum_probs=227.3

Q ss_pred             hHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHH--------HH---hcCCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 009471          155 NTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVL--------AV---MGRSNIAALVQLLTATSPRIREKTVTVIC  221 (534)
Q Consensus       155 ~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~--------~i---~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~  221 (534)
                      ++..|+..+..+  ++..|..|+..|.++.........        .+   .....-..|+..|.++++.+ ..++.++.
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~  114 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVA  114 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHH
Confidence            345566666654  678899999999998754311100        00   01123456778888887777 88889999


Q ss_pred             HhhcCCchhHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHHHccC--ChHHH
Q 009471          222 SLAESGSCENWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSA--EMARAIVGHGGVRPLIEICQTG--DSVSQ  295 (534)
Q Consensus       222 ~La~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~--~~~~~l~~~g~i~~Lv~ll~~~--~~~~~  295 (534)
                      .++.......  .-.+.++.|+..+.++  ++.+++.++.+|..++...  +...... ...++.++..+.+.  ++.+|
T Consensus       115 ~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr  191 (462)
T 1ibr_B          115 GIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVK  191 (462)
T ss_dssp             HHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHH
T ss_pred             HHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHH
Confidence            9986531100  1246799999999998  8999999999999997632  1100000 12457888888887  78999


Q ss_pred             HHHHHHHHHccCCc-hHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC
Q 009471          296 AAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG  373 (534)
Q Consensus       296 ~~a~~aL~nLa~~~-~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~  373 (534)
                      ..++.++.++...- +.. ......-+++.+.+.+.+.+. .++..++.+|..++...+..-...+....++.++..+++
T Consensus       192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  270 (462)
T 1ibr_B          192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS  270 (462)
T ss_dssp             HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999876421 111 011112245666666666665 899999999999986443211111111455666666655


Q ss_pred             --CchHHHHHHHHHHhhcCc-cH------------------HHHHh---cCcHHHHHHHHhcC-------CHHHHHHHHH
Q 009471          374 --PLPQESAVGALRNLVGSV-SQ------------------EVLIS---LGFFPRLVHVLKAG-------SLGAQQAAAS  422 (534)
Q Consensus       374 --~~~~~~a~~aL~~La~~~-~~------------------~~l~~---~~~i~~Lv~lL~~~-------~~~v~~~A~~  422 (534)
                        +.++..++.++.+++... ..                  ..+.+   ..+++.++..+...       +..++..|+.
T Consensus       271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~  350 (462)
T 1ibr_B          271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV  350 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence              568889999988887621 00                  00111   23466666666432       3478999999


Q ss_pred             HHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc--chHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471          423 ALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ--NCREVKRDDKSVPNLVQLLDPSPQNTA  500 (534)
Q Consensus       423 aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~--~~~~~~~~~~~v~~Lv~lL~~~~~~~~  500 (534)
                      +|..++..-. ...+  ...++.+...+.+.+..+|..|+.+|..++....  ......  ...++.++.+|.+. +..+
T Consensus       351 ~L~~l~~~~~-~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~-~~~V  424 (462)
T 1ibr_B          351 CLMLLATCCE-DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP-SVVV  424 (462)
T ss_dssp             HHHHHHHHTT-TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCS-CHHH
T ss_pred             HHHHHHHhcc-HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCC-CHHH
Confidence            9999885311 1111  2357788888888999999999999999985432  112222  35788899999775 4579


Q ss_pred             HHHHHHHHHhhchh
Q 009471          501 KKYAVACLASLSPS  514 (534)
Q Consensus       501 k~~a~~~L~~L~~~  514 (534)
                      |..|+++|.+++..
T Consensus       425 r~~a~~~l~~~~~~  438 (462)
T 1ibr_B          425 RDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999865

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.18  E-value=1.5e-09  Score=122.11  Aligned_cols=350  Identities=15%  Similarity=0.110  Sum_probs=233.0

Q ss_pred             chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc
Q 009471          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~  228 (534)
                      ..++.++..+.++  ++..+..++..|..++..- ++..... -...++.+...++++  +..+|..|+.++..+...-+
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4678888888888  8999999999999998642 2211111 124577788888877  68999999999999876422


Q ss_pred             -h-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471          229 -C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (534)
Q Consensus       229 -~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (534)
                       . ........+++.+...+.+.+..++..++.+|..+... ++.-........++.++..+.+.++.++..++..+.++
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence             1 11111122577777788888899999999999998754 22222222336678888888888899999999988888


Q ss_pred             cCCchH-----H--------------HHH--HhhCcHHHHHHHhhc-------CCChhHHHHHHHHHHHHccCChHHHHH
Q 009471          306 SAVPEV-----R--------------QML--AEEGIVSVMIKLLDC-------GILLGSKEYAAECLQNLTASNENLRRS  357 (534)
Q Consensus       306 a~~~~~-----~--------------~~i--~e~g~i~~L~~ll~~-------~~~~~v~~~a~~~L~~La~~~~~~~~~  357 (534)
                      +.....     .              ..+  .-...++.+++.+..       .+. .++..+..+|..++...+.   .
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~---~  362 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCED---D  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcH---h
Confidence            753200     0              000  013456777777742       233 6889999999998863221   1


Q ss_pred             HHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hh
Q 009471          358 VVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AE  432 (534)
Q Consensus       358 i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~  432 (534)
                      ++ ...++.+...+.+  +.+|..++.++++++.....+.+  .-..+++.++..+.+.++.++..|++++.+++.. +.
T Consensus       363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence            11 1234455555655  45899999999999973222211  1245788999999999999999999999999853 22


Q ss_pred             ---HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc---------------chHHHHhhCCCHHHHHhhcCC
Q 009471          433 ---MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ---------------NCREVKRDDKSVPNLVQLLDP  494 (534)
Q Consensus       433 ---~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~---------------~~~~~~~~~~~v~~Lv~lL~~  494 (534)
                         ....+  ...++.|+..+.+. +.++..++.+|.+++....               ....+..  ..++.|++.+..
T Consensus       442 ~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~il~~L~~~l~~  516 (876)
T 1qgr_A          442 AAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE--LIVQKLLETTDR  516 (876)
T ss_dssp             GTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH--HHHHHHHHHTTS
T ss_pred             hcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH--HHHHHHHHHHhC
Confidence               11222  24577888888764 8899999999999984321               1122222  356777788765


Q ss_pred             CC--chhHHHHHHHHHHhhchh
Q 009471          495 SP--QNTAKKYAVACLASLSPS  514 (534)
Q Consensus       495 ~~--~~~~k~~a~~~L~~L~~~  514 (534)
                      ..  +..++..+..++..++..
T Consensus       517 ~~~~~~~~r~~~~~~l~~l~~~  538 (876)
T 1qgr_A          517 PDGHQNNLRSSAYESLMEIVKN  538 (876)
T ss_dssp             CSSCSTTHHHHHHHHHHHHHHT
T ss_pred             cCcchhhHHHHHHHHHHHHHHH
Confidence            42  235777777777777654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.15  E-value=1.1e-10  Score=121.30  Aligned_cols=304  Identities=18%  Similarity=0.117  Sum_probs=207.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCC-c-hhHH
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESG-S-CENW  232 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~-~-~~~~  232 (534)
                      ..++..|.+.++.. ..++..+..++..+....   .-.+.++.|+..++++  ++.+++.++.+|..++.+- + .-..
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~  168 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence            34666777776666 778888888875421100   1246799999999998  8999999999999998743 1 1011


Q ss_pred             HHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcC-hhhH--HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          233 LVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMS-AEMA--RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~-~~~~--~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                      . -..+++.++..+++.  +..++..|+.++.++... .++.  +.+ ..-.++.+...+.++++.++..++.+|..++.
T Consensus       169 ~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~  246 (462)
T 1ibr_B          169 K-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  246 (462)
T ss_dssp             G-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            1 123678889999887  789999999999987542 1111  101 01124666677778899999999999998885


Q ss_pred             Cc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH-----------------HHHHh---cCChHH
Q 009471          308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR-----------------RSVVS---EGGIRS  366 (534)
Q Consensus       308 ~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~-----------------~~i~~---~g~l~~  366 (534)
                      .. +.-......++++.++..+.+.++ .++..++..+..++.......                 ..+++   ...++.
T Consensus       247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  325 (462)
T 1ibr_B          247 LYYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (462)
T ss_dssp             HCGGGCTTTTTTTHHHHHHHHHHCSSH-HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence            22 111111111677777777777665 899999999998875311000                 00110   224556


Q ss_pred             HHHhhcC---------CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh--h-HH
Q 009471          367 LLAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA--E-MK  434 (534)
Q Consensus       367 L~~~L~~---------~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~--~-~~  434 (534)
                      +++.+.+         ..++..|..+|..++.... +.+. ..+++.+...+.+.+..++..|+.+++.++...  + ..
T Consensus       326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~  403 (462)
T 1ibr_B          326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK  403 (462)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHH
Confidence            6666632         3578999999999987211 1222 346777778888899999999999999999642  2 22


Q ss_pred             HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          435 KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       435 ~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ..+  ...+|.++.++.++++.+|..|+++|..++..
T Consensus       404 ~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          404 PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            222  56899999999999999999999999999844

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.13  E-value=1.4e-09  Score=122.37  Aligned_cols=346  Identities=14%  Similarity=0.105  Sum_probs=224.8

Q ss_pred             chHHHHHHHHhc-------CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471          154 GNTRELLARLQI-------GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES  226 (534)
Q Consensus       154 ~~i~~Ll~~L~~-------~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (534)
                      ..++.++..+..       ++...|..|...|..++...++.   ++. ..++.+...++++++.+|+.|+.+++.++..
T Consensus       321 ~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~  396 (876)
T 1qgr_A          321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  396 (876)
T ss_dssp             HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence            345556666642       24456777888887776543321   122 4566777788888999999999999999976


Q ss_pred             Cc-h-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh----HHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 009471          227 GS-C-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM----ARAIVGHGGVRPLIEICQTGDSVSQAAAAC  300 (534)
Q Consensus       227 ~~-~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~----~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~  300 (534)
                      .. . ... .-..+++.++..+++.++.++..|+++|.+++.....    ...+  ...++.|+..+.+. +.++..+++
T Consensus       397 ~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~  472 (876)
T 1qgr_A          397 PEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCW  472 (876)
T ss_dssp             SCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred             CCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHH
Confidence            43 1 111 1234789999999999999999999999999764211    0111  12357788888774 889999999


Q ss_pred             HHHHccCCch----------------HHHHHHhhCcHHHHHHHhhcCC--ChhHHHHHHHHHHHHccCChHHHHHHHhcC
Q 009471          301 TLKNISAVPE----------------VRQMLAEEGIVSVMIKLLDCGI--LLGSKEYAAECLQNLTASNENLRRSVVSEG  362 (534)
Q Consensus       301 aL~nLa~~~~----------------~~~~i~e~g~i~~L~~ll~~~~--~~~v~~~a~~~L~~La~~~~~~~~~i~~~g  362 (534)
                      +|.+++....                ....+  ..+++.++..+...+  ...++..+..++..++...+...... -..
T Consensus       473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-~~~  549 (876)
T 1qgr_A          473 AFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA-VQK  549 (876)
T ss_dssp             HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHH-HHH
T ss_pred             HHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHH-HHH
Confidence            9999875311                11111  346777888876542  22678888899988886432211111 112


Q ss_pred             ChHHHHHhhc----------C-------CchHHHHHHHHHHhhcCccHHHHH--hcCcHHHHHHHHhcCC--HHHHHHHH
Q 009471          363 GIRSLLAYLD----------G-------PLPQESAVGALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGS--LGAQQAAA  421 (534)
Q Consensus       363 ~l~~L~~~L~----------~-------~~~~~~a~~aL~~La~~~~~~~l~--~~~~i~~Lv~lL~~~~--~~v~~~A~  421 (534)
                      .++.+++.+.          +       ++++..++.++..++..-....+.  -..+++.++.++++.+  +.++..++
T Consensus       550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~  629 (876)
T 1qgr_A          550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDAL  629 (876)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence            3444444332          1       234677888898888732212221  2346777888887664  47899999


Q ss_pred             HHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCC-ChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCC-C
Q 009471          422 SALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAK-PNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPS-P  496 (534)
Q Consensus       422 ~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~-~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~-~  496 (534)
                      .++..++..  ..+..++  ..+++.|...+.+. ++.++..|..++..++.. ......+..  ..++.++..+.++ .
T Consensus       630 ~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~i~~~l~~~l~~~~~  705 (876)
T 1qgr_A          630 MAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD--EVMQLLLENLGNENV  705 (876)
T ss_dssp             HHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhCCccc
Confidence            999999853  3333333  23578888888866 889999999999999843 233334443  5677888888873 3


Q ss_pred             chhHHHHHHHHHHhhchh
Q 009471          497 QNTAKKYAVACLASLSPS  514 (534)
Q Consensus       497 ~~~~k~~a~~~L~~L~~~  514 (534)
                      +..++..+..++.+++..
T Consensus       706 ~~~~~~~~~~~l~~i~~~  723 (876)
T 1qgr_A          706 HRSVKPQILSVFGDIALA  723 (876)
T ss_dssp             CGGGHHHHHHHHHHHHHH
T ss_pred             cHHhhHHHHHHHHHHHHH
Confidence            446899999999998763

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.10  E-value=5.5e-10  Score=130.66  Aligned_cols=344  Identities=15%  Similarity=0.126  Sum_probs=233.8

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ..+..++..+.+.|.+.|..|...|.+....+......-.....++.+++.|.++++.+|..|+.+|+.++..-+. .. 
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~-   83 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ-   83 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence            4578889999999999999999999987754311000000114578889999988999999999999999875432 11 


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH------HHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHcc
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA------RAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~------~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa  306 (534)
                       ...+++.++..+.+++..+|..++.+|..++..-...      ..-.....++.|+..+. ++++.++..++.+|.+++
T Consensus        84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence             1234788888888888889999999999887432111      00111234688999998 588999999999999987


Q ss_pred             C--CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---CchHHHHH
Q 009471          307 A--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---PLPQESAV  381 (534)
Q Consensus       307 ~--~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~  381 (534)
                      .  .+.....+  ...++.++..+.+.+. .+|..++.+|..++...+.   .+ -...++.+++.+.+   +..+..++
T Consensus       163 ~~~~~~l~~~~--~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          163 SRQGGLLVNFH--PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHTCSSCTTTH--HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHhHhHHHHHH--HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHH
Confidence            4  11111111  3457778888877765 8999999999999975432   11 22347777777743   35677888


Q ss_pred             HHHHHhhcCccHHHHH--hcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcC-----
Q 009471          382 GALRNLVGSVSQEVLI--SLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEA-----  452 (534)
Q Consensus       382 ~aL~~La~~~~~~~l~--~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~-----  452 (534)
                      .+++.++..... .+.  -..+++.++..+.+.++.++..++.++..++..  .+...++  ...++.+++.+..     
T Consensus       236 ~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~  312 (1230)
T 1u6g_C          236 QCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYN  312 (1230)
T ss_dssp             HHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC----
T ss_pred             HHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCC
Confidence            888888862111 121  246789999999888899999999999988753  3333333  2234444444321     


Q ss_pred             --------------------------------CChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCCCCchh
Q 009471          453 --------------------------------KPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNT  499 (534)
Q Consensus       453 --------------------------------~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~  499 (534)
                                                      ....+|..|+.+|..++...+ ....++.  ..++.++..+... ++.
T Consensus       313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~d~-~~~  389 (1230)
T 1u6g_C          313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK--TVSPALISRFKER-EEN  389 (1230)
T ss_dssp             --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT--TTHHHHHSTTSCS-SSH
T ss_pred             CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH--HHHHHHHHHcCCC-chH
Confidence                                            123578999999999986433 2345554  6788888888554 457


Q ss_pred             HHHHHHHHHHhhch
Q 009471          500 AKKYAVACLASLSP  513 (534)
Q Consensus       500 ~k~~a~~~L~~L~~  513 (534)
                      +|..+..++..+..
T Consensus       390 Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          390 VKADVFHAYLSLLK  403 (1230)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.09  E-value=8.4e-08  Score=103.50  Aligned_cols=328  Identities=14%  Similarity=0.096  Sum_probs=230.1

Q ss_pred             hhchHHHHHHHHhc---CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471          152 THGNTRELLARLQI---GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~---~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (534)
                      +...+.++-..+++   .+...+.+++..+..+..-..+      -..+....++++.+++...+..+--++..++..++
T Consensus        33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~  106 (621)
T 2vgl_A           33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS  106 (621)
T ss_dssp             HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc
Confidence            34455556666664   3678888888887776432221      12457778889999999999999999999987664


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH--ccCChHHHHHHHHHHHHcc
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC--QTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll--~~~~~~~~~~a~~aL~nLa  306 (534)
                      ..-.+    ++..+.+=|.++++.++..|..+|+++.. ++..+.+     ++.+.+.+  .+.+|.+|..|+.++.++.
T Consensus       107 e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~  176 (621)
T 2vgl_A          107 ELIRL----INNAIKNDLASRNPTFMGLALHCIANVGS-REMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLY  176 (621)
T ss_dssp             HHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            21111    36777788889999999999999999954 5555544     48888999  8899999999999999888


Q ss_pred             C-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHH----Hhhc---------
Q 009471          307 A-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLL----AYLD---------  372 (534)
Q Consensus       307 ~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~----~~L~---------  372 (534)
                      . +|+..   ...+.++.+.+++.+.++ .++..|+.++..++..++..-.     ..++.++    +++.         
T Consensus       177 ~~~p~~~---~~~~~~~~l~~lL~d~d~-~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~~~~~  247 (621)
T 2vgl_A          177 RTSPDLV---PMGDWTSRVVHLLNDQHL-GVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSRIVTSASTDLQDY  247 (621)
T ss_dssp             HHCGGGC---CCCSCHHHHHHHTTCSCH-HHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHHHHHCCSSSCSTT
T ss_pred             HhChhhc---CchhHHHHHHHHhCCCCc-cHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHHHHhCCCCCccch
Confidence            6 33221   124889999999987776 8999999999999976553211     1233333    3321         


Q ss_pred             ------CCchHHHHHHHHHHhhcCccHH---HHHhcCcHHHHHHHH---------hcCC--HHHHHHHHHHHHHhcCChh
Q 009471          373 ------GPLPQESAVGALRNLVGSVSQE---VLISLGFFPRLVHVL---------KAGS--LGAQQAAASALCRVCTSAE  432 (534)
Q Consensus       373 ------~~~~~~~a~~aL~~La~~~~~~---~l~~~~~i~~Lv~lL---------~~~~--~~v~~~A~~aL~~la~~~~  432 (534)
                            +|..|...+..|..++..+..+   .+.  .+++.++..+         ++.+  ..|..+++.++..+...++
T Consensus       248 ~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~  325 (621)
T 2vgl_A          248 TYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN  325 (621)
T ss_dssp             EETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH
Confidence                  2456777788888777632221   111  2344444332         1223  3888899999999976555


Q ss_pred             HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       433 ~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      ..+.     ++..|..++.+.++++|..|+..|..++...+. ..+++  .....++.+|..+++..+|..++.+|..++
T Consensus       326 ~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          326 LLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             HHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            4443     477888999889999999999999999866543 23444  457888888883335679999999999999


Q ss_pred             hh
Q 009471          513 PS  514 (534)
Q Consensus       513 ~~  514 (534)
                      ..
T Consensus       398 ~~  399 (621)
T 2vgl_A          398 DR  399 (621)
T ss_dssp             CH
T ss_pred             Ch
Confidence            66

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.02  E-value=2.4e-09  Score=117.01  Aligned_cols=192  Identities=14%  Similarity=0.183  Sum_probs=152.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhhcC--hhhHHH
Q 009471          197 NIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMS--AEMARA  273 (534)
Q Consensus       197 ~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~--~~~~~~  273 (534)
                      .+.++++.|++++++.|..|+.+|.+|+.+++.+..+...|++.+++. +|.+.+.+++..|+++|.||+.+  ++.+..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            456677889999999999999999999988788999999999987654 78889999999999999999864  677888


Q ss_pred             HHhCCChHHHHHHHccCC---------------------hHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhhcC
Q 009471          274 IVGHGGVRPLIEICQTGD---------------------SVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLDCG  331 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~~~  331 (534)
                      +...|++++|..+++...                     +.+...++.+|++|+... +....+.+.+.++.++..+.+.
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            999999999999886411                     123346788999999744 6777888889999999998433


Q ss_pred             --CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH---HHHhhcC-CchHHHHHHHHHHhh
Q 009471          332 --ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS---LLAYLDG-PLPQESAVGALRNLV  388 (534)
Q Consensus       332 --~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~---L~~~L~~-~~~~~~a~~aL~~La  388 (534)
                        .+.+++..++.+|.+++.+++...+.+.+.+....   ++.+..+ ...+..+++.|.|+.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence              33478999999999999999988888887665432   2222233 456778889999875

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.99  E-value=6.4e-08  Score=104.45  Aligned_cols=328  Identities=13%  Similarity=0.124  Sum_probs=224.6

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      +.....+..+++.+.+.|+-+.-.+..++..+++....     .+..+.+=|+++++.+|..|+++|+++...+ ..   
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e-~~---  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSRE-MA---  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH-HH---
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCHH-HH---
Confidence            44677788889999999999988999998877754322     3677888888999999999999999996422 22   


Q ss_pred             HhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchH
Q 009471          234 VSEGVLPPLIRLV--ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV  311 (534)
Q Consensus       234 ~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~  311 (534)
                        ..+++.+.+.|  .+.++.++..|+.++.++....+.  .+-..+.++.+..++.+.++.++..|+.++..++.... 
T Consensus       145 --~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~-  219 (621)
T 2vgl_A          145 --EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP-  219 (621)
T ss_dssp             --HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH-
T ss_pred             --HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh-
Confidence              23578899999  888999999999999998763221  11114778999999999999999999999999876321 


Q ss_pred             HHHHHhhCcHHHHH----HHhhcC-C-----------ChhHHHHHHHHHHHHccC-ChHHHHHHHhcCChHHHHHhhcC-
Q 009471          312 RQMLAEEGIVSVMI----KLLDCG-I-----------LLGSKEYAAECLQNLTAS-NENLRRSVVSEGGIRSLLAYLDG-  373 (534)
Q Consensus       312 ~~~i~e~g~i~~L~----~ll~~~-~-----------~~~v~~~a~~~L~~La~~-~~~~~~~i~~~g~l~~L~~~L~~-  373 (534)
                       ..+  ...++.++    +++..+ .           ++-.+...+..|..++.. ++..+..+.+  .++.+++.+.+ 
T Consensus       220 -~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~  294 (621)
T 2vgl_A          220 -EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP  294 (621)
T ss_dssp             -HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred             -HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence             111  12344444    444332 1           224677888888888763 3455444432  23334433211 


Q ss_pred             C------------chHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcC
Q 009471          374 P------------LPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAG  441 (534)
Q Consensus       374 ~------------~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g  441 (534)
                      +            .+...|+.++..+..  ... +.. ..+..|..++.+.++.++..|+..|..++........+  ..
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~-~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~  368 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS--EPN-LLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KT  368 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHH-HHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HT
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC--cHH-HHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HH
Confidence            2            445566777776653  122 111 35778888898899999999999999998652212333  34


Q ss_pred             chHHHHHhhc-CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          442 CTPLLIKLLE-AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       442 ~v~~Lv~ll~-~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ....++..+. +.+..++..++..|..++ +..|...++.      .|...+... +.+.+..++..+..++..
T Consensus       369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-~~~Nv~~Iv~------eL~~yl~~~-d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          369 HIETVINALKTERDVSVRQRAVDLLYAMC-DRSNAQQIVA------EMLSYLETA-DYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             THHHHHHHHTTCCCHHHHHHHHHHHHHHC-CHHHHHHHHH------HHHHHHHHC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHhHHHHHHHHHHHHc-ChhhHHHHHH------HHHHHHHhc-CHHHHHHHHHHHHHHHHh
Confidence            5778888888 899999999999999995 5556555554      344444333 335777777777777644

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.93  E-value=3.7e-09  Score=115.58  Aligned_cols=190  Identities=14%  Similarity=0.120  Sum_probs=148.4

Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHH-HHHccCChHHHHHHHHHHHHccC--CchHHHH
Q 009471          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI-EICQTGDSVSQAAAACTLKNISA--VPEVRQM  314 (534)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~  314 (534)
                      .+.++++.|+++++..|..|+++|.+|+.++..+..+...|+|..++ .++.+.+.+++..|+++|+||+.  +.+.+..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            35567788999999999999999999999888888899999998765 56888999999999999999996  4589999


Q ss_pred             HHhhCcHHHHHHHhhcCCC--------------------hhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-
Q 009471          315 LAEEGIVSVMIKLLDCGIL--------------------LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-  373 (534)
Q Consensus       315 i~e~g~i~~L~~ll~~~~~--------------------~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-  373 (534)
                      +.+.|+++.|..+++....                    ..+.++++.+|.+|+..++.....+...++++.|+..+.+ 
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            9999999999999853110                    0244578889999998888888888889999999998732 


Q ss_pred             ----CchHHHHHHHHHHhhcC--ccHHHHHhcCc---HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          374 ----PLPQESAVGALRNLVGS--VSQEVLISLGF---FPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       374 ----~~~~~~a~~aL~~La~~--~~~~~l~~~~~---i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                          .+++..|+.+|.+++..  .....+.+.+.   +..+..+. ..+...+..++++|.|+.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence                35788999999999982  33445555543   33333333 333345677888888873

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.92  E-value=4.7e-08  Score=114.30  Aligned_cols=346  Identities=11%  Similarity=0.082  Sum_probs=228.5

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE-  230 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~-  230 (534)
                      ....++.++..|.+.+++.|..|+..|..++...+..  . . ...++.|+..+.++++.+|..|+.+|..++..-... 
T Consensus        46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~-~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~  121 (1230)
T 1u6g_C           46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q-V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS  121 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H-H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H-H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            3456778888888889999999999999998654431  1 1 135778888888888899999999999998643311 


Q ss_pred             -----HHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCh-----hhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 009471          231 -----NWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSA-----EMARAIVGHGGVRPLIEICQTGDSVSQAAAA  299 (534)
Q Consensus       231 -----~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~-----~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~  299 (534)
                           ..-....+++.|+..++ ++++.++..|..+|..++...     +....     .++.|+..+.++++.+|..++
T Consensus       122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~-----ll~~l~~~L~~~~~~vR~~a~  196 (1230)
T 1u6g_C          122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-----ILTCLLPQLTSPRLAVRKRTI  196 (1230)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHH-----HHHHHGGGGGCSSHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHH-----HHHHHHHHHcCCcHHHHHHHH
Confidence                 11123356899999998 478899999999999987421     11222     347777788888999999999


Q ss_pred             HHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchH
Q 009471          300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ  377 (534)
Q Consensus       300 ~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~  377 (534)
                      .+|..++.....  .+ -...++.+++.+.+.....++..++.++..++...+..- .-.-...++.+++.+.+  +++|
T Consensus       197 ~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~~l~~~ll~~l~d~~~~vR  272 (1230)
T 1u6g_C          197 IALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVDDDELR  272 (1230)
T ss_dssp             HHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSCCTTTH
T ss_pred             HHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhcCCCHHHH
Confidence            999999874321  11 245688888888655432567778888888876322210 00113567777887755  7789


Q ss_pred             HHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhc-------------------------------------CCHHHHH
Q 009471          378 ESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKA-------------------------------------GSLGAQQ  418 (534)
Q Consensus       378 ~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~-------------------------------------~~~~v~~  418 (534)
                      +.++.++..++.  +....... ..+++.++..+..                                     ....++.
T Consensus       273 ~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~  351 (1230)
T 1u6g_C          273 EYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRR  351 (1230)
T ss_dssp             HHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHH
T ss_pred             HHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHH
Confidence            999999999887  22111111 1233333333211                                     1125788


Q ss_pred             HHHHHHHHhcCC-hh-HHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc----------------chHHHHh
Q 009471          419 AAASALCRVCTS-AE-MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ----------------NCREVKR  480 (534)
Q Consensus       419 ~A~~aL~~la~~-~~-~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~----------------~~~~~~~  480 (534)
                      .|+.++..++.. ++ ....+  ...++.++..+.+.++.+|..+..++..++....                ++...+.
T Consensus       352 ~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (1230)
T 1u6g_C          352 AAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ  429 (1230)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHH
T ss_pred             HHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHH
Confidence            999999998864 32 34444  4568888888888889999999999887763211                1111111


Q ss_pred             h--CCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          481 D--DKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       481 ~--~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .  ...++.+.+.+.+. +..++..++.+|..++..
T Consensus       430 ~~l~~ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          430 SQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence            0  13445556667765 346778888888877654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.81  E-value=1.7e-06  Score=87.62  Aligned_cols=315  Identities=15%  Similarity=0.145  Sum_probs=207.1

Q ss_pred             chHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcCh---HhHHHHhcCCc-HHHHHH-HhcCCCHHHHHHHHHHHHHhhcCC
Q 009471          154 GNTRELLARLQ-IGHLEAKHKALDSLVEAMKEDE---KNVLAVMGRSN-IAALVQ-LLTATSPRIREKTVTVICSLAESG  227 (534)
Q Consensus       154 ~~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~---~~~~~i~~~g~-v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~  227 (534)
                      ..+..++..|+ +.+.+.....+.-+.+++.+++   .....+.+... ...+.. ++..+++-....+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            35677888887 5678888888888888888776   44444443322 222333 333344566677776666665332


Q ss_pred             chhHHHHhcCCHH--HHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCC--hHHHHHHHcc-------------
Q 009471          228 SCENWLVSEGVLP--PLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGG--VRPLIEICQT-------------  289 (534)
Q Consensus       228 ~~~~~l~~~g~i~--~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~--i~~Lv~ll~~-------------  289 (534)
                      ..-... -...+.  -++..|.. ++...+..++.+|..|...++.+..+.+.++  ++.++.+++.             
T Consensus       157 ~~~~~~-l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~  235 (480)
T 1ho8_A          157 LHNVKL-VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  235 (480)
T ss_dssp             TCCHHH-HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             CccHhH-HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence            210100 011122  34555655 3456677899999999999999999887554  5666554431             


Q ss_pred             --C--ChHHHHHHHHHHHHccCCchHHHHHHhhCcH--HHHHHHhhcCCChhHHHHHHHHHHHHccCCh----H-HHHHH
Q 009471          290 --G--DSVSQAAAACTLKNISAVPEVRQMLAEEGIV--SVMIKLLDCGILLGSKEYAAECLQNLTASNE----N-LRRSV  358 (534)
Q Consensus       290 --~--~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i--~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~----~-~~~~i  358 (534)
                        +  ...++..++-++|-|+..++....+...++.  +.++.+++....+.+.+-++.+|.|+....+    . ..+.+
T Consensus       236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~  315 (480)
T 1ho8_A          236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  315 (480)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHH
Confidence              1  2345789999999999999988888877754  6777888877766899999999999998552    1 22334


Q ss_pred             HhcCChHHHHHhhcC-----CchHH-------HHHHHHHHhhc----------------Cc---------cHHHHHh--c
Q 009471          359 VSEGGIRSLLAYLDG-----PLPQE-------SAVGALRNLVG----------------SV---------SQEVLIS--L  399 (534)
Q Consensus       359 ~~~g~l~~L~~~L~~-----~~~~~-------~a~~aL~~La~----------------~~---------~~~~l~~--~  399 (534)
                      +..++ .++++.|..     +++.+       .--..+..+++                +.         +...+.+  .
T Consensus       316 ~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~  394 (480)
T 1ho8_A          316 LLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNY  394 (480)
T ss_dssp             HHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGG
T ss_pred             HHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcch
Confidence            34444 445555532     22221       11111222221                10         1112222  2


Q ss_pred             CcHHHHHHHHhc----------CCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHh
Q 009471          400 GFFPRLVHVLKA----------GSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSL  468 (534)
Q Consensus       400 ~~i~~Lv~lL~~----------~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L  468 (534)
                      ..+..|+++|.+          .++.+..-||.=|+.+++. |+.+..+.+.|+=..+++++.+++++|+..|+.|+..+
T Consensus       395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  474 (480)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            347889999973          3688899999999999965 99999998889999999999999999999999999877


Q ss_pred             cC
Q 009471          469 VT  470 (534)
Q Consensus       469 ~~  470 (534)
                      ..
T Consensus       475 m~  476 (480)
T 1ho8_A          475 IG  476 (480)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.59  E-value=2.7e-07  Score=87.27  Aligned_cols=182  Identities=13%  Similarity=0.151  Sum_probs=137.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhHHHHhc
Q 009471          158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESGSCENWLVSE  236 (534)
Q Consensus       158 ~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~~~~~~~l~~~  236 (534)
                      .++..+.+.+...|..|+..|..++...++...... ...++.|...+. +++..++..|+.+++.++..-...-.-.-.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~   97 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS   97 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            366778899999999999999999876432110000 134777888884 899999999999999998543211011123


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC--ch--HH
Q 009471          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PE--VR  312 (534)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~--~~  312 (534)
                      .+++.++..+.+.+..+++.+..+|..+....... .     .++.+...+++.++.+|..++..|..+...  ++  ..
T Consensus        98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~-~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~  171 (242)
T 2qk2_A           98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE-A-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK  171 (242)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH-H-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH-H-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence            46999999999999999999999999998754322 2     247788889999999999999999996543  22  12


Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      ..+  ..+++.++.++.+... ++|..|..++..++.
T Consensus       172 ~~l--~~l~p~l~~~l~D~~~-~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          172 KLL--KLLTTSLVKTLNEPDP-TVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHH--HHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHH
Confidence            222  3578999999988886 899999999999885

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.56  E-value=1.5e-05  Score=88.68  Aligned_cols=292  Identities=14%  Similarity=0.174  Sum_probs=208.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hh
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE  230 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~  230 (534)
                      .+.+++..+...+...+..++..+.++...+...  ..+..+.++.|.+.+.+....  +.|+.++..++....    ..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence            4556777777766666788888999887644211  112235677788877765433  999999999996543    22


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHccC
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTG-DSVSQAAAACTLKNISA  307 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~--~~~~~~~l~~~g~i~~Lv~ll~~~-~~~~~~~a~~aL~nLa~  307 (534)
                      -.++  +.++.++....+....++..|..+...+..  +++....+     +|.|+..+.+. .|..+..|+.++..|+.
T Consensus        91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKAL-----LPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            2222  578888888888888899988888777743  34444444     49999988765 69999999999999986


Q ss_pred             CchHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc--CChHHHHHHHhcCChHHHHHhhcCCchHHHHHHH
Q 009471          308 VPEVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTA--SNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGA  383 (534)
Q Consensus       308 ~~~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~--~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~a  383 (534)
                      ..  ...+..  ..+||.+-+.+.+-.+ +++..|..++..+|.  +|.+.      +..+|.|++.+.+|+-...++..
T Consensus       164 ~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~~~~~~~~  234 (986)
T 2iw3_A          164 AA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTEVPETVHL  234 (986)
T ss_dssp             HS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTHHHHHHHH
T ss_pred             Hh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhhhHHHHHH
Confidence            43  223322  6678888888877776 899999999999987  33332      23488999999988777777777


Q ss_pred             HHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---h-hHHHHHHhcCchHHHHHhhc-CCChHH
Q 009471          384 LRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS---A-EMKKLVGEAGCTPLLIKLLE-AKPNSV  457 (534)
Q Consensus       384 L~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~---~-~~~~~i~~~g~v~~Lv~ll~-~~~~~v  457 (534)
                      |..-++ .+.....+. =++|.|.+-|+..+..+++.++.++.|||+-   + +.+..+  ...+|.|.+... ..+|++
T Consensus       235 l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          235 LGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             HTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHH
T ss_pred             hhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHH
Confidence            777766 322221111 1467788888888999999999999999964   3 333333  456777777665 568999


Q ss_pred             HHHHHHHHHHhc
Q 009471          458 REVAAQAISSLV  469 (534)
Q Consensus       458 ~~~A~~aL~~L~  469 (534)
                      |+.+..++..|-
T Consensus       312 r~~~~~a~~~l~  323 (986)
T 2iw3_A          312 REVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988888874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.54  E-value=1.9e-06  Score=78.07  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=145.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l  233 (534)
                      .+.-++..|...|+..+..++..|-++++.-++......-...++.+++++++.|..+.-.|+++|..|-.+.+ ....+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            56677788899999999999999999998754433333334789999999999999999999999999988775 33333


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (534)
                      ..  +...+..+++++++-.++.++..+..+......+..+      ..+.+++.+.++.++..+..+|.|++...+...
T Consensus       114 ~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~------~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~  185 (265)
T 3b2a_A          114 LK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVR------TYINELVVSPDLYTKVAGFCLFLNMLNSSADSG  185 (265)
T ss_dssp             HH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHH------HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred             HH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHH------HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence            22  3788889999999999999999999994444344433      778899999999999999999999997432111


Q ss_pred             HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccC
Q 009471          314 MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       314 ~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~  350 (534)
                      .+  .+++.-+-.++.+.++ .+++.|+.++-.+...
T Consensus       186 i~--~~I~~eI~elL~~eD~-~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          186 HL--TLILDEIPSLLQNDNE-FIVELALDVLEKALSF  219 (265)
T ss_dssp             CG--GGTTTTHHHHHTCSCH-HHHHHHHHHHHHHTTS
T ss_pred             HH--HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcC
Confidence            11  3345556778888876 8999999999999873

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.53  E-value=5.8e-06  Score=81.80  Aligned_cols=304  Identities=12%  Similarity=0.086  Sum_probs=170.2

Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV  246 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL  246 (534)
                      ++.....++..+..+....+....... ...-...++++.++|...+...--.+..++..++..  +   =++..+.+=+
T Consensus        40 ~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl  113 (355)
T 3tjz_B           40 NPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDM  113 (355)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhc
Confidence            445455667766666543322111000 023455678999999999999988888888774321  1   3578888899


Q ss_pred             ccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHH
Q 009471          247 ESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMI  325 (534)
Q Consensus       247 ~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~  325 (534)
                      +++++.++..|.++|+++.. ++..+.+.     +.+...+.+.+|.++..|+-+..+|... ++.    + .+.+..+-
T Consensus       114 ~~~N~~iR~lALRtL~~I~~-~~m~~~l~-----~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~  182 (355)
T 3tjz_B          114 TGKEDSYRGPAVRALCQITD-STMLQAIE-----RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQ  182 (355)
T ss_dssp             HSSCHHHHHHHHHHHHHHCC-TTTHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHH
T ss_pred             CCCcHhHHHHHHHHHhcCCC-HHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHH
Confidence            99999999999999999976 34444443     7788889999999999999998888763 342    2 36788899


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC-----CchHHHHHHHHHHhhcCccHHHHHhcC
Q 009471          326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG-----PLPQESAVGALRNLVGSVSQEVLISLG  400 (534)
Q Consensus       326 ~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~-----~~~~~~a~~aL~~La~~~~~~~l~~~~  400 (534)
                      +++.+.++ .++.+|+.+|..+...+...         +..++..+..     +..+...+..+..++..+  +.-....
T Consensus       183 ~ll~d~n~-~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d--~~~~~~~  250 (355)
T 3tjz_B          183 EAASSDNI-MVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE--DGSRDSP  250 (355)
T ss_dssp             HHTTCSSH-HHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred             HHhcCCCc-cHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc--chhhHHH
Confidence            99988876 79999999999999755321         2333433322     222333333333333321  0112345


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHh
Q 009471          401 FFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKR  480 (534)
Q Consensus       401 ~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~  480 (534)
                      +++.+...|++.++.|..+|++++..+...+.  ..+  ..++..|..++.+.++++|..|+..|..++...++   .++
T Consensus       251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---~v~  323 (355)
T 3tjz_B          251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---AVT  323 (355)
T ss_dssp             ------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC---------------
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---HHH
Confidence            67788888899999999999999999865321  111  34577788888889999999999888888754333   333


Q ss_pred             hCCCHHHHHhhcCCCCchhHHHHHHHHHH
Q 009471          481 DDKSVPNLVQLLDPSPQNTAKKYAVACLA  509 (534)
Q Consensus       481 ~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~  509 (534)
                        ..-..+..++.++ +..+..+|+.+|.
T Consensus       324 --~~n~~ie~li~d~-n~sI~t~Aittll  349 (355)
T 3tjz_B          324 --ACNLDLENLVTDA-NRSIATLAITTLL  349 (355)
T ss_dssp             -----------------------------
T ss_pred             --HHHHHHHHHccCC-cHhHHHHHHHHhh
Confidence              2345567777765 3357677766654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.42  E-value=6e-05  Score=82.90  Aligned_cols=296  Identities=17%  Similarity=0.085  Sum_probs=191.7

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--------HHHHHHHHHHHHHhhcCCchhHHHHhc
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--------PRIREKTVTVICSLAESGSCENWLVSE  236 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~v~~~A~~~L~~La~~~~~~~~l~~~  236 (534)
                      ++++..+.-|+.+|.-+-.+...        ..+..|...|.+++        +.++..|+..|+.......+ .     
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e-----  471 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I-----  471 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H-----
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H-----
Confidence            45566677777777666543321        14667777776554        67888899999987543322 2     


Q ss_pred             CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHccCCchHHHHH
Q 009471          237 GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC-QTGDSVSQAAAACTLKNISAVPEVRQML  315 (534)
Q Consensus       237 g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll-~~~~~~~~~~a~~aL~nLa~~~~~~~~i  315 (534)
                      .+++.|..++.+.+..+++.|+.+|..+-....+...+      ..|+..+ .+.+..+++.++.+|..+..+       
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai------~~LL~~~~e~~~e~vrR~aalgLGll~~g-------  538 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI------HDMFTYSQETQHGNITRGLAVGLALINYG-------  538 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH------HHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence            23788889998887777888888888763332222222      4444443 355778888888888877653       


Q ss_pred             HhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-C--CchHHHHHHHHHHhhcCcc
Q 009471          316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAVGALRNLVGSVS  392 (534)
Q Consensus       316 ~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-~--~~~~~~a~~aL~~La~~~~  392 (534)
                       +...++.+++.|....++.+|..++.+++.-..+..+..       .++.|++.+. +  +.+|..|+-+|+.+...+ 
T Consensus       539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-  609 (963)
T 4ady_A          539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-  609 (963)
T ss_dssp             -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-
T ss_pred             -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-
Confidence             234577777887655544778888877775554333322       2666777653 3  568999999999887631 


Q ss_pred             HHHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          393 QEVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       393 ~~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                            ...++.++..+ ++.++.++..|+.+|+.++.+....      ..+..|..+.++.+..||..|..+|..+...
T Consensus       610 ------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          610 ------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             ------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence                  23577777754 6789999999999999998542221      2367888889999999999999999999755


Q ss_pred             Ccch--HHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHHHHhh
Q 009471          472 PQNC--REVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASL  511 (534)
Q Consensus       472 ~~~~--~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L  511 (534)
                      ..|.  ..+.+   ....|....... .+...+..+..+..-+
T Consensus       678 tnna~~~rva~---~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          678 QTEKLNPQVAD---INKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             CCTTTCTTHHH---HHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             CccccchHHHH---HHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            4432  11111   223344444432 2334565555555444

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.31  E-value=0.00066  Score=59.10  Aligned_cols=211  Identities=18%  Similarity=0.282  Sum_probs=154.4

Q ss_pred             cCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHccC-CchHH
Q 009471          236 EGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNISA-VPEVR  312 (534)
Q Consensus       236 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa~-~~~~~  312 (534)
                      ..++..++++|++.-..++.+|...+..++.. ++....+.     ..|+-+++ ++.-........+++.++. .|+. 
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~-  104 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL-  104 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH-
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH-
Confidence            35688999999999999999999999999876 44444443     56666654 4555565667778888775 3332 


Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCc--hHHHHHHHHHHhhcC
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL--PQESAVGALRNLVGS  390 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~--~~~~a~~aL~~La~~  390 (534)
                         + .+.+|.++.=.+-+++ ..+.+...+|..++..++..-..+     +.-+..++.+++  -+-.|+.++..+.. 
T Consensus       105 ---v-~~vVp~lfanyrigd~-kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe-  173 (253)
T 2db0_A          105 ---V-KSMIPVLFANYRIGDE-KTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE-  173 (253)
T ss_dssp             ---H-HHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT-
T ss_pred             ---H-HhhHHHHHHHHhcCCc-cceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc-
Confidence               2 2346777777777876 899999999999999888776544     455777777654  34556666665554 


Q ss_pred             ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                       +....+ ..++|+|+.+|.+++.-|+..|..+|.+++. ++..|+.+.+      -++-+++.+..++....++|..+.
T Consensus       174 -n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          174 -NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             -TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             -cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHH
Confidence             233333 3489999999999999999999999999995 5777777522      344566788899999999998886


Q ss_pred             CC
Q 009471          470 TL  471 (534)
Q Consensus       470 ~~  471 (534)
                      .-
T Consensus       246 l~  247 (253)
T 2db0_A          246 LL  247 (253)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.25  E-value=1.1e-07  Score=80.80  Aligned_cols=120  Identities=18%  Similarity=0.263  Sum_probs=87.8

Q ss_pred             CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009471          195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI  274 (534)
Q Consensus       195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l  274 (534)
                      ...++.++.+|+++++.+|..|+.+|+.+...           .++.|+.+|++.++.++..|+++|.++..        
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            45688888899988889999988888766421           26888999999999999999999988753        


Q ss_pred             HhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471          275 VGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (534)
Q Consensus       275 ~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~  346 (534)
                        ...++.|+.++.++++.+|..++++|.++..          ..+++.|.+++.+.+. .++..++.+|.+
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~-~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG-FARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT-HHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCH-HHHHHHHHHHHh
Confidence              1135888888889999999999999988752          3457888888887776 789888888764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.23  E-value=4.5e-06  Score=79.12  Aligned_cols=183  Identities=8%  Similarity=0.093  Sum_probs=133.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH-HhhcChHhHHHHhc-CCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCC---chh-H
Q 009471          159 LLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMG-RSNIAALVQLL-TATSPRIREKTVTVICSLAESG---SCE-N  231 (534)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~-l~~~~~~~~~~i~~-~g~v~~Lv~lL-~~~~~~v~~~A~~~L~~La~~~---~~~-~  231 (534)
                      +...+++.+...|..|+..|.. ++.+.++....-.+ ...+..|.+.+ ++.+..++..|+.+|+.++..-   ... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3456789999999999999999 88654432100001 13477788888 7889999999999999998522   111 1


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh------hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA------EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~------~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (534)
                      ..  .-+++.++..+++....+++.+..+|..+..+-      .+-..     .++.|+..+++.++.+|..++.+|..+
T Consensus       101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~  173 (249)
T 2qk1_A          101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNAS  173 (249)
T ss_dssp             HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            11  235899999999999999999999888887632      11222     247888889999999999999999888


Q ss_pred             cCCchH--HH--HHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          306 SAVPEV--RQ--MLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       306 a~~~~~--~~--~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      ......  ..  ......+++.+.+++.+.+. ++|..|..++..++.
T Consensus       174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~-~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP-AIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHH
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Confidence            753221  11  12225789999999988876 899999999999884

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.22  E-value=0.00028  Score=71.47  Aligned_cols=314  Identities=15%  Similarity=0.133  Sum_probs=191.9

Q ss_pred             hcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc---hhHHHHhcC--CHHHHHH-HHccCCHHHHHHHHHHHHHhh
Q 009471          193 MGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS---CENWLVSEG--VLPPLIR-LVESGSTVGKEKATISLQRLS  265 (534)
Q Consensus       193 ~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~---~~~~l~~~g--~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls  265 (534)
                      .+..++..++++|+.. +.++.+..+..+..+..+++   .+..++..+  ....+.. .+..++......++.++..++
T Consensus        74 ~~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~  153 (480)
T 1ho8_A           74 VNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV  153 (480)
T ss_dssp             CSSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred             cCchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            3446688999999864 58999999999999988765   443343222  1122222 233334445566666656654


Q ss_pred             cCh----hhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhC--cHHHHHHHhhcC-------
Q 009471          266 MSA----EMARAIVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEG--IVSVMIKLLDCG-------  331 (534)
Q Consensus       266 ~~~----~~~~~l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g--~i~~L~~ll~~~-------  331 (534)
                      ...    +....+...   +.++..+.. ++...+..++.+|..|...++.|..+.+.+  .++.++.++...       
T Consensus       154 ~~~~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~  230 (480)
T 1ho8_A          154 QNGLHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  230 (480)
T ss_dssp             STTTCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             ccCCccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence            221    111222210   135555555 245667789999999999999999987633  467776654311       


Q ss_pred             --------C-ChhHHHHHHHHHHHHccCChHHHHHHHhcCCh--HHHHHhhcC---CchHHHHHHHHHHhhcCc--cHH-
Q 009471          332 --------I-LLGSKEYAAECLQNLTASNENLRRSVVSEGGI--RSLLAYLDG---PLPQESAVGALRNLVGSV--SQE-  394 (534)
Q Consensus       332 --------~-~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l--~~L~~~L~~---~~~~~~a~~aL~~La~~~--~~~-  394 (534)
                              . ...++++++.|++.++.. +...+.+.+.+..  ..|+.+++.   ..+...++.+|.|+....  ... 
T Consensus       231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          231 RIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence                    1 125689999999999984 4455556555533  456666654   457788999999999832  111 


Q ss_pred             ----HHHhcCcHHHHHHHHhcC---CHHHHHHHHH-------HHHHhcCChhHHH----------------HHHhc----
Q 009471          395 ----VLISLGFFPRLVHVLKAG---SLGAQQAAAS-------ALCRVCTSAEMKK----------------LVGEA----  440 (534)
Q Consensus       395 ----~l~~~~~i~~Lv~lL~~~---~~~v~~~A~~-------aL~~la~~~~~~~----------------~i~~~----  440 (534)
                          .++..++ .+++..|...   |+++.+---.       .+..++.-++++.                .++.+    
T Consensus       310 ~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k  388 (480)
T 1ho8_A          310 VIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE  388 (480)
T ss_dssp             HHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred             HHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence                1222334 5566666443   4544332221       1112221122222                22221    


Q ss_pred             ------CchHHHHHhhcC----------CChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHH
Q 009471          441 ------GCTPLLIKLLEA----------KPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYA  504 (534)
Q Consensus       441 ------g~v~~Lv~ll~~----------~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a  504 (534)
                            ..++.|++++.+          .++.+...|+.=+..++.+.++-+.++.+.|+=..+++++.++ ++++|..|
T Consensus       389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~A  467 (480)
T 1ho8_A          389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEA  467 (480)
T ss_dssp             GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHH
T ss_pred             HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHH
Confidence                  267889999973          3577788888889999966666666777777766777888876 56899999


Q ss_pred             HHHHHhhc
Q 009471          505 VACLASLS  512 (534)
Q Consensus       505 ~~~L~~L~  512 (534)
                      +.++..+.
T Consensus       468 L~avQklm  475 (480)
T 1ho8_A          468 LKATQAII  475 (480)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98886653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.22  E-value=1.7e-05  Score=74.68  Aligned_cols=181  Identities=15%  Similarity=0.121  Sum_probs=124.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcC-Cch-hHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471          199 AALVQLLTATSPRIREKTVTVICSLAES-GSC-ENWLVSEGVLPPLIRLVE-SGSTVGKEKATISLQRLSMSAEMARAIV  275 (534)
Q Consensus       199 ~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~-~~~l~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~~~~~~l~  275 (534)
                      +.+.+.+++.+...|..|+..|..+... +.. ...+  ..+++.|...+. +.+..++..|+.++..|+..-...-.-.
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3477788889999999999999999875 221 0011  134778888894 8999999999999999985421100001


Q ss_pred             hCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCC-hHH
Q 009471          276 GHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASN-ENL  354 (534)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~-~~~  354 (534)
                      -...++.++..+.+.++.+|..+..+|.++......      ..+++.+...+.+.++ .++..++..|..+.... +..
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~-~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNP-SVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHcCCCC
Confidence            122468999999999999999999999998875432      2357778888888776 89999999999965432 221


Q ss_pred             -HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          355 -RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       355 -~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                       -...+ ...++.+..++.+  +.+|..|..+++.++.
T Consensus       169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             01111 1345566666644  4566666666666664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.20  E-value=0.00058  Score=75.25  Aligned_cols=288  Identities=16%  Similarity=0.045  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHH
Q 009471          169 EAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT---ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRL  245 (534)
Q Consensus       169 ~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~---~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~l  245 (534)
                      ..+..|+.+|.-+-..+.        .+++..|-+.|.   ++++.++.-|+.+|+.+......  .     ++..|...
T Consensus       373 ~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~-----~~~lL~~~  437 (963)
T 4ady_A          373 WAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D-----TTDYLKNI  437 (963)
T ss_dssp             HHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H-----HHHHHHHH
T ss_pred             HHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H-----HHHHHHHH
Confidence            344555555555544332        145666666665   56789999999999998665432  1     46778888


Q ss_pred             HccCC--------HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471          246 VESGS--------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (534)
Q Consensus       246 L~~~~--------~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (534)
                      |.+.+        +.++..|+-.|.-......+...      ++.|..++.+.+...+..++.+|..+-.+..+.     
T Consensus       438 L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev------~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-----  506 (963)
T 4ady_A          438 IVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEV------YEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-----  506 (963)
T ss_dssp             HHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHH------HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----
T ss_pred             HcCccccccccccHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----
Confidence            87655        56777788888876443322222      366788887777777777777777654333222     


Q ss_pred             hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc---CCchHHHHHHHHHHhhc-CccH
Q 009471          318 EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD---GPLPQESAVGALRNLVG-SVSQ  393 (534)
Q Consensus       318 ~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~---~~~~~~~a~~aL~~La~-~~~~  393 (534)
                       .++..|++.+.+.....++..++.+|+.+..+.+..         ++.+++.|.   +|.+|..++.+++.-.. ..+.
T Consensus       507 -~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          507 -EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             -HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             -HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence             234556665544444478999999999988766643         556666653   36678888888876554 3332


Q ss_pred             HHHHhcCcHHHHHHHH-hcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHh-hcCCChHHHHHHHHHHHHhcCC
Q 009471          394 EVLISLGFFPRLVHVL-KAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKL-LEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       394 ~~l~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      .      .+..|++.+ .+.+..+++.|+.+|+.+....        ...++.++++ .++.++.+|..|..+|..+...
T Consensus       577 ~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aG  642 (963)
T 4ady_A          577 S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAG  642 (963)
T ss_dssp             H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred             H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence            2      356666665 4557899999999999987442        1346666664 4578999999999999999755


Q ss_pred             CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          472 PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       472 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .++.       ..+..|..++++. +..++..|+.+|..+...
T Consensus       643 n~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          643 KGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             SCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTT
T ss_pred             CCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcC
Confidence            4442       2345566666655 457999999999988764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.18  E-value=3.9e-05  Score=75.92  Aligned_cols=275  Identities=14%  Similarity=0.054  Sum_probs=154.7

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ......+..+++.|.+.|+-.--.+..++...++.   +   =.+..+.+=++++++-+|-.|+++|+++...+- -+. 
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~~-  139 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQA-  139 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HHH-
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HHH-
Confidence            44566677888999999888888888877653322   1   247888888999999999999999999976652 222 


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ  313 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~  313 (534)
                          +.+.+.+.|.+.++.++..|+.+..+|....+.   ++ .+.+..+-+++.+.++.++.+|..+|..+...+.   
T Consensus       140 ----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---  208 (355)
T 3tjz_B          140 ----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---  208 (355)
T ss_dssp             ----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred             ----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence                367788888899999999999999998765322   12 2577889999999999999999999999987431   


Q ss_pred             HHHhhCcHHHHHHHhhcCC--ChhHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhh
Q 009471          314 MLAEEGIVSVMIKLLDCGI--LLGSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLV  388 (534)
Q Consensus       314 ~i~e~g~i~~L~~ll~~~~--~~~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La  388 (534)
                           ..+..++.-+..+.  .+-.+..-+..+..++..+ +..     ....++.+..++++  +.+.-.|+.++..+.
T Consensus       209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~  278 (355)
T 3tjz_B          209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLP  278 (355)
T ss_dssp             -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--
T ss_pred             -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence                 13444455554432  1122333333333444333 121     23345666666765  557788888888875


Q ss_pred             cCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHH
Q 009471          389 GSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI  465 (534)
Q Consensus       389 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL  465 (534)
                      ..  ..... ...+..|..++.+.++.+|..|+..|..+... |+.   +  ..+-..+.+++.+++..+...|.-.|
T Consensus       279 ~~--~~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~---v--~~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          279 GC--SAKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA---V--TACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             ------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred             CC--CHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH---H--HHHHHHHHHHccCCcHhHHHHHHHHh
Confidence            51  11121 23466777888899999999999999998853 322   2  12355667788888777766665444

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.14  E-value=1.8e-05  Score=71.72  Aligned_cols=184  Identities=14%  Similarity=0.114  Sum_probs=136.0

Q ss_pred             ChHHHHHHHccCChHHHHHHHHHHHHccCC-chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHH
Q 009471          279 GVRPLIEICQTGDSVSQAAAACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS  357 (534)
Q Consensus       279 ~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~  357 (534)
                      .+..|..++.+.|+.++..++.+|..+-.. ++......-+..++.++.++.+.+. .+...|+.||..+-.+.+-....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dE-kval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENE-KVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHcCCCCCHHH
Confidence            457889999999999999999999998764 2333333335679999999988886 89999999999998864432222


Q ss_pred             HHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHH
Q 009471          358 VVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK  435 (534)
Q Consensus       358 i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~  435 (534)
                      +.+  ....+..++.+  +-.++.+...++.+-....     ..+++..+..++.+.++.++..+..++.+++...+...
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-----~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~  185 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-----SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG  185 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-----hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence            221  24556666654  3468899999999833211     13467889999999999999999999999996422111


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCC
Q 009471          436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLP  472 (534)
Q Consensus       436 ~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~  472 (534)
                      .+  .+.+..+-.+++++++.+++.|..+|-.+.+.+
T Consensus       186 i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          186 HL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            11  234556678899999999999999999998663

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.11  E-value=2.8e-07  Score=78.24  Aligned_cols=119  Identities=17%  Similarity=0.189  Sum_probs=91.2

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .++.++..|++.++..|..|+..|..+-.            ..++.|+.+|+++++.+|..|+++|+++...        
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~--------   72 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE--------   72 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH--------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH--------
Confidence            46677778888888888888877765421            2379999999999999999999999988631        


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (534)
                        ..++.|+..|++.++.++..|+++|.++..          ...++.|+.+++++++.++..++.+|.++
T Consensus        73 --~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 --RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence              248999999999999999999999999863          12358899999999999999999998764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.07  E-value=0.00059  Score=59.40  Aligned_cols=211  Identities=17%  Similarity=0.170  Sum_probs=145.6

Q ss_pred             CCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH
Q 009471          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR  355 (534)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~  355 (534)
                      ...+..++++|.+.-|.++.+|...+.+++. .++....+     +..|+-+++....-........+++.++.-.++.-
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            4456889999999999999999999999987 34444333     55577776554432455667788999887666543


Q ss_pred             HHHHhcCChHHHHHhh--cCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhH
Q 009471          356 RSVVSEGGIRSLLAYL--DGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEM  433 (534)
Q Consensus       356 ~~i~~~g~l~~L~~~L--~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~  433 (534)
                      ..     ++|.++.-.  .++..+.+..++|..++.. +++.  -.+++.-+..++.+++..-+-.|+..+..+..+  +
T Consensus       106 ~~-----vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~  175 (253)
T 2db0_A          106 KS-----MIPVLFANYRIGDEKTKINVSYALEEIAKA-NPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--S  175 (253)
T ss_dssp             HH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--T
T ss_pred             Hh-----hHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--C
Confidence            32     245555433  3477899999999999972 1111  234678888899999987777787777777643  3


Q ss_pred             HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhh
Q 009471          434 KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASL  511 (534)
Q Consensus       434 ~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L  511 (534)
                      -+++  ..++|.|..++++++.-+|..|.++|.+++...+..+.++.     .. ++-++.. ++.+++.....|..+
T Consensus       176 ~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~-----~k-l~e~~D~-S~lv~~~V~egL~rl  244 (253)
T 2db0_A          176 FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI-----KR-LEELNDT-SSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH-----HH-HHHCCCS-CHHHHHHHHHHHHHH
T ss_pred             cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH-----HH-HHHhcCc-HHHHHHHHHHHHHHH
Confidence            4454  56799999999999999999999999999977665554443     22 3334443 234555554555444

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.05  E-value=0.00018  Score=69.48  Aligned_cols=176  Identities=15%  Similarity=0.115  Sum_probs=133.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH-
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV-  234 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~-  234 (534)
                      +..++..|++++.+.++.++..|..+..++......++..+|+..|+....+.+...+..+++++.+|-.+.....-++ 
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            6778888899999999999999999887888899999999999999999999999999999999999988766554454 


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh-hHHHHHh-------CC---ChHHHHHHHc---cCChHHHHHHHH
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE-MARAIVG-------HG---GVRPLIEICQ---TGDSVSQAAAAC  300 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~-------~g---~i~~Lv~ll~---~~~~~~~~~a~~  300 (534)
                      ....|.-+..++.+.+..+...|...|..+...++ +...+.+       ..   -...|+.+++   ..|.+++.++..
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            44578888899998888999999999999977654 3322211       12   2778999997   678999988877


Q ss_pred             HHHHccC-Cc--hHHHHHH----hhCcHHHHHHHhhcC
Q 009471          301 TLKNISA-VP--EVRQMLA----EEGIVSVMIKLLDCG  331 (534)
Q Consensus       301 aL~nLa~-~~--~~~~~i~----e~g~i~~L~~ll~~~  331 (534)
                      .+-.+-. .+  +.+..+.    +.|.-..+...+...
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            6654433 12  3233333    244444555555443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.71  E-value=0.00098  Score=64.30  Aligned_cols=176  Identities=14%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             HHHHHccCChHHHHHHHHHHHH-ccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhc
Q 009471          283 LIEICQTGDSVSQAAAACTLKN-ISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSE  361 (534)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~n-La~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~  361 (534)
                      +++-|.+++...+..++.-|.. +..+.+....|++.+++.+|+.+...++. ..+..++.++.++....+.....+-+.
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g-N~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH-NYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh-HHHHHHHHHHHHHHhccccccchhCCH
Confidence            3444556667777788888888 66777999999999999999999998876 899999999999998544433333366


Q ss_pred             CChHHHHHhhcC--CchHHHHHHHHHHhhc-Cc-cHHHHHh----------cCcHHHHHHHHh---cCCHHHHHHHHHHH
Q 009471          362 GGIRSLLAYLDG--PLPQESAVGALRNLVG-SV-SQEVLIS----------LGFFPRLVHVLK---AGSLGAQQAAASAL  424 (534)
Q Consensus       362 g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~-~~~~l~~----------~~~i~~Lv~lL~---~~~~~v~~~A~~aL  424 (534)
                      ..|..+..++.+  ..+...|+..|..++. .+ +...+.+          ......|+.+|+   +.+.+++..|...|
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI  281 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI  281 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            678888888876  4567889999999987 32 3332221          123788999997   77899999998877


Q ss_pred             HHhcCC---hh----HHHHHHhcCchHHHHHhhcCC--ChHHHH
Q 009471          425 CRVCTS---AE----MKKLVGEAGCTPLLIKLLEAK--PNSVRE  459 (534)
Q Consensus       425 ~~la~~---~~----~~~~i~~~g~v~~Lv~ll~~~--~~~v~~  459 (534)
                      ..+-..   .+    ....+.+.|.-..+.+.+...  +++.++
T Consensus       282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            776532   23    233444455445666666644  445443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00023  Score=67.23  Aligned_cols=149  Identities=7%  Similarity=-0.012  Sum_probs=110.3

Q ss_pred             hchHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcCh--HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-
Q 009471          153 HGNTRELLARL-QIGHLEAKHKALDSLVEAMKEDE--KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-  228 (534)
Q Consensus       153 ~~~i~~Ll~~L-~~~~~~~~~~A~~~L~~l~~~~~--~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-  228 (534)
                      ...+..+...+ +..+...+..|+.++..++.+-.  ....... .-.++.++..+++..+.+++.+..++..++..-+ 
T Consensus        59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~  137 (249)
T 2qk1_A           59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP  137 (249)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc
Confidence            34577777888 67889999999999999985322  2110111 1368899999999889999999999988887431 


Q ss_pred             -----hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh--HH--HHHhCCChHHHHHHHccCChHHHHHHH
Q 009471          229 -----CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM--AR--AIVGHGGVRPLIEICQTGDSVSQAAAA  299 (534)
Q Consensus       229 -----~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~--~l~~~g~i~~Lv~ll~~~~~~~~~~a~  299 (534)
                           +-..     +++.|+..|++.++.+++.++.+|..+......  ..  .......++.|..++.+.++.+|..|.
T Consensus       138 ~~~~~~l~~-----ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~  212 (249)
T 2qk1_A          138 LASSGRNED-----MLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF  212 (249)
T ss_dssp             TCTTCTTHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             cccCCcHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                 1222     478888899999999999999999998754321  11  111246679999999999999999999


Q ss_pred             HHHHHccC
Q 009471          300 CTLKNISA  307 (534)
Q Consensus       300 ~aL~nLa~  307 (534)
                      .++..++.
T Consensus       213 ~~l~~i~~  220 (249)
T 2qk1_A          213 ESFAILIK  220 (249)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.59  E-value=0.009  Score=66.58  Aligned_cols=288  Identities=15%  Similarity=0.151  Sum_probs=186.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh---HH-HHHh
Q 009471          201 LVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM---AR-AIVG  276 (534)
Q Consensus       201 Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~---~~-~l~~  276 (534)
                      +++-+...+..-+..++..+..+......- ..+..+++..+.+.+.+....  +.|+.++..|+.....   .+ .++ 
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~-   94 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV-   94 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence            333344433333455556666665433110 111125677777777765333  8999999999854322   22 232 


Q ss_pred             CCChHHHHHHHccCChHHHHHHHHHHHHccC--CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHH
Q 009471          277 HGGVRPLIEICQTGDSVSQAAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENL  354 (534)
Q Consensus       277 ~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~--~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~  354 (534)
                       +.++.++..+.+....++..|-.++..+..  +++..     ..++|.++..+.+......+..|+.++..++...+..
T Consensus        95 -~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           95 -QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             -TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             -HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence             568888888888889999877776666554  23322     3458889998876643478999999999999644321


Q ss_pred             HHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-
Q 009471          355 RRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-  430 (534)
Q Consensus       355 ~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-  430 (534)
                       -...=...+|.+...+.+  +++...|..++..+|. -.+.+   -..++|.|++.+.+++. |.    .++..|+.. 
T Consensus       169 -~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~-~~----~~~~~l~~~t  239 (986)
T 2iw3_A          169 -VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTE-VP----ETVHLLGATT  239 (986)
T ss_dssp             -HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTH-HH----HHHHHHTTCC
T ss_pred             -HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhh-hH----HHHHHhhcCe
Confidence             122224567888887766  7899999999999997 23321   14589999999988754 22    234555432 


Q ss_pred             ---hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHH
Q 009471          431 ---AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYA  504 (534)
Q Consensus       431 ---~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a  504 (534)
                         .-....+  +=.+|.|.+-|......++..++.++-||+....+   ...|+-  ..+|-|-...+.-..+++|..+
T Consensus       240 fv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~~~~~pe~r~~~  315 (986)
T 2iw3_A          240 FVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFATIADPEAREVT  315 (986)
T ss_dssp             CCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTTTCCSHHHHHHH
T ss_pred             eEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhhccCCHHHHHHH
Confidence               1112222  12388888889888888999999999999855444   344543  6677777777665556788888


Q ss_pred             HHHHHhh
Q 009471          505 VACLASL  511 (534)
Q Consensus       505 ~~~L~~L  511 (534)
                      ..++-.|
T Consensus       316 ~~a~~~l  322 (986)
T 2iw3_A          316 LRALKTL  322 (986)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777666

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.38  E-value=0.011  Score=67.06  Aligned_cols=330  Identities=9%  Similarity=0.066  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-----CCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHH-
Q 009471          170 AKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-----ATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI-  243 (534)
Q Consensus       170 ~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-----~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv-  243 (534)
                      .+..++..|..+....++....... ..++..++.+.     ..+..++..++..+..++..+..+..+.....++.++ 
T Consensus       262 vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~  340 (960)
T 1wa5_C          262 VKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE  340 (960)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence            4677888888887655543332222 44566666664     2357899999999999887654333321112333333 


Q ss_pred             ----HHHc----c-----CC--------------HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHc------cC
Q 009471          244 ----RLVE----S-----GS--------------TVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQ------TG  290 (534)
Q Consensus       244 ----~lL~----~-----~~--------------~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~------~~  290 (534)
                          ..+.    +     .+              ...+..|..+|..++....  ..+. ...++.+...+.      +.
T Consensus       341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~~~  417 (960)
T 1wa5_C          341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDPSK  417 (960)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC----
T ss_pred             HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCcch
Confidence                3331    1     01              1356677777777765433  1111 001233334444      56


Q ss_pred             ChHHHHHHHHHHHHccCCchHHHHHHhh-----CcHH----HHHHHhhcC--CChhHHHHHHHHHHHHccCChHHHHHHH
Q 009471          291 DSVSQAAAACTLKNISAVPEVRQMLAEE-----GIVS----VMIKLLDCG--ILLGSKEYAAECLQNLTASNENLRRSVV  359 (534)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~~~~~~~i~e~-----g~i~----~L~~ll~~~--~~~~v~~~a~~~L~~La~~~~~~~~~i~  359 (534)
                      ++..+..|+.++..++.+...+..-...     ...+    .++..+.+.  ....+|..++++++.++..-.   .. .
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~-~  493 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KA-Q  493 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HH-H
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HH-H
Confidence            7889999999999997531101000000     1222    233444555  133789999999999987421   11 1


Q ss_pred             hcCChHHHHHhhcC--CchHHHHHHHHHHhhcC-c---------cHHHHHh--cCcHHHHHHHHhcCC---HH--HHHHH
Q 009471          360 SEGGIRSLLAYLDG--PLPQESAVGALRNLVGS-V---------SQEVLIS--LGFFPRLVHVLKAGS---LG--AQQAA  420 (534)
Q Consensus       360 ~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~-~---------~~~~l~~--~~~i~~Lv~lL~~~~---~~--v~~~A  420 (534)
                      -...++.+++.|.+  +.++..|+.+|.+++.. .         ....+..  ..++..|+.+++...   +.  ....+
T Consensus       494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l  573 (960)
T 1wa5_C          494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL  573 (960)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence            23346777777766  44799999999999872 1         1222211  234666666776641   11  23455


Q ss_pred             HHHHHHhcCC--hhHHHHHHhcCchHHHHHhhc-----CCChHHHHHHHHHHHHhcCC--CcchHHHHhhCCCHHHHHhh
Q 009471          421 ASALCRVCTS--AEMKKLVGEAGCTPLLIKLLE-----AKPNSVREVAAQAISSLVTL--PQNCREVKRDDKSVPNLVQL  491 (534)
Q Consensus       421 ~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~-----~~~~~v~~~A~~aL~~L~~~--~~~~~~~~~~~~~v~~Lv~l  491 (534)
                      ..+|..++..  ++...++  ...++.|+..+.     ..++..+....++|..++..  +.....+..  ..++.+...
T Consensus       574 ~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~~~p~~~~i  649 (960)
T 1wa5_C          574 MRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--SMMPTFLTV  649 (960)
T ss_dssp             HHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--HHHHHHHHH
Confidence            5666555421  2222221  113444544443     23566777889999988854  233344433  566777777


Q ss_pred             cCCCCchhHHHHHHHHHHhhc
Q 009471          492 LDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       492 L~~~~~~~~k~~a~~~L~~L~  512 (534)
                      |+.+. .+...++..++..+.
T Consensus       650 L~~~~-~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          650 FSEDI-QEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHTTC-TTTHHHHHHHHHHHH
T ss_pred             HHhhh-HhhHHHHHHHHHHHH
Confidence            77652 245566665555554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.34  E-value=0.027  Score=63.78  Aligned_cols=245  Identities=13%  Similarity=0.105  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc------CCCHHHHHHHHHHHHHhhcCCchhHHHHhc-----CCH
Q 009471          171 KHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT------ATSPRIREKTVTVICSLAESGSCENWLVSE-----GVL  239 (534)
Q Consensus       171 ~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~------~~~~~v~~~A~~~L~~La~~~~~~~~l~~~-----g~i  239 (534)
                      |..|...|..++...++.   +.. -.++.+.+.+.      +++...++.|+.+++.++........-...     ...
T Consensus       378 R~aa~~~L~~l~~~~~~~---v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~  453 (960)
T 1wa5_C          378 RRACTDFLKELKEKNEVL---VTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV  453 (960)
T ss_dssp             HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred             HHHHHHHHHHHHHHcchh---HHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence            445555566666544321   111 12334444454      456889999999999998642111000000     122


Q ss_pred             H----HHHHHHccC---CHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-
Q 009471          240 P----PLIRLVESG---STVGKEKATISLQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-  309 (534)
Q Consensus       240 ~----~Lv~lL~~~---~~~~~~~A~~~L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-  309 (534)
                      +    .++..+.+.   ++.+|..|++++..++..  ++...     ..++.++..+.++++.++.+|+.+|.+++... 
T Consensus       454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            2    233445666   889999999999999864  22222     23478888888888999999999999988731 


Q ss_pred             -------h-HHHHHHh--hCcHHHHHHHhhcCC--Ch--hHHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhh---
Q 009471          310 -------E-VRQMLAE--EGIVSVMIKLLDCGI--LL--GSKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYL---  371 (534)
Q Consensus       310 -------~-~~~~i~e--~g~i~~L~~ll~~~~--~~--~v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L---  371 (534)
                             + .+..+..  ..+++.|+.++....  +.  ...+.+..+|..++... +.....  -...++.|...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~--~~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL--FPQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG--HHHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHH
Confidence                   1 1222322  446677777776641  00  12345666666654311 111100  011233344433   


Q ss_pred             -cCC---chHHHHHHHHHHhhcC--ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009471          372 -DGP---LPQESAVGALRNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCR  426 (534)
Q Consensus       372 -~~~---~~~~~a~~aL~~La~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~  426 (534)
                       +++   ..+..++.+|+.++..  .....-.+..+++.+...|+....+....+..++..
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~  667 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF  667 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence             332   3445577777777763  112223345567777777766544444444444433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.29  E-value=0.0053  Score=57.83  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=123.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc----CCCHHHHHHHHHHHHHhhc----CCc
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT----ATSPRIREKTVTVICSLAE----SGS  228 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~v~~~A~~~L~~La~----~~~  228 (534)
                      +++...|.+.|...+.+|++.|.+.+..+++....     .++.+++.+.    +++..+...++.+|..+..    .+.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~-----~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS-----NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH-----THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            45667778889999999999999988766643322     2344444433    6788888888888887642    221


Q ss_pred             -hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                       ..+.- ..-.+|.|+.-+.+....+++.+-.++..+..-.+....      .+.++.-+++.++..+..++..+.++-.
T Consensus       124 ~~~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v------~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKM------TPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH------HHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence             11110 123589999999999999999988888777643222222      2677788889999999999988888765


Q ss_pred             CchHHHHHHhhCcH---HHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          308 VPEVRQMLAEEGIV---SVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       308 ~~~~~~~i~e~g~i---~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      ..+..    -..++   +.+.+++.+.+. .+|..|+.++..+-.
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~d~-~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDKDV-NVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCSSH-HHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCCCH-HHHHHHHHHHHHHHH
Confidence            32221    24467   999999998887 899999999887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.12  E-value=0.0012  Score=67.48  Aligned_cols=235  Identities=12%  Similarity=0.117  Sum_probs=153.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc---hhHHHHhcCCHHHHHHHHc------------c-CCHHHHHHHHHHH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPPLIRLVE------------S-GSTVGKEKATISL  261 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~Lv~lL~------------~-~~~~~~~~A~~~L  261 (534)
                      .+.|+.-|=++..++|.-|+.+|+.+.....   .+.  ...+- ...++++.            + .-..+|+.++++|
T Consensus       176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL  252 (800)
T 3oc3_A          176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--IRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL  252 (800)
T ss_dssp             THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--CCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--ccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence            4556655667889999999999999865432   111  11111 34444431            1 2446999999999


Q ss_pred             HHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHH
Q 009471          262 QRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAA  341 (534)
Q Consensus       262 ~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~  341 (534)
                      ..+ .+-+..     ..++..|+..+..+.|+++..++-.|..+.   +....  -.++++.++.-|.+.++ +|+..|+
T Consensus       253 GaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DD-DVRAVAA  320 (800)
T 3oc3_A          253 SRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDE-DIKLLSA  320 (800)
T ss_dssp             HHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSH-HHHHHHH
T ss_pred             HHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCccc-HHHHHHH
Confidence            999 552222     344555666667889999999999999981   11111  25668888888888876 8999999


Q ss_pred             HHHHHHccCChHHHHHHHhcCChHHHHHhhc---C-CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHH
Q 009471          342 ECLQNLTASNENLRRSVVSEGGIRSLLAYLD---G-PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGA  416 (534)
Q Consensus       342 ~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~---~-~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v  416 (534)
                      .+|.-++. .+.. ..     .+..+...|.   + .......+..|..|+. +..  .......+|+|..++++.-+.|
T Consensus       321 etLiPIA~-p~~l-~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          321 ELLCHFPI-TDSL-DL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHHTTSCC-SSTH-HH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHH
T ss_pred             HHhhhhcc-hhhH-HH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHH
Confidence            99999992 2111 11     1333444443   2 3346677778888887 321  1112478999999999999999


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHhcCchHHH-HHhhcCCChHHHHHHHHHHH
Q 009471          417 QQAAASALCRVCTSAEMKKLVGEAGCTPLL-IKLLEAKPNSVREVAAQAIS  466 (534)
Q Consensus       417 ~~~A~~aL~~la~~~~~~~~i~~~g~v~~L-v~ll~~~~~~v~~~A~~aL~  466 (534)
                      |..++.++..+. ..+         +++.+ .+++-..+++++..+..+-.
T Consensus       392 R~AVL~TL~tfL-~~~---------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          392 RTSILNMVKNLS-EES---------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHTTTCC-CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999998887 222         22222 23344677888888777653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0065  Score=58.11  Aligned_cols=183  Identities=15%  Similarity=0.128  Sum_probs=122.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhcChHhHH--HHh-cC-CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hh
Q 009471          159 LLARLQIGHLEAKHKALDSLVEAMKEDEKNVL--AVM-GR-SNIAALVQLLTATSPRIREKTVTVICSLAESGS----CE  230 (534)
Q Consensus       159 Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~--~i~-~~-g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~----~~  230 (534)
                      +-.+|.+.+...|.+|+..|..++...+....  ... .- ...+.+-..+.+.+..++..++.++..++....    .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            55788999999999999999998865442211  111 11 335666678889999999999999999876431    11


Q ss_pred             --HHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          231 --NWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       231 --~~l~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                        ....-..+++.|+. .+.+....++..+..++..+.........+     ++.++..+.+.+|.++..++..|.++..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence              12222345677765 477788888988888887776433222222     2566677888999999988888877653


Q ss_pred             C--c---hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          308 V--P---EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       308 ~--~---~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      .  .   ..+..+  ..+++.+..++.+.+. .||..|..++..+-.
T Consensus       169 ~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~-~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          169 AFGLTNVNVQTFL--PELLKHVPQLAGHGDR-NVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHTTTTCCHHHHH--HHHGGGHHHHHTCSSH-HHHHHHHHHHHHHHT
T ss_pred             HhCCCcCCchhHH--HHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHH
Confidence            1  1   111111  2345566777788776 899999999988865

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.78  E-value=0.066  Score=60.65  Aligned_cols=210  Identities=14%  Similarity=0.062  Sum_probs=120.8

Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH---c--cCCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChH
Q 009471          208 TSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---E--SGSTVGKEKATISLQRLSMSAE-MARAIVGHGGVR  281 (534)
Q Consensus       208 ~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~--~~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~  281 (534)
                      .+...++.++.+++.+++......    ...++.++.++   .  +.++.++..+++++..++..-. +...+  ...++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            467889999999999987543111    12344444433   2  3478899999999999875311 11111  12246


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCC-ChhHHHHHHHHHHHHccCCh-HHHHH
Q 009471          282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS  357 (534)
Q Consensus       282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~  357 (534)
                      .|+..+ +  +.++..|+.++.+++.  +.+..+..  ..++..+.+++..+. +...+..+..+++.++...+ .....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            666666 3  7789999999999995  23333332  456677777777643 23678889999999876321 22212


Q ss_pred             HHhcCChHHHHHh----hcCC----chHHHHHHHHHHhhc-----Ccc----------HH--HHHhcCcHHHHHHHHhc-
Q 009471          358 VVSEGGIRSLLAY----LDGP----LPQESAVGALRNLVG-----SVS----------QE--VLISLGFFPRLVHVLKA-  411 (534)
Q Consensus       358 i~~~g~l~~L~~~----L~~~----~~~~~a~~aL~~La~-----~~~----------~~--~l~~~~~i~~Lv~lL~~-  411 (534)
                      .+. ..++.+++.    ++++    +.+......+..|+.     ...          ..  .-....+++.+..++.. 
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~  703 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW  703 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc
Confidence            211 223334433    2322    123333444444432     110          00  11224567777777754 


Q ss_pred             -CCHHHHHHHHHHHHHhcC
Q 009471          412 -GSLGAQQAAASALCRVCT  429 (534)
Q Consensus       412 -~~~~v~~~A~~aL~~la~  429 (534)
                       .+..+.+.+++++.+++.
T Consensus       704 ~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          704 VEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence             367999999999999874

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.71  E-value=0.039  Score=50.85  Aligned_cols=141  Identities=19%  Similarity=0.263  Sum_probs=108.0

Q ss_pred             HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCCc--hhHHHHhcCCHHHHHHHHccC
Q 009471          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS-----PRIREKTVTVICSLAESGS--CENWLVSEGVLPPLIRLVESG  249 (534)
Q Consensus       177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~-----~~v~~~A~~~L~~La~~~~--~~~~l~~~g~i~~Lv~lL~~~  249 (534)
                      +|.+-...+++.+..+++....-.|-.+|+..+     ..+|-.++.+++.+...++  ....+.+.+++|..++.++.+
T Consensus        78 aLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G  157 (268)
T 2fv2_A           78 ALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG  157 (268)
T ss_dssp             HHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence            344444457788889999888777888887654     5789999999999987654  667777899999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcChhhHHHHHh--------CCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHh
Q 009471          250 STVGKEKATISLQRLSMSAEMARAIVG--------HGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAE  317 (534)
Q Consensus       250 ~~~~~~~A~~~L~~Ls~~~~~~~~l~~--------~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e  317 (534)
                      +.-.+..|.-++.++-.++..-..+++        ...+..++ .+..++++...++..++-..|+.++..+..+..
T Consensus       158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~  234 (268)
T 2fv2_A          158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ  234 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999998877766544443        11122222 233567888889999999999999988887764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.68  E-value=0.5  Score=53.37  Aligned_cols=301  Identities=10%  Similarity=0.043  Sum_probs=160.9

Q ss_pred             CcHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcC---------Cc-hhHHHHh--cCCHHHHHHHHccC--------C
Q 009471          196 SNIAALVQLLTA-----TSPRIREKTVTVICSLAES---------GS-CENWLVS--EGVLPPLIRLVESG--------S  250 (534)
Q Consensus       196 g~v~~Lv~lL~~-----~~~~v~~~A~~~L~~La~~---------~~-~~~~l~~--~g~i~~Lv~lL~~~--------~  250 (534)
                      ..++.++.+..+     .++++...++..+..++..         .. .+..+..  ..+++.++..+.-+        +
T Consensus       348 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d  427 (971)
T 2x1g_F          348 RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWS  427 (971)
T ss_dssp             HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSC
T ss_pred             HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccC
Confidence            345566665544     3678888998888777651         11 1111110  13444444444211        1


Q ss_pred             H-------HHHHHHHHHHHHhhcChh--hHHHHHhCCChHHHHHHHcc-----CChHHHHHHHHHHHHccCCchHHHHHH
Q 009471          251 T-------VGKEKATISLQRLSMSAE--MARAIVGHGGVRPLIEICQT-----GDSVSQAAAACTLKNISAVPEVRQMLA  316 (534)
Q Consensus       251 ~-------~~~~~A~~~L~~Ls~~~~--~~~~l~~~g~i~~Lv~ll~~-----~~~~~~~~a~~aL~nLa~~~~~~~~i~  316 (534)
                      +       ..|..+..+|..++....  .-..+.     +.+-..+..     .++..+..++.++..++.......   
T Consensus       428 ~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~-----~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~---  499 (971)
T 2x1g_F          428 SDDLECFRCYRQDISDTFMYCYDVLNDYILEILA-----AMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE---  499 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH-----HHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh---
Confidence            1       244556666766654322  111111     223333333     678899999999999987542111   


Q ss_pred             hhCcHHHHHHHh---h--cCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCc
Q 009471          317 EEGIVSVMIKLL---D--CGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSV  391 (534)
Q Consensus       317 e~g~i~~L~~ll---~--~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~  391 (534)
                       ...++.+++++   .  +.++ .++..++++++.++..-....+  .-...++.++..++ +.++..|+.++.+|+.. 
T Consensus       500 -~~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~-  573 (971)
T 2x1g_F          500 -KRQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPA--YIPPAINLLVRGLN-SSMSAQATLGLKELCRD-  573 (971)
T ss_dssp             --CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHH-
T ss_pred             -hHHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH-
Confidence             12334444433   2  2243 7899999999998852111110  11123555666664 88999999999999962 


Q ss_pred             cHHHHHh--cCcHHHHHHHHhcC--CHHHHHHHHHHHHHhcCC---hhHHHHHHhcCchHHHHHh----hcCC--ChHHH
Q 009471          392 SQEVLIS--LGFFPRLVHVLKAG--SLGAQQAAASALCRVCTS---AEMKKLVGEAGCTPLLIKL----LEAK--PNSVR  458 (534)
Q Consensus       392 ~~~~l~~--~~~i~~Lv~lL~~~--~~~v~~~A~~aL~~la~~---~~~~~~i~~~g~v~~Lv~l----l~~~--~~~v~  458 (534)
                      +...+..  ..++..+..++..+  +...+..+..++..++..   .+...++  ...++++++.    ++..  +++.+
T Consensus       574 ~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~  651 (971)
T 2x1g_F          574 CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL--DIIVSPCFEELQAICQADSKTPAAR  651 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH--HHHHHHHHHHHHHHHTC---CHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHhcCCCChhhH
Confidence            2233322  34566777777763  578888888888888743   2333333  2234444443    3332  33333


Q ss_pred             HHHHHHHHHhc---CC--C------------cchHHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471          459 EVAAQAISSLV---TL--P------------QNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       459 ~~A~~aL~~L~---~~--~------------~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L~~~  514 (534)
                      .....++..|+   ..  .            .....+..  ..++.+.++++.. .+..+...+..++.+++..
T Consensus       652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~  723 (971)
T 2x1g_F          652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN  723 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence            33333333332   21  0            11122332  5677777777543 2346888888888887654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.64  E-value=0.079  Score=51.00  Aligned_cols=212  Identities=13%  Similarity=0.112  Sum_probs=154.4

Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH----HHHH-hcCChHHHHHhhcCCchHHHHHHHHHHh
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR----RSVV-SEGGIRSLLAYLDGPLPQESAVGALRNL  387 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~----~~i~-~~g~l~~L~~~L~~~~~~~~a~~aL~~L  387 (534)
                      ..+...+.+..|+..+..=+. +.+..+..+..++-......+    ..+. +...+..|+..-+++++--.+-..|+.+
T Consensus        72 ~ei~~~dll~~Li~~l~~L~f-E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDF-EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH-HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCc-hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            455667888888888877776 789999998888887443221    2222 2334555555556688888999999999


Q ss_pred             hc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcC---chHHHHHhhcCCChHHHHHHH
Q 009471          388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREVAA  462 (534)
Q Consensus       388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g---~v~~Lv~ll~~~~~~v~~~A~  462 (534)
                      .. +.....++..+.+..+++.++.++-++..-|..++..+- ++......+....   +....-+++.+++--++..+.
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            98 455566777788889999999999999999999888865 5544444444433   677888899999999999999


Q ss_pred             HHHHHhcCCCcchHH---HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhcc
Q 009471          463 QAISSLVTLPQNCRE---VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERGR  526 (534)
Q Consensus       463 ~aL~~L~~~~~~~~~---~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~  526 (534)
                      ..|..|..+..|...   ++.+...+..++.+|.+. ...++..|..++--...+   ++.+.+.|.+||
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr  299 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ  299 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHH
Confidence            999999999888754   455566777788888876 446777777665444433   566666665443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.60  E-value=0.39  Score=54.10  Aligned_cols=212  Identities=17%  Similarity=0.144  Sum_probs=124.5

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHH---ccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChH
Q 009471          206 TATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLV---ESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVR  281 (534)
Q Consensus       206 ~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~  281 (534)
                      .+.+...++.++.+++.+++.-...    ....++.++..+   .++++.++..+++++..++..- ++.. +. ...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHH
Confidence            4567889999999999998764310    012234444443   2357789999999999987531 1222 21 56778


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhcCC-ChhHHHHHHHHHHHHccCCh-HHHHH
Q 009471          282 PLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDCGI-LLGSKEYAAECLQNLTASNE-NLRRS  357 (534)
Q Consensus       282 ~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~~~-~~~v~~~a~~~L~~La~~~~-~~~~~  357 (534)
                      .++..+.+  +.++..|+.++.+++..  .+..+..  ..++..+..++..++ ....+.....+++.++...+ .....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            88888854  88999999999999852  2222221  344555666666533 33678889999999886432 32222


Q ss_pred             HHhcCChHHHHHhhc----C---CchHH---HHHHHHHHhhc--C--cc-------------------HHHHHhcCcHHH
Q 009471          358 VVSEGGIRSLLAYLD----G---PLPQE---SAVGALRNLVG--S--VS-------------------QEVLISLGFFPR  404 (534)
Q Consensus       358 i~~~g~l~~L~~~L~----~---~~~~~---~a~~aL~~La~--~--~~-------------------~~~l~~~~~i~~  404 (534)
                      .+ ...++.+.+.+.    +   ++.+.   ..+.+|..+..  .  ..                   .-.-....+++.
T Consensus       609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (963)
T 2x19_B          609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL  687 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence            22 223444444332    2   22222   33444444443  1  00                   011122334555


Q ss_pred             HHHHHh--cCCHHHHHHHHHHHHHhc
Q 009471          405 LVHVLK--AGSLGAQQAAASALCRVC  428 (534)
Q Consensus       405 Lv~lL~--~~~~~v~~~A~~aL~~la  428 (534)
                      +..++.  ..++.+.+.++.++..++
T Consensus       688 ~~~~l~~~~~~~~v~e~~~~~l~~~~  713 (963)
T 2x19_B          688 IQKVLSKWLNDAQVVEAVCAIFEKSV  713 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHH
Confidence            666664  346789999999998876

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.49  E-value=0.012  Score=60.12  Aligned_cols=245  Identities=13%  Similarity=0.136  Sum_probs=156.4

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh--cCCcHHHHHHHh--cC-----CC---HHHHHHHHHH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM--GRSNIAALVQLL--TA-----TS---PRIREKTVTV  219 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~--~~g~v~~Lv~lL--~~-----~~---~~v~~~A~~~  219 (534)
                      .......|+..|-+...+.|.-|+-+|+++++..........  ..+..-.|+-++  +.     +|   ..|||.++.+
T Consensus       172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQt  251 (800)
T 3oc3_A          172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYL  251 (800)
T ss_dssp             GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHH
Confidence            333778888888999999999999999999875432111111  112222222222  11     12   6799999999


Q ss_pred             HHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 009471          220 ICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAA  299 (534)
Q Consensus       220 L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~  299 (534)
                      |+.+ ..-+..     ..++..++..+.....+++..+.-.|..+.   +....  -.+.++.++.-|++.|.+++..|+
T Consensus       252 LGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          252 LSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcccHHHHHHH
Confidence            9999 543322     345666666667788999999999999882   11111  134457788888999999999999


Q ss_pred             HHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCCh-hHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--Cch
Q 009471          300 CTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL-GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLP  376 (534)
Q Consensus       300 ~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~-~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~  376 (534)
                      .+|.-++ .++...     .++..+-+.|.+.++. .........|..++.....   .......+|.|..++.+  +++
T Consensus       321 etLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          321 ELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred             HHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence            9999998 322212     2244444555433321 3355666777777764321   11123678889999987  678


Q ss_pred             HHHHHHHHHHhhcCccHHHHHhcCcHHHHHH-HHhcCCHHHHHHHHHHHH
Q 009471          377 QESAVGALRNLVGSVSQEVLISLGFFPRLVH-VLKAGSLGAQQAAASALC  425 (534)
Q Consensus       377 ~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~A~~aL~  425 (534)
                      |..++.++..+..         ..++..+.+ +|-..+++++..+..+..
T Consensus       392 R~AVL~TL~tfL~---------~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          392 RTSILNMVKNLSE---------ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHTTTCCC---------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999988761         123333333 456778888888877664

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.33  E-value=0.17  Score=48.77  Aligned_cols=236  Identities=14%  Similarity=0.186  Sum_probs=156.9

Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-h----HHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-E----VRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~----~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~  346 (534)
                      .+...+.+..|+..+..=+.+.|..+..+..++.... +    ....+.. ..++..|+.--+  ++ ++-..+-..|+.
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~-diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SP-EIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--ST-TTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cc-hhHhHHHHHHHH
Confidence            4555677888888888889999999999888887643 2    2222322 223333333222  22 566777778888


Q ss_pred             HccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHh---cCcHHHHHHHHhcCCHHHHHH
Q 009471          347 LTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLIS---LGFFPRLVHVLKAGSLGAQQA  419 (534)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~---~~~i~~Lv~lL~~~~~~v~~~  419 (534)
                      +.. .+.....+.....+-.+.++++.+  ++...|..++..+-. . .....+++   ..++...-.+|.+++.-++++
T Consensus       150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            776 667777788888888899988764  456667777776654 1 22223333   245778888999999999999


Q ss_pred             HHHHHHHhcCChhH----HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHH---Hh--hCCCHHHHHh
Q 009471          420 AASALCRVCTSAEM----KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREV---KR--DDKSVPNLVQ  490 (534)
Q Consensus       420 A~~aL~~la~~~~~----~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~---~~--~~~~v~~Lv~  490 (534)
                      ++..|+.+-.+..+    .+++.+..-++.++.++.+++..+|..|-.+.-.++.++.....+   ..  .++.+..|-.
T Consensus       229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~  308 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK  308 (341)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence            99999999866433    344444557899999999999999999999998888665443322   22  1123333333


Q ss_pred             hcCCC-Cc---hhHHHHHHHHHHhhc
Q 009471          491 LLDPS-PQ---NTAKKYAVACLASLS  512 (534)
Q Consensus       491 lL~~~-~~---~~~k~~a~~~L~~L~  512 (534)
                      ..... ++   .+.|.+-+.-+.+|-
T Consensus       309 f~~d~~eDeqF~dEK~~lI~~I~~L~  334 (341)
T 1upk_A          309 FQNDRTEDEQFNDEKTYLVKQIRDLK  334 (341)
T ss_dssp             TTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHhCC
Confidence            33332 22   246777777777764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.13  E-value=0.099  Score=59.08  Aligned_cols=296  Identities=12%  Similarity=-0.008  Sum_probs=156.9

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc---hhHHHHhcCCHHH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS---CENWLVSEGVLPP  241 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~---~~~~l~~~g~i~~  241 (534)
                      ..+++.+..++.++...+..-+-  ..++..+.++.+.++|..  ++++..|+.+|..+.....   .+..++..=.+..
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            36788889999999999875442  345566778888888865  7999999999999987653   3333333211112


Q ss_pred             HHHHHc--cCCHHHHHHHHHHHHHhhc-------Ch-----hhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471          242 LIRLVE--SGSTVGKEKATISLQRLSM-------SA-----EMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (534)
Q Consensus       242 Lv~lL~--~~~~~~~~~A~~~L~~Ls~-------~~-----~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (534)
                      .+..+.  ..+.+..+..++.+..++.       .+     +.+.....  .+.++.++.++.+++.++-..++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            222222  3566665555544433321       11     11111111  45778888888888887766555555443


Q ss_pred             cCCch-------HHHHHHh--hCcHHHHHHHhhcCC-----C----h------hHHHHHHHHHHHHccCChHHHHH-HHh
Q 009471          306 SAVPE-------VRQMLAE--EGIVSVMIKLLDCGI-----L----L------GSKEYAAECLQNLTASNENLRRS-VVS  360 (534)
Q Consensus       306 a~~~~-------~~~~i~e--~g~i~~L~~ll~~~~-----~----~------~v~~~a~~~L~~La~~~~~~~~~-i~~  360 (534)
                      .....       .......  ...++.++.-+..++     +    .      +.|......+..++.-++..--. +.+
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~  439 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS  439 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            32100       0111111  223444444443211     0    0      22333332222222212221111 000


Q ss_pred             cCChHHHHHhhcC-----CchHHHHHHHHHHhhc--CccHHHH-----HhcCcHHHHHHHHh-----cCCHHHHHHHHHH
Q 009471          361 EGGIRSLLAYLDG-----PLPQESAVGALRNLVG--SVSQEVL-----ISLGFFPRLVHVLK-----AGSLGAQQAAASA  423 (534)
Q Consensus       361 ~g~l~~L~~~L~~-----~~~~~~a~~aL~~La~--~~~~~~l-----~~~~~i~~Lv~lL~-----~~~~~v~~~A~~a  423 (534)
                       -..+.+-+.+.+     -...|.++.+|+.++.  ......+     .-..+++.+..+++     ..++.|+..++++
T Consensus       440 -~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~  518 (980)
T 3ibv_A          440 -AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEI  518 (980)
T ss_dssp             -HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence             011112222321     2357899999999987  2111100     01123555555655     5678999999999


Q ss_pred             HHHhcCC-hhHHHHHHhcCchHHHHHhh------cCCChHHHHHHHHHHHHhcCC
Q 009471          424 LCRVCTS-AEMKKLVGEAGCTPLLIKLL------EAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       424 L~~la~~-~~~~~~i~~~g~v~~Lv~ll------~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      +.+.+.. ..+      ...++.++..+      .++++.++.+|+.++.+++..
T Consensus       519 l~rys~~~~~~------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~  567 (980)
T 3ibv_A          519 LVRYASFFDYE------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS  567 (980)
T ss_dssp             HHHTGGGGGTC------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence            9998864 221      23344444443      356778999999999999843

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.12  E-value=0.6  Score=53.22  Aligned_cols=295  Identities=13%  Similarity=0.078  Sum_probs=153.4

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC--ch----hHHHHh--
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG--SC----ENWLVS--  235 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~--~~----~~~l~~--  235 (534)
                      .++.+.+..++.++...+..-+-  ..+.+...++.+. .++  ++++++..|+.+|..+....  +.    ...+..  
T Consensus       206 ~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            34577888899988887764432  2244556677776 344  37899999999999998752  21    111110  


Q ss_pred             cCCHHHHHH-H----------H---ccCCHHHHHHHHHHHHHhhcC--------hhhHHHHHhCCChHHHHHHHccCChH
Q 009471          236 EGVLPPLIR-L----------V---ESGSTVGKEKATISLQRLSMS--------AEMARAIVGHGGVRPLIEICQTGDSV  293 (534)
Q Consensus       236 ~g~i~~Lv~-l----------L---~~~~~~~~~~A~~~L~~Ls~~--------~~~~~~l~~~g~i~~Lv~ll~~~~~~  293 (534)
                      .+++..+.. +          .   .+.+.+.....+..+..+...        ++....+  ...++.++.+...++.+
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~  359 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERE  359 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHH
Confidence            112222211 0          1   112333334444444433221        1111111  12356666666677778


Q ss_pred             HHHHHHHHHHHccC----CchHHHHHHh--hCcHHHHHHHhhcCCC------------------h---hHHHHHHHHHHH
Q 009471          294 SQAAAACTLKNISA----VPEVRQMLAE--EGIVSVMIKLLDCGIL------------------L---GSKEYAAECLQN  346 (534)
Q Consensus       294 ~~~~a~~aL~nLa~----~~~~~~~i~e--~g~i~~L~~ll~~~~~------------------~---~v~~~a~~~L~~  346 (534)
                      +...++..+..++.    .+..+..+..  ...++.++..+..+++                  .   ..+..+..+|..
T Consensus       360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~  439 (1049)
T 3m1i_C          360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY  439 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHH
Confidence            87777776666654    2211111111  2234445544421110                  0   113345666666


Q ss_pred             HccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHH--HHHhcCcHHHHHHHHhc-----CCHH
Q 009471          347 LTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQE--VLISLGFFPRLVHVLKA-----GSLG  415 (534)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~--~l~~~~~i~~Lv~lL~~-----~~~~  415 (534)
                      ++...+..   ++ .-..+.+-+.+.+    ...++.++.+++.++......  .-.-..+++.+..+...     +.+.
T Consensus       440 l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~  515 (1049)
T 3m1i_C          440 LTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV  515 (1049)
T ss_dssp             HHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred             HHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence            66322211   10 0112233333432    236889999999998621111  11112233444443321     2345


Q ss_pred             HHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          416 AQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       416 v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ++..++++++.++.. ..+.+.+  ...++.+++.+.+.++.++.+|+.++.+++..
T Consensus       516 v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            555688999988743 2222333  23577788888888899999999999999853

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.03  E-value=0.0022  Score=60.00  Aligned_cols=177  Identities=15%  Similarity=0.091  Sum_probs=107.8

Q ss_pred             hHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 009471          186 EKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLS  265 (534)
Q Consensus       186 ~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls  265 (534)
                      +..+......=....+..+++++++.||..++..|.                 .+.|..++++.+..++..++..+   .
T Consensus        64 ~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll~D~d~~VR~~aA~~l---~  123 (244)
T 1lrv_A           64 WERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADRL---P  123 (244)
T ss_dssp             HHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHHS---C
T ss_pred             HHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCC-----------------HHHHHHHHcCCCHHHHHHHHHhC---C
Confidence            333333333323455666777778888888775421                 13466777888888888777632   1


Q ss_pred             cChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471          266 MSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (534)
Q Consensus       266 ~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~  345 (534)
                                    .+.|..+++++++.+|..++..   +.              .+.+..++++++. .|+..++..  
T Consensus       124 --------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~-~VR~~aa~~--  169 (244)
T 1lrv_A          124 --------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDR-QVRKLVAKR--  169 (244)
T ss_dssp             --------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCH-HHHHHHHHH--
T ss_pred             --------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCH-HHHHHHHHc--
Confidence                          1345566777888888777762   21              1123344455554 677776663  


Q ss_pred             HHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHH
Q 009471          346 NLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASA  423 (534)
Q Consensus       346 ~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~a  423 (534)
                       +               ..+.+..++++  +.++..++..   +             ..+.|..++.+.+..|+..++..
T Consensus       170 -l---------------~~~ll~~ll~D~d~~VR~aaa~~---l-------------~~~~L~~Ll~D~d~~VR~~aa~~  217 (244)
T 1lrv_A          170 -L---------------PEESLGLMTQDPEPEVRRIVASR---L-------------RGDDLLELLHDPDWTVRLAAVEH  217 (244)
T ss_dssp             -S---------------CGGGGGGSTTCSSHHHHHHHHHH---C-------------CGGGGGGGGGCSSHHHHHHHHHH
T ss_pred             -C---------------CHHHHHHHHcCCCHHHHHHHHHh---C-------------CHHHHHHHHcCCCHHHHHHHHHc
Confidence             1               12334455555  3466666653   2             12557777888888999888876


Q ss_pred             HHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHH
Q 009471          424 LCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS  466 (534)
Q Consensus       424 L~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~  466 (534)
                      +.                 .+.|..+ ++++..||..+...|.
T Consensus       218 l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          218 AS-----------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SC-----------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CC-----------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            42                 3566666 8889999998876653

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.87  E-value=0.5  Score=43.54  Aligned_cols=180  Identities=17%  Similarity=0.161  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHccCChHHHHHHH-hcCChHHHHHhh-------cCCch-------HHHHHHHHHHhhc-CccHHHHHh
Q 009471          335 GSKEYAAECLQNLTASNENLRRSVV-SEGGIRSLLAYL-------DGPLP-------QESAVGALRNLVG-SVSQEVLIS  398 (534)
Q Consensus       335 ~v~~~a~~~L~~La~~~~~~~~~i~-~~g~l~~L~~~L-------~~~~~-------~~~a~~aL~~La~-~~~~~~l~~  398 (534)
                      +.|+.|+.-|..=-...++.-..+. ..|.+..|++=+       ..|..       ..+|+..|..++. ++.+..++.
T Consensus        16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~   95 (268)
T 2fv2_A           16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA   95 (268)
T ss_dssp             TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence            4577777666664444455544444 346566665522       22221       3678888899998 888999999


Q ss_pred             cCcHHHHHHHHhcCC-----HHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          399 LGFFPRLVHVLKAGS-----LGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       399 ~~~i~~Lv~lL~~~~-----~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      .++.-.|..+|+..+     ..++-.+.++++.+.+.  ++....+.+.+.+|...+.++.+++--+..|..++..+..+
T Consensus        96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~d  175 (268)
T 2fv2_A           96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD  175 (268)
T ss_dssp             TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred             ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhcc
Confidence            999888888886554     47888999999999954  78888889999999999999999999999999999988876


Q ss_pred             CcchHH-------HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          472 PQNCRE-------VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       472 ~~~~~~-------~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ..+...       |..=...+..++.-+..+++...-++.+.|-..|+.+
T Consensus       176 d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          176 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            544433       3222234555565555555667889999999999988

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.81  E-value=0.84  Score=52.79  Aligned_cols=298  Identities=12%  Similarity=0.042  Sum_probs=167.4

Q ss_pred             chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh--cCCCHHHHHHHHHHHHHhhcCC--
Q 009471          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL--TATSPRIREKTVTVICSLAESG--  227 (534)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~v~~~A~~~L~~La~~~--  227 (534)
                      ..+..++..+.++  +.+.|.+|-..|.++-...          ++...+...|  .+.++.+|..|+..|.+.....  
T Consensus        11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            3355555555554  6667888888887764322          2333333333  3456899999999999886432  


Q ss_pred             ---c-hhHHHHhcCCHHHHHHHHcc---CCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 009471          228 ---S-CENWLVSEGVLPPLIRLVES---GSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAA  299 (534)
Q Consensus       228 ---~-~~~~l~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~  299 (534)
                         + .+..+ +..++..+...-..   .+..++...+.++..++..+ +..|    .+.++.|+.++.. ++..+..++
T Consensus        81 ~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L  154 (1204)
T 3a6p_A           81 GMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVM  154 (1204)
T ss_dssp             GSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHH
T ss_pred             cCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHH
Confidence               2 33333 33334433322111   35778888999998887653 2223    4556888888865 556677788


Q ss_pred             HHHHHccCC-------chHH-----HHHHh--hCcHHHHHHHhhcC------------------CChhHHHHHHHHHHHH
Q 009471          300 CTLKNISAV-------PEVR-----QMLAE--EGIVSVMIKLLDCG------------------ILLGSKEYAAECLQNL  347 (534)
Q Consensus       300 ~aL~nLa~~-------~~~~-----~~i~e--~g~i~~L~~ll~~~------------------~~~~v~~~a~~~L~~L  347 (534)
                      .+|..++..       ...+     ..+.+  ..+++.+..++.+.                  ....+...++.++.+.
T Consensus       155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~  234 (1204)
T 3a6p_A          155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY  234 (1204)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            888777542       1111     12222  12334444444321                  0113556667777665


Q ss_pred             ccCChHHHHHHHhcC--ChHHHHHhhcCCchHHHHHHHHHHhhc-CccHHH---HHh---cCcHHHHHHHHh--------
Q 009471          348 TASNENLRRSVVSEG--GIRSLLAYLDGPLPQESAVGALRNLVG-SVSQEV---LIS---LGFFPRLVHVLK--------  410 (534)
Q Consensus       348 a~~~~~~~~~i~~~g--~l~~L~~~L~~~~~~~~a~~aL~~La~-~~~~~~---l~~---~~~i~~Lv~lL~--------  410 (534)
                      ..--+.  ..+++..  .++.++.++.+++++..|+.+|..+.. ....+.   ++.   ..++..++..+.        
T Consensus       235 l~Wi~~--~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~  312 (1204)
T 3a6p_A          235 IDWVSM--SHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLV  312 (1204)
T ss_dssp             TTTSCH--HHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCC
T ss_pred             HhccCH--HHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCc
Confidence            442221  1233332  677777778889999999999999997 222221   221   112334555542        


Q ss_pred             cCCHHHHHHHHHHHHHhcCChhHHHHHHh----------cCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          411 AGSLGAQQAAASALCRVCTSAEMKKLVGE----------AGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       411 ~~~~~v~~~A~~aL~~la~~~~~~~~i~~----------~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ..+.++.+.-+..+..++.  .....+..          .++++.+..+...++..+...+...-..+...
T Consensus       313 e~d~e~~k~l~~ll~~lg~--~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          313 EKHYVFLKRLCQVLCALGN--QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHHHHH--HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            1124666677777776662  22222211          13577777777777888877777755546544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.66  E-value=0.87  Score=51.24  Aligned_cols=330  Identities=12%  Similarity=0.055  Sum_probs=172.9

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHh---cCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLL---TATSPRIREKTVTVICSLAESGS-CENWLVSEGVLP  240 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL---~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~  240 (534)
                      ..+...+..++.++..++..-...     ....++.++..+   .++++.++..++++++.++..-. ...  .-..+++
T Consensus       460 ~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl~  532 (963)
T 2x19_B          460 PYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVLP  532 (963)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTHH
T ss_pred             CCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence            345667777777888877543321     113344454443   33468899999999999986422 112  2246888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHh--CCChHHHHHHHcc--CChHHHHHHHHHHHHccCC-c-hHHHH
Q 009471          241 PLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVG--HGGVRPLIEICQT--GDSVSQAAAACTLKNISAV-P-EVRQM  314 (534)
Q Consensus       241 ~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~--~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nLa~~-~-~~~~~  314 (534)
                      .++..|.+  +.++..|+.++.+++..-  +..+..  ...+..|..++..  -+...+..++.++..++.. + +....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            88888865  789999999999998531  111110  1123444555554  2567788888888887752 2 33332


Q ss_pred             HHhhCcHHHHHHHhh----cCCChhHHH---HHHHHHHHHccC----Ch-H--------------HHH--HHHhcCChHH
Q 009471          315 LAEEGIVSVMIKLLD----CGILLGSKE---YAAECLQNLTAS----NE-N--------------LRR--SVVSEGGIRS  366 (534)
Q Consensus       315 i~e~g~i~~L~~ll~----~~~~~~v~~---~a~~~L~~La~~----~~-~--------------~~~--~i~~~g~l~~  366 (534)
                      .. ...++.+.+.+.    ...+.+.+.   ..+.+|..+...    .+ .              .+.  .-+....++.
T Consensus       609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (963)
T 2x19_B          609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL  687 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence            22 234444444442    222223333   344555444431    00 0              000  0112223444


Q ss_pred             HHHhhc----CCchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHH----hc-CCHHHHHHHHHHHHHhcCChhHHH
Q 009471          367 LLAYLD----GPLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVL----KA-GSLGAQQAAASALCRVCTSAEMKK  435 (534)
Q Consensus       367 L~~~L~----~~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL----~~-~~~~v~~~A~~aL~~la~~~~~~~  435 (534)
                      +.++++    ++.+.+.++.++..++.  .+..     ..+++.++..+    .. +.+.+-......+..+...+....
T Consensus       688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~  762 (963)
T 2x19_B          688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFP  762 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHH
Confidence            444442    35678888888888765  2111     12345544433    22 344444444444444443322222


Q ss_pred             HHHh--cCchHHHHHhhc---CCChHHHHHHHHHHHHhcCCCcchHHHHhhC----CCHHHHHhhcCCCCchhHHHHHHH
Q 009471          436 LVGE--AGCTPLLIKLLE---AKPNSVREVAAQAISSLVTLPQNCREVKRDD----KSVPNLVQLLDPSPQNTAKKYAVA  506 (534)
Q Consensus       436 ~i~~--~g~v~~Lv~ll~---~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~----~~v~~Lv~lL~~~~~~~~k~~a~~  506 (534)
                      .+.+  ...+.....++.   ..+++++......|..+....+..  +....    ..+..++..+... +..+.+.+..
T Consensus       763 ~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~l~  839 (963)
T 2x19_B          763 PIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FLCERLDVKAVFQCAVLALKFP-EAPTVKASCG  839 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GGCTTSCHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--HcCCcccHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence            2211  122444444443   246899999988888887432211  11111    1234455566643 4467788888


Q ss_pred             HHHhhchh
Q 009471          507 CLASLSPS  514 (534)
Q Consensus       507 ~L~~L~~~  514 (534)
                      .+..+...
T Consensus       840 ~l~~l~~~  847 (963)
T 2x19_B          840 FFTELLPR  847 (963)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHhc
Confidence            88877654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.44  E-value=0.058  Score=51.36  Aligned_cols=181  Identities=12%  Similarity=0.054  Sum_probs=116.2

Q ss_pred             HHHHHccCChHHHHHHHHHHHHccCCch---HHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCCh-----
Q 009471          283 LIEICQTGDSVSQAAAACTLKNISAVPE---VRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNE-----  352 (534)
Q Consensus       283 Lv~ll~~~~~~~~~~a~~aL~nLa~~~~---~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~-----  352 (534)
                      |-+-|.+.+|..|..++..|..+.....   .......  ....+.+-..+.+.+. .++..++.++..++....     
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhhhhhcc
Confidence            5567889999999999999887654321   1111111  2344556667766665 789999999998875321     


Q ss_pred             HHHHHHHhcCChHHHHHh-hcC--CchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 009471          353 NLRRSVVSEGGIRSLLAY-LDG--PLPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC  428 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~-L~~--~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la  428 (534)
                      .......-...++.|+.- +.+  +.++..+..++..++. ......     +++.+...+.+.+|.++..++..|.++.
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            111111223446666653 555  4577888888887775 211111     3466677788999999999988888765


Q ss_pred             CC-----hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          429 TS-----AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       429 ~~-----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      ..     ...+..+  ..+++.+..++.+.++.||..|..++..+-..
T Consensus       168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            32     1112222  22466778888999999999999999877644

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.42  E-value=1.1  Score=50.60  Aligned_cols=294  Identities=14%  Similarity=0.085  Sum_probs=152.3

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC---c---hhHHHHhc-
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG---S---CENWLVSE-  236 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~---~---~~~~l~~~-  236 (534)
                      .++++....+++++......-+  ...+++.+.++.+. .+|.  +++.+..|+.+|..+....   +   ....+... 
T Consensus       206 ~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf  281 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHH
Confidence            3456677788888888876533  23566778899999 8885  5789999999999998632   2   11111100 


Q ss_pred             -CCHHHH-----------HHHHc---cCCHHHHHHHHHHHHHhhcCh-------hhHHHHHhCCChHHHHHHHccCChHH
Q 009471          237 -GVLPPL-----------IRLVE---SGSTVGKEKATISLQRLSMSA-------EMARAIVGHGGVRPLIEICQTGDSVS  294 (534)
Q Consensus       237 -g~i~~L-----------v~lL~---~~~~~~~~~A~~~L~~Ls~~~-------~~~~~l~~~g~i~~Lv~ll~~~~~~~  294 (534)
                       +.+..+           -..+.   ..+.+....-+..+..+....       +....+. ..++..|+.+...++.++
T Consensus       282 ~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~~~l~~Ll~~~~~~d~ei  360 (1023)
T 4hat_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL-LNAHQYLIQLSKIEEREL  360 (1023)
T ss_dssp             HHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHH-HHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHH-HHHHHHHHHhhCCCcHHH
Confidence             111111           11111   123444445555554443211       1101111 112335555555667777


Q ss_pred             HHHHHHHHHHccCC----chHHHHHHh--hCcHHHHHHHhhcCC------------------C-hh-HHH-HHHHHHHHH
Q 009471          295 QAAAACTLKNISAV----PEVRQMLAE--EGIVSVMIKLLDCGI------------------L-LG-SKE-YAAECLQNL  347 (534)
Q Consensus       295 ~~~a~~aL~nLa~~----~~~~~~i~e--~g~i~~L~~ll~~~~------------------~-~~-v~~-~a~~~L~~L  347 (534)
                      -..++.....++..    +..+..+..  ...++.++.-+..+.                  + .+ ... ..-.+|..+
T Consensus       361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l  440 (1023)
T 4hat_C          361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL  440 (1023)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence            66666655555431    001111110  223444444443322                  0 00 111 111333333


Q ss_pred             ccCCh-HHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccH--HHHHhcCcHHHHHHHHhc-----CCHH
Q 009471          348 TASNE-NLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQ--EVLISLGFFPRLVHVLKA-----GSLG  415 (534)
Q Consensus       348 a~~~~-~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~--~~l~~~~~i~~Lv~lL~~-----~~~~  415 (534)
                      +.-.. ..-..     .++.+.+.+.+    -..++.++.+++.++.....  ..-.-..+++.|+.++..     ....
T Consensus       441 ~~l~~~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~  515 (1023)
T 4hat_C          441 THLNVIDTEEI-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAV  515 (1023)
T ss_dssp             HHHCHHHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             hccCHHHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHH
Confidence            32111 11111     12233333332    23689999999999983222  222223467778887753     2234


Q ss_pred             HHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          416 AQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       416 v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      ++..++|++++.+.- ..+.+.+  ...+..|.+.+...++.++.+|+.++.+|+.
T Consensus       516 v~~t~~~~lGry~~wl~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             HHHHHHHHHHTCHHHHHHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            566788999887753 2222222  2346667777777788999999999999984

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=95.05  E-value=2.6  Score=48.01  Aligned_cols=296  Identities=12%  Similarity=0.114  Sum_probs=167.2

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCC-----c
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAESG-----S  228 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~~-----~  228 (534)
                      .+..++..+.+++.+.|.+|-..|.++-. ++         ++...+..+|. +.++.+|..|+..|.+.....     +
T Consensus        17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~   86 (1049)
T 3m1i_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN   86 (1049)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence            35566666677777778888888876643 33         44555556554 456899999999999886532     1


Q ss_pred             -hhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          229 -CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                       .+..+ +..++..+...-.+.     +..++...+.++..++..+ +..|    .+.++.|+..++ .++..+..++.+
T Consensus        87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~~~~~l~~  160 (1049)
T 3m1i_C           87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNVCENNMIV  160 (1049)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHHHHHHHHH
Confidence             23332 223333333322111     3567888888888887642 2223    455688888886 566666777777


Q ss_pred             HHHccCC-----c----hH-----HHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChH
Q 009471          302 LKNISAV-----P----EV-----RQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR  365 (534)
Q Consensus       302 L~nLa~~-----~----~~-----~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~  365 (534)
                      |..++..     .    ..     +..+.+  ..++..+..++.+.....++..++.++.+....-+.  ..+++...++
T Consensus       161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~  238 (1049)
T 3m1i_C          161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILE  238 (1049)
T ss_dssp             HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHH
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHH
Confidence            7776631     0    11     122332  233445556665544446889999999887653332  2345556666


Q ss_pred             HHHH-hhcCCchHHHHHHHHHHhhcC---cc----HHHHHh--cCcHHHHHH-----------HH-h--cCCHHHHHHHH
Q 009471          366 SLLA-YLDGPLPQESAVGALRNLVGS---VS----QEVLIS--LGFFPRLVH-----------VL-K--AGSLGAQQAAA  421 (534)
Q Consensus       366 ~L~~-~L~~~~~~~~a~~aL~~La~~---~~----~~~l~~--~~~i~~Lv~-----------lL-~--~~~~~v~~~A~  421 (534)
                      .+.+ ++.++.++..|+.+|..+...   ..    ...+..  .+++..+..           .. .  ..+.+.....+
T Consensus       239 ~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~  318 (1049)
T 3m1i_C          239 LLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLA  318 (1049)
T ss_dssp             HHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHH
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHH
Confidence            6663 456688899999999998862   21    111110  112222211           11 1  12334444455


Q ss_pred             HHHHHhcCC--------hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          422 SALCRVCTS--------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       422 ~aL~~la~~--------~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      ..+..+...        ++....+  ..+++.+++.....+.++...+.+....++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~  373 (1049)
T 3m1i_C          319 MFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVA  373 (1049)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            555444321        1122222  2346666666666677788888777766654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=94.98  E-value=6.4  Score=44.62  Aligned_cols=293  Identities=11%  Similarity=0.099  Sum_probs=146.6

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCC-c-hhHHHHh--cCCH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALV-QLLTATSPRIREKTVTVICSLAESG-S-CENWLVS--EGVL  239 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~v~~~A~~~L~~La~~~-~-~~~~l~~--~g~i  239 (534)
                      .++++....++.+|..+..--+-  ..+++.+.++.++ .+|  ++++.+..|+.+|..+...+ + +...+..  .+++
T Consensus       218 ~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~  293 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTM  293 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            45677777788888888765432  3566778888774 665  45789999999999998753 1 2222211  1112


Q ss_pred             HHHHHHHc----------c---CCHHHHHHHHHHHHHhhcChhhHHHHHhC-C-------ChHHHHHHHccCChHHHHHH
Q 009471          240 PPLIRLVE----------S---GSTVGKEKATISLQRLSMSAEMARAIVGH-G-------GVRPLIEICQTGDSVSQAAA  298 (534)
Q Consensus       240 ~~Lv~lL~----------~---~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~-g-------~i~~Lv~ll~~~~~~~~~~a  298 (534)
                      ..+-.++.          .   .+.+....-+.++..+....  ...+... +       ++..++.+...++.++-..+
T Consensus       294 ~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~--~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kit  371 (1073)
T 3gjx_A          294 MQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH--GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC  371 (1073)
T ss_dssp             HHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH--HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH--HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            21212221          1   12223333344444432211  1112111 1       23445555566777776666


Q ss_pred             HHHHHHccCC-----c-----------------hHHHHHH-h--hCcHHHHHHHhhcCCCh----------------h--
Q 009471          299 ACTLKNISAV-----P-----------------EVRQMLA-E--EGIVSVMIKLLDCGILL----------------G--  335 (534)
Q Consensus       299 ~~aL~nLa~~-----~-----------------~~~~~i~-e--~g~i~~L~~ll~~~~~~----------------~--  335 (534)
                      ......|+..     +                 ..+..+. .  ...+..++.-+..+.+.                +  
T Consensus       372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~  451 (1073)
T 3gjx_A          372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD  451 (1073)
T ss_dssp             HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred             HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence            5554444321     0                 0111111 0  12222333333222110                0  


Q ss_pred             ---HHHHHHHHHHHHccCC-hHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCcc--HHHHHhcCcHHHH
Q 009471          336 ---SKEYAAECLQNLTASN-ENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVS--QEVLISLGFFPRL  405 (534)
Q Consensus       336 ---v~~~a~~~L~~La~~~-~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~--~~~l~~~~~i~~L  405 (534)
                         .....-.+|..++.-+ +..-..     ..+.+-+.+++    ....+.++++++.++..-.  .+.-.=..+++.|
T Consensus       452 ~~~ly~~mrd~L~~lt~l~~~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~L  526 (1073)
T 3gjx_A          452 SINLYKNMRETLVYLTHLDYVDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDL  526 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHH
Confidence               1112223333333211 111111     12233333333    2357899999999986222  1211123356666


Q ss_pred             HHHHhcC-----CHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          406 VHVLKAG-----SLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       406 v~lL~~~-----~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      +.+....     .+.++...++++++.++- ..+.+.+  ...+..|++.+...++.++.+|+.++..++.
T Consensus       527 l~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          527 LGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             hcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            6666443     123455556777776643 2333333  2347788888888899999999999999973

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=94.79  E-value=0.021  Score=53.31  Aligned_cols=56  Identities=16%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             hcCCHHHHHHHHHH-----HHHHhhcCh-HhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHH
Q 009471          164 QIGHLEAKHKALDS-----LVEAMKEDE-KNVLAVMGRSNIAALVQLLTATSPRIREKTVTV  219 (534)
Q Consensus       164 ~~~~~~~~~~A~~~-----L~~l~~~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~  219 (534)
                      ++.++++|..++..     |..++.+.+ ..+......-..+.|..+++++++.||..++..
T Consensus        60 ~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A           60 ADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             TCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHh
Confidence            44555555555532     233333322 223333332234567778888888999888764

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.58  E-value=0.56  Score=45.04  Aligned_cols=160  Identities=13%  Similarity=0.084  Sum_probs=94.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCC----HHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHH
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGV----LPPLIRLVES-GSTVGKEKATISLQRLSMSAEMAR  272 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~----i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~  272 (534)
                      +..+.++++-+ .+.+--++..++.+..++.....+.+.+.    +..+...+.+ ..+..+-.++++++|+..++..+.
T Consensus       105 l~~l~kil~WP-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAINCP-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHHTSC-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHHcCC-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            45555555333 23444555555555544443333333322    2233344432 355668899999999999988877


Q ss_pred             HHHhC--CChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHH-hhCcHHHHHHHhhcCCChhHHHHHHHHHHHHcc
Q 009471          273 AIVGH--GGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA-EEGIVSVMIKLLDCGILLGSKEYAAECLQNLTA  349 (534)
Q Consensus       273 ~l~~~--g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~  349 (534)
                      .+..+  ..++.+...+.+.+..++..++..+.|++.........- ...++..+..+++...+.+..+.++.+|+++..
T Consensus       184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~  263 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS  263 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence            66542  233444444455688899999999999986320000000 122455555666555555899999999999998


Q ss_pred             CChHHHHHH
Q 009471          350 SNENLRRSV  358 (534)
Q Consensus       350 ~~~~~~~~i  358 (534)
                      .++..++..
T Consensus       264 ~~~~~~~la  272 (304)
T 3ebb_A          264 DDSNAVQLA  272 (304)
T ss_dssp             TCHHHHHHH
T ss_pred             CChhHHHHH
Confidence            766655433

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.39  E-value=2  Score=39.19  Aligned_cols=179  Identities=8%  Similarity=0.020  Sum_probs=110.5

Q ss_pred             hhhhhchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471          149 EATTHGNTRELLARLQIGH--LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES  226 (534)
Q Consensus       149 ~~~~~~~i~~Ll~~L~~~~--~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (534)
                      ...+..+|..++..+..-.  -....+++..+..-.  +.+        ..++....+.+++..++|..|+..|+.+ . 
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~--~~~--------~~~~la~~L~~~~~deVR~~Av~lLg~~-~-   99 (240)
T 3l9t_A           32 RGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSN--DGE--------YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-   99 (240)
T ss_dssp             --CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHS--CHH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-
T ss_pred             hhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhC--CHH--------HHHHHHHHHHhCcchHHHHHHHHHHHhc-c-
Confidence            4456677888877764311  112223333333321  111        2234444566677789999999988887 2 


Q ss_pred             CchhHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHH
Q 009471          227 GSCENWLVSEGVLPPLIR-LVESGSTVGKEKATISLQRLSM--SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK  303 (534)
Q Consensus       227 ~~~~~~l~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~~Ls~--~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  303 (534)
                       ..      ...++.+.. +-.+.+-.+++.++.++..++.  +++.        .++.+...+.++++.+|..|...++
T Consensus       100 -~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~~d~n~~VRR~Ase~~r  164 (240)
T 3l9t_A          100 -KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWLKSSNLHTRRAATEGLR  164 (240)
T ss_dssp             -TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHHHCSSHHHHHHHHHHTC
T ss_pred             -Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhcCCCHHHHHHHHHhhH
Confidence             11      123566655 5566788999999999999874  3332        3477788899999999999988876


Q ss_pred             HccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHH
Q 009471          304 NISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSV  358 (534)
Q Consensus       304 nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i  358 (534)
                      --+..+..   ..+ .-+++.+-.+..+++. .+|......|..++..+++.-..+
T Consensus       165 pW~~~~~~---k~dp~~ll~iL~~L~~D~s~-yVrKSVan~LrD~SK~~Pd~V~~~  216 (240)
T 3l9t_A          165 IWTNRPYF---KENPNEAIRRIADLKEDVSE-YVRKSVGNALRDISKKFPDLVKIE  216 (240)
T ss_dssp             SGGGSTTT---TTCHHHHHHHHHTTTTCSCH-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhccchh---hcCHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHhhhCHHHHHHH
Confidence            43332211   111 2234545455555554 899999999999999887654333

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.09  E-value=3.4  Score=41.76  Aligned_cols=122  Identities=15%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             hcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHH
Q 009471          164 QIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI  243 (534)
Q Consensus       164 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv  243 (534)
                      ..|+...|.-|+.-+....+.-|+...     .++..++.++.+.+..+|..|++.|..+|.+ +....+     ...|+
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~  106 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILT  106 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHH
Confidence            467889999999999999988886533     5688999999999999999999999999988 544443     88999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHH
Q 009471          244 RLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLK  303 (534)
Q Consensus       244 ~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  303 (534)
                      ++|.++++.-....-.+|..+-..+. +..      +..+...+..+++.+|..++.-|.
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dp-k~t------l~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDA-KGT------LGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCH-HHH------HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcCh-HHH------HHHHHHHHcccchHHHHHHHHHHH
Confidence            99999888777777777777654322 222      245555555567888887777664

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.38  E-value=1.7  Score=40.71  Aligned_cols=174  Identities=14%  Similarity=0.056  Sum_probs=106.8

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHh----hcCCChhHHHHHHHHHHHHccC----Ch
Q 009471          281 RPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQNLTAS----NE  352 (534)
Q Consensus       281 ~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll----~~~~~~~v~~~a~~~L~~La~~----~~  352 (534)
                      +.+...+-+.|...+..++..|.....  .+...+..  .++.+++.+    .+.+. .+...++..|..+...    +.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~-~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNP-AALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhccc
Confidence            344444555677666667766655332  11222221  233334433    24444 6777888887776531    00


Q ss_pred             HHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 009471          353 NLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       353 ~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~  430 (534)
                      ..... --.-.+|.|+.-+.+  +.+|+.+-.++..++.-..     ...+++.+++-+++.+..++...+..+..+-..
T Consensus       124 ~~~~~-ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          124 PMSQE-EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCCHH-HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            00000 001247888887766  4588888888877764111     123567788888999999999999888887632


Q ss_pred             hhHHHHHHhcCch---HHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          431 AEMKKLVGEAGCT---PLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       431 ~~~~~~i~~~g~v---~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      -...    ...++   +.+.+++.+.+..+|..|..++..+-
T Consensus       198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            1111    23468   99999999999999999999998664

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=93.31  E-value=9.9  Score=42.78  Aligned_cols=283  Identities=12%  Similarity=0.078  Sum_probs=160.9

Q ss_pred             CHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC---CHHHHHHHHHHHHHhhc--CCc----hhHHHHhcC
Q 009471          167 HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT---SPRIREKTVTVICSLAE--SGS----CENWLVSEG  237 (534)
Q Consensus       167 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~---~~~v~~~A~~~L~~La~--~~~----~~~~l~~~g  237 (534)
                      +++.|.+|-..|.++=. ++         ++......+|..+   ++.+|..|+..|.+...  .++    .+ .-++..
T Consensus        21 d~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~-~~lr~~   89 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRS-SS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL-QMIRDS   89 (980)
T ss_dssp             CHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHc-Ch---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HHHHHH
Confidence            67888888877777643 23         4556666777654   68999999988887654  122    22 222333


Q ss_pred             CHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHccC-------
Q 009471          238 VLPPLIRLVE-SGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDS-VSQAAAACTLKNISA-------  307 (534)
Q Consensus       238 ~i~~Lv~lL~-~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~-~~~~~a~~aL~nLa~-------  307 (534)
                      ++..+.+.-. .++..++.+.+.++..+.... +..|    .+.++.++.++..+++ ......+++|..+..       
T Consensus        90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~  165 (980)
T 3ibv_A           90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV  165 (980)
T ss_dssp             HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence            3444433110 235678888898888887542 1122    3445777777765444 333444455542222       


Q ss_pred             --Cc-------hHHHHHHhh---CcHHHHHHHhhc----CCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471          308 --VP-------EVRQMLAEE---GIVSVMIKLLDC----GILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL  371 (534)
Q Consensus       308 --~~-------~~~~~i~e~---g~i~~L~~ll~~----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L  371 (534)
                        ..       +.++.+.+.   .+++....++..    .++ .++..++.+|.....--+.  ..+++...++.+++++
T Consensus       166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~-~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L  242 (980)
T 3ibv_A          166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNY-GTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFL  242 (980)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHT
T ss_pred             ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHc
Confidence              00       112233221   124444444433    444 7888999999998873222  3456677888899999


Q ss_pred             cCCchHHHHHHHHHHhhc-CccH---HHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCC-------h-----hH
Q 009471          372 DGPLPQESAVGALRNLVG-SVSQ---EVLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTS-------A-----EM  433 (534)
Q Consensus       372 ~~~~~~~~a~~aL~~La~-~~~~---~~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~la~~-------~-----~~  433 (534)
                      .+++++..|+.+|..+.. ....   ..++..=.+...+..+.  ..+.+..+.-++.+..++..       +     +.
T Consensus       243 ~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~  322 (980)
T 3ibv_A          243 QIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPEL  322 (980)
T ss_dssp             TSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhh
Confidence            889999999999999987 2222   12222101111121122  45666655555444433211       1     11


Q ss_pred             H----HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          434 K----KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       434 ~----~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      +    ..+  .+.++.++.++..++.++...+...+..+.
T Consensus       323 ~~~~~~~l--~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l  360 (980)
T 3ibv_A          323 KENCSFQL--YNLFPYLIRYLSDDYDETSTAVFPFLSDLL  360 (980)
T ss_dssp             HHHHHHHH--HHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred             hhhHHHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence            1    122  357888888888888888777776666554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.31  E-value=0.63  Score=44.66  Aligned_cols=160  Identities=14%  Similarity=0.107  Sum_probs=96.5

Q ss_pred             hHHHHHhhc-CCchHHHHHHHHHHhhc-CccHHHHHhcCcHHHHH----HHHh-cCCHHHHHHHHHHHHHhcCChhHHHH
Q 009471          364 IRSLLAYLD-GPLPQESAVGALRNLVG-SVSQEVLISLGFFPRLV----HVLK-AGSLGAQQAAASALCRVCTSAEMKKL  436 (534)
Q Consensus       364 l~~L~~~L~-~~~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv----~lL~-~~~~~v~~~A~~aL~~la~~~~~~~~  436 (534)
                      +..+.+++. ..+.+.+++..++.++. +.....+.+.+.-..++    ..+. ...+..+..++++++|+..++..+..
T Consensus       105 l~~l~kil~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~  184 (304)
T 3ebb_A          105 LQILWKAINCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKL  184 (304)
T ss_dssp             HHHHHHHHTSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHH
T ss_pred             HHHHHHHHcCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHH
Confidence            344555542 14567778888888776 32223333322223333    3332 23567799999999999999888887


Q ss_pred             HHhc--CchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          437 VGEA--GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       437 i~~~--g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +...  ..++.+...+.+.+..+|..++-.+.|++....+...+-.....+..+.++++...+.+....++.+|.+|...
T Consensus       185 l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          185 MMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            7643  24444554555678899999999999998431110011111123455556666555567888899999998865


Q ss_pred             ---HHHHHHHHh
Q 009471          515 ---ARKLLERLE  523 (534)
Q Consensus       515 ---~k~~~~~l~  523 (534)
                         .+.+.+.++
T Consensus       265 ~~~~~~lak~l~  276 (304)
T 3ebb_A          265 DSNAVQLAKSLG  276 (304)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             ChhHHHHHHHcC
Confidence               444444444

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.28  E-value=7  Score=38.69  Aligned_cols=174  Identities=13%  Similarity=0.109  Sum_probs=112.1

Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhh
Q 009471          158 ELLARLQIGHL-EAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLA  224 (534)
Q Consensus       158 ~Ll~~L~~~~~-~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La  224 (534)
                      .++..|+++.. +...+.+..|.--+.. +...+..+. .+|+..|+.+|..           .+...+..++.+|..+.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            34555555532 2233456666655544 445566676 6889999998852           23578899999999998


Q ss_pred             cCCchhHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChh--h-HHHH----------HhCCChHHHHHHHcc-
Q 009471          225 ESGSCENWL-VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAI----------VGHGGVRPLIEICQT-  289 (534)
Q Consensus       225 ~~~~~~~~l-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~l----------~~~g~i~~Lv~ll~~-  289 (534)
                      .+......+ -....+..|+..|.+.++.++..+...|..+|..++  + ...+          .+..-...++..+.. 
T Consensus       149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~  228 (383)
T 3eg5_B          149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  228 (383)
T ss_dssp             SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence            777644444 455789999999999999999999999998886543  2 2211          123446778888876 


Q ss_pred             CChHHHHHHHHHHHHccCCc-------hHHHHHHhhCcHHHHHHHhhcCCC
Q 009471          290 GDSVSQAAAACTLKNISAVP-------EVRQMLAEEGIVSVMIKLLDCGIL  333 (534)
Q Consensus       290 ~~~~~~~~a~~aL~nLa~~~-------~~~~~i~e~g~i~~L~~ll~~~~~  333 (534)
                      .+.+.+..+...+-.+...+       ..|..+...|..+.+-. ++....
T Consensus       229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~  278 (383)
T 3eg5_B          229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIEN  278 (383)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCC
Confidence            45566666655555555433       24455556676555544 554443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=92.87  E-value=8.4  Score=43.67  Aligned_cols=219  Identities=11%  Similarity=0.073  Sum_probs=136.0

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC-----
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTA-TSPRIREKTVTVICSLAESG-----  227 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~-----  227 (534)
                      ..+..++..+.+++.+.|.+|-..|.++- .++         ++...+..+|.. .++.+|..|+..|.+.....     
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~   97 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP   97 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            34666777777788888888777776643 333         334444455544 46999999999999887642     


Q ss_pred             chhHHHHhcCCHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          228 SCENWLVSEGVLPPLIRLVES-----GSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       228 ~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                      +....-++..++..+.+.-.+     .++.++...+.++..+...+ +..|    .+.++.++..++. ++......+.+
T Consensus        98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W----p~fi~dLv~~~~~-~~~~~~~~L~I  172 (1073)
T 3gjx_A           98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW----PTFISDIVGASRT-SESLCQNNMVI  172 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc----cHHHHHHHHHhCC-CHHHHHHHHHH
Confidence            222222333445555554332     24566677888888876542 1122    3445777777754 44555666777


Q ss_pred             HHHccCC--c------------hHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChH
Q 009471          302 LKNISAV--P------------EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIR  365 (534)
Q Consensus       302 L~nLa~~--~------------~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~  365 (534)
                      |..|+..  .            ..++.+.+  ..++..+..++......++...++.+|..+..--+-  ..+++.+.++
T Consensus       173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~  250 (1073)
T 3gjx_A          173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLIS  250 (1073)
T ss_dssp             HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHH
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHH
Confidence            7766542  0            11223333  234444555555544446778888999998874332  3567788888


Q ss_pred             HH-HHhhcCCchHHHHHHHHHHhhc
Q 009471          366 SL-LAYLDGPLPQESAVGALRNLVG  389 (534)
Q Consensus       366 ~L-~~~L~~~~~~~~a~~aL~~La~  389 (534)
                      .+ ..++.++..+..|+.+|..+..
T Consensus       251 ~L~~~~L~~~~~r~aA~dcL~eIv~  275 (1073)
T 3gjx_A          251 TLIYKFLNVPMFRNVSLKCLTEIAG  275 (1073)
T ss_dssp             HHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHh
Confidence            87 5888889999999999999987

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.82  E-value=3.5  Score=37.77  Aligned_cols=156  Identities=14%  Similarity=0.173  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhh-cChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcCCchhHHHH-hcCCH
Q 009471          173 KALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGSCENWLV-SEGVL  239 (534)
Q Consensus       173 ~A~~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~~~~~l~-~~g~i  239 (534)
                      +-+..|.-.+. .+......+ ..+|+..|+..|..           .+.+.+..++.+|..+.........+. ..+.+
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHH
Confidence            34455544444 344556666 56888888887753           135778899999999987776444444 45789


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcChh--h-HHHH----------HhCCChHHHHHHHcc-CChHHHHHHHHHHHHc
Q 009471          240 PPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAI----------VGHGGVRPLIEICQT-GDSVSQAAAACTLKNI  305 (534)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~l----------~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  305 (534)
                      ..++..|.+.++.++..+...|..++..++  . ...+          .+..-...+++.++. .+.+.+..++..+-.+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999988886543  3 2221          122345567777764 3445555555555445


Q ss_pred             cCCc-------hHHHHHHhhCcHHHHHHHhhc
Q 009471          306 SAVP-------EVRQMLAEEGIVSVMIKLLDC  330 (534)
Q Consensus       306 a~~~-------~~~~~i~e~g~i~~L~~ll~~  330 (534)
                      ...+       ..|..+...|..+.+ +-++.
T Consensus       179 i~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~  209 (233)
T 2f31_A          179 ITPAEELDFRVHIRSELMRLGLHQVL-QELRE  209 (233)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence            4433       244555556655444 44443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.64  E-value=2.9  Score=40.25  Aligned_cols=109  Identities=15%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             HHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHH
Q 009471          262 QRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYA  340 (534)
Q Consensus       262 ~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a  340 (534)
                      .+|-.+ ++...-++...|+..+..+..-++.++..+.+..|.+++.....+.. --.+.+|.++..++-..+.++.+..
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~eDdvvYSG  345 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHPDDEVIYSG  345 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCCCcceEEec
Confidence            344444 44456799999999999999999999999999999998875433321 1156789999888644334899999


Q ss_pred             HHHHHHHccCChHHHHHHHhcCChHHHHHhh
Q 009471          341 AECLQNLTASNENLRRSVVSEGGIRSLLAYL  371 (534)
Q Consensus       341 ~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L  371 (534)
                      .+.|.|...+....++..+..|.+..|-..+
T Consensus       346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I  376 (619)
T 3c2g_A          346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTII  376 (619)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             chHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence            9999999999999999999999999988876

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=92.23  E-value=2.5  Score=47.86  Aligned_cols=218  Identities=12%  Similarity=0.113  Sum_probs=137.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhcC-----Cc
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLT-ATSPRIREKTVTVICSLAES-----GS  228 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~A~~~L~~La~~-----~~  228 (534)
                      .+..++..+.+++.+.|.+|-..|.++-. ++         ++...+..+|. +.++.+|..|+..|.+....     ++
T Consensus        17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~   86 (1023)
T 4hat_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN   86 (1023)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHc-Cc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            46667777777777777777777766543 33         34444555554 45689999999999888653     22


Q ss_pred             hhHHHHhcCCHHHHHHHHccC-----CHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHH
Q 009471          229 CENWLVSEGVLPPLIRLVESG-----STVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTL  302 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL  302 (534)
                      .....++..++..+.+.-.++     ...++...+.++..+...+ +..|    .+.++.++..++. ++......+..|
T Consensus        87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W----p~~l~dL~~~l~~-~~~~~~~~L~iL  161 (1023)
T 4hat_C           87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSSS-SVNVCENNMIVL  161 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc----hHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            222333444455555543322     3456667788888876643 1222    4456778888764 444455566666


Q ss_pred             HHccCC---------c-----hHHHHHHh--hCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHH
Q 009471          303 KNISAV---------P-----EVRQMLAE--EGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS  366 (534)
Q Consensus       303 ~nLa~~---------~-----~~~~~i~e--~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~  366 (534)
                      ..|+..         .     ..+..+.+  ..++..+..++......++...++.++.....--+-  ..+++...++.
T Consensus       162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i--~~i~~~~ll~~  239 (1023)
T 4hat_C          162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY--RYIYETNILEL  239 (1023)
T ss_dssp             HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH--HHhcchhHHHH
Confidence            655431         1     12222332  344555566665544337888899999988863222  35667788999


Q ss_pred             HH-HhhcCCchHHHHHHHHHHhhc
Q 009471          367 LL-AYLDGPLPQESAVGALRNLVG  389 (534)
Q Consensus       367 L~-~~L~~~~~~~~a~~aL~~La~  389 (534)
                      ++ .++.++..+..|+.+|..+..
T Consensus       240 l~~~~L~~~~~r~~A~ecL~eIv~  263 (1023)
T 4hat_C          240 LSTKFMTSPDTRAITLKCLTEVSN  263 (1023)
T ss_dssp             HHTHHHHSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHc
Confidence            99 888888899999999999886

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=91.84  E-value=12  Score=37.85  Aligned_cols=241  Identities=14%  Similarity=0.137  Sum_probs=131.3

Q ss_pred             cCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHH
Q 009471          248 SGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK  326 (534)
Q Consensus       248 ~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~  326 (534)
                      .++...+..|+..+.....+ ++....-     +..++.+|.+.|..+|..|...|..+|.+ +....     +...|++
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence            35788999999999998765 5544432     38999999999999999999999999987 44333     4678999


Q ss_pred             HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhh-cC-CchHHHHHHHHHHhhcC---ccHHHHHhcCc
Q 009471          327 LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYL-DG-PLPQESAVGALRNLVGS---VSQEVLISLGF  401 (534)
Q Consensus       327 ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L-~~-~~~~~~a~~aL~~La~~---~~~~~l~~~~~  401 (534)
                      +|..++. .-...+-.+|..+-..++..        .+..++..+ .+ +.+|+.++..|..=..+   +....=++.-+
T Consensus       108 lLqtdd~-~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          108 LLQTDDS-AEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HTTCCCH-HHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHhccch-HHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            9987765 33444445555555434322        233333332 22 45788877777654431   11111223334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhc--CChhHHHHHHhcCchHHHHHhh------cCCChHHHHHHHHH----HHHhc
Q 009471          402 FPRLVHVLKAGSLGAQQAAASALCRVC--TSAEMKKLVGEAGCTPLLIKLL------EAKPNSVREVAAQA----ISSLV  469 (534)
Q Consensus       402 i~~Lv~lL~~~~~~v~~~A~~aL~~la--~~~~~~~~i~~~g~v~~Lv~ll------~~~~~~v~~~A~~a----L~~L~  469 (534)
                      +..+.+.|++-+..--......|..+-  .....++.+     ++.+....      ...+.+....-..+    |-.++
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS  253 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS  253 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            556666665555433334444444333  223333333     22222221      12344444444433    33444


Q ss_pred             CCCcchHHHHh--hCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          470 TLPQNCREVKR--DDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       470 ~~~~~~~~~~~--~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ....+.+ |+.  -.+.+|.+-.+-+..++++.|-.-+.++.-++..
T Consensus       254 ~~v~Stk-Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~  299 (507)
T 3u0r_A          254 KNVHSTR-FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSF  299 (507)
T ss_dssp             TTBCCHH-HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTT
T ss_pred             cCCChHH-HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccC
Confidence            3333322 322  1134454433333322333666667777666654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=91.66  E-value=4  Score=37.19  Aligned_cols=141  Identities=12%  Similarity=0.117  Sum_probs=95.0

Q ss_pred             hHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhc-CCchhH
Q 009471          155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAE-SGSCEN  231 (534)
Q Consensus       155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~-~~~~~~  231 (534)
                      .+..++..|. +...++|..|+..|..+ ..+         ...++.+.. +-.+++-.||+.++.++..++. ..+.  
T Consensus        71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            3445566554 45577788999877776 311         123555555 5556779999999999999985 3321  


Q ss_pred             HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh---hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-
Q 009471          232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA---EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-  307 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-  307 (534)
                           ..++.+....++++..++..|...+.--+..+   .+...+     ++.|-.+..+++.-+|.+..+.|+.++. 
T Consensus       139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~l-----l~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEA-----IRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHH-----HHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHH-----HHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence                 25788889999999999999988764322211   111111     3556666778888999999999999998 


Q ss_pred             CchHHHHHHh
Q 009471          308 VPEVRQMLAE  317 (534)
Q Consensus       308 ~~~~~~~i~e  317 (534)
                      +|+.-..+++
T Consensus       209 ~Pd~V~~~~~  218 (240)
T 3l9t_A          209 FPDLVKIELK  218 (240)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4454444443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.18  E-value=13  Score=36.88  Aligned_cols=163  Identities=14%  Similarity=0.117  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcCCchhHH-HHhcCCH
Q 009471          173 KALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA-----------TSPRIREKTVTVICSLAESGSCENW-LVSEGVL  239 (534)
Q Consensus       173 ~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~-----------~~~~v~~~A~~~L~~La~~~~~~~~-l~~~g~i  239 (534)
                      +.+..|.-.+.. +......+. .+|+..|+..|..           .+...+..++.+|..+..+...... +...+++
T Consensus        24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred             HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence            345555544443 445556664 5888888887742           1367788999999999887764444 4455789


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhhcChh--h-HHHH----------HhCCChHHHHHHHcc-CChHHHHHHHHHHHHc
Q 009471          240 PPLIRLVESGSTVGKEKATISLQRLSMSAE--M-ARAI----------VGHGGVRPLIEICQT-GDSVSQAAAACTLKNI  305 (534)
Q Consensus       240 ~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~--~-~~~l----------~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nL  305 (534)
                      ..+...|.+.++.++..+...|..+|..++  . ...+          .+..-...++..+.. .+.+.+..++..+-.+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999988887543  2 2211          123345667777763 4455555555555445


Q ss_pred             cCCc-------hHHHHHHhhCcHHHHHHHhhcCCChhHH
Q 009471          306 SAVP-------EVRQMLAEEGIVSVMIKLLDCGILLGSK  337 (534)
Q Consensus       306 a~~~-------~~~~~i~e~g~i~~L~~ll~~~~~~~v~  337 (534)
                      ...+       ..|..+...|..+.+ +-++....+.+.
T Consensus       183 v~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L~  220 (386)
T 2bnx_A          183 ITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMK  220 (386)
T ss_dssp             HTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhHH
Confidence            4433       345566666655554 555543332443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=89.88  E-value=7.3  Score=38.56  Aligned_cols=159  Identities=17%  Similarity=0.155  Sum_probs=99.1

Q ss_pred             HHHHHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHH
Q 009471          271 ARAIVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKE  338 (534)
Q Consensus       271 ~~~l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~  338 (534)
                      ...|. .+|+..|+.++..           .+...+..++.||+.+.........+.. ...+..++..+.+... .++.
T Consensus       103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~-~~~~  180 (383)
T 3eg5_B          103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMI  180 (383)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH-HHHH
T ss_pred             HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch-HHHH
Confidence            34455 6788888888742           2346778899999999988766666665 7889999999887776 7899


Q ss_pred             HHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc-CCHHHH
Q 009471          339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-GSLGAQ  417 (534)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~  417 (534)
                      .++..|..+|...+.       .||-+.+++.+             .++..      ..+..-+..++..+++ .+.+.+
T Consensus       181 ~aleLL~~lc~~~~~-------~gG~~~VL~Al-------------~~~~~------~~e~~RF~~lv~~L~~~~~~e~~  234 (383)
T 3eg5_B          181 DAAKLLSALCILPQP-------EDMNERVLEAM-------------TERAE------MDEVERFQPLLDGLKSGTSIALK  234 (383)
T ss_dssp             HHHHHHHHHHTCCSS-------TTHHHHHHHHH-------------HHHHH------HHTSCTTHHHHHTTSTTSCHHHH
T ss_pred             HHHHHHHHHHhCcCc-------CCcHHHHHHHH-------------HHHHH------hCCCCcHHHHHHHHHccCcHHHH
Confidence            999999998875420       12233333322             22211      1123345566677765 456677


Q ss_pred             HHHHHHHHHhcCC---h----hHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          418 QAAASALCRVCTS---A----EMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       418 ~~A~~aL~~la~~---~----~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      ..+...+-.+..+   .    ..+..+...|..+.+-++-...++++
T Consensus       235 ~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          235 VGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  281 (383)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence            6666666666544   1    34556667776666655443444433

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=89.67  E-value=4.5  Score=38.96  Aligned_cols=126  Identities=13%  Similarity=0.147  Sum_probs=93.2

Q ss_pred             HHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHHHHHHcc-CCHHHH
Q 009471          177 SLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVES-GSTVGK  254 (534)
Q Consensus       177 ~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~Lv~lL~~-~~~~~~  254 (534)
                      -|.+++-++.....-++..+||..+....+-++.++.......|...+.... +..-  -.+.+|.+++.++- ++.++.
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcceE
Confidence            3566666777778889999999999999999999999999999988876554 2111  13468888888875 588899


Q ss_pred             HHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccC-------ChHHHHHHHHHHHH
Q 009471          255 EKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTG-------DSVSQAAAACTLKN  304 (534)
Q Consensus       255 ~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~-------~~~~~~~a~~aL~n  304 (534)
                      ......|.|...+... +..-...|+|+.|-..+...       +..-+..+|+.++|
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence            9999999999777544 55555689999888776532       23344556655554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=89.56  E-value=6.7  Score=35.82  Aligned_cols=149  Identities=17%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             hHHHHHHhhCcHHHHHHHhhc----C------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchH
Q 009471          310 EVRQMLAEEGIVSVMIKLLDC----G------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQ  377 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~----~------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~  377 (534)
                      ..-+.+ ..+++..|++++..    +      .+...+..++.||..+..........+-+..++..+...+++  +.++
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r  113 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  113 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence            334444 35677777777642    1      122557889999999987444444444466788888888876  4567


Q ss_pred             HHHHHHHHHhhc-Cc--c-HHHHHh----------cCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCh-------hHHH
Q 009471          378 ESAVGALRNLVG-SV--S-QEVLIS----------LGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSA-------EMKK  435 (534)
Q Consensus       378 ~~a~~aL~~La~-~~--~-~~~l~~----------~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~~-------~~~~  435 (534)
                      ..++..|..+|. +.  . ...+++          ..-...+++.+++ .+.+.+..+...+-.+..++       ..|.
T Consensus       114 ~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~  193 (233)
T 2f31_A          114 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS  193 (233)
T ss_dssp             HHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            888888988887 32  4 443322          2235567777753 45677777776666666542       3456


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHH
Q 009471          436 LVGEAGCTPLLIKLLEAKPNSVRE  459 (534)
Q Consensus       436 ~i~~~g~v~~Lv~ll~~~~~~v~~  459 (534)
                      .+...|..+.+-++-...++++..
T Consensus       194 ef~~~Gl~~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          194 ELMRLGLHQVLQELREIENEDMKV  217 (233)
T ss_dssp             HHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHCChHHHHHHHhccCCHHHHH
Confidence            667778666666555555555443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.34  E-value=2.9  Score=39.60  Aligned_cols=148  Identities=14%  Similarity=0.169  Sum_probs=94.3

Q ss_pred             hchHHHHHHHHhcC------CHHHHHHHHHHHHHHhhcChHhHHHHhcC--CcHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 009471          153 HGNTRELLARLQIG------HLEAKHKALDSLVEAMKEDEKNVLAVMGR--SNIAALVQLLTATSPRIREKTVTVICSLA  224 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~------~~~~~~~A~~~L~~l~~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~v~~~A~~~L~~La  224 (534)
                      ...+......+++|      +.+.-..|+..|.+++. +-++...+++.  ..+..|+ +....++.+++.|+++|+..-
T Consensus        21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL   98 (315)
T 3qml_C           21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCL   98 (315)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH
Confidence            34456666677777      45567788888888875 44444445432  2233333 234455889999999999999


Q ss_pred             cCCc-hhHHHHh--cCCHHHHHHHHcc-------CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccC--Ch
Q 009471          225 ESGS-CENWLVS--EGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTG--DS  292 (534)
Q Consensus       225 ~~~~-~~~~l~~--~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~--~~  292 (534)
                      .+++ ..+.+.+  ...+..++.-|..       ....+...-..+|..|..++.   .| ...++..|.+++..+  ++
T Consensus        99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~  174 (315)
T 3qml_C           99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDK  174 (315)
T ss_dssp             TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCH
T ss_pred             ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCH
Confidence            9886 3333333  2445555444433       244566677788888887752   12 256788888888777  88


Q ss_pred             HHHHHHHHHHHHcc
Q 009471          293 VSQAAAACTLKNIS  306 (534)
Q Consensus       293 ~~~~~a~~aL~nLa  306 (534)
                      .++..++..+..+-
T Consensus       175 ~~k~Kvl~li~d~f  188 (315)
T 3qml_C          175 QLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            88888777776544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=89.24  E-value=29  Score=39.32  Aligned_cols=196  Identities=12%  Similarity=0.081  Sum_probs=114.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhc----Ch
Q 009471          198 IAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSM----SA  268 (534)
Q Consensus       198 v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~----~~  268 (534)
                      +..+.+++.++.....+ |+.+|..+... .+..+      .+..+..++++    .++.++..+.-++..|..    +.
T Consensus       358 ~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~  430 (1056)
T 1lsh_A          358 LLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT  430 (1056)
T ss_dssp             HHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC
Confidence            56666677665522222 33333332221 12222      25566667765    356677777766666642    21


Q ss_pred             hhHHHHHhCCChHH----HHHHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhc------CCChhHHH
Q 009471          269 EMARAIVGHGGVRP----LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDC------GILLGSKE  338 (534)
Q Consensus       269 ~~~~~l~~~g~i~~----Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~------~~~~~v~~  338 (534)
                      ..+    ....++.    |.+.+..++..-+..++.+|+|+...          ..++.+.+++..      ..+..++.
T Consensus       431 ~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~  496 (1056)
T 1lsh_A          431 VSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQA  496 (1056)
T ss_dssp             SSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             CCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHH
Confidence            111    1111333    44455667777788999999998752          356777777642      12235778


Q ss_pred             HHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhc-CC
Q 009471          339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKA-GS  413 (534)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~-~~  413 (534)
                      .|+.+|..++...+..-        -+.++++..|    +++|..|+..|.....+        ...+..+...+.. .+
T Consensus       497 aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~--------~~~l~~ia~~l~~E~~  560 (1056)
T 1lsh_A          497 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESKPS--------VALVSMVAVRLRREPN  560 (1056)
T ss_dssp             HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC--------HHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHCcC--------HHHHHHHHHHHhhCch
Confidence            89999999987554322        2345565533    56788887777543321        1245666666654 56


Q ss_pred             HHHHHHHHHHHHHhcCC
Q 009471          414 LGAQQAAASALCRVCTS  430 (534)
Q Consensus       414 ~~v~~~A~~aL~~la~~  430 (534)
                      ..|.......|.+++.+
T Consensus       561 ~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          561 LQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            77877788888888765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=85.82  E-value=13  Score=42.32  Aligned_cols=171  Identities=11%  Similarity=0.035  Sum_probs=108.1

Q ss_pred             hHHHHHHHHhc----CCHHHHHHHHHHHHHHhhc----ChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 009471          155 NTRELLARLQI----GHLEAKHKALDSLVEAMKE----DEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES  226 (534)
Q Consensus       155 ~i~~Ll~~L~~----~~~~~~~~A~~~L~~l~~~----~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~  226 (534)
                      .+..+...+.+    .++..+..++-++..++..    ++.+....+. .....|.+.++..+.+-+..++.+|+|+...
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p  470 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQP  470 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence            34444555543    4566666777777666531    1111001110 1233444555677788889999999999853


Q ss_pred             CchhHHHHhcCCHHHHHHHHcc-------CCHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHHH--ccCChHHHH
Q 009471          227 GSCENWLVSEGVLPPLIRLVES-------GSTVGKEKATISLQRLSMSAE-MARAIVGHGGVRPLIEIC--QTGDSVSQA  296 (534)
Q Consensus       227 ~~~~~~l~~~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~Ls~~~~-~~~~l~~~g~i~~Lv~ll--~~~~~~~~~  296 (534)
                      .          .++.|.+++..       ....++..|.++|.+++...+ ..+        +.+..+.  ...++++|.
T Consensus       471 ~----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          471 N----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             G----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred             h----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHH
Confidence            2          46777777742       245678889999999986532 222        4566777  457889999


Q ss_pred             HHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          297 AAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       297 ~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                      .|+..|..-.  |.       ...+..+...+..+...++.......|.+++.....
T Consensus       533 aA~~~Lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          533 RSCIVFFESK--PS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHTC--CC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHC--cC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            8888885422  21       234666777777655568888999999999986543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=83.49  E-value=33  Score=33.86  Aligned_cols=156  Identities=17%  Similarity=0.154  Sum_probs=96.5

Q ss_pred             HHHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471          273 AIVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA  340 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a  340 (534)
                      .|. .+|+..|+.++..           .+...+..++.||+.+.........+.. .+++..++..+.+... .++..+
T Consensus        43 ~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~-~~r~~v  120 (386)
T 2bnx_A           43 TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDA  120 (386)
T ss_dssp             HHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-HHHHHH
T ss_pred             HHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc-hHHHHH
Confidence            443 5777777777642           1345678899999999988755555555 7788888888876665 788889


Q ss_pred             HHHHHHHccCChHHHHHHHhcCC-hHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh-cCCHHHHH
Q 009471          341 AECLQNLTASNENLRRSVVSEGG-IRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK-AGSLGAQQ  418 (534)
Q Consensus       341 ~~~L~~La~~~~~~~~~i~~~g~-l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~  418 (534)
                      +..|..+|..++.        +| -+.+++.++             +...      ..+..-+..++..+. +.+.+.+.
T Consensus       121 leLL~alc~~~~~--------~G~~~~VL~Al~-------------~~~~------~~e~~RF~~lv~~l~~~~~~e~~~  173 (386)
T 2bnx_A          121 AKLLSALCILPQP--------EDMNERVLEAMT-------------ERAE------MDEVERFQPLLDGLKSGTSIALKV  173 (386)
T ss_dssp             HHHHHHHHTCCSS--------TTHHHHHHHHHH-------------HHHH------HHTSCTTHHHHHHTSTTSCHHHHH
T ss_pred             HHHHHHHHcCCCC--------CChHHHHHHHHH-------------HHHH------hCchhhHHHHHHHHHcCChHHHHH
Confidence            9999988874431        12 333333332             2211      112333556777775 44566776


Q ss_pred             HHHHHHHHhcCC-h------hHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          419 AAASALCRVCTS-A------EMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       419 ~A~~aL~~la~~-~------~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      .++..+-.+..+ +      ..|..+...|..+.+-++-...++.+
T Consensus       174 a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          174 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence            666666666654 2      35566777776666655544455444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-09
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 5e-13
 Identities = 56/330 (16%), Positives = 111/330 (33%), Gaps = 8/330 (2%)

Query: 191 AVMGRSNIAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVE-S 248
           A +    I  L +LL      +  K   ++  L+ +  S    + S  ++  ++R ++ +
Sbjct: 12  AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 71

Query: 249 GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV 308
                      +L  LS   E   AI   GG+  L+++  +        A  TL N+   
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131

Query: 309 PE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRS- 366
            E  +  +   G +  M+ LL+   +         CLQ L   N+  +  +++ GG ++ 
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD-CLQILAYGNQESKLIILASGGPQAL 190

Query: 367 --LLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASAL 424
             ++          +    L+ L    S +  I      + + +                
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250

Query: 425 CRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKS 484
            R   S    K  G  G    L++LL +   +V   AA  +S+L       + +      
Sbjct: 251 LRNL-SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309

Query: 485 VPNLVQLLDPSPQNTAKKYAVACLASLSPS 514
           +  LV+ +  +           C      S
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTS 339

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 7e-12
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 347 LTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNL-VGSVSQEVLISLGFFPRL 405
           L  ++++ +R     G  +  +  +      E   GAL  L     ++ V+  L   P  
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465

Query: 406 VHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
           V +L +     Q+ AA  LC +    E  + +   G T  L +LL ++   V   AA  +
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 466 SSL 468
             +
Sbjct: 526 FRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 7e-12
 Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 1/135 (0%)

Query: 172 HKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN 231
             A+  LV+ +    ++               +       I E     +  LA       
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQ-QQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 232 WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGD 291
            +     +P  ++L+ S     +  A   L  L+   E A AI   G   PL E+  + +
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 514

Query: 292 SVSQAAAACTLKNIS 306
                 AA  L  +S
Sbjct: 515 EGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (152), Expect = 3e-11
 Identities = 37/238 (15%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQ-MLAEEGIVSVMI 325
            AE+A        +  L ++    D V    AA  +  +S     R  ++    +VS ++
Sbjct: 11  DAELAT-----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 326 KLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGA 383
           + +     + +    A  L NL+   E    ++   GGI +L+  L  P+      A+  
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 384 LR--NLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEA 440
           L    L    ++  +   G   ++V +L   ++         L  +   + E K ++  +
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184

Query: 441 GCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQN 498
           G    L+ ++              +  ++++  + +    +   +  L   L    Q 
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 242

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 5e-11
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 20/185 (10%)

Query: 163 LQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICS 222
           L         KA   L+  +     N   +  +  I  LVQLL       + +T      
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRP 282
                      + EG                    T +L  L+        I G   +  
Sbjct: 424 QQFVEGVRMEEIVEG-------------------CTGALHILARDVHNRIVIRGLNTIPL 464

Query: 283 LIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAE 342
            +++  +     Q  AA  L  ++   E  + +  EG  + + +LL      G   YAA 
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAA 523

Query: 343 CLQNL 347
            L  +
Sbjct: 524 VLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 18/84 (21%), Positives = 31/84 (36%)

Query: 444 PLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503
           P L KLL  +   V   AA  +  L     +   + R  + V  +V+ +  +      + 
Sbjct: 20  PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79

Query: 504 AVACLASLSPSARKLLERLERGRL 527
               L +LS     LL   + G +
Sbjct: 80  TAGTLHNLSHHREGLLAIFKSGGI 103

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 5e-11
 Identities = 53/357 (14%), Positives = 119/357 (33%), Gaps = 43/357 (12%)

Query: 198 IAALVQLLTATSPRIREKTVTVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVGKEK 256
           I   VQ L++   + +      I     +  S +  +   G +  L+ L+ S +   ++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 257 ATISLQRLSM-SAEMARAIVGHGGVRPLIEICQTGDSVS-QAAAACTLKNISAVPEVRQM 314
           A  +L+ L   S           G+R  + + +   +   Q      L N+S+  E+++ 
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 315 LAEEGIVSVMIKLLDCGILLGS--------------KEYAAECLQNLTASNENLRRSVVS 360
           L  + +  +  +++                         A  CL+NL++++   +     
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 361 EGGIRSLLAYLDGPLP--------QESAVGALRNLVGSVSQEV---LISLGFFPRLVHVL 409
            G I SL+AY+   +          E+ +  L NL   +  EV      L +  R  +  
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 410 KAG--------SLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVR--- 458
           K+                    L    T+ +    +  +      + L+           
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 459 ---EVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
               +     S  +      + +   +K +P + +LL  S  +   +   + L+++S
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLSNMS 359

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 17/224 (7%)

Query: 180 EAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV-TVICSLAESGSCENWLVSEGV 238
           E      +            +     +  S ++        +     +     WL     
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 239 LPPLIRLVESGS------TVGKEKATISLQRLSMSAEMARAIVG-HGGVRPLIEICQTGD 291
           +   + L+                  ++  +  MS+ M++ I     G+  +  + Q+G+
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 292 SVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSK-----EYAAECLQN 346
           S    + A  L N+S  P + +++  +     + +LL       S        A   ++N
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQVF-PEVTRLLTSHTGNTSNSEDILSSACYTVRN 403

Query: 347 LTASNENLRRSVVSEGGIRSLLAYL---DGPLPQESAVGALRNL 387
           L AS   L +   S   + +++        P   E+A   L ++
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 3e-09
 Identities = 38/312 (12%), Positives = 92/312 (29%), Gaps = 35/312 (11%)

Query: 239 LPPLIRLVESGSTVGKEKATISLQRLS-MSAEMARAIVGHGGVRPLIEICQTGDSVSQAA 297
           +P  ++ + S     +      +Q          + +   GG+  L+++ ++ +   Q A
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 298 AACTLKNISAV-PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN--- 353
           AA  L+N+       +     +  +   + LL        ++     L NL++++E    
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 354 -------------LRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS--QEVLIS 398
                        +        G  ++   +  P    +A G LRNL  + +  Q +   
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 399 LGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPL------------- 445
            G    L+  ++     ++    S    +C    +   +     T               
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 446 --LIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503
                    K + +                          ++   + L+  S ++   + 
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 504 AVACLASLSPSA 515
               L +L+ S 
Sbjct: 304 CAGALQNLTASK 315

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 7e-09
 Identities = 52/414 (12%), Positives = 125/414 (30%), Gaps = 49/414 (11%)

Query: 158 ELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTV 217
           + +  L     + +      +     +DE     V     I  LV LL + +  +++   
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 218 TVICSLA-ESGSCENWLVSEGVLPPLIRLVESGSTVG-KEKATISLQRLSMSAEMARAIV 275
             + +L   S + +     +  +   + L+        +++ T  L  LS + E+   ++
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 276 GHGGVRPLIEIC---------------QTGDSVSQAAAACTLKNISAVPE-VRQMLAEEG 319
                     +                +  D      A   L+N+S+     + M    G
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQES 379
           ++  ++  +   +     +  +         N + R         R L         ++S
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 380 AVGALRNLVGSVSQE-----------------VLISLGFFPRLVHVLKAGSLGAQQAAAS 422
           + G   N    +                     L         ++++      A   A +
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 423 ALCRVCTS-------AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC 475
              +  T+          + +  +    P + +LL++  + V    A  +S++   P   
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365

Query: 476 REVKRDDKSVPNLVQLLDPSPQNTAK-----KYAVACLASLSPSARKLLERLER 524
           R +    +  P + +LL     NT+        A   + +L  S  +L ++   
Sbjct: 366 RVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 16/214 (7%)

Query: 157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKT 216
           +           +  +   D  +   + + K    +     I   + L+  +      + 
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 217 VTVICSLAESGSCENW-------LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAE 269
                    +              + E  LP + RL++SG++         L  +S    
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363

Query: 270 MARAIVGHGGVRPLIEICQTGDSVS------QAAAACTLKNISAV-PEVRQMLAEEGIVS 322
           +   ++G+     +  +  +    +       ++A  T++N+ A  P++ +      +++
Sbjct: 364 L-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 323 VMIKLLDCGILLGSKEYAAECLQNLTASNENLRR 356
            +I L        + E A   L ++  S++ L+ 
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDM-WSSKELQG 455

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 54/377 (14%), Positives = 131/377 (34%), Gaps = 54/377 (14%)

Query: 158 ELLARLQIGHLEAKHKALDSLVE-AMKEDEKNVLAVMGRSNIAALVQLLTATSPR-IREK 215
           ++  +L    ++ +  A     +   +E    +  V+    +  LV+ +    P  ++ +
Sbjct: 80  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 139

Query: 216 TVTVICSLAESGSCENWLVSE-GVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA 273
               + ++A   S +  +V +   +P  I+L+ +GS   KE+A  +L  ++  S +    
Sbjct: 140 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 199

Query: 274 IVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGIL 333
           ++    + P++ +  +        A  TL N+    + +   +        +  L   + 
Sbjct: 200 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 259

Query: 334 LGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESA------------- 380
             +   A   +  L+   +   ++V+     + L+  L                      
Sbjct: 260 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 319

Query: 381 ------------VGALRNLVGSVSQEV---------------------LISLGFFPRLVH 407
                       + ALR L+ S  + +                     +I     P LV 
Sbjct: 320 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 379

Query: 408 VLKAGSLGAQQAAASALCRVCTSA----EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQ 463
           +L+      ++ A  A+    +      ++ + +   GC   L  LLE   N + EV   
Sbjct: 380 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLD 439

Query: 464 AISSLVTLPQNCREVKR 480
           A+ +++ + +  +E + 
Sbjct: 440 ALENILKMGEADKEARG 456

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 59/349 (16%), Positives = 120/349 (34%), Gaps = 23/349 (6%)

Query: 139 LSVAGSSTDAEATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNI 198
           ++   S+              +  L  G +E K +A+ +L     +       V+  + +
Sbjct: 147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 206

Query: 199 AALVQLLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPLIRLVESGSTVGKEKA 257
             ++ L  +  P +       + +L        +W V    LP L +L+ S  T     A
Sbjct: 207 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 266

Query: 258 -TISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEV-RQML 315
                       E  +A++     + L+E+     ++ Q  A   + NI    ++  Q++
Sbjct: 267 CWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 326

Query: 316 AEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPL 375
              G++  +  LL        K+ A   + N+TA N    ++V+    I  L+  L+   
Sbjct: 327 INAGVLPALRLLLSSPKE-NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 385

Query: 376 PQ--ESAVGALRNLVGSVSQ-----EVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC 428
            +  + A  A+ N      Q       L+S G    L  +L+       +    AL  + 
Sbjct: 386 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 445

Query: 429 TSAEM------------KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
              E                + +AG    +    + + + + E A + I
Sbjct: 446 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 38/250 (15%), Positives = 80/250 (32%), Gaps = 7/250 (2%)

Query: 233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDS 292
           ++S+ + P      ++     +E A   L  L  + + A       G+  L+       +
Sbjct: 13  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 72

Query: 293 --VSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTAS 350
             +   AA         V  +++ +   G +  +++LLD       +  A   +  L   
Sbjct: 73  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 132

Query: 351 NENLRRSVVSEGGIRSL--LAYLDGPLPQESAVGALRNLV--GSVSQEVLISLGFFPRLV 406
            E      +   G   L           +  +   L+NL+      +  L S+G   +LV
Sbjct: 133 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 192

Query: 407 HVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAI 465
            +++       +    ALC + T   +  +   E       +     +     E   + +
Sbjct: 193 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL 252

Query: 466 SSLVTLPQNC 475
                L Q C
Sbjct: 253 EFCEKLLQTC 262

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 5/229 (2%)

Query: 187 KNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLI-RL 245
           K+ L V+ +       +   A   + RE  + ++  L E+            +  L+ R 
Sbjct: 8   KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 67

Query: 246 VESGSTVGKEKATISLQRLSMSAEMAR-AIVGHGGVRPLIEICQTGDSVS-QAAAACTLK 303
           +E+G+   + +A   +   S +    +  ++G G +R L+ +       + +  A   + 
Sbjct: 68  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127

Query: 304 NISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGG 363
            +    E   +         ++       +   K  +A  LQNL   +   + ++ S G 
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187

Query: 364 IRSLLAYLDGPLP--QESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK 410
           ++ L+A +        E  +GAL +LV    Q V         L  +L+
Sbjct: 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR 236

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 1/111 (0%)

Query: 403 PRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAG-CTPLLIKLLEAKPNSVREVA 461
           P      +A     ++ A   L  +C + +      +      L+ + LEA    +R  A
Sbjct: 20  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79

Query: 462 AQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS 512
           AQ I +        +E      ++  L++LLD    +T +  A+  ++ L 
Sbjct: 80  AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 60/334 (17%), Positives = 107/334 (32%), Gaps = 21/334 (6%)

Query: 153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRI 212
            G     ++ L   H     +A+ +L     +       V+    I  L+ LL       
Sbjct: 98  GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLST 157

Query: 213 REKTVTVICSLAESGSCEN------WLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM 266
                    +   S  C N          E +LP L+RL+          +  ++  L+ 
Sbjct: 158 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 217

Query: 267 SAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLA--EEGIVSVM 324
                  +V   GV P +        +     A             Q     + G ++V 
Sbjct: 218 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF 277

Query: 325 IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVG 382
             LL        KE     + N+TA  ++  + VV+ G +  L+  L       Q+ A  
Sbjct: 278 PSLLTNPKTNIQKEAT-WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 336

Query: 383 ALRNLVGSVSQE---VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAE------- 432
           A+ N     + E    L+  G    L+++L A      Q    A+  +  +AE       
Sbjct: 337 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 396

Query: 433 MKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAIS 466
           +  ++ E G    +  L   +  SV + +   I 
Sbjct: 397 LSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 277 HGGVRPLIEICQTGDSVSQAAAACTLKNISAVP--EVRQMLAEEGIVSVMIKLLDCGILL 334
           +  V  +++   + +  SQ  A    + + +         +   G++   +  L      
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 335 GSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLP--QESAVGALRNLVGSVS 392
             +  +A  L N+ +      ++VV  G I + ++ L  P     E AV AL N+ G  S
Sbjct: 72  PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 393 Q--EVLISLGFFPRLVHVL-----KAGSLGAQQAAASALCRVCTSAEM-KKLVGEAGCTP 444
              +++I  G    L+ +L        + G  +     L  +C +      L       P
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191

Query: 445 LLIKLLE 451
            L++LL 
Sbjct: 192 TLVRLLH 198

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 65/295 (22%), Positives = 108/295 (36%), Gaps = 17/295 (5%)

Query: 223 LAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRL--SMSAEMARAIVGHGGV 280
           +A+ GS  N       +  +++ + S +   + +AT + ++L           I+  G +
Sbjct: 1   MADIGS--NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 58

Query: 281 RPLIEICQTGDSVS-QAAAACTLKNI-SAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKE 338
              +      D    Q  +A  L NI S   E  + + + G +   I LL         E
Sbjct: 59  PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISE 117

Query: 339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVS------ 392
            A   L N+       R  V+  G I  LLA L  P     A G LRNL  ++S      
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177

Query: 393 ---QEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMK-KLVGEAGCTPLLIK 448
                +       P LV +L          +  A+  +      + ++V + G  P L+K
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237

Query: 449 LLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKY 503
           LL A    +   A +AI ++VT      +   D  ++     LL     N  K+ 
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 78/513 (15%), Positives = 165/513 (32%), Gaps = 52/513 (10%)

Query: 51   LEQIPSHLSDLSSHPCFSKNALCREQLQAVSKTLKEAIELAELCVKEKYEGKLRMQSDLD 110
             +Q+   +  L     F      ++      K LK A    E+  +        + +  D
Sbjct: 540  TQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD 599

Query: 111  ALSGKLDLNLHDCGLLIKTGVLGEATLP----LSVAGSSTDAEATTHGNTRELLARLQIG 166
             L   L   L      +K  +    T+     ++ +    D           L + L+  
Sbjct: 600  NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN 659

Query: 167  HLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAES 226
                K   L +L   +K    ++ A M  + +  L  L++ +   + +  ++ + +LA+ 
Sbjct: 660  QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 719

Query: 227  GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEI 286
                   +S  +L  LI LV S    G   + +     ++       +     +R L   
Sbjct: 720  YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP 779

Query: 287  C----------QTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILL-- 334
                       Q+  S+++  AA T       P V     ++   S     +    LL  
Sbjct: 780  VYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 839

Query: 335  ----------GSKEYAAECLQNLTASNENLRRSVVSEGG----------IRSLLAYLDG- 373
                      G  E  +  L+  ++ +E ++ +     G          +  +L  +   
Sbjct: 840  GEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQ 899

Query: 374  PLPQESAVGALRNLVGSVSQEVLISL--GFFPRLVHVLKAGSLGAQQAAASALCRVCTSA 431
            P  Q   + +L+ ++ S S   L       +  L+   +    G +   A  L ++    
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 959

Query: 432  EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV-TLPQNCREVKRDDKSVPNLVQ 490
                L       P L   L +  +  R     A+   +   PQ    + ++   + + ++
Sbjct: 960  PETLL-------PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLK 1010

Query: 491  LL-DPSPQNTAKKYAVACLASLSPSARKLLERL 522
             L DP      ++ A+    S + +   L+  L
Sbjct: 1011 TLEDPDLNV--RRVALVTFNSAAHNKPSLIRDL 1041

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 337 KEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQ--ESAVGALRNLVGSVSQE 394
           +E A   L+ L    E   +       I  +LA    P      + +  +  L     Q+
Sbjct: 458 REAATSNLKKLV---EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514

Query: 395 VLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKP 454
           +       P ++ +        +   A +L ++    +   L  E    P+L KL + + 
Sbjct: 515 ITTKH-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV--KPILEKLTQDQD 571

Query: 455 NSVREVAAQAISSL 468
             V+  A +A++ L
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKK 435
            +E+A   L+ LV    +E   +    P+++ +    +   +      +  +        
Sbjct: 457 IREAATSNLKKLVEKFGKEWAHAT-IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515

Query: 436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLL-DP 494
                   P ++++      +VR   A+++  +  +  N        +  P L +L  D 
Sbjct: 516 TTKHM--LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQ 570

Query: 495 SPQNTAKKYAVACLASLS 512
                 K +A   L  LS
Sbjct: 571 DVD--VKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.76
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.47
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.33
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.29
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.14
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.12
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.11
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.07
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.81
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.81
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.78
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.77
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.71
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.49
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.43
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.36
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.22
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.07
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.02
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.79
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.82
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.45
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.34
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.92
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	89.5
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	88.37
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	83.22
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	82.92

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.2e-29  Score=257.42  Aligned_cols=364  Identities=17%  Similarity=0.214  Sum_probs=308.0

Q ss_pred             hhhhhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-hHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcC
Q 009471          149 EATTHGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAES  226 (534)
Q Consensus       149 ~~~~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~  226 (534)
                      .+...+.|++++..+++++++.+..|+..+.+++..+.. ....+++.|+++.|+++|++. ++++|..|+++|.+++..
T Consensus         8 ~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~   87 (434)
T d1q1sc_           8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG   87 (434)
T ss_dssp             TSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS
T ss_pred             cchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            344567799999999999999999999999998754332 245677889999999999765 589999999999999876


Q ss_pred             Cc-hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCCh-----HHHHHHH
Q 009471          227 GS-CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDS-----VSQAAAA  299 (534)
Q Consensus       227 ~~-~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~-----~~~~~a~  299 (534)
                      .+ .+..+++.|+++.++.+|.+++..+++.|+++|.+++.+. +.+..+...|+++.|+.++...+.     .....++
T Consensus        88 ~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            64 7889999999999999999999999999999999998764 556678889999999999986543     3456778


Q ss_pred             HHHHHccCCch-HHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--Cch
Q 009471          300 CTLKNISAVPE-VRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLP  376 (534)
Q Consensus       300 ~aL~nLa~~~~-~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~  376 (534)
                      +++.+++.+.. ........++++.++.++.++++ +++..++.+|.+++..++.....+...|+++.+++++.+  +.+
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~  246 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI  246 (434)
T ss_dssp             HHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred             HHHHHHhhcccccchhhhhhhHHHHHHHHHhcccc-chhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhh
Confidence            88999988653 33334457789999999988886 899999999999999888888888899999999999976  567


Q ss_pred             HHHHHHHHHHhhc-C-ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCC
Q 009471          377 QESAVGALRNLVG-S-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAK  453 (534)
Q Consensus       377 ~~~a~~aL~~La~-~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~  453 (534)
                      +..++.+|.+++. . .....+.+.|+++.++.++++.+++++..|+++|.+++.+ ++....+.+.|+++.+++++.+.
T Consensus       247 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~  326 (434)
T d1q1sc_         247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA  326 (434)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS
T ss_pred             hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc
Confidence            8999999999998 2 3456778899999999999999999999999999999965 77888899999999999999999


Q ss_pred             ChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          454 PNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       454 ~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      ++.++..|+++|.+++.... .....+.+.|.++.|+++++.+ ++.++..++.+|.++...
T Consensus       327 ~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         327 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            99999999999999985533 2333344579999999999887 456788899999888653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-29  Score=266.13  Aligned_cols=359  Identities=18%  Similarity=0.189  Sum_probs=308.1

Q ss_pred             hchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHh-cCCcHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchh
Q 009471          153 HGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVM-GRSNIAALVQLLTA-TSPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~-~~g~v~~Lv~lL~~-~~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      ...||.|+..|++++.+.+..|+..+.+++..++ .+..++ ..|+++.|+++|++ +++++++.|+.+|.+++.+++.+
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccH-HHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            4569999999999999999999999999987544 444444 44679999999976 46899999999999999988899


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      ..+++.|+++.|+++|+++++.++..|+++|.+++.+.+. +..+.+.|+++.|+.++.++++.++..++.+|.+++..+
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999887554 566778999999999999999999999999999999754


Q ss_pred             -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                       +.+..+.+.|+++.++.++.+.+...++..+..++.+++. ++.++..+++.|+++.|..++.+  +.++..+++++.+
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~  253 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHh
Confidence             6777888899999999999877765789999999999987 56778889999999999999976  4578899999999


Q ss_pred             hhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhc--CCChHHHHHHHH
Q 009471          387 LVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLE--AKPNSVREVAAQ  463 (534)
Q Consensus       387 La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~--~~~~~v~~~A~~  463 (534)
                      ++.... ......++++.|++++.++++.++..|+++|++++.+ ++++..+.+.|+++.|+.++.  ++.+++++.+..
T Consensus       254 ls~~~~-~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~  332 (529)
T d1jdha_         254 LSDAAT-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHTTCT-TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccc-chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHH
Confidence            986211 1222357899999999999999999999999999864 788889999999999999885  567889999999


Q ss_pred             HHHHhcCCCcch---HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          464 AISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       464 aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      +|.+++......   ...+...++++.|+.++.+..+...+..+..++.+++.+
T Consensus       333 aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~  386 (529)
T d1jdha_         333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh
Confidence            999998665432   334556799999999998876556888999999999876

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-28  Score=257.60  Aligned_cols=357  Identities=20%  Similarity=0.236  Sum_probs=305.7

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CENW  232 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~~  232 (534)
                      ..++.|+..|++++++.+..|+.+|.+++.+++..+..+.+.|+++.|+.+|++++++++..++.+|.+++..++ .+..
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence            458999999999999999999999999999888888888899999999999999999999999999999997665 7888


Q ss_pred             HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHcc----------------------
Q 009471          233 LVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQT----------------------  289 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~----------------------  289 (534)
                      +...|+++++++++... ...+++.+++++.+++.+++++..+.+.|+++.|+.++.+                      
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~  260 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc
Confidence            88999999999999765 5678999999999999988888888888877777766654                      


Q ss_pred             -----------------CChHHHHHHHHHHHHccCCc-hHHHHHHhhCcHHHHHHHhh-cCCChhHHHHHHHHHHHHccC
Q 009471          290 -----------------GDSVSQAAAACTLKNISAVP-EVRQMLAEEGIVSVMIKLLD-CGILLGSKEYAAECLQNLTAS  350 (534)
Q Consensus       290 -----------------~~~~~~~~a~~aL~nLa~~~-~~~~~i~e~g~i~~L~~ll~-~~~~~~v~~~a~~~L~~La~~  350 (534)
                                       +++.++..++++|+|++.++ +++..+.+.++++.++.++. ..+..++++.++.+|.+++..
T Consensus       261 ~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~  340 (529)
T d1jdha_         261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch
Confidence                             34566778888999998744 77788888999999999884 333347899999999999975


Q ss_pred             Ch---HHHHHHHhcCChHHHHHhhcCC---chHHHHHHHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCH---------
Q 009471          351 NE---NLRRSVVSEGGIRSLLAYLDGP---LPQESAVGALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSL---------  414 (534)
Q Consensus       351 ~~---~~~~~i~~~g~l~~L~~~L~~~---~~~~~a~~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~---------  414 (534)
                      .+   ..+..+...++++.++.++.++   ..+..+++++++++. +.+...+.+.|+++.|++++.+.+.         
T Consensus       341 ~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~  420 (529)
T d1jdha_         341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG  420 (529)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             hhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhh
Confidence            43   3566777899999999999763   367889999999998 6777889999999999999965433         


Q ss_pred             -------------HHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhh
Q 009471          415 -------------GAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRD  481 (534)
Q Consensus       415 -------------~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~  481 (534)
                                   ++.+.++.++..++..++.+..+.+.|+++.|+++++++++.++..|+.+|++|+.++.+++.+. +
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~-~  499 (529)
T d1jdha_         421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE-A  499 (529)
T ss_dssp             -----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHH-H
T ss_pred             hhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHH-H
Confidence                         45667788899999888899999999999999999999999999999999999987766665554 5


Q ss_pred             CCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          482 DKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       482 ~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      .|+++.|+++++++ ++.++..|..+|.+|+
T Consensus       500 ~g~~~~L~~Ll~s~-n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         500 EGATAPLTELLHSR-NEGVATYAAAVLFRMS  529 (529)
T ss_dssp             TTCHHHHHHGGGCS-SHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHhCCC-CHHHHHHHHHHHHHhC
Confidence            79999999999886 5589999999999885

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-27  Score=250.84  Aligned_cols=360  Identities=17%  Similarity=0.205  Sum_probs=308.4

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCc-
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGS-  228 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~-  228 (534)
                      ....++.++..+.+++.+.+..|+..+.+++.. .......+++.|+++.|+++++.+ ++.++..|+++|.+++...+ 
T Consensus        74 ~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~  153 (503)
T d1wa5b_          74 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  153 (503)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence            345689999999999999999999999998743 333456778899999999999864 58899999999999998765 


Q ss_pred             hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          229 CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       229 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                      ....+...|+++.++.+|.+++.++++.++++|++++.+ ++.+..+...|+++.|+.++.+.++.++..++++|+|++.
T Consensus       154 ~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         154 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhc
Confidence            677888999999999999999999999999999999875 6678888999999999999999999999999999999998


Q ss_pred             Cc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHH
Q 009471          308 VP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGAL  384 (534)
Q Consensus       308 ~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL  384 (534)
                      .. .........++++.++.++.+.+. +++..++++|.+++..++.....+++.|+++.++.++.+  +.++..++.++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l  312 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  312 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHH
Confidence            65 333334457899999999998886 899999999999999888888889999999999999976  56789999999


Q ss_pred             HHhhcC--ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcCchHHHHHhhcCCChHHHHHH
Q 009471          385 RNLVGS--VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAGCTPLLIKLLEAKPNSVREVA  461 (534)
Q Consensus       385 ~~La~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A  461 (534)
                      ++++..  .....+.+.|+++.|..++.+.++.++..++|+|.+++. +++....+.+.|+++.+++++.+.+.+++..|
T Consensus       313 ~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a  392 (503)
T d1wa5b_         313 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  392 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence            999982  334567789999999999999999999999999999986 47888899999999999999999999999999


Q ss_pred             HHHHHHhcCCCcc---hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          462 AQAISSLVTLPQN---CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       462 ~~aL~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      +++|.+++....+   ....+-+.|.++.|+.+|+..+ ..+...++.+|.++-.
T Consensus       393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d-~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence            9999999854322   2233345799999999998874 4666777888887754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-27  Score=245.15  Aligned_cols=355  Identities=18%  Similarity=0.242  Sum_probs=302.3

Q ss_pred             chHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhH
Q 009471          154 GNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CEN  231 (534)
Q Consensus       154 ~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~~  231 (534)
                      ..++.|++.|+. ++++.+..|+.+|.+++..+++.+..+++.|+++.|+++|+++++++++.|+++|++++.+.+ .+.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~  135 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD  135 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHH
Confidence            358999999964 467889999999999999888888899999999999999999999999999999999998775 788


Q ss_pred             HHHhcCCHHHHHHHHccCCH-----HHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHc
Q 009471          232 WLVSEGVLPPLIRLVESGST-----VGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNI  305 (534)
Q Consensus       232 ~l~~~g~i~~Lv~lL~~~~~-----~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nL  305 (534)
                      .+.+.|+++.++.++...+.     .....+++++.+++.+... .......++++.|+.++.+++++++..++++|.++
T Consensus       136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l  215 (434)
T d1q1sc_         136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL  215 (434)
T ss_dssp             HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhccc
Confidence            89999999999999987533     3456788889999876543 22333466789999999999999999999999999


Q ss_pred             cCCc-hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHH
Q 009471          306 SAVP-EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVG  382 (534)
Q Consensus       306 a~~~-~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~  382 (534)
                      +..+ +....+.+.|+++.+++++.+++. .++..++.+|.+++.+++..+..+++.|+++.+..++++  ++++..+++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~-~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~  294 (434)
T d1q1sc_         216 TDGPNERIEMVVKKGVVPQLVKLLGATEL-PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW  294 (434)
T ss_dssp             TSSCHHHHHHHHTTTCHHHHHHHHTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred             chhhhhhHHHHhhcccchhcccccccchh-hhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHH
Confidence            9866 555666779999999999998886 899999999999999888888899999999999999987  568999999


Q ss_pred             HHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC--ChhHHHHHHhcCchHHHHHhhcCCChHHH
Q 009471          383 ALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT--SAEMKKLVGEAGCTPLLIKLLEAKPNSVR  458 (534)
Q Consensus       383 aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~--~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~  458 (534)
                      +|.+++.  ......+.+.|+++.++.++.+.++.++..|+++|.+++.  +++....+.+.|+++.|++++++++++++
T Consensus       295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~  374 (434)
T d1q1sc_         295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII  374 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHH
T ss_pred             HHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence            9999997  3445667789999999999999999999999999999985  46778889999999999999999999999


Q ss_pred             HHHHHHHHHhcCC------CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHh
Q 009471          459 EVAAQAISSLVTL------PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS  510 (534)
Q Consensus       459 ~~A~~aL~~L~~~------~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~  510 (534)
                      ..++++|.+|...      .......+.+.|+++.+-.+.+++ ++++++.|...|-+
T Consensus       375 ~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~-n~~i~~~a~~il~~  431 (434)
T d1q1sc_         375 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE-NESVYKASLNLIEK  431 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            9999999988631      222345566789999876665554 66788888887754

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.4e-27  Score=247.72  Aligned_cols=356  Identities=16%  Similarity=0.220  Sum_probs=307.1

Q ss_pred             hchHHHHHHHHhc-CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh
Q 009471          153 HGNTRELLARLQI-GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS-CE  230 (534)
Q Consensus       153 ~~~i~~Ll~~L~~-~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~-~~  230 (534)
                      ...++.|+..++. .+.+.+..|+..|.+++..++.....+...|+++.++.+|.+++.++++.|+++|++++.+.+ .+
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            3468899999975 467789999999999999888888888899999999999999999999999999999998764 89


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      ..+.+.|++++|+.++.+.+..++..++++|.+++.+.+. .......++++.|+.++.+++++++..++++|.+++..+
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999999976544 333445788999999999999999999999999999855


Q ss_pred             -hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHH
Q 009471          310 -EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRN  386 (534)
Q Consensus       310 -~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~  386 (534)
                       +....+.+.|+++.++.++.+++. .++..++.++++++.+++.....+.+.|+++.+..++++  +.++..++++|.|
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll~~~~~-~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  356 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhcccCCch-hhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             566778899999999999998886 899999999999999888888888899999999999987  5578999999999


Q ss_pred             hhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----hhHHHHHHhcCchHHHHHhhcCCChHHHHH
Q 009471          387 LVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS----AEMKKLVGEAGCTPLLIKLLEAKPNSVREV  460 (534)
Q Consensus       387 La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~----~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~  460 (534)
                      ++.  +.....+.+.++++.++.++.+++..++..|+++|.+++.+    ++....+.+.|+++.|++++...+.++...
T Consensus       357 l~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~  436 (503)
T d1wa5b_         357 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV  436 (503)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred             HhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHH
Confidence            987  34556778899999999999999999999999999999842    466788889999999999999999999999


Q ss_pred             HHHHHHHhcCCC-----------cchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHh
Q 009471          461 AAQAISSLVTLP-----------QNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLAS  510 (534)
Q Consensus       461 A~~aL~~L~~~~-----------~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~  510 (534)
                      ++.+|.++....           ......+.+.|++..+..+.++. ++.+.+.|...|..
T Consensus       437 ~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~-~~~i~~~A~~il~~  496 (503)
T d1wa5b_         437 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE-NDKIYEKAYKIIET  496 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            999999886321           12334566788888876665554 55788888877754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=234.57  Aligned_cols=357  Identities=18%  Similarity=0.207  Sum_probs=277.0

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-chhHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG-SCENWL  233 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-~~~~~l  233 (534)
                      .||.|+..|++++++.+..|+.+|.+++.++++++..+.+.|+|+.|+++|+++++++|..|+.+|.+|+.++ +++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999665 488999


Q ss_pred             HhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHH----------------ccCChHHHH
Q 009471          234 VSEGVLPPLIRLVES-GSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEIC----------------QTGDSVSQA  296 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll----------------~~~~~~~~~  296 (534)
                      .+.|+++.++.++.. .++.++..++++|.+++.++.....+...|+ +.++..+                ...++.++.
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            999999999999875 5788999999999999998777666555443 4333332                234678899


Q ss_pred             HHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCC-----ChhHHHHHHHHHHHHccC--------------------
Q 009471          297 AAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGI-----LLGSKEYAAECLQNLTAS--------------------  350 (534)
Q Consensus       297 ~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~-----~~~v~~~a~~~L~~La~~--------------------  350 (534)
                      .++++|.+++..++++..+.. .|+++.++.++.+..     .......+...+.+....                    
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            999999999999888877765 788999998885321     001222222222221110                    


Q ss_pred             ------------------------------ChHHHHHHHhcCChHHHHHhhcC---CchHHHHHHHHHHhhc-Cc-----
Q 009471          351 ------------------------------NENLRRSVVSEGGIRSLLAYLDG---PLPQESAVGALRNLVG-SV-----  391 (534)
Q Consensus       351 ------------------------------~~~~~~~i~~~g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~-----  391 (534)
                                                    +......+...++++.++.++..   +..++.+.+++.+++. ..     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                          00011111223445666666532   5678889999999986 21     


Q ss_pred             -cHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcC------CChHHHHHHHHH
Q 009471          392 -SQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA------KPNSVREVAAQA  464 (534)
Q Consensus       392 -~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~A~~a  464 (534)
                       ....+.+.++++.|+.++.++++.++..+++++.+++.+++.+..+.+ ++++.|+.++..      .+++++..++.+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence             233455689999999999999999999999999999999888888765 569999999853      236799999999


Q ss_pred             HHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          465 ISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       465 L~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      |.+++.. +.+++.+. +.|+++.|++++.+.+++.+++.|..+|.+|..+
T Consensus       401 L~~l~~~~~~~~~~l~-~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYF-SSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHTTCTHHHHHHC-CHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHhcCCHHHHHHHH-HCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            9999955 45555555 5789999999998765667889999999999754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-22  Score=201.50  Aligned_cols=319  Identities=18%  Similarity=0.181  Sum_probs=243.8

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhc-ChhhHHH
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAES-GSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSM-SAEMARA  273 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~-~~~~~~~  273 (534)
                      +.||.|+++|+++++++|..|+++|++++.+ +++|..+++.|++++|+++|++++++++..|+++|.+|+. +++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3589999999999999999999999999975 5599999999999999999999999999999999999985 5777889


Q ss_pred             HHhCCChHHHHHHHcc-CChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhh--------------cCCChhHHH
Q 009471          274 IVGHGGVRPLIEICQT-GDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLD--------------CGILLGSKE  338 (534)
Q Consensus       274 l~~~g~i~~Lv~ll~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~--------------~~~~~~v~~  338 (534)
                      +.+.|+++.|+.++.. .++.++..++++|++++..+..+..+...|+.+.+..++.              ......++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999998864 6788999999999999998877777666554444433321              222337899


Q ss_pred             HHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--------CchHHHHHHHHHHhhc---------------------
Q 009471          339 YAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--------PLPQESAVGALRNLVG---------------------  389 (534)
Q Consensus       339 ~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--------~~~~~~a~~aL~~La~---------------------  389 (534)
                      .++.++.+++..++..+..+...|+++.+++++.+        ......+...+.+...                     
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            99999999998555444444456778888887742        1111122211111100                     


Q ss_pred             -------------------------------CccHHHHHhcCcHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCh------
Q 009471          390 -------------------------------SVSQEVLISLGFFPRLVHVLKA-GSLGAQQAAASALCRVCTSA------  431 (534)
Q Consensus       390 -------------------------------~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~A~~aL~~la~~~------  431 (534)
                                                     ......+...++++.++.++.. .++.++..+.+++.+++...      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                           0111222334567778887754 56899999999999998641      


Q ss_pred             hHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCC-----CchhHHHHHHH
Q 009471          432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPS-----PQNTAKKYAVA  506 (534)
Q Consensus       432 ~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-----~~~~~k~~a~~  506 (534)
                      ..+..+.+.|+++.|+++++++++.++..++.+|.+|+.++.++..+..  ++++.|+.+|...     ++.+++..++.
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence            2345566789999999999999999999999999999988888776654  6899999998653     23458889999


Q ss_pred             HHHhhchhHH
Q 009471          507 CLASLSPSAR  516 (534)
Q Consensus       507 ~L~~L~~~~k  516 (534)
                      +|.+|+.+..
T Consensus       400 ~L~~l~~~~~  409 (457)
T d1xm9a1         400 TVRNLMASQP  409 (457)
T ss_dssp             HHHHHHTTCT
T ss_pred             HHHHHhcCCH
Confidence            9999986633

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.9e-18  Score=161.42  Aligned_cols=194  Identities=18%  Similarity=0.196  Sum_probs=172.2

Q ss_pred             cCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCc-hhHHHHhcCCHHHH
Q 009471          165 IGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQ-LLTATSPRIREKTVTVICSLAESGS-CENWLVSEGVLPPL  242 (534)
Q Consensus       165 ~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~v~~~A~~~L~~La~~~~-~~~~l~~~g~i~~L  242 (534)
                      +.+.+.+..|+..|.+++. +.++...+...||+++++. +++++++++|..|+.+|++++.+++ .+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4567889999999999995 5667788889999999986 7888999999999999999998765 78889999999999


Q ss_pred             HHHHcc-CCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-CchHHHHHHhhC
Q 009471          243 IRLVES-GSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-VPEVRQMLAEEG  319 (534)
Q Consensus       243 v~lL~~-~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-~~~~~~~i~e~g  319 (534)
                      ++++.+ .++.++..++++|.+++.+ ++++..+...||++.|+.++.++++.++..++++|++++. .++.+..+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999975 5788999999999999876 5567788899999999999999999999999999999986 568899999999


Q ss_pred             cHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471          320 IVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS  360 (534)
Q Consensus       320 ~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (534)
                      +++.|++++.+++. .+++.++.+|.+|+..++.....+..
T Consensus       187 ~v~~L~~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         187 MVQQLVALVRTEHS-PFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHHTSCCS-THHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999887 89999999999999988776655553

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.3e-18  Score=160.02  Aligned_cols=187  Identities=19%  Similarity=0.193  Sum_probs=167.4

Q ss_pred             cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHH-HhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHH
Q 009471          289 TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIK-LLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSL  367 (534)
Q Consensus       289 ~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~-ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L  367 (534)
                      ..+.+.+..|+.+|.+++.+.+++..+...|+++.++. ++.+++. +++..|+.+|++++.+++..+..+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~-~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA-GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            34667888999999999998899999999999999886 5566665 899999999999999999999999999999999


Q ss_pred             HHhhcC---CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC-ChhHHHHHHhcC
Q 009471          368 LAYLDG---PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT-SAEMKKLVGEAG  441 (534)
Q Consensus       368 ~~~L~~---~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~-~~~~~~~i~~~g  441 (534)
                      ++++.+   +.++..++++|.+++.  +.....+...|+++.|+++++++++.++..++++|.+++. +++.+..+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999953   5589999999999998  4556678899999999999999999999999999999985 588999999999


Q ss_pred             chHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchH
Q 009471          442 CTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCR  476 (534)
Q Consensus       442 ~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~  476 (534)
                      +++.|+.+++++++++++.|+.+|.+|+...++..
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~  221 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  221 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999997665543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-12  Score=136.04  Aligned_cols=340  Identities=13%  Similarity=0.127  Sum_probs=238.2

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CENW  232 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~~~  232 (534)
                      .++.+...++..+..+|..++..|..++..-+.   .......++.+..+++++++++|..|+..+..++..-.  ....
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~  319 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN  319 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            455555666677788888888888887643221   12233678999999999999999999999999887532  3344


Q ss_pred             HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCchHH
Q 009471          233 LVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVR  312 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~  312 (534)
                      ..-..+++.+...+++.+..++..++.++..++..-.....  ....++.+..+++++++.++..+..++..+...-.. 
T Consensus       320 ~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~--~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-  396 (588)
T d1b3ua_         320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT--IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-  396 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH--HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-
T ss_pred             hhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-
Confidence            44456788999999999999999998888777542211111  123468889999999999998888777665532111 


Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcC
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGS  390 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~  390 (534)
                      .. .....++.+.+++.+.++ .++..++.++..++....   ...+.....+.+..++.+  ..+|..|+.+|+.|+..
T Consensus       397 ~~-~~~~ll~~l~~~~~d~~~-~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~  471 (588)
T d1b3ua_         397 RQ-LSQSLLPAIVELAEDAKW-RVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK  471 (588)
T ss_dssp             HH-HHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHC---GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             hh-hhhHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcC---hHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence            11 123467888888888876 899999999998875210   011122235556667766  46899999999999873


Q ss_pred             ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          391 VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       391 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      ...+. ....+++.+..++.+.+...|..++.++..+...  ..........+|.|.+++.++.+.+|..++.+|..+..
T Consensus       472 ~~~~~-~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~--~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         472 FGKEW-AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HCHHH-HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             hCcHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--cChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            22222 2334788888888999999999999999988742  12222334579999999999999999999999999976


Q ss_pred             CCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhc
Q 009471          471 LPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLS  512 (534)
Q Consensus       471 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~  512 (534)
                      ..++. .+..  ...+.+.++++ +++.++|.+|..+|..|+
T Consensus       549 ~~~~~-~~~~--~i~~~l~~L~~-D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         549 ILDNS-TLQS--EVKPILEKLTQ-DQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             GSCHH-HHHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTT
T ss_pred             HcCcH-hHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence            55442 2222  23344555544 456789999999998875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.7e-11  Score=124.48  Aligned_cols=300  Identities=16%  Similarity=0.125  Sum_probs=189.5

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHH
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWL  233 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l  233 (534)
                      ..++.+...++..++.+|..++..+..++..-+..   ......++.+..+++++++.+|..|+.++..++..-+..  -
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~  238 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH---HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--H
Confidence            34556666778889999999999999998753321   222356788889999999999999999999998654321  1


Q ss_pred             HhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC--chH
Q 009471          234 VSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PEV  311 (534)
Q Consensus       234 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~~  311 (534)
                      ....+++.+..++++.+..++..++.+|.++...-..  .......++.+..++.++++.++..++..+..++..  .+.
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~  316 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            1233688999999999999999999999998653221  122234568899999999999999999999887753  233


Q ss_pred             HHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          312 RQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       312 ~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      .....-..+++.+...+.+.+. .++..++.++..++..   ..........++.+...+.+  ++++..+...+..+..
T Consensus       317 ~~~~~~~~i~~~l~~~~~d~~~-~vr~~~~~~l~~~~~~---~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~  392 (588)
T d1b3ua_         317 RENVIMSQILPCIKELVSDANQ-HVKSALASVIMGLSPI---LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCH-HHHHHHHTTGGGGHHH---HCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHhhhhhc---cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence            3333345678888888887775 7888877777666531   11111122345666666654  3455555555555543


Q ss_pred             CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHH
Q 009471          390 SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISS  467 (534)
Q Consensus       390 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~  467 (534)
                      ......+ ...+++.+..++.+.++.++..++..+..++..  .+.    ......+.+..++.+....+|..|+.+|..
T Consensus       393 ~~~~~~~-~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         393 VIGIRQL-SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             HSCHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             hcchhhh-hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence            1111111 123455566666666666666666666655421  110    001123444444455555555555555555


Q ss_pred             hc
Q 009471          468 LV  469 (534)
Q Consensus       468 L~  469 (534)
                      |+
T Consensus       468 l~  469 (588)
T d1b3ua_         468 LV  469 (588)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=4.1e-09  Score=98.84  Aligned_cols=253  Identities=14%  Similarity=0.060  Sum_probs=183.6

Q ss_pred             CCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009471          195 RSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAI  274 (534)
Q Consensus       195 ~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l  274 (534)
                      ....+.|+++|+++++.+|..|+.+|..+..          ...++.++++++++++.++..|+.+|..+..........
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence            3567889999999999999999999988753          124899999999999999999999999997654433322


Q ss_pred             HhCCChHHHH-HHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH
Q 009471          275 VGHGGVRPLI-EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN  353 (534)
Q Consensus       275 ~~~g~i~~Lv-~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~  353 (534)
                      .     +.+. .++.++++.++..++.+|.++.......    ....++.+...+.+.+. .++..++.++..+..    
T Consensus        88 ~-----~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~~~~----  153 (276)
T d1oyza_          88 F-----NILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKST-NVRRATAFAISVIND----  153 (276)
T ss_dssp             H-----HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC------
T ss_pred             H-----HHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcch-HHHHHHHHHHhhcch----
Confidence            1     3333 4567889999999999999887533211    12346677777777665 788888887776542    


Q ss_pred             HHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCCh
Q 009471          354 LRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSA  431 (534)
Q Consensus       354 ~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~  431 (534)
                             ...++.+..++.+  +.++..+..++..+....       ....+.++..+...+..++..+..++..+..  
T Consensus       154 -------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--  217 (276)
T d1oyza_         154 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--  217 (276)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred             -------HHHHHHHHHhcccccchhhhhHHHHHHhhhccc-------cccchhhhhhhhhhhhhhhhhhccccchhhh--
Confidence                   2446667777755  445666666666655421       1245667777888899999999999887642  


Q ss_pred             hHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHH
Q 009471          432 EMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (534)
Q Consensus       432 ~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L  508 (534)
                              ...++.|++.+.+  +.++..+..+|..+.           +...++.|..+|..+++..++.+|+..|
T Consensus       218 --------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         218 --------KRVLSVLCDELKK--NTVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             --------GGGHHHHHHHHTS--SSCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             --------hhhHHHHHHHhCC--hHHHHHHHHHHHHcC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence                    3468888888874  458889999998883           2357788888887765667888888776

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.4e-08  Score=95.11  Aligned_cols=253  Identities=14%  Similarity=0.100  Sum_probs=186.8

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhH
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCEN  231 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~  231 (534)
                      .......|+..|.++++.+|..|+..|..+-  ++         ..++.|+++++++++.+|..|+.+|..+........
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence            3455778999999999999999999998763  22         458999999999999999999999999976554333


Q ss_pred             HHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHhhcChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc
Q 009471          232 WLVSEGVLPPLI-RLVESGSTVGKEKATISLQRLSMSAEM-ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP  309 (534)
Q Consensus       232 ~l~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~~Ls~~~~~-~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~  309 (534)
                      .+     ++.+. .++++.++.++..++.+|.++...... ...+     ++.+...+.+.++.++..++.++..+.   
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~-----~~~l~~~~~d~~~~vr~~a~~~l~~~~---  152 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKI-----VEQSQITAFDKSTNVRRATAFAISVIN---  152 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHH-----HHHHHHHhcCcchHHHHHHHHHHhhcc---
Confidence            22     33333 356788999999999999998754322 2222     477888888889999988888887653   


Q ss_pred             hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHh
Q 009471          310 EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNL  387 (534)
Q Consensus       310 ~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~L  387 (534)
                             +...++.+..++...+. .++..+..++..+.......         ++.+...+.+  +.++..+..+++.+
T Consensus       153 -------~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         153 -------DKATIPLLINLLKDPNG-DVRNWAAFAININKYDNSDI---------RDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSH-HHHHHHHHHHHHHTCCCHHH---------HHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             -------hHHHHHHHHHhcccccc-hhhhhHHHHHHhhhcccccc---------chhhhhhhhhhhhhhhhhhccccchh
Confidence                   34567788888877775 77888888888777655433         3345555554  45677777777766


Q ss_pred             hcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhcC-CChHHHHHHHHHHH
Q 009471          388 VGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLEA-KPNSVREVAAQAIS  466 (534)
Q Consensus       388 a~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~A~~aL~  466 (534)
                      ..         ...++.|++.+++.  .++..++++|..+..          .+.++.|.+++.. ++.+++..|.++|.
T Consensus       216 ~~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         216 KD---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TC---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hh---------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            43         34688888888754  588899999998862          3578999988874 57889999988863

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-09  Score=121.25  Aligned_cols=348  Identities=12%  Similarity=0.057  Sum_probs=220.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--chhHHHH
Q 009471          157 RELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESG--SCENWLV  234 (534)
Q Consensus       157 ~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~--~~~~~l~  234 (534)
                      +.+...+++.+...|..|+.+|..++.+..+.....+. ..++.++..++++++.+|..++++|+.++..-  ..... .
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~  475 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-Y  475 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-H
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-h
Confidence            33334556788899999999999988765544332222 46788999999999999999999999987632  11111 2


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhh--HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC--ch
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEM--ARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV--PE  310 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~--~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~--~~  310 (534)
                      -..+++.++..+.+.++.+++.|+++|.++......  ...+  ...++.++..+...+...+..+..++..++..  +.
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~  553 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH  553 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence            345788899999999999999999999998753211  1100  12246677777777777776666666666531  11


Q ss_pred             H-HHHHHhhCcHHHHHHHhhc--CCChhHHHHHHHHHHHHccCC----hHHHHHHHh-------cCChHHHHHhhcC---
Q 009471          311 V-RQMLAEEGIVSVMIKLLDC--GILLGSKEYAAECLQNLTASN----ENLRRSVVS-------EGGIRSLLAYLDG---  373 (534)
Q Consensus       311 ~-~~~i~e~g~i~~L~~ll~~--~~~~~v~~~a~~~L~~La~~~----~~~~~~i~~-------~g~l~~L~~~L~~---  373 (534)
                      . ...+. ...++.+.+....  .++ ......+.++..++...    ......++.       ......+......   
T Consensus       554 ~~~~~~~-~~l~~~l~~~~~~~~~~~-~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  631 (888)
T d1qbkb_         554 LNKPEYI-QMLMPPLIQKWNMLKDED-KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY  631 (888)
T ss_dssp             GCSHHHH-HHHHHHHHHHHTTSCTTC-TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             ccchHHH-HHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            1 11121 2234455554432  122 23445566666665411    111111111       0000111111111   


Q ss_pred             ----CchHHHHHHHHHHhhc--C-ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcCchH
Q 009471          374 ----PLPQESAVGALRNLVG--S-VSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAGCTP  444 (534)
Q Consensus       374 ----~~~~~~a~~aL~~La~--~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g~v~  444 (534)
                          .+....++.++..++.  . .....+....+++.+...+++.++.++..|..+++.++..  +....++  ..+++
T Consensus       632 ~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~  709 (888)
T d1qbkb_         632 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMP  709 (888)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHH
Confidence                2345566777777775  2 2233344466888899999999999999999999988743  3444443  23578


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCC-CchhHHHHHHHHHHhhchh
Q 009471          445 LLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPS-PQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       445 ~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~-~~~~~k~~a~~~L~~L~~~  514 (534)
                      .+.+-+.+....++..|++++..|+.. ..+...++.  ..++.|++.++.. ....++.+++.+|..|+..
T Consensus       710 ~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         710 ILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            888888888889999999999999843 444444444  4678899999765 3345889999999988765

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=9.1e-07  Score=87.10  Aligned_cols=315  Identities=13%  Similarity=0.073  Sum_probs=213.2

Q ss_pred             hHHHHHHHHh-cCCHHHHHHHHHHHHHHhhcChHhHH---HHhcCC--cHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 009471          155 NTRELLARLQ-IGHLEAKHKALDSLVEAMKEDEKNVL---AVMGRS--NIAALVQLLTATSPRIREKTVTVICSLAESGS  228 (534)
Q Consensus       155 ~i~~Ll~~L~-~~~~~~~~~A~~~L~~l~~~~~~~~~---~i~~~g--~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~  228 (534)
                      .+..++..|. ...++.....+.-+.+++.+++....   .+....  .-+++..++..++..+...+...+..++....
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            4677788776 45677777788777788776653211   222212  23456666766677788888888888877654


Q ss_pred             hhHHHHhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhC--CChHHHHHHHcc---------------
Q 009471          229 CENWLVSE--GVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGH--GGVRPLIEICQT---------------  289 (534)
Q Consensus       229 ~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~--g~i~~Lv~ll~~---------------  289 (534)
                      ......+.  .....+-.+...++...+..++.++..|...++.+..+..+  ..++.|+.+++.               
T Consensus       155 ~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~  234 (477)
T d1ho8a_         155 HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNS  234 (477)
T ss_dssp             CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------------
T ss_pred             cccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccC
Confidence            21111111  12333444446678888889999999999999999888653  346777777653               


Q ss_pred             --CChHHHHHHHHHHHHccCCchHHHHHHhh--CcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChH-----HHHHHHh
Q 009471          290 --GDSVSQAAAACTLKNISAVPEVRQMLAEE--GIVSVMIKLLDCGILLGSKEYAAECLQNLTASNEN-----LRRSVVS  360 (534)
Q Consensus       290 --~~~~~~~~a~~aL~nLa~~~~~~~~i~e~--g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~-----~~~~i~~  360 (534)
                        .+...+..++-++|-|+..++....+.+.  +.++.++++++....+.+.+-++.++.|+......     ....++.
T Consensus       235 ~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~  314 (477)
T d1ho8a_         235 NHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL  314 (477)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence              12356789999999999998988888875  45999999998777778899999999999874221     2233445


Q ss_pred             cCChHHHHHhhcC-----CchHH-------HHHHHHHHhhc----------------CccH-HHH--------Hh--cCc
Q 009471          361 EGGIRSLLAYLDG-----PLPQE-------SAVGALRNLVG----------------SVSQ-EVL--------IS--LGF  401 (534)
Q Consensus       361 ~g~l~~L~~~L~~-----~~~~~-------~a~~aL~~La~----------------~~~~-~~l--------~~--~~~  401 (534)
                      .++++ +++.|..     +++.+       .--.-+..+++                +... +.+        -+  ...
T Consensus       315 ~~~l~-~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~l  393 (477)
T d1ho8a_         315 GNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKI  393 (477)
T ss_dssp             HCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHH
T ss_pred             cchhH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHH
Confidence            55554 4454432     22211       11111112221                1111 112        11  234


Q ss_pred             HHHHHHHHh----------cCCHHHHHHHHHHHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcC
Q 009471          402 FPRLVHVLK----------AGSLGAQQAAASALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVT  470 (534)
Q Consensus       402 i~~Lv~lL~----------~~~~~v~~~A~~aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~  470 (534)
                      +..|+++|.          +.++.+..-||.=|+.+++. |+.+..+.+.|+=..+++++.+++++||..|+.|+..+..
T Consensus       394 lk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         394 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888999996          34678888999999999965 9999999888998899999999999999999999987753

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.5e-08  Score=106.50  Aligned_cols=351  Identities=14%  Similarity=0.096  Sum_probs=208.9

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH-hHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hh
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKEDEK-NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGS--CE  230 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~--~~  230 (534)
                      ..++.++..+.+.++..|..++.+|..++..... ..... -...++.++..+.++++.+++.|+.+|..+.....  ..
T Consensus       436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3456677777888999999999999887642111 11122 23678899999999999999999999999986432  11


Q ss_pred             HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh--h-hHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHc
Q 009471          231 NWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA--E-MARAIVGHGGVRPLIEICQT--GDSVSQAAAACTLKNI  305 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~--~-~~~~l~~~g~i~~Lv~ll~~--~~~~~~~~a~~aL~nL  305 (534)
                      ..+  ..+++.++..++.........+..++..+...-  . ....+. ...++.+......  .+.........++..+
T Consensus       515 p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i  591 (888)
T d1qbkb_         515 PYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSV  591 (888)
T ss_dssp             GGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred             hHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            111  234677777788777777776777776665321  1 011111 1112444444332  1222222334444443


Q ss_pred             cC--CchH---HHHHHhhCcHHHHHHHh--------h----cCCChhHHHHHHHHHHHHccCCh-HHHHHHHhcCChHHH
Q 009471          306 SA--VPEV---RQMLAEEGIVSVMIKLL--------D----CGILLGSKEYAAECLQNLTASNE-NLRRSVVSEGGIRSL  367 (534)
Q Consensus       306 a~--~~~~---~~~i~e~g~i~~L~~ll--------~----~~~~~~v~~~a~~~L~~La~~~~-~~~~~i~~~g~l~~L  367 (534)
                      ..  ....   ...+.+ .++..+...+        .    .....+....++.++..+..... .....+.....++.+
T Consensus       592 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l  670 (888)
T d1qbkb_         592 ATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM  670 (888)
T ss_dssp             HHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHH
T ss_pred             HHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHH
Confidence            32  1111   111111 1111111111        1    11112456667777777664221 222333344566777


Q ss_pred             HHhhcC--CchHHHHHHHHHHhhc--CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHHHhcC
Q 009471          368 LAYLDG--PLPQESAVGALRNLVG--SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLVGEAG  441 (534)
Q Consensus       368 ~~~L~~--~~~~~~a~~aL~~La~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i~~~g  441 (534)
                      ...+++  +.++..|..+++.++.  ........ ..+++.+...+.+..+.++..|+++++.++..  ++...++  ..
T Consensus       671 ~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~  747 (888)
T d1qbkb_         671 YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PM  747 (888)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HH
Confidence            777876  5689999999999886  21111111 23567777777778889999999999999843  4444444  34


Q ss_pred             chHHHHHhhcCC--ChHHHHHHHHHHHHhcCCCcc-hHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh
Q 009471          442 CTPLLIKLLEAK--PNSVREVAAQAISSLVTLPQN-CREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS  514 (534)
Q Consensus       442 ~v~~Lv~ll~~~--~~~v~~~A~~aL~~L~~~~~~-~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~  514 (534)
                      .++.|+.+++.+  +..+++.++.+|+.|+...++ ......  ..++.++..|..-.+.+.|..+...++.+...
T Consensus       748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~--~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         748 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ--QFIRPWCTSLRNIRDNEEKDSAFRGICTMISV  821 (888)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG--GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH--HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence            688888998753  456889999999999854333 222333  46777887776644446788888888877654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.6e-08  Score=113.13  Aligned_cols=346  Identities=14%  Similarity=0.115  Sum_probs=217.4

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHH
Q 009471          155 NTRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLV  234 (534)
Q Consensus       155 ~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~  234 (534)
                      .|..++..+.+.|++.|..|+..|.+.+..+.-....-.....++.|+++|++++++||..|+.+|+.++..-+...   
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---
Confidence            46788889999999999999999988775322110000112468899999999999999999999999987654211   


Q ss_pred             hcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-h-h-----hHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHcc
Q 009471          235 SEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-A-E-----MARAIVGHGGVRPLIEICQ-TGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       235 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~-~-----~~~~l~~~g~i~~Lv~ll~-~~~~~~~~~a~~aL~nLa  306 (534)
                      -..+++.|+..+.+.+...+..+..+|..+... + .     ....+ ....++.+...+. ..++.++..++.+|..+.
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence            123477788888888888888888888766421 1 0     01111 1112344444443 356778888888888775


Q ss_pred             CCc--hHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhc-C--CchHHHHH
Q 009471          307 AVP--EVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLD-G--PLPQESAV  381 (534)
Q Consensus       307 ~~~--~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~-~--~~~~~~a~  381 (534)
                      ..-  .....  ...+++.++..+.+... .+|..|+.+|..++...+..   . -...++.+++.+. +  ...+..++
T Consensus       160 ~~~g~~l~~~--~~~il~~l~~~l~~~~~-~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         160 SRQGGLLVNF--HPSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHTCSSCTTT--HHHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHhhHhhHHH--HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHH
Confidence            411  11000  12356777777777776 89999999999998744321   1 1233566666553 2  45666777


Q ss_pred             HHHHHhhc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH---HHhc--C------------
Q 009471          382 GALRNLVG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL---VGEA--G------------  441 (534)
Q Consensus       382 ~aL~~La~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~---i~~~--g------------  441 (534)
                      .+++.++. ......-.-..+++.++..+...++.+++.+..++..+...  .+...+   +...  .            
T Consensus       233 ~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~  312 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD  312 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred             HHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhh
Confidence            88888876 21111001246789999999999999999999998888743  111111   1100  0            


Q ss_pred             ------------------chHHHHHhhcCCChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCCCchhHHH
Q 009471          442 ------------------CTPLLIKLLEAKPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPSPQNTAKK  502 (534)
Q Consensus       442 ------------------~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~  502 (534)
                                        ..+....-..+.+..+|..++.+|..+... +.....+..  ..++.++..+... ++.++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~--~~~~~L~~~l~d~-~~~vr~  389 (1207)
T d1u6gc_         313 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK--TVSPALISRFKER-EENVKA  389 (1207)
T ss_dssp             -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT--TTHHHHHSTTSCS-SSHHHH
T ss_pred             HHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHhcCC-chHHHH
Confidence                              000111111234567899999999999855 444444444  6789999888665 447888


Q ss_pred             HHHHHHHhhchh
Q 009471          503 YAVACLASLSPS  514 (534)
Q Consensus       503 ~a~~~L~~L~~~  514 (534)
                      .+..++..+...
T Consensus       390 ~~~~~l~~l~~~  401 (1207)
T d1u6gc_         390 DVFHAYLSLLKQ  401 (1207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            888888777543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.6e-07  Score=99.88  Aligned_cols=338  Identities=15%  Similarity=0.150  Sum_probs=205.1

Q ss_pred             hhchHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHh-HHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 009471          152 THGNTRELLARLQIGHLEAKHKALDSLVEAMKEDEKN-VLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCE  230 (534)
Q Consensus       152 ~~~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~-~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~  230 (534)
                      ....++.+...+...+...+..++.+|..++...... .....+ ..++.+..++.+.+..++..++.++..+....+..
T Consensus       645 l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~-~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~  723 (1207)
T d1u6gc_         645 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMID-AVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS  723 (1207)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHH-HHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHh-hHHHhhccccccccHHHHHHHHHHHHHHHhhcchh
Confidence            3445666777778889999999999998887543211 111111 23444556677788999999999999998876543


Q ss_pred             HHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcC---hhhHHHHH----hCC------------------ChHHH
Q 009471          231 NWLVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMS---AEMARAIV----GHG------------------GVRPL  283 (534)
Q Consensus       231 ~~l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~---~~~~~~l~----~~g------------------~i~~L  283 (534)
                      ..-....+++.++..+.+.  ...........+..+...   ......+.    ...                  .+..+
T Consensus       724 ~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l  803 (1207)
T d1u6gc_         724 LSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL  803 (1207)
T ss_dssp             GGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHH
Confidence            3344567888888888765  222222222233332211   10011100    000                  00001


Q ss_pred             H------------HHHc-----cCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471          284 I------------EICQ-----TGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (534)
Q Consensus       284 v------------~ll~-----~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~  346 (534)
                      .            .++.     ...+..+..++.+|..+....+..   ........+++.+.++++ +++..|..+|++
T Consensus       804 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~---~~~~l~~~l~~~l~~~~~-~vr~aAa~aLg~  879 (1207)
T d1u6gc_         804 TRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSE-EVKSAASYALGS  879 (1207)
T ss_dssp             HHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCC---SCTHHHHHHHHGGGCSCH-HHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Confidence            0            1110     012344445555555443210000   001235567777777776 899999999999


Q ss_pred             HccCChHHHHHHHhcCChHHHHHhhcC-CchHHHHHHHHHHhhcC---ccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHH
Q 009471          347 LTASNENLRRSVVSEGGIRSLLAYLDG-PLPQESAVGALRNLVGS---VSQEVLISLGFFPRLVHVLKAGSLGAQQAAAS  422 (534)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~~L~~-~~~~~~a~~aL~~La~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~  422 (534)
                      ++..+...        .++.+++.++. +..+...+.++..+...   ....... ..+++.|+..+.+.+..++..++.
T Consensus       880 l~~~~~~~--------~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~-~~i~~~L~~~~~~~~~~vr~~~a~  950 (1207)
T d1u6gc_         880 ISVGNLPE--------YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYV-ENIWALLLKHCECAEEGTRNVVAE  950 (1207)
T ss_dssp             HHHHTHHH--------HHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHH-HHHHHHHTTCCCCSSTTHHHHHHH
T ss_pred             HHHhhHHH--------HhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHH-HHHHHHHHHHhCCCcHHHHHHHHH
Confidence            98754432        25667777755 56677777777666541   1111111 123344444445667789999999


Q ss_pred             HHHHhcCC-hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCc-chHHHHhhCCCHHHHHhhcCCCCchhH
Q 009471          423 ALCRVCTS-AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQ-NCREVKRDDKSVPNLVQLLDPSPQNTA  500 (534)
Q Consensus       423 aL~~la~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~-~~~~~~~~~~~v~~Lv~lL~~~~~~~~  500 (534)
                      +|+.|+.. +        ...+|.|.+.+.++++.+|..+..++.++..+.+ ....++.  ..++.++..|.+. +..+
T Consensus       951 ~lg~L~~~~~--------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~--~li~~ll~~l~d~-~~~v 1019 (1207)
T d1u6gc_         951 CLGKLTLIDP--------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK--NCIGDFLKTLEDP-DLNV 1019 (1207)
T ss_dssp             HHHHHHHSSG--------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH--HHSTTTHHHHSSS-STHH
T ss_pred             HHHHHHhcCH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH--HHHHHHHHHhCCC-CHHH
Confidence            99999743 3        3468999999999999999999999999886643 3344554  3567777888765 5579


Q ss_pred             HHHHHHHHHhhchh
Q 009471          501 KKYAVACLASLSPS  514 (534)
Q Consensus       501 k~~a~~~L~~L~~~  514 (534)
                      |..|+.+|.+++.+
T Consensus      1020 R~~al~~l~~~~~~ 1033 (1207)
T d1u6gc_        1020 RRVALVTFNSAAHN 1033 (1207)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998876

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1e-06  Score=87.70  Aligned_cols=307  Identities=18%  Similarity=0.110  Sum_probs=187.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc-hhHH
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS-CENW  232 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~-~~~~  232 (534)
                      ...++..+.+.++ .+..++..+..++......   -.-.+.++.++..+.++  +...+..++.++..+..... ....
T Consensus        91 ~~~ll~~~~~~~~-~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  166 (458)
T d1ibrb_          91 KNYVLQTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  166 (458)
T ss_dssp             HHHHHHHTTCCCS-SSCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred             HHHHHhccCCCcH-HHHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhh
Confidence            3344555555443 3334555555554321100   01236788899888764  47788889999988876432 1111


Q ss_pred             HHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChhhH--HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCC
Q 009471          233 LVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMA--RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAV  308 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~--~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~  308 (534)
                      -....+++.++..+.+.  +..++..+..++..+.......  .........+.+...+.+++++++..++.+|..++..
T Consensus       167 ~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~  246 (458)
T d1ibrb_         167 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  246 (458)
T ss_dssp             GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            11223477888888754  6778999999999887542221  1112223356777888889999999999999988752


Q ss_pred             -chHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHH--------------------HHhcCChHHH
Q 009471          309 -PEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRS--------------------VVSEGGIRSL  367 (534)
Q Consensus       309 -~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~--------------------i~~~g~l~~L  367 (534)
                       ++.-...........+.....+.+. +++..++..+..++.........                    .......+.+
T Consensus       247 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  325 (458)
T d1ibrb_         247 YYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  325 (458)
T ss_dssp             CGGGCTTTTTTTHHHHHHHHHHCSSH-HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence             2211111122233444455555554 78888998888886421111000                    0001122333


Q ss_pred             HHhhcC---------CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hh-HHH
Q 009471          368 LAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AE-MKK  435 (534)
Q Consensus       368 ~~~L~~---------~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~-~~~  435 (534)
                      .+.+.+         ..++..+..++..++..... .+. ..+++.+...+++.++.++..|+.+|+.++..  .+ .+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~  403 (458)
T d1ibrb_         326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP  403 (458)
T ss_dssp             HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred             HhhhhcchhhhccccccHHHHHHHHHHHHHHhccH-hhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH
Confidence            343321         23678888888888761111 111 23566777778889999999999999999853  22 223


Q ss_pred             HHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCC
Q 009471          436 LVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTL  471 (534)
Q Consensus       436 ~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~  471 (534)
                      .+  ...++.++.+++++++.+|..|+++|..++..
T Consensus       404 ~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         404 LV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             TT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            33  45789999999999999999999999998743

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=2.7e-05  Score=76.38  Aligned_cols=316  Identities=13%  Similarity=0.114  Sum_probs=201.9

Q ss_pred             cCCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhHHHH----hcC--CHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 009471          194 GRSNIAALVQLLTAT-SPRIREKTVTVICSLAESGSCENWLV----SEG--VLPPLIRLVESGSTVGKEKATISLQRLSM  266 (534)
Q Consensus       194 ~~g~v~~Lv~lL~~~-~~~v~~~A~~~L~~La~~~~~~~~l~----~~g--~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~  266 (534)
                      +..++..++++|+.. .+++.+..+..+..+-.+++.+..++    +..  .-+++...+..++......++..+..++.
T Consensus        72 g~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          72 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence            344688999999874 58999999988888877665332222    212  23455556666666677777878888866


Q ss_pred             ChhhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHccCCchHHHHHHh--hCcHHHHHHHhhc------------
Q 009471          267 SAEMARAIVG--HGGVRPLIEICQTGDSVSQAAAACTLKNISAVPEVRQMLAE--EGIVSVMIKLLDC------------  330 (534)
Q Consensus       267 ~~~~~~~l~~--~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e--~g~i~~L~~ll~~------------  330 (534)
                      .........+  ......+-.+...++...+..++.++..+...++.|..+..  ...++.++++++.            
T Consensus       152 ~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         152 NGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             TTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             ccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence            4322221111  11123333344567788888889999999999999988854  5567777777753            


Q ss_pred             ----CCChhHHHHHHHHHHHHccCChHHHHHHHhc--CChHHHHHhhcC---CchHHHHHHHHHHhhc-Cc--c----HH
Q 009471          331 ----GILLGSKEYAAECLQNLTASNENLRRSVVSE--GGIRSLLAYLDG---PLPQESAVGALRNLVG-SV--S----QE  394 (534)
Q Consensus       331 ----~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~--g~l~~L~~~L~~---~~~~~~a~~aL~~La~-~~--~----~~  394 (534)
                          +.....+++++-|++.++. ++.....+.+.  +.++.++++++.   ..+...++.++.|++. ..  .    ..
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  310 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  310 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence                1112569999999999998 55555566554  348888888854   4567788999999987 21  1    22


Q ss_pred             HHHhcCcHHHHHHHHhcC---CHHHHHHHHH-------HHHHhcCC---------------hhHH-HHHHhc--------
Q 009471          395 VLISLGFFPRLVHVLKAG---SLGAQQAAAS-------ALCRVCTS---------------AEMK-KLVGEA--------  440 (534)
Q Consensus       395 ~l~~~~~i~~Lv~lL~~~---~~~v~~~A~~-------aL~~la~~---------------~~~~-~~i~~~--------  440 (534)
                      .++..++++ ++..|...   |+++....-.       -+..++.-               |-|+ +.++.+        
T Consensus       311 ~~v~~~~l~-~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         311 LLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHcchhH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            344555554 45555433   4544332211       11112211               2232 233322        


Q ss_pred             --CchHHHHHhhc----------CCChHHHHHHHHHHHHhcCCCcchHHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHH
Q 009471          441 --GCTPLLIKLLE----------AKPNSVREVAAQAISSLVTLPQNCREVKRDDKSVPNLVQLLDPSPQNTAKKYAVACL  508 (534)
Q Consensus       441 --g~v~~Lv~ll~----------~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L  508 (534)
                        ..++.|+++++          +.++.+...||.=+..++.+.++-+.++.+.|+=..+++++.++ ++++|..|+.++
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~av  468 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKAT  468 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence              26789999986          33577778888889999966666666667677766777888776 568999999988


Q ss_pred             Hhhc
Q 009471          509 ASLS  512 (534)
Q Consensus       509 ~~L~  512 (534)
                      ..+.
T Consensus       469 Qklm  472 (477)
T d1ho8a_         469 QAII  472 (477)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.9e-06  Score=81.97  Aligned_cols=271  Identities=13%  Similarity=0.091  Sum_probs=167.7

Q ss_pred             chHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCc-
Q 009471          154 GNTRELLARLQI--GHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGS-  228 (534)
Q Consensus       154 ~~i~~Ll~~L~~--~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~-  228 (534)
                      ..++.++..+.+  .+...+..++..+..+................++.++..+.++  +.+++..++.++..+..... 
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            357777777765  3456677777787777653322211111123577788888764  47899999999999986543 


Q ss_pred             -hhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471          229 -CENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       229 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (534)
                       ...........+.+...+.+++++++..++.+|..+.... +.-.........+.+.....+.++.++..++..+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence             1112222335667777888889999999999999986532 21111111112233455567778888888888887775


Q ss_pred             CCchH---------------------HHHHHhhCcHHHHHHHhhcCC------ChhHHHHHHHHHHHHccCCh-HHHHHH
Q 009471          307 AVPEV---------------------RQMLAEEGIVSVMIKLLDCGI------LLGSKEYAAECLQNLTASNE-NLRRSV  358 (534)
Q Consensus       307 ~~~~~---------------------~~~i~e~g~i~~L~~ll~~~~------~~~v~~~a~~~L~~La~~~~-~~~~~i  358 (534)
                      .....                     .........++.+.+.+.+..      ...++..+..++..++...+ ....  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--  364 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP--  364 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH--
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh--
Confidence            32100                     001111233445555543211      11478888888888875322 1111  


Q ss_pred             HhcCChHHHHHhhcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 009471          359 VSEGGIRSLLAYLDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCT  429 (534)
Q Consensus       359 ~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~  429 (534)
                         ..++.+.+.+.+  +..|+.++.+|+.++.......+  .-..+++.++..+++.++.||..|+++|++++.
T Consensus       365 ---~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         365 ---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             ---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence               124455566665  45788999999999862111111  124578999999999999999999999999974

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=0.00014  Score=77.77  Aligned_cols=345  Identities=13%  Similarity=0.080  Sum_probs=199.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHhHHHHhcCCcHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchh-HH
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKED-EKNVLAVMGRSNIAALVQLLTATS-PRIREKTVTVICSLAESGSCE-NW  232 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~-~~v~~~A~~~L~~La~~~~~~-~~  232 (534)
                      -..++..+.+.++..+..++..+..++..+ +.+.    =...++.|++.+.+++ ..++..++.+|..++...+.. ..
T Consensus        97 k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            345667778888888999998888887531 1100    0134677888777665 678889999999998654311 11


Q ss_pred             HHh--cCCHHHHHHHHc--cCCHHHHHHHHHHHHHhhcChh-hH-HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHcc
Q 009471          233 LVS--EGVLPPLIRLVE--SGSTVGKEKATISLQRLSMSAE-MA-RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNIS  306 (534)
Q Consensus       233 l~~--~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~Ls~~~~-~~-~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa  306 (534)
                      +..  ...+..++..+.  +.+..++..+..++.++...-+ +- ........++.+...+.++++.++..++.++..++
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~  252 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM  252 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            111  123344444443  3467899999999988765321 11 01111223577788889999999999999999887


Q ss_pred             CCc-hHHHHHHhhCcHHHH-HHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHh----------------cCChHHHH
Q 009471          307 AVP-EVRQMLAEEGIVSVM-IKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVS----------------EGGIRSLL  368 (534)
Q Consensus       307 ~~~-~~~~~i~e~g~i~~L-~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~----------------~g~l~~L~  368 (534)
                      ... +.-...... .+..+ ....++.++ .++..++..+..++............                ...++.+.
T Consensus       253 ~~~~~~~~~~l~~-~l~~l~~~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~  330 (861)
T d2bpta1         253 SKYYTFMKPYMEQ-ALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHGGGCHHHHHH-THHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            522 211111111 23333 333344444 78889988888877521111111111                11234444


Q ss_pred             HhhcC---------CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHHH
Q 009471          369 AYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKLV  437 (534)
Q Consensus       369 ~~L~~---------~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~i  437 (534)
                      ..+.+         ...+..+..++..++.... ..+. .-..+.+...+.+.+...+..+..++..++..  ......+
T Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~  408 (861)
T d2bpta1         331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY  408 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHHHhhcc-hhhh-hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH
Confidence            44422         1245666666766664100 0000 11233444455677889999999999999864  3322222


Q ss_pred             HhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHHHHhhCCC----HHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          438 GEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCREVKRDDKS----VPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       438 ~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~~~~~~~~----v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      . ...++.++..+.++++.+|..+++++..++......   ......    +..+...+..+  ..++..+..++..+..
T Consensus       409 l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         409 V-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES---IDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVE  482 (861)
T ss_dssp             H-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG---SCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchh---hhhHHhhhhhhHHHHhccccC--hHHHHHHHHHHHHHHH
Confidence            2 346889999999999999999999999886431110   011122    23344444443  2456666666666554


Q ss_pred             h
Q 009471          514 S  514 (534)
Q Consensus       514 ~  514 (534)
                      .
T Consensus       483 ~  483 (861)
T d2bpta1         483 Q  483 (861)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.07  E-value=2.9e-07  Score=73.61  Aligned_cols=109  Identities=18%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHH
Q 009471          205 LTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIVGHGGVRPLI  284 (534)
Q Consensus       205 L~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~~~g~i~~Lv  284 (534)
                      |+++++.+|..|+.+|+.+.           ...++.|+..|+++++.++..|+++|.++..          .+.++.|.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence            34566777777777776543           1357889999999999999999999987643          12358899


Q ss_pred             HHHccCChHHHHHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHH
Q 009471          285 EICQTGDSVSQAAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQ  345 (534)
Q Consensus       285 ~ll~~~~~~~~~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~  345 (534)
                      .++.++++.+|..++.+|..+..          .+.++.|..++++++. .++..|+.+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~-~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTG-FARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCT-HHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence            99999999999999999987642          4568888899988887 89998888763

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=0.00024  Score=75.86  Aligned_cols=346  Identities=14%  Similarity=0.134  Sum_probs=200.3

Q ss_pred             chHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcChHhHHH--------Hhc----CCcHHHHHHHhcCCCHHHHHHHHHH
Q 009471          154 GNTRELLARLQIG--HLEAKHKALDSLVEAMKEDEKNVLA--------VMG----RSNIAALVQLLTATSPRIREKTVTV  219 (534)
Q Consensus       154 ~~i~~Ll~~L~~~--~~~~~~~A~~~L~~l~~~~~~~~~~--------i~~----~g~v~~Lv~lL~~~~~~v~~~A~~~  219 (534)
                      .++..++..+.+.  +...|..|+..|.+...........        .+.    ...-..+++.+.++++.+|..++.+
T Consensus        39 ~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~  118 (861)
T d2bpta1          39 QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQL  118 (861)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3455666666543  4566777777776665432211100        011    1224567778888899999999999


Q ss_pred             HHHhhcCCc---hhHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhhcChhhHH-HHHh--CCChHHHHHHHc--cC
Q 009471          220 ICSLAESGS---CENWLVSEGVLPPLIRLVESG-STVGKEKATISLQRLSMSAEMAR-AIVG--HGGVRPLIEICQ--TG  290 (534)
Q Consensus       220 L~~La~~~~---~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~~Ls~~~~~~~-~l~~--~g~i~~Lv~ll~--~~  290 (534)
                      ++.++..+-   ...     ..++.|+..+.+. +...+..+..+|..++...+... .+..  ...+..++..+.  ..
T Consensus       119 i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~  193 (861)
T d2bpta1         119 IAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTET  193 (861)
T ss_dssp             HHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999975431   112     2467788877765 45677788899988875422110 0000  011233333333  34


Q ss_pred             ChHHHHHHHHHHHHccCCc-hHH-HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHH-
Q 009471          291 DSVSQAAAACTLKNISAVP-EVR-QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSL-  367 (534)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~~-~~~-~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L-  367 (534)
                      +..++..+..++.++...- ..- ........++.+...+.+++. +++..++.++..++...+..-...+.. .+..+ 
T Consensus       194 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~  271 (861)
T d2bpta1         194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI-EVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALT  271 (861)
T ss_dssp             CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            6788999999998877532 111 111123356677777777776 899999999999986332211111111 12222 


Q ss_pred             HHhhcC--CchHHHHHHHHHHhhcCc--cHHHH----------------HhcCcHHHHHHHHhcC-------CHHHHHHH
Q 009471          368 LAYLDG--PLPQESAVGALRNLVGSV--SQEVL----------------ISLGFFPRLVHVLKAG-------SLGAQQAA  420 (534)
Q Consensus       368 ~~~L~~--~~~~~~a~~aL~~La~~~--~~~~l----------------~~~~~i~~Lv~lL~~~-------~~~v~~~A  420 (534)
                      ....++  +.++..++..+..++...  .....                .-...++.+...+...       +...+..+
T Consensus       272 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (861)
T d2bpta1         272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            223333  567788888887776511  00000                0012344555555322       23567777


Q ss_pred             HHHHHHhcCC--hhHHHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcc--hHHHHhhCCCHHHHHhhcCCCC
Q 009471          421 ASALCRVCTS--AEMKKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQN--CREVKRDDKSVPNLVQLLDPSP  496 (534)
Q Consensus       421 ~~aL~~la~~--~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~--~~~~~~~~~~v~~Lv~lL~~~~  496 (534)
                      ..++..++..  .+.-..+     .+.+.....+.+...+..+..++..++.....  ...+..  ..++.++..+.+. 
T Consensus       352 ~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~--~~l~~l~~~l~d~-  423 (861)
T d2bpta1         352 GACLQLFAQNCGNHILEPV-----LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQ-  423 (861)
T ss_dssp             HHHHHHHHHHHGGGGHHHH-----HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCS-
T ss_pred             HHHHHHHHhhcchhhhhhh-----cchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHH--HHHHHHHHHhcCc-
Confidence            7777776643  2221221     34445556678888999999999999754332  233333  4678888888775 


Q ss_pred             chhHHHHHHHHHHhhchh
Q 009471          497 QNTAKKYAVACLASLSPS  514 (534)
Q Consensus       497 ~~~~k~~a~~~L~~L~~~  514 (534)
                      +..++..+..++..++..
T Consensus       424 ~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         424 SLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHH
Confidence            457889999998887654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.00022  Score=76.57  Aligned_cols=347  Identities=16%  Similarity=0.091  Sum_probs=207.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCchhH-H
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTATS--PRIREKTVTVICSLAESGSCEN-W  232 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~v~~~A~~~L~~La~~~~~~~-~  232 (534)
                      ...++..+.+.+ ..+..++..+..++..+-..  . .=.+.++.|++.+.+++  ..+++.++.+|..++.+-.... .
T Consensus        92 k~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~--~-~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  167 (876)
T d1qgra_          92 KNYVLHTLGTET-YRPSSASQCVAGIACAEIPV--N-QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGG--T-CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCc--c-ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            344556666655 34556677777776431100  0 01267899999887754  7889999999999976432111 1


Q ss_pred             HHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhhcChhhH--HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC-
Q 009471          233 LVSEGVLPPLIRLVESG--STVGKEKATISLQRLSMSAEMA--RAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA-  307 (534)
Q Consensus       233 l~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~Ls~~~~~~--~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~-  307 (534)
                      -....+++.++..+.+.  +..++..+..++.+........  ......-.++.+...+.++++.++..++.+|..+.. 
T Consensus       168 ~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~  247 (876)
T d1qgra_         168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (876)
T ss_dssp             GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            11124578888888654  5678888888887765432111  011111124667777888999999999999988876 


Q ss_pred             CchHHHHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHHH----HH----------------HhcCChHHH
Q 009471          308 VPEVRQMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLRR----SV----------------VSEGGIRSL  367 (534)
Q Consensus       308 ~~~~~~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~~----~i----------------~~~g~l~~L  367 (534)
                      .++.-...........+.....+... +++..++..+..++........    ..                .....++.+
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  326 (876)
T d1qgra_         248 YYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (876)
T ss_dssp             SGGGCHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            33332333334445555566666554 7788888877777642111100    00                001122333


Q ss_pred             HHhhcC---------CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--hhHHHH
Q 009471          368 LAYLDG---------PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS--AEMKKL  436 (534)
Q Consensus       368 ~~~L~~---------~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~--~~~~~~  436 (534)
                      ...+..         ..++..+..++..++..... .+. ..+++.+...+.+.+...++.++.++..+...  .+....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~  404 (876)
T d1qgra_         327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP  404 (876)
T ss_dssp             HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HHHHHhcccccccccchHHHHHHHHHHHHHHHhhh-hhh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            333321         23577777777777751100 011 11345555666788889999999999998854  222222


Q ss_pred             HHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcch---HHHHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhch
Q 009471          437 VGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNC---REVKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSP  513 (534)
Q Consensus       437 i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~---~~~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~  513 (534)
                      .. ...++.+...+.++++.++..+++++..++....+.   ..+..  ..++.+...++++  ..++..+..++.++..
T Consensus       405 ~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~--~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         405 LV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGLSAE--PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhh--hHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence            21 346889999999999999999999999987443221   11111  2345566666654  3577888888888865


Q ss_pred             h
Q 009471          514 S  514 (534)
Q Consensus       514 ~  514 (534)
                      .
T Consensus       480 ~  480 (876)
T d1qgra_         480 A  480 (876)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.00036  Score=74.73  Aligned_cols=304  Identities=15%  Similarity=0.126  Sum_probs=183.7

Q ss_pred             hHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHhHHHHhcCCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCch-
Q 009471          155 NTRELLARLQIGH--LEAKHKALDSLVEAMKEDEKNVLAVMGRSNIAALVQLLTAT--SPRIREKTVTVICSLAESGSC-  229 (534)
Q Consensus       155 ~i~~Ll~~L~~~~--~~~~~~A~~~L~~l~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~A~~~L~~La~~~~~-  229 (534)
                      .++.++..+.+++  ...+..++..|..++.+-......-.-...++.++..+.++  +.+++..++.++.+....... 
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            5777777776544  56677888888888754221111111124577788888654  478999999999888665431 


Q ss_pred             -hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHccC
Q 009471          230 -ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS-AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISA  307 (534)
Q Consensus       230 -~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~-~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~  307 (534)
                       .......-+++.+...+.++++.++..++.+|..+... ++.............+...+.+.++.++..++..+..++.
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence             11111122466777778888999999999999998754 3332333333344556666777788888777777766654


Q ss_pred             Cc-hHH--------------------HHHHhhCcHHHHHHHhhcCC------ChhHHHHHHHHHHHHccCChHHHHHHHh
Q 009471          308 VP-EVR--------------------QMLAEEGIVSVMIKLLDCGI------LLGSKEYAAECLQNLTASNENLRRSVVS  360 (534)
Q Consensus       308 ~~-~~~--------------------~~i~e~g~i~~L~~ll~~~~------~~~v~~~a~~~L~~La~~~~~~~~~i~~  360 (534)
                      .. +..                    ........++.+...+....      ...++..+..++..++...        .
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~--------~  360 (876)
T d1qgra_         289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--------E  360 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--------G
T ss_pred             HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh--------h
Confidence            21 000                    00111223444444443211      1136777777777776421        1


Q ss_pred             cCChHHHHHh----hcC--CchHHHHHHHHHHhhcCccHHHH--HhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-h
Q 009471          361 EGGIRSLLAY----LDG--PLPQESAVGALRNLVGSVSQEVL--ISLGFFPRLVHVLKAGSLGAQQAAASALCRVCTS-A  431 (534)
Q Consensus       361 ~g~l~~L~~~----L~~--~~~~~~a~~aL~~La~~~~~~~l--~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la~~-~  431 (534)
                      ..+++.++.+    +.+  ...++.++.+++.+........+  ....+++.++..+.+.++.++..+++++..++.. +
T Consensus       361 ~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcc
Confidence            2234444443    444  34677888888888763222222  2245788899999999999999999999998743 1


Q ss_pred             h-H--HHHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhc
Q 009471          432 E-M--KKLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLV  469 (534)
Q Consensus       432 ~-~--~~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~  469 (534)
                      . .  ...+  ...++.+...+. .++.++..++.++.++.
T Consensus       441 ~~~~~~~~~--~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         441 EAAINDVYL--APLLQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             GGTSSTTTH--HHHHHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHh--hhHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            1 1  0001  112445555554 46788999999998876

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.79  E-value=1.9e-05  Score=62.55  Aligned_cols=88  Identities=23%  Similarity=0.323  Sum_probs=73.9

Q ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009471          196 SNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMARAIV  275 (534)
Q Consensus       196 g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~~~l~  275 (534)
                      ..++.|++.|+++++.+|..|+.+|+.+..          .+.++.|..+|++.++.++..|+++|..+..         
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~---------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence            568899999999999999999999986642          1247899999999999999999999998743         


Q ss_pred             hCCChHHHHHHHccCChHHHHHHHHHHH
Q 009471          276 GHGGVRPLIEICQTGDSVSQAAAACTLK  303 (534)
Q Consensus       276 ~~g~i~~Lv~ll~~~~~~~~~~a~~aL~  303 (534)
                       ...++.|..++.++++.++..|+.+|.
T Consensus        83 -~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 -ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             123577888999999999999988874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0081  Score=55.01  Aligned_cols=212  Identities=13%  Similarity=0.112  Sum_probs=159.0

Q ss_pred             HHHHhhCcHHHHHHHhhcCCChhHHHHHHHHHHHHccCChHHH----HHHH-hcCChHHHHHhhcCCchHHHHHHHHHHh
Q 009471          313 QMLAEEGIVSVMIKLLDCGILLGSKEYAAECLQNLTASNENLR----RSVV-SEGGIRSLLAYLDGPLPQESAVGALRNL  387 (534)
Q Consensus       313 ~~i~e~g~i~~L~~ll~~~~~~~v~~~a~~~L~~La~~~~~~~----~~i~-~~g~l~~L~~~L~~~~~~~~a~~aL~~L  387 (534)
                      ..+..++.+..++.-+..-+. +.+..+..+..++-......+    +.+. +...+..|+..-+++++--.+-..|+.+
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~f-E~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDF-EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH-HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCC-chhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            455668888888888887776 789999999999887443322    3333 3345566666667788999999999999


Q ss_pred             hc-CccHHHHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHhc-CChhHHHHHHhcC---chHHHHHhhcCCChHHHHHHH
Q 009471          388 VG-SVSQEVLISLGFFPRLVHVLKAGSLGAQQAAASALCRVC-TSAEMKKLVGEAG---CTPLLIKLLEAKPNSVREVAA  462 (534)
Q Consensus       388 a~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~~la-~~~~~~~~i~~~g---~v~~Lv~ll~~~~~~v~~~A~  462 (534)
                      .. +.....++....+..++++++.++-++...|..++..+- +++.....+....   +...+-+++.+++--++..+.
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            98 555667778888999999999999999999999998865 5665555554443   677888899999999999999


Q ss_pred             HHHHHhcCCCcchHH---HHhhCCCHHHHHhhcCCCCchhHHHHHHHHHHhhchh---HHHHHHHHhhcc
Q 009471          463 QAISSLVTLPQNCRE---VKRDDKSVPNLVQLLDPSPQNTAKKYAVACLASLSPS---ARKLLERLERGR  526 (534)
Q Consensus       463 ~aL~~L~~~~~~~~~---~~~~~~~v~~Lv~lL~~~~~~~~k~~a~~~L~~L~~~---~k~~~~~l~~~~  526 (534)
                      ..|..+..+..|...   ++.+...+..++.+|.++ ...++-.|..++--....   ++.+...|.+||
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr  290 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ  290 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhH
Confidence            999999999888765   455556777888888876 446777776665544444   556666665443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.065  Score=48.84  Aligned_cols=235  Identities=15%  Similarity=0.192  Sum_probs=157.9

Q ss_pred             HHHhCCChHHHHHHHccCChHHHHHHHHHHHHccCCc-hHH----HHHHh-hCcHHHHHHHhhcCCChhHHHHHHHHHHH
Q 009471          273 AIVGHGGVRPLIEICQTGDSVSQAAAACTLKNISAVP-EVR----QMLAE-EGIVSVMIKLLDCGILLGSKEYAAECLQN  346 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~~~~~~~~~a~~aL~nLa~~~-~~~----~~i~e-~g~i~~L~~ll~~~~~~~v~~~a~~~L~~  346 (534)
                      .+...+.+..|+..|..-+.+.|..+..+..++-... +.+    ..+.. ..++..|+.--+  ++ ++-..+-..|+.
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~-eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SP-EIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--ST-TTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--Cc-chhhhhhHHHHH
Confidence            3445667788888888889999999999988887633 222    33333 333444433332  22 567777778888


Q ss_pred             HccCChHHHHHHHhcCChHHHHHhhcCC--chHHHHHHHHHHhhc-C-ccHHHHHh---cCcHHHHHHHHhcCCHHHHHH
Q 009471          347 LTASNENLRRSVVSEGGIRSLLAYLDGP--LPQESAVGALRNLVG-S-VSQEVLIS---LGFFPRLVHVLKAGSLGAQQA  419 (534)
Q Consensus       347 La~~~~~~~~~i~~~g~l~~L~~~L~~~--~~~~~a~~aL~~La~-~-~~~~~l~~---~~~i~~Lv~lL~~~~~~v~~~  419 (534)
                      +.. .+.....+.....+..++++++.+  ++...|..++..+-. . .....+++   ..++..+-.+|.+++.-+++.
T Consensus       141 cik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            776 566777888888899999998764  466777777777765 2 22333444   345777888999999999999


Q ss_pred             HHHHHHHhcCChhHH----HHHHhcCchHHHHHhhcCCChHHHHHHHHHHHHhcCCCcchHH---HHh--hCCCHHHHHh
Q 009471          420 AASALCRVCTSAEMK----KLVGEAGCTPLLIKLLEAKPNSVREVAAQAISSLVTLPQNCRE---VKR--DDKSVPNLVQ  490 (534)
Q Consensus       420 A~~aL~~la~~~~~~----~~i~~~g~v~~Lv~ll~~~~~~v~~~A~~aL~~L~~~~~~~~~---~~~--~~~~v~~Lv~  490 (534)
                      +...|+.+-.+..+.    +++.+..-+..++.++.+.+..+|..|-.+.-.++.++.....   +..  ....+..|-.
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~  299 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK  299 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHh
Confidence            999999998664443    3444445788999999999999999999999888876543332   222  1122333333


Q ss_pred             hcCCC-Cc---hhHHHHHHHHHHhh
Q 009471          491 LLDPS-PQ---NTAKKYAVACLASL  511 (534)
Q Consensus       491 lL~~~-~~---~~~k~~a~~~L~~L  511 (534)
                      ...+. ++   .+.|.+-+.-+.+|
T Consensus       300 f~~d~~~DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         300 FQNDRTEDEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             TTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHhC
Confidence            32221 12   23577777777665

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.82  E-value=0.0047  Score=55.01  Aligned_cols=63  Identities=11%  Similarity=0.063  Sum_probs=34.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHH-----HHHhhcC--hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 009471          239 LPPLIRLVESGSTVGKEKATIS-----LQRLSMS--AEMARAIVGHGGVRPLIEICQTGDSVSQAAAACT  301 (534)
Q Consensus       239 i~~Lv~lL~~~~~~~~~~A~~~-----L~~Ls~~--~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~a  301 (534)
                      .+.|..++++++..++..++..     |..+..+  .+.+..+...-+.+.|..+++++++.++..++..
T Consensus       116 ~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         116 LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            4455666677777777666543     2222222  2233444444455666666677777777666543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.45  E-value=0.0067  Score=53.97  Aligned_cols=79  Identities=14%  Similarity=0.093  Sum_probs=55.7

Q ss_pred             hHHHHhcCCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 009471          188 NVLAVMGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMS  267 (534)
Q Consensus       188 ~~~~i~~~g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~  267 (534)
                      .+......-.+..|..+++++++.||..|+..|.                 .+.+..++.+++..++..++..+   +  
T Consensus        58 ~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~~l---~--  115 (233)
T d1lrva_          58 RRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVADRL---P--  115 (233)
T ss_dssp             HHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHHHS---C--
T ss_pred             HHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHhcc---C--
Confidence            3333344456888889999999999999876431                 24567778888999988776542   1  


Q ss_pred             hhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 009471          268 AEMARAIVGHGGVRPLIEICQTGDSVSQAAAAC  300 (534)
Q Consensus       268 ~~~~~~l~~~g~i~~Lv~ll~~~~~~~~~~a~~  300 (534)
                                  .+.|..++.++++.++..++.
T Consensus       116 ------------~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_         116 ------------LEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             ------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             ------------HHHHHHHhcCCCHHHHHHHHh
Confidence                        255667777888888777664

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.34  E-value=2.9  Score=38.29  Aligned_cols=217  Identities=15%  Similarity=0.104  Sum_probs=121.6

Q ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhCCChHHHHHHHcc----CChHHHHHHHHHHHHccC----C
Q 009471          238 VLPPLIRLVESGSTVGKEKATISLQRLSMSA-EMARAIVGHGGVRPLIEICQT----GDSVSQAAAACTLKNISA----V  308 (534)
Q Consensus       238 ~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~-~~~~~l~~~g~i~~Lv~ll~~----~~~~~~~~a~~aL~nLa~----~  308 (534)
                      .+..+.+++.++..... .|...+..+.... +....+      ..+..++.+    .++.++..+.-++++|..    .
T Consensus        89 a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l------~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~  161 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESL------SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN  161 (336)
T ss_dssp             HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHH------HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHH------HHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC
Confidence            35556666665533322 3444555554332 223322      555666654    456676666666665543    1


Q ss_pred             chHHHHHHhhCcHHHHHHH----hhcCCChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHHhhcC---------Cc
Q 009471          309 PEVRQMLAEEGIVSVMIKL----LDCGILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLAYLDG---------PL  375 (534)
Q Consensus       309 ~~~~~~i~e~g~i~~L~~l----l~~~~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~---------~~  375 (534)
                      ...+.    ...++.+.+.    ...++. +-+..++.+|+|+..  +         ..++.+..++.+         ..
T Consensus       162 ~~~~~----~~~~~~l~~~l~~~~~~~~~-~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         162 TVSCP----DELLQPLHDLLSQSSDRAKE-EEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             CSSCC----GGGTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCc----HHHHHHHHHHHHHhhcccch-HHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHH
Confidence            11110    1223333333    344443 556678899999863  2         236677777743         23


Q ss_pred             hHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh--cCCHHHHHHHHHHHHHhcCChhHHHHHHhcCchHHHHHhhc-C
Q 009471          376 PQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK--AGSLGAQQAAASALCRVCTSAEMKKLVGEAGCTPLLIKLLE-A  452 (534)
Q Consensus       376 ~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~A~~aL~~la~~~~~~~~i~~~g~v~~Lv~ll~-~  452 (534)
                      +|..|+++|++++... +..     +.+.+..+..  ..++++|..|..+|...-=+.         ..+..+...+. .
T Consensus       226 vR~aAi~Alr~~~~~~-p~~-----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~---------~~l~~i~~~l~~E  290 (336)
T d1lsha1         226 VQAEAIMALRNIAKRD-PRK-----VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSV---------ALVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHHHHTTTTGGGTC-HHH-----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCH---------HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhcC-cHH-----HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHhC
Confidence            7889999999987632 111     2355566554  446899999988886642121         12444555554 5


Q ss_pred             CChHHHHHHHHHHHHhcCC-CcchHHHHhhCCCHHHHHhhcCCC
Q 009471          453 KPNSVREVAAQAISSLVTL-PQNCREVKRDDKSVPNLVQLLDPS  495 (534)
Q Consensus       453 ~~~~v~~~A~~aL~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~  495 (534)
                      ++..|.-.....|.+++.. .+....+..   .....+.+|.+.
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~~~~la~---~a~~a~~ll~p~  331 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPEFRDVAA---ACSVAIKMLGSK  331 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGGGHHHHH---HHHHHHTTSCSG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcchHHHHH---HHHHHHHHhCcc
Confidence            7788888888889999843 333344433   234556666654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.92  E-value=7  Score=35.67  Aligned_cols=176  Identities=15%  Similarity=0.164  Sum_probs=111.4

Q ss_pred             HHHHHhcCCH-HHHHHHHHHHHHHhh-cChHhHHHHhcCCcHHHHHHHhcC---------C--CHHHHHHHHHHHHHhhc
Q 009471          159 LLARLQIGHL-EAKHKALDSLVEAMK-EDEKNVLAVMGRSNIAALVQLLTA---------T--SPRIREKTVTVICSLAE  225 (534)
Q Consensus       159 Ll~~L~~~~~-~~~~~A~~~L~~l~~-~~~~~~~~i~~~g~v~~Lv~lL~~---------~--~~~v~~~A~~~L~~La~  225 (534)
                      .+..|+++-. +.....+..|.--+. ........| +.+|+..|+.+|..         +  +...+..++.+|..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            4555655533 334445555533343 444566666 56788888887731         1  25678889999999988


Q ss_pred             CCch-hHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcCh---hhH----------HHHHhCCChHHHHHHHccC-
Q 009471          226 SGSC-ENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSA---EMA----------RAIVGHGGVRPLIEICQTG-  290 (534)
Q Consensus       226 ~~~~-~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~---~~~----------~~l~~~g~i~~Lv~ll~~~-  290 (534)
                      .... ...+-...++..++..|.+....++..|...|..++..+   +..          ....+.+-...++..++.+ 
T Consensus        86 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~  165 (343)
T d2bnxa1          86 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  165 (343)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred             cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc
Confidence            7764 445556689999999999999999999999999987532   211          1122345577788777755 


Q ss_pred             ChHHHHHHHHHHHHccCCc-------hHHHHHHhhCcHHHHHHHhhcCCChhH
Q 009471          291 DSVSQAAAACTLKNISAVP-------EVRQMLAEEGIVSVMIKLLDCGILLGS  336 (534)
Q Consensus       291 ~~~~~~~a~~aL~nLa~~~-------~~~~~i~e~g~i~~L~~ll~~~~~~~v  336 (534)
                      +.+.+..++..+-.+..++       ..|..+...|..+ +++-++....+.+
T Consensus       166 ~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~~~~~~~L  217 (343)
T d2bnxa1         166 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDM  217 (343)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCCCHHH
T ss_pred             cHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHHccCChHH
Confidence            4556666665555555543       3455666676555 4555554444333

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=89.50  E-value=7.4  Score=35.37  Aligned_cols=234  Identities=10%  Similarity=0.061  Sum_probs=136.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHhHHHHhc----C---CcHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-
Q 009471          156 TRELLARLQIGHLEAKHKALDSLVEAMKEDEKNVLAVMG----R---SNIAALVQLLTATSPRIREKTVTVICSLAESG-  227 (534)
Q Consensus       156 i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~----~---g~v~~Lv~lL~~~~~~v~~~A~~~L~~La~~~-  227 (534)
                      +-.|++.++.-+.+...+....    ....+..+..+.+    .   ..+..+.+++.++..... .|...+..++... 
T Consensus        45 F~~Lv~~lR~~~~e~l~~v~~~----~~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~  119 (336)
T d1lsha1          45 FLRLTAFLRNVDAGVLQSIWHK----LHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQ  119 (336)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHH----HTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH----HhcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCC
Confidence            4567777777665554443322    2334444443332    1   336677788877652222 2334444444332 


Q ss_pred             chhHHHHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHhhc----ChhhHHHHHhCCChHHHH----HHHccCChHHH
Q 009471          228 SCENWLVSEGVLPPLIRLVES----GSTVGKEKATISLQRLSM----SAEMARAIVGHGGVRPLI----EICQTGDSVSQ  295 (534)
Q Consensus       228 ~~~~~l~~~g~i~~Lv~lL~~----~~~~~~~~A~~~L~~Ls~----~~~~~~~l~~~g~i~~Lv----~ll~~~~~~~~  295 (534)
                      +..+      .+..+..++++    .++.++..+.-++++|..    +.+.+    ....++.+.    +....++.+-+
T Consensus       120 Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~  189 (336)
T d1lsha1         120 ATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEI  189 (336)
T ss_dssp             CCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhhcccchHHH
Confidence            2332      25666677765    367777777777777643    21111    011233333    34445677777


Q ss_pred             HHHHHHHHHccCCchHHHHHHhhCcHHHHHHHhhcC------CChhHHHHHHHHHHHHccCChHHHHHHHhcCChHHHHH
Q 009471          296 AAAACTLKNISAVPEVRQMLAEEGIVSVMIKLLDCG------ILLGSKEYAAECLQNLTASNENLRRSVVSEGGIRSLLA  369 (534)
Q Consensus       296 ~~a~~aL~nLa~~~~~~~~i~e~g~i~~L~~ll~~~------~~~~v~~~a~~~L~~La~~~~~~~~~i~~~g~l~~L~~  369 (534)
                      ..++.+|+|+..          .+.++.+..++...      .+..++..|+.+|..++..++..-        .+.+++
T Consensus       190 ~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~  251 (336)
T d1lsha1         190 VLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLP  251 (336)
T ss_dssp             HHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHH
T ss_pred             HHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHH
Confidence            788999999763          34577777777532      133689999999999987654321        234455


Q ss_pred             hhcC----CchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC
Q 009471          370 YLDG----PLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLK-AGSLGAQQAAASALCRVCTS  430 (534)
Q Consensus       370 ~L~~----~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~~la~~  430 (534)
                      ++.+    +++|..|..+|... .+.       ...+..+...+. ..+..|.......|.+++.+
T Consensus       252 i~~n~~e~~EvRiaA~~~lm~t-~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         252 IFLNVAIKSELRIRSCIVFFES-KPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHHT-CCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCChHHHHHHHHHHHhc-CCC-------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            5433    56787777777553 221       124677777774 45678888888888898865

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.37  E-value=5.8  Score=36.26  Aligned_cols=157  Identities=18%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             HHHhCCChHHHHHHHcc-----------CChHHHHHHHHHHHHccCCchHHHHHHh-hCcHHHHHHHhhcCCChhHHHHH
Q 009471          273 AIVGHGGVRPLIEICQT-----------GDSVSQAAAACTLKNISAVPEVRQMLAE-EGIVSVMIKLLDCGILLGSKEYA  340 (534)
Q Consensus       273 ~l~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~aL~nLa~~~~~~~~i~e-~g~i~~L~~ll~~~~~~~v~~~a  340 (534)
                      .| ..+|+..|+.+|..           .+...+..++.||+.+.........+.+ ..++..++..+.+... .++..+
T Consensus        41 ~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~-~tr~~a  118 (343)
T d2bnxa1          41 TF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-NMMIDA  118 (343)
T ss_dssp             HH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-HHHHHH
T ss_pred             HH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch-HHHHHH
Confidence            45 45677777777631           1345678899999999988766666655 8889999998887776 789999


Q ss_pred             HHHHHHHccCChHHHHHHHhcCChHHHHHhhcCCchHHHHHHHHHHhhcCccHHHHHhcCcHHHHHHHHhcC-CHHHHHH
Q 009471          341 AECLQNLTASNENLRRSVVSEGGIRSLLAYLDGPLPQESAVGALRNLVGSVSQEVLISLGFFPRLVHVLKAG-SLGAQQA  419 (534)
Q Consensus       341 ~~~L~~La~~~~~~~~~i~~~g~l~~L~~~L~~~~~~~~a~~aL~~La~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~  419 (534)
                      ...|..+|...+.                    ++....++.++.+..      ..-+.+-+..+++.++.+ +.+.+..
T Consensus       119 ~elL~~lc~~~~~--------------------~~g~~~vL~Al~~~~------~~~e~~RF~~lv~~l~~~~~~ey~~a  172 (343)
T d2bnxa1         119 AKLLSALCILPQP--------------------EDMNERVLEAMTERA------EMDEVERFQPLLDGLKSGTSIALKVG  172 (343)
T ss_dssp             HHHHHHHHTCCSS--------------------TTHHHHHHHHHHHHH------HHHTSCTTHHHHHHTSTTSCHHHHHH
T ss_pred             HHHHHHHHhccCC--------------------CchHHHHHHHHHHHH------HhcCCCcHHHHHHHHhccccHHHHHH
Confidence            9999998863210                    011122223332221      122344467777777654 4677777


Q ss_pred             HHHHHHHhcCC-h------hHHHHHHhcCchHHHHHhhcCCChHH
Q 009471          420 AASALCRVCTS-A------EMKKLVGEAGCTPLLIKLLEAKPNSV  457 (534)
Q Consensus       420 A~~aL~~la~~-~------~~~~~i~~~g~v~~Lv~ll~~~~~~v  457 (534)
                      ++..+-.+..+ +      ..|..+...|..+.+-++-...++.+
T Consensus       173 ~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         173 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence            77777777654 2      35566777786666555554555444

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.22  E-value=12  Score=38.56  Aligned_cols=175  Identities=10%  Similarity=0.091  Sum_probs=92.7

Q ss_pred             CHHHHHHHHHHHHHhhcCCchhHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHhhcChhhH---------HHHHh--C
Q 009471          209 SPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSTVGKEKATISLQRLSMSAEMA---------RAIVG--H  277 (534)
Q Consensus       209 ~~~v~~~A~~~L~~La~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~Ls~~~~~~---------~~l~~--~  277 (534)
                      .+.++..++++++..+..... ..  -..+++.++..|.+.+..++..|++++..+....+..         ..+..  .
T Consensus       471 ~~~lr~~~~~~i~~~~~~~~~-~~--~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         471 HIILRVDAIKYIYTFRNQLTK-AQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCH-HH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             hHHHHHHHHHHHHHHHhhccH-HH--HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            478899999999998875432 11  1246899999999999999999999999987532110         00000  1


Q ss_pred             CChHHHHHHHccCCh-HHH----HHHHHHHHHccC--CchHHHHHHhhCcHHHHHHHh----hcCCChhHHHHHHHHHHH
Q 009471          278 GGVRPLIEICQTGDS-VSQ----AAAACTLKNISA--VPEVRQMLAEEGIVSVMIKLL----DCGILLGSKEYAAECLQN  346 (534)
Q Consensus       278 g~i~~Lv~ll~~~~~-~~~----~~a~~aL~nLa~--~~~~~~~i~e~g~i~~L~~ll----~~~~~~~v~~~a~~~L~~  346 (534)
                      ..+..|+..+..... ...    .....++..+..  .+......  ..+++.+..++    +++...........+|..
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~  625 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA  625 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            112444444433221 111    234444444332  11111111  11233343333    333333456667777777


Q ss_pred             HccC-ChHHHHHHHhcCChHHHHHhhcC--CchHHHHHHHHHHhhc
Q 009471          347 LTAS-NENLRRSVVSEGGIRSLLAYLDG--PLPQESAVGALRNLVG  389 (534)
Q Consensus       347 La~~-~~~~~~~i~~~g~l~~L~~~L~~--~~~~~~a~~aL~~La~  389 (534)
                      +... ++.... -+....+|.+..++..  ....+.+...+..+..
T Consensus       626 l~~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         626 ILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            7642 222222 2334446666666654  4556666666666654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.92  E-value=3.3  Score=32.75  Aligned_cols=74  Identities=20%  Similarity=0.169  Sum_probs=61.0

Q ss_pred             chHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHhHHHHhcCCcHHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 009471          154 GNTRELLARLQIGHLEAKHKALDSLVEAMKE-DEKNVLAVMGRSNIAALVQLLTA------TSPRIREKTVTVICSLAES  226 (534)
Q Consensus       154 ~~i~~Ll~~L~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~g~v~~Lv~lL~~------~~~~v~~~A~~~L~~La~~  226 (534)
                      ..++.+-.+|+++++.++..|+..|-.+... .+.....+.+.+.+..|+++++.      .+..|+...+..+...+..
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3467788899999999999999988888876 46777788888999999999863      4589999999999887654


Q ss_pred             C
Q 009471          227 G  227 (534)
Q Consensus       227 ~  227 (534)
                      .
T Consensus       125 f  125 (145)
T d1ujka_         125 L  125 (145)
T ss_dssp             C
T ss_pred             C
Confidence            4