Citrus Sinensis ID: 009479

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
MCHQMKRYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
cccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHccccccc
cccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEEccccc
mchqmkryytNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDShvngncdvnydhnnDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLShlstplvdqvehsleiplhrgmprleARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILgvyfepkystTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKlvnkeplccMYYAKEAIKGLVKAYFVEAkwfhakyvptfeecvenstmssgypMLAVEALVGLEDMAITKRALDWaisvpkiirsssliarldddvhtykveqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNineeiqdpnhpplqwllpslNLARMMVVLYQngdgytnstgktkdriasllvdplpm
mchqmkryytntevekRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALdwaisvpkiirsssliarlDDDVHTYKVeqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGdgytnstgktkdriasllvdplpm
MCHQMKRYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFsrkhlksllshlsTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
*******YYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYT********************
MCHQMKRYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSL*******LVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
MCHQMKRYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV*********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
****MKRYYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
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MCHQMKRYYTxxxxxxxxxxxxxxxxxxxxxNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query533 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.958 0.917 0.499 1e-153
F6M8H7562 Probable sesquiterpene sy N/A no 0.960 0.911 0.504 1e-149
F6M8H4559 Probable sesquiterpene sy N/A no 0.954 0.910 0.507 1e-148
B5A435559 Sesquiterpene synthase OS N/A no 0.954 0.910 0.507 1e-147
E3W207559 Sesquiterpene synthase OS N/A no 0.954 0.910 0.511 1e-146
Q43714555 (+)-delta-cadinene syntha N/A no 0.956 0.918 0.497 1e-145
F6M8H5562 Probable sesquiterpene sy N/A no 0.954 0.905 0.501 1e-145
F6M8H6562 Probable sesquiterpene sy N/A no 0.954 0.905 0.501 1e-144
E3W208562 Sesquiterpene synthase OS N/A no 0.954 0.905 0.501 1e-144
O49853554 (+)-delta-cadinene syntha N/A no 0.945 0.909 0.487 1e-142
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/529 (49%), Positives = 377/529 (71%), Gaps = 18/529 (3%)

Query: 9   YTNTE--VEKRFETLKAEIEKLLVS--NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKE 64
           +TNT+  +++  + LK E+ K+L++  +++A K L     +++ +QRLGVAYHFE+EI E
Sbjct: 43  FTNTDDHLKQHVQQLKEEVRKMLMAADDDSAQKLL-----LIDAIQRLGVAYHFESEIDE 97

Query: 65  ALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAML 124
            L+ ++D  V            D+Y  +LRFRLLRQ GY VS D+F  F+D +G FK  L
Sbjct: 98  VLKHMFDGSVVSA-------EEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESL 150

Query: 125 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHR 184
           ++D +G+L LYEA++ RV GE+IL+EA  F+  HL+S   H S PL +QV H+L+ P+ +
Sbjct: 151 SSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRK 210

Query: 185 GMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKL 244
           G+PRLEAR Y S+Y+AD+S  N+ +L+LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KL
Sbjct: 211 GLPRLEARHYFSVYQADDS-HNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKL 269

Query: 245 PFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 304
           PFARDR+VECYFWILGVYFEP++   R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A+
Sbjct: 270 PFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAV 329

Query: 305 ERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEA 364
           ERW++ A ++LP+YM+VCY ALL V  E+E+++  +     +YYAKEA+K  V+AY+ EA
Sbjct: 330 ERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEA 389

Query: 365 KWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 424
           KW   + +PT EE +  + ++S Y MLA  + VG+ D A+TK + DW  S PKI+R+S++
Sbjct: 390 KWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGD-AVTKESFDWIFSKPKIVRASAI 448

Query: 425 IARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP 484
           + RL DD+  +K EQ+RG   S+VECY++Q+G SE+E  N+    V   W +INEE   P
Sbjct: 449 VCRLMDDMVFHKFEQKRGHVASAVECYMKQHGASEQETPNEFPQPVREAWKDINEECLIP 508

Query: 485 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533
              P+  L+  LNLAR++ V+Y+N DGYT+     KD + S+L+DP+P+
Sbjct: 509 TAVPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.958 0.917 0.500 1e-152
147856860557 hypothetical protein VITISV_030783 [Viti 0.958 0.917 0.500 1e-152
147828675557 hypothetical protein VITISV_013313 [Viti 0.958 0.917 0.499 1e-152
75223414557 RecName: Full=(-)-germacrene D synthase 0.958 0.917 0.499 1e-151
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.958 0.917 0.493 1e-150
315134533556 sesquiterpene synthase [Toona sinensis] 0.904 0.866 0.537 1e-149
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.958 0.917 0.495 1e-148
392306394556 sesquiterpene synthase [Toona sinensis] 0.904 0.866 0.535 1e-148
224133712553 predicted protein [Populus trichocarpa] 0.943 0.909 0.506 1e-148
408407799562 RecName: Full=Probable sesquiterpene syn 0.960 0.911 0.504 1e-147
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/529 (50%), Positives = 379/529 (71%), Gaps = 18/529 (3%)

Query: 9   YTNTE--VEKRFETLKAEIEKLLVS--NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKE 64
           +TNT+  +++  + LK E+ K+L++  +++A K L     +++ +QRLGVAYHFE+EI E
Sbjct: 43  FTNTDDHLKQHVQQLKEEVRKMLMAADDDSAQKLL-----LIDAIQRLGVAYHFESEIDE 97

Query: 65  ALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAML 124
            L+ ++D  V            D+Y  +LRFRLLRQ GY VS D+F  F+D +G FK  L
Sbjct: 98  VLKHMFDGSVVSA-------EEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESL 150

Query: 125 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHR 184
           ++D +G+L LYEA++ RV GE+IL+EA  F+  HL+S   H S PL +QV H+L+ P+ +
Sbjct: 151 SSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRK 210

Query: 185 GMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKL 244
           G+PRLEAR Y S+Y+AD+S  N+ +L+LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KL
Sbjct: 211 GLPRLEARHYFSVYQADDS-HNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKL 269

Query: 245 PFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 304
           PFARDR+VECYFWILGVYFEP++   R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A+
Sbjct: 270 PFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAV 329

Query: 305 ERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEA 364
           ERW++ A ++LP+YM+VCY ALL V  E+E+++  +     +YYAKEA+K  V+AY+ EA
Sbjct: 330 ERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEA 389

Query: 365 KWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 424
           KW   + +PT EE +  + ++S Y MLA  + VG+ D A+TK + DW  S PKI+R+S++
Sbjct: 390 KWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGD-AVTKESFDWIFSKPKIVRASAI 448

Query: 425 IARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP 484
           + RL DD+ ++K EQ+RG   S+VECY++Q+G SE+E  N+    V   W +INEE   P
Sbjct: 449 VCRLMDDMVSHKFEQKRGHVASAVECYMKQHGASEQETHNEFHKQVRDAWKDINEECLIP 508

Query: 485 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533
              P+  L+  LNLAR++ V+Y+N DGYT+S    KD + S+L+DP+P+
Sbjct: 509 TAVPMPILMRVLNLARVIDVIYKNEDGYTHSGTVLKDFVTSMLIDPVPI 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|224133712|ref|XP_002321642.1| predicted protein [Populus trichocarpa] gi|222868638|gb|EEF05769.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|408407799|sp|F6M8H7.1|SMST_SANMU RecName: Full=Probable sesquiterpene synthase; Short=SmSTPS gi|333411345|gb|AEF32537.1| putative sesquiterpene synthase [Santalum murrayanum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.954 0.910 0.5 2.3e-133
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.958 0.934 0.454 6.1e-126
UNIPROTKB|D0VMR7547 C3 "Delta-guaiene synthase 2" 0.958 0.934 0.448 7.8e-126
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.958 0.934 0.452 9.9e-126
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.904 0.876 0.486 2.1e-123
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.962 0.898 0.453 9.8e-119
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.956 0.918 0.422 3.8e-110
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.979 0.942 0.418 1.6e-109
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.941 0.890 0.421 1.1e-108
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.951 0.897 0.415 4.9e-108
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 259/518 (50%), Positives = 359/518 (69%)

Query:    15 EKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY-DSH 73
             E++ E LK ++ + L +  T  K L+++  I++  QRLG+AYHFENEI+E+L+ IY  ++
Sbjct:    48 ERQVEELKEQVRRELAA--TVDKPLQQL-NIIDATQRLGIAYHFENEIEESLEHIYLHTY 104

Query:    74 VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLC 133
             V  NC   +  ++DLY VAL FRLLRQ GYKVS D+F KFRD +  FK  L  DAKGLL 
Sbjct:   105 VENNC---FQGSHDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLE 161

Query:   134 LYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQ 193
             LYEA++L V GE +L++A EF              PL +QV H+L  PL +G+PRLEA  
Sbjct:   162 LYEATHLSVHGEEMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVY 221

Query:   194 YISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 253
             +  IYEA +S  N+ +L+LAKLDFNLLQ+LH+ ELS+++RWWK +DFA K PFARDRLVE
Sbjct:   222 FFRIYEAYDS-HNKALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVE 280

Query:   254 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAAN 313
              YFW+LGVYFEP+YS  RK + K+  + S IDDIYD YGTL+EL+LFT A++RW+V + +
Sbjct:   281 GYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLD 340

Query:   314 ELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVP 373
             +LP+YM+ CY ++LDV  E+E+++ N+  L  M+YAKE +K LV+ Y  EAKW H KYVP
Sbjct:   341 QLPEYMKPCYKSILDVYNEIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVP 400

Query:   374 TFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 433
             TFEE +  + ++SGY  L   + +G+ ++A +K A DW  S P +I +S  + RL DD+ 
Sbjct:   401 TFEEYMPVALVTSGYTFLTTISYLGMGEIA-SKEAFDWLFSHPPVIEASESVCRLMDDMR 459

Query:   434 TYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLL 493
             ++K EQERG   S +ECY++QYGV+EEEA ++ +  +   W +INEE   P   P   L+
Sbjct:   460 SHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLM 519

Query:   494 PSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 531
               LNL R++ V+Y+N DGYT+     KD IASLL+DP+
Sbjct:   520 RILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.50190.95490.9056N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.50770.95490.9105N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.50470.96060.9110N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.50190.95490.9056N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.51150.95490.9105N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.50190.95490.9056N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.50770.95490.9105N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.49900.95870.9174yesno
B3TPQ6BCUSY_MAGGA4, ., 2, ., 3, ., 1, 2, 80.50300.90430.8763N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-107
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-99
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-65
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-45
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 5e-39
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-31
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 2e-14
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  667 bits (1723), Expect = 0.0
 Identities = 270/527 (51%), Positives = 359/527 (68%), Gaps = 11/527 (2%)

Query: 8   YYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQ 67
           Y    E+E+  E LK E+ K+L  +       E +  I   LQRLG++YHFE+EIKE L 
Sbjct: 23  YSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDR-LQRLGISYHFEDEIKEILD 81

Query: 68  TIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTND 127
            IY             + +DLY  AL FRLLRQHGY VS+D+FKKF+DE G+FK  LT D
Sbjct: 82  YIYRYWTERGES----NEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQD 137

Query: 128 AKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHR 184
            KG+L LYEAS+L   GE+IL+EA  F+ KHL+  L     +   L  ++E++LEIPLH 
Sbjct: 138 VKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHA 197

Query: 185 GMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKL 244
            +PRLEAR YI  YE ++   NE +LELAKLDFN+LQALH+ EL  +SRWWKD+D A+KL
Sbjct: 198 SLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKL 256

Query: 245 PFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 304
           PFARDRLVECYFW  G YFEP+YS  R  + K IA+ +VIDD YDVYGTLEEL+LFT A+
Sbjct: 257 PFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAV 316

Query: 305 ERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEA 364
           ERW++ A ++LP+YM++ + ALL+ V E+E++L+ +     + Y KEA K LVKAY VEA
Sbjct: 317 ERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEA 376

Query: 365 KWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 424
           KW H  YVPTFEE +EN+ +S G   L + + +G+ D+ +T+ A +W  S PK++R+SS 
Sbjct: 377 KWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASST 435

Query: 425 IARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP 484
           I RL +D+ TY+ E +RGD  SS+ECY+++YGVSEEEA  +IK M+E  W  +NEE   P
Sbjct: 436 IGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKP 495

Query: 485 NHP-PLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP 530
           +   P       LNLAR++ V Y+ GDG+T+  G+ KD I SLL +P
Sbjct: 496 SSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 533
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.91
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.69
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 93.99
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 93.06
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 89.57
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 85.89
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 85.53
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 83.5
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=7.4e-148  Score=1215.38  Aligned_cols=512  Identities=53%  Similarity=0.906  Sum_probs=493.7

Q ss_pred             CCCChh-HHHHHHHHHHHHHHHHHhh---ccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCC
Q 009479            7 RYYTNT-EVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVN   81 (533)
Q Consensus         7 ~~~~~~-~~~~~~~~lk~~v~~~l~~---~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~-~~~~~~~~   81 (533)
                      .++++. .+.+++++||++||+||..   ..    |++++|++||+||||||+|||++||+++|+++|++| +.+..  .
T Consensus        21 ~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~--~   94 (542)
T cd00684          21 SDYSEEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGES--N   94 (542)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccc--c
Confidence            345444 7899999999999999985   45    999999999999999999999999999999999998 43311  1


Q ss_pred             CCCCCchHHHHHHHHHhhhcCcceehhhhhcccccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHH
Q 009479           82 YDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKS  161 (533)
Q Consensus        82 ~~~~~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~  161 (533)
                         ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||||++||++||++
T Consensus        95 ---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~  171 (542)
T cd00684          95 ---EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEE  171 (542)
T ss_pred             ---CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHH
Confidence               57999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc---CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHh
Q 009479          162 LLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDI  238 (533)
Q Consensus       162 ~~~~---~~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~  238 (533)
                      ++++   ++++|+++|++||++|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||+++++||+++
T Consensus       172 ~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~  250 (542)
T cd00684         172 KLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDFNILQALHQEELKILSRWWKDL  250 (542)
T ss_pred             HhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhc
Confidence            9986   789999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             CCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChh
Q 009479          239 DFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKY  318 (533)
Q Consensus       239 ~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~  318 (533)
                      ||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||.+|++.||+|++|||+++++.+|+|
T Consensus       251 gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~  330 (542)
T cd00684         251 DLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEY  330 (542)
T ss_pred             CCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHH
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHH
Q 009479          319 MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV  397 (533)
Q Consensus       319 mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~  397 (533)
                      ||++|.++++++++++.++.+ +++ +++.+++++|+++++||++||+|+++|++||++|||++|++|+|++++++++++
T Consensus       331 mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~  409 (542)
T cd00684         331 MKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFL  409 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHH
Confidence            999999999999999999988 777 899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 009479          398 GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNI  477 (533)
Q Consensus       398 ~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~l  477 (533)
                      +||.. +|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+|+++++++|+++||++
T Consensus       410 ~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~l  488 (542)
T cd00684         410 GMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKEL  488 (542)
T ss_pred             hcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999 99999999877899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCC-CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhccc
Q 009479          478 NEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP  530 (533)
Q Consensus       478 n~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~p  530 (533)
                      |++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||++|
T Consensus       489 n~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         489 NEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            9999998 7899999999999999999999999999999878999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-138
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-118
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-118
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-118
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-118
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-118
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-117
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-117
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-116
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-116
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-96
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-94
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-93
2j5c_A569 Rational Conversion Of Substrate And Product Specif 8e-90
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 4e-80
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-71
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-62
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 7e-29
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  489 bits (1259), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/525 (47%), Positives = 347/525 (66%), Gaps = 17/525 (3%)
Query: 11  NTEVEKRFETLKAEIEKLLVS--NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQT 68
           + E EKR + LK E+ K++V+   N+  K     +A ++ +QRLGV+YHF  EI++ L+ 
Sbjct: 45  DAETEKRHQQLKEEVRKMIVAPMANSTQK-----LAFIDSVQRLGVSYHFTKEIEDELEN 99
Query: 69  IYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDA 128
           IY +        N D  NDLY  ++RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D 
Sbjct: 100 IYHN--------NNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDV 151
Query: 129 KGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPR 188
           +GLL LY+ASYLRV GE+IL+EA  F              PL ++V H+L+  + RG+PR
Sbjct: 152 RGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPR 211
Query: 189 LEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFAR 248
           +EAR Y+S+Y+ D  + N+ +LE AK+DFN+LQ LHR ELSEI RWWKD+DF  KLP+AR
Sbjct: 212 VEARHYLSVYQ-DIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYAR 270
Query: 249 DRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWE 308
           DR+VE YFWI GVYFEP+YS  RK +TK+IA+AS++DD YD Y T EEL  +T+AIERW+
Sbjct: 271 DRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD 330
Query: 309 VVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFH 368
           +   +E+P+YM+  Y ALLDV +EM   +        + YAK A+  L ++Y VEAKW  
Sbjct: 331 IKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTL 390
Query: 369 AKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARL 428
             Y P+FEE   N+  + GY MLA+ + VG+ D+ +T     WA S PKII++S++I R 
Sbjct: 391 QNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRF 449
Query: 429 DDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPP 488
            DDV  +K +  R D  S++ECY+++YGV+ +EA +     VE  W ++N+E   P   P
Sbjct: 450 MDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMP 509
Query: 489 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533
            + L  SLNLAR+M VLY+ GDGYT      K  I SLL++P+ +
Sbjct: 510 TEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-179
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-175
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-174
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-174
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-172
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-159
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-158
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-158
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-106
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 3e-33
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 3e-31
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-16
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-08
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  518 bits (1336), Expect = 0.0
 Identities = 248/521 (47%), Positives = 349/521 (66%), Gaps = 13/521 (2%)

Query: 13  EVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDS 72
           E EKR + LK E+ K++V+         + +A ++ +QRLGV+YHF  EI++ L+ IY +
Sbjct: 47  ETEKRHQQLKEEVRKMIVAPM---ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN 103

Query: 73  HVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLL 132
           +         D  NDLY  ++RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL
Sbjct: 104 N--------NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLL 155

Query: 133 CLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEAR 192
            LY+ASYLRV GE+IL+EA  F+  HL   ++ L  PL ++V H+L+  + RG+PR+EAR
Sbjct: 156 ELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEAR 215

Query: 193 QYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLV 252
            Y+S+Y+   S  N+ +LE AK+DFN+LQ LHR ELSEI RWWKD+DF  KLP+ARDR+V
Sbjct: 216 HYLSVYQDIES-HNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVV 274

Query: 253 ECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAA 312
           E YFWI GVYFEP+YS  RK +TK+IA+AS++DD YD Y T EEL  +T+AIERW++   
Sbjct: 275 EGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCI 334

Query: 313 NELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYV 372
           +E+P+YM+  Y ALLDV +EM   +        + YAK A+  L ++Y VEAKW    Y 
Sbjct: 335 DEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYK 394

Query: 373 PTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 432
           P+FEE   N+  + GY MLA+ + VG+ D+ +T     WA S PKII++S++I R  DDV
Sbjct: 395 PSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDV 453

Query: 433 HTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWL 492
             +K +  R D  S++ECY+++YGV+ +EA +     VE  W ++N+E   P   P + L
Sbjct: 454 AEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVL 513

Query: 493 LPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 533
             SLNLAR+M VLY+ GDGYT      K  I SLL++P+ +
Sbjct: 514 NRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.79
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 89.43
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 89.1
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 87.97
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 84.64
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 81.95
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 81.76
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 81.12
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 80.64
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-159  Score=1292.55  Aligned_cols=512  Identities=48%  Similarity=0.862  Sum_probs=484.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhh-ccCCccChhhHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 009479            7 RYYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHN   85 (533)
Q Consensus         7 ~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~d~~~~l~liD~lqrLGi~~hFe~EI~~~L~~~~~~~~~~~~~~~~~~~   85 (533)
                      .+|..+.+.+|+++||++||+||.+ .+    |++++|+|||+||||||+|||++||+++|+++|++   +  ...   .
T Consensus        41 ~~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~---~--~~~---~  108 (554)
T 3g4d_A           41 DKNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN---N--NDA---E  108 (554)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS---C--CCT---T
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc---c--CCC---C
Confidence            4677889999999999999999975 45    99999999999999999999999999999999985   1  111   3


Q ss_pred             CchHHHHHHHHHhhhcCcceehhhhhcccccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHHHhhc
Q 009479           86 NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH  165 (533)
Q Consensus        86 ~dl~~~al~FrlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~ea~~ft~~~L~~~~~~  165 (533)
                      .||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||||++||++||++++.+
T Consensus       109 ~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~  188 (554)
T 3g4d_A          109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVAS  188 (554)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCCh
Q 009479          166 LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLP  245 (533)
Q Consensus       166 ~~~~l~~~V~~aL~~P~~~~~~r~e~r~yi~~Y~~~~~~~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~  245 (533)
                      ++++|+++|+|||+.|||+++||+|||+||++|+++ +++|++||||||||||+||++||+||++++|||+++||.++||
T Consensus       189 ~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~  267 (554)
T 3g4d_A          189 LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLP  267 (554)
T ss_dssp             CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCT
T ss_pred             cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCC
Confidence            888999999999999999999999999999999999 9999999999999999999999999999999999999988999


Q ss_pred             hhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHH
Q 009479          246 FARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFA  325 (533)
Q Consensus       246 faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~viDD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~a  325 (533)
                      |||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+
T Consensus       268 faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~a  347 (554)
T 3g4d_A          268 YARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKA  347 (554)
T ss_dssp             TCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcC
Q 009479          326 LLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAI  404 (533)
Q Consensus       326 l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~l  404 (533)
                      |+++++|+++++.+ |++ ++++|++++|+++++||++||+|+.+||+||+||||+||++|+|+++++++++++||+. +
T Consensus       348 l~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-l  425 (554)
T 3g4d_A          348 LLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-V  425 (554)
T ss_dssp             HHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTT-S
T ss_pred             HHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCC-C
Confidence            99999999999888 888 89999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             cHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCCCCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 009479          405 TKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP  484 (533)
Q Consensus       405 p~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~  484 (533)
                      |+++++|++++|+|+++++.++||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|+++
T Consensus       426 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~  505 (554)
T 3g4d_A          426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP  505 (554)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 009479          485 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM  533 (533)
Q Consensus       485 ~~~p~~~~~~~lN~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pi~~  533 (533)
                      +++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus       506 ~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          506 TEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            8999999999999999999999999999999778999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 533
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-138
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-132
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-64
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-64
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 4e-51
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-34
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  399 bits (1027), Expect = e-138
 Identities = 119/326 (36%), Positives = 189/326 (57%)

Query: 206 NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 265
           N LI ELAKL+FN++QA H+ EL ++SRWW  + F  KLPF RDRLVE +FW +G++   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 266 KYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFA 325
           ++   RK    II +A+VIDDIYDVYGTL+EL+LFT   +RW+  +   LP YMQ+CY+ 
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 326 LLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMS 385
           + + + +    ++ +    C+ Y ++++  LV+AYF EAKW+H+ Y P+ +E +  + +S
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 386 SGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAP 445
              P +         + +     +D       I+  + +I RL DD+ T   E  RGD P
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 446 SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL 505
            +++CY+++   SEEEA   +K ++   W ++N  I      P   +  + N+ R+   +
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFI 301

Query: 506 YQNGDGYTNSTGKTKDRIASLLVDPL 531
           Y +GDG+     KT + IA LL +P 
Sbjct: 302 YLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.97
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.48
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 80.87
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6.2e-97  Score=760.71  Aligned_cols=326  Identities=43%  Similarity=0.832  Sum_probs=309.6

Q ss_pred             ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHHHHHHHHhhh
Q 009479          205 RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI  284 (533)
Q Consensus       205 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWw~~~~l~~~l~faRdR~~e~yf~~~a~~~eP~~s~~Rl~~ak~~~l~~vi  284 (533)
                      .|++||||||||||+||++||+||+.++|||+++|+.+++||||||++|||||++|++|||+||.+|+++||.+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHH
Q 009479          285 DDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVE  363 (533)
Q Consensus       285 DD~fD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~E  363 (533)
                      ||+||.|||+||++.||+||+|||.++++.+|+|||++|.++++++++++.++.+ |++ ++.++++++|++++++|++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~-~~~~~l~~~w~~~~~~~l~E  159 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEVVRNYNVE  159 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCe-eeHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888 887 89999999999999999999


Q ss_pred             HHHhhCCCCCChHHHHhhhccccchhhHHHHHHHhcCCCcCcHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhhcCC
Q 009479          364 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD  443 (533)
Q Consensus       364 AkW~~~g~vPs~eEYl~~~~~Ssg~~~~~~~~~~~~g~~~lp~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~  443 (533)
                      |+|+.+||+||++|||++|.+|+|+++++.+++++||.  ++++.++|++++|+|+++++.++||+|||+|+++|+++|+
T Consensus       160 A~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~--~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~  237 (328)
T d5easa2         160 STWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS--ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQ  237 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT--CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC--CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCC
Confidence            99999999999999999999999999999999999986  4677899999999999999999999999999999999999


Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHH
Q 009479          444 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDR  522 (533)
Q Consensus       444 ~~n~V~cyMke~gvs~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-D~~t~~~~~~k~~  522 (533)
                      ++|+|+|||+|+|+|+|||+++++++|+++||++|+++++++++|++|+++++|+||+++++|+++ ||||+|++.||++
T Consensus       238 ~~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~  317 (328)
T d5easa2         238 IATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPH  317 (328)
T ss_dssp             TTCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             CCeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999977 9999998789999


Q ss_pred             HHhhhcccCCC
Q 009479          523 IASLLVDPLPM  533 (533)
Q Consensus       523 i~~ll~~pi~~  533 (533)
                      |++||++||||
T Consensus       318 i~~ll~epi~~  328 (328)
T d5easa2         318 IINLLVDSIKI  328 (328)
T ss_dssp             HHHHHTCCCCC
T ss_pred             HHHHhccCCcC
Confidence            99999999997
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure